export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-10-29-Haemophilus_ducreyi; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -B -o CISA.final+PB1000.tRNAscan -f CISA.final+PB1000.tRNAscan.SS CISA.final+PB1000.fa &