cd /N/dc2/projects/marinovg/2015-06-23-ATAC/; python /N/dc2/projects/marinovg/code/PEInsertDistFromBAM.py /N/dc2/projects/marinovg/2015-06-23-ATAC/L0007-Lynch-Georgi-Tetra-50K.2x36bp.TT.unique.bam /N/dc2/projects/marinovg/genomes/Ciliates/Tetrahymena_thermophila/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.chrom.sizes /N/dc2/projects/marinovg/2015-06-23-ATAC/L0007-Lynch-Georgi-Tetra-50K.2x36bp.TT.unique.InsLen
cd /N/dc2/projects/marinovg/2015-06-23-ATAC/; python /N/dc2/projects/marinovg/code/PEInsertDistFromBAM.py /N/dc2/projects/marinovg/2015-06-23-ATAC/L0007-Lynch-Georgi-Tetra-50K.2x36bp.chrM.unique.bam /N/dc2/projects/marinovg/genomes/Ciliates/Tetrahymena_thermophila/Tetrahymena_thermophila.chrM.chrom.sizes /N/dc2/projects/marinovg/2015-06-23-ATAC/L0007-Lynch-Georgi-Tetra-50K.2x36bp.chrM.unique.InsLen
cd /N/dc2/projects/marinovg/2015-06-23-ATAC/; python /N/dc2/projects/marinovg/code/PEInsertDistFromBAM.py /N/dc2/projects/marinovg/2015-06-23-ATAC/L0010-Lynch-Georgi-Dis.2x36bp.Dappu1.unique.bam /N/dc2/projects/marinovg/genomes/Metazoa/Crustacea/Daphnia_pulex/Daphnia_pulex.Dappu1.20.chrom.sizes /N/dc2/projects/marinovg/2015-06-23-ATAC/L0010-Lynch-Georgi-Dis.2x36bp.Dappu1.unique.InsLen
cd /N/dc2/projects/marinovg/2015-06-23-ATAC/; python /N/dc2/projects/marinovg/code/PEInsertDistFromBAM.py /N/dc2/projects/marinovg/2015-06-23-ATAC/L0010-Lynch-Georgi-Dis.2x36bp.chrM.unique.bam /N/dc2/projects/marinovg/genomes/Metazoa/Crustacea/Daphnia_pulex/Daphnia_pulex.chrM.chrom.sizes /N/dc2/projects/marinovg/2015-06-23-ATAC/L0010-Lynch-Georgi-Dis.2x36bp.chrM.unique.InsLen