cd /N/dc2/projects/marinovg/Paramecium/RNA-seq/2015-04-13-promoters; python /N/dc2/projects/marinovg/code/SAMstats.py Conjugation-2h-GSM692085-2x75-TopHat-2.0.8-minIntron10/accepted_hits.bam SAMstats-Conjugation-2h-GSM692085-2x75 -bam /N/dc2/projects/marinovg/genomes/Ciliates/Tetrahymena_thermophila/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.chrom.sizes samtools
cd /N/dc2/projects/marinovg/Paramecium/RNA-seq/2015-04-13-promoters; python /N/dc2/projects/marinovg/code/SAMstats.py Conjugation-8h-GSM692086-2x75-TopHat-2.0.8-minIntron10/accepted_hits.bam SAMstats-Conjugation-8h-GSM692086-2x75 -bam /N/dc2/projects/marinovg/genomes/Ciliates/Tetrahymena_thermophila/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.chrom.sizes samtools
cd /N/dc2/projects/marinovg/Paramecium/RNA-seq/2015-04-13-promoters; python /N/dc2/projects/marinovg/code/SAMstats.py Growth-m-GSM692081-2x75-TopHat-2.0.8-minIntron10/accepted_hits.bam SAMstats-Growth-m-GSM692081-2x75 -bam /N/dc2/projects/marinovg/genomes/Ciliates/Tetrahymena_thermophila/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.chrom.sizes samtools
cd /N/dc2/projects/marinovg/Paramecium/RNA-seq/2015-04-13-promoters; python /N/dc2/projects/marinovg/code/SAMstats.py Starvation-15h-VI-GSM692084-2x75-TopHat-2.0.8-minIntron10/accepted_hits.bam SAMstats-Starvation-15h-VI-GSM692084-2x75 -bam /N/dc2/projects/marinovg/genomes/Ciliates/Tetrahymena_thermophila/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.chrom.sizes samtools
cd /N/dc2/projects/marinovg/Paramecium/RNA-seq/2015-04-13-promoters; python /N/dc2/projects/marinovg/code/SAMstats.py Starvation-3h-V-GSM692083-2x75-TopHat-2.0.8-minIntron10/accepted_hits.bam SAMstats-Starvation-3h-V-GSM692083-2x75 -bam /N/dc2/projects/marinovg/genomes/Ciliates/Tetrahymena_thermophila/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.chrom.sizes samtools
cd /N/dc2/projects/marinovg/Paramecium/RNA-seq/2015-04-13-promoters; python /N/dc2/projects/marinovg/code/SAMstats.py Starvation-3h-VI-GSM692082-2x75-TopHat-2.0.8-minIntron10/accepted_hits.bam SAMstats-Starvation-3h-VI-GSM692082-2x75 -bam /N/dc2/projects/marinovg/genomes/Ciliates/Tetrahymena_thermophila/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.chrom.sizes samtools