cd /N/dc2/projects/marinovg/Paramecium/RNA-seq/2015-04-13-promoters; python /N/dc2/projects/marinovg/code/PEInsertDistFromBAM.py Conjugation-2h-GSM692085.Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.e200.sorted.bam /N/dc2/projects/marinovg/genomes/Ciliates/Tetrahymena_thermophila/bowtie-indexes/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.chrom.sizes Conjugation-2h-GSM692085.Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.e200.InsLen
cd /N/dc2/projects/marinovg/Paramecium/RNA-seq/2015-04-13-promoters; python /N/dc2/projects/marinovg/code/PEInsertDistFromBAM.py Conjugation-8h-GSM692086.Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.e200.sorted.bam /N/dc2/projects/marinovg/genomes/Ciliates/Tetrahymena_thermophila/bowtie-indexes/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.chrom.sizes Conjugation-8h-GSM692086.Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.e200.InsLen
cd /N/dc2/projects/marinovg/Paramecium/RNA-seq/2015-04-13-promoters; python /N/dc2/projects/marinovg/code/PEInsertDistFromBAM.py Growth-m-GSM692081.Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.e200.sorted.bam /N/dc2/projects/marinovg/genomes/Ciliates/Tetrahymena_thermophila/bowtie-indexes/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.chrom.sizes Growth-m-GSM692081.Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.e200.InsLen
cd /N/dc2/projects/marinovg/Paramecium/RNA-seq/2015-04-13-promoters; python /N/dc2/projects/marinovg/code/PEInsertDistFromBAM.py Starvation-15h-VI-GSM692084.Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.e200.sorted.bam /N/dc2/projects/marinovg/genomes/Ciliates/Tetrahymena_thermophila/bowtie-indexes/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.chrom.sizes Starvation-15h-VI-GSM692084.Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.e200.InsLen
cd /N/dc2/projects/marinovg/Paramecium/RNA-seq/2015-04-13-promoters; python /N/dc2/projects/marinovg/code/PEInsertDistFromBAM.py Starvation-3h-V-GSM692083.Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.e200.sorted.bam /N/dc2/projects/marinovg/genomes/Ciliates/Tetrahymena_thermophila/bowtie-indexes/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.chrom.sizes Starvation-3h-V-GSM692083.Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.e200.InsLen
cd /N/dc2/projects/marinovg/Paramecium/RNA-seq/2015-04-13-promoters; python /N/dc2/projects/marinovg/code/PEInsertDistFromBAM.py Starvation-3h-VI-GSM692082.Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.e200.sorted.bam /N/dc2/projects/marinovg/genomes/Ciliates/Tetrahymena_thermophila/bowtie-indexes/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.chrom.sizes Starvation-3h-VI-GSM692082.Tetrahymena_thermophila.JCVI-TTA1-2.2.20.transcriptome.e200.InsLen