cd /N/dc2/projects/marinovg/2015-04-23-Paramecium-stringtie; python /N/dc2/projects/marinovg/code/SAMstats.py Paramecium_octaurelia_K8_CA1-Sample_8V-2x100-TopHat-2.0.8-minIntron10/accepted_hits.bam SAMstats-Paramecium_octaurelia_K8_CA1-Sample_8V-2x100 -bam /N/dc2/projects/marinovg/genomes/Ciliates/Paramecium_octaurelia_K8_CA1/Octaurelia_K8_CA1.scf.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2015-04-23-Paramecium-stringtie; python /N/dc2/projects/marinovg/code/SAMstats.py Paramecium_octaurelia_K8_CA1-Sample_8D1-2x100-TopHat-2.0.8-minIntron10/accepted_hits.bam  SAMstats-Paramecium_octaurelia_K8_CA1-Sample_8D1-2x100 -bam /N/dc2/projects/marinovg/genomes/Ciliates/Paramecium_octaurelia_K8_CA1/Octaurelia_K8_CA1.scf.chrom.sizes samtools
cd /N/dc2/projects/marinovg/2015-04-23-Paramecium-stringtie; python /N/dc2/projects/marinovg/code/SAMstats.py Paramecium_tredecaurelia_209_CA2-Sample_209_13-2x100-TopHat-2.0.8-minIntron10/accepted_hits.bam SAMstats-Paramecium_tredecaurelia_209_CA2-Sample_209_13-2x100 -bam /N/dc2/projects/marinovg/genomes/Ciliates/Paramecium_tredecaurelia_209_CA2/tredecaurelia_209_CA2.scf.chrom.sizes samtools