/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/makeblastdb -dbtype nucl -in /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Condylostoma_magnum-Condy_MAC/sequence/GCA_001499635.1_Condy_MAC_genomic.fa -title Condylostoma_magnum-Condy_MAC -out Condylostoma_magnum-Condy_MAC
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/makeblastdb -dbtype nucl -in /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Entodinium_caudatum-S-A1_macronuclear_v.1.0/sequence/GCA_002087855.1_S-A1_macronuclear_v.1.0_genomic.fa -title Entodinium_caudatum-S-A1_macronuclear_v.1.0 -out Entodinium_caudatum-S-A1_macronuclear_v.1.0
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/makeblastdb -dbtype nucl -in /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Euplotes_crassus_CT5-ASM188038v1/sequence/GCA_001880385.1_ASM188038v1_genomic.fa -title Euplotes_crassus_CT5-ASM188038v1 -out Euplotes_crassus_CT5-ASM188038v1
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/makeblastdb -dbtype nucl -in /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Euplotes_focardii-ASM188034v1/sequence/GCA_001880345.1_ASM188034v1_genomic.fa -title Euplotes_focardii-ASM188034v1 -out Euplotes_focardii-ASM188034v1
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/makeblastdb -dbtype nucl -in /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Laurentiella_sp._PUJRC_G5-ASM127297v1/sequence/GCA_001272975.1_ASM127297v1_genomic.fa -title Laurentiella_sp._PUJRC_G5-ASM127297v1 -out Laurentiella_sp._PUJRC_G5-ASM127297v1
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/makeblastdb -dbtype nucl -in /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Paraurostyla_sp._PUJRC_G6-ASM127296v1/sequence/GCA_001272965.1_ASM127296v1_genomic.fa -title Paraurostyla_sp._PUJRC_G6-ASM127296v1 -out Paraurostyla_sp._PUJRC_G6-ASM127296v1
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/makeblastdb -dbtype nucl -in /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stentor_coeruleus-ASM197095v1/sequence/GCA_001970955.1_ASM197095v1_genomic.fa -title Stentor_coeruleus-ASM197095v1 -out Stentor_coeruleus-ASM197095v1
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/makeblastdb -dbtype nucl -in /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Sterkiella_histriomuscorum-ASM127330v1/sequence/GCA_001273305.1_ASM127330v1_genomic.fa -title Sterkiella_histriomuscorum-ASM127330v1 -out Sterkiella_histriomuscorum-ASM127330v1
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/makeblastdb -dbtype nucl -in /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stylonychia_lemnae_2x8-2-454FLX_sty0.1/sequence/GCA_000325865.1_454FLX_sty0.1_genomic.fa -title Stylonychia_lemnae_2x8-2-454FLX_sty0.1 -out Stylonychia_lemnae_2x8-2-454FLX_sty0.1
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/makeblastdb -dbtype nucl -in /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stylonychia_lemnae_2x8_2-ASM32586v2/sequence/GCA_000325865.2_ASM32586v2_genomic.fa -title Stylonychia_lemnae_2x8_2-ASM32586v2 -out Stylonychia_lemnae_2x8_2-ASM32586v2
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/makeblastdb -dbtype nucl -in /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stylonychia_lemnae_asm_v1.0/sequence/GCA_000751175.1_Stylonychia_lemnae_asm_v1.0_genomic.fa -title Stylonychia_lemnae_asm_v1.0 -out Stylonychia_lemnae_asm_v1.0
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/makeblastdb -dbtype nucl -in /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Tetmemena_sp._SeJ_2015-ASM127329v1/sequence/GCA_001273295.1_ASM127329v1_genomic.fa -title Tetmemena_sp._SeJ_2015-ASM127329v1 -out Tetmemena_sp._SeJ_2015-ASM127329v1
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/makeblastdb -dbtype nucl -in /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Uroleptopsis_citrina-Ucit_macronuclear_v.1.0/sequence/GCA_001653735.1_Ucit_macronuclear_v.1.0_genomic.fa -title Uroleptopsis_citrina-Ucit_macronuclear_v.1.0 -out Uroleptopsis_citrina-Ucit_macronuclear_v.1.0
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/makeblastdb -dbtype nucl -in /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Urostyla_sp._PUJRC_G1-ASM127295v1/sequence/GCA_001272955.1_ASM127295v1_genomic.fa -title Urostyla_sp._PUJRC_G1-ASM127295v1 -out Urostyla_sp._PUJRC_G1-ASM127295v1