/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Euplotes_minuta.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Condylostoma_magnum-Condy_MAC/sequence/GCA_001499635.1_Condy_MAC_genomic.fa -outfmt 6 -num_threads 16 > Condylostoma_magnum-Condy_MAC.Euplotes_minuta.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Euplotes_minuta.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Entodinium_caudatum-S-A1_macronuclear_v.1.0/sequence/GCA_002087855.1_S-A1_macronuclear_v.1.0_genomic.fa -outfmt 6 -num_threads 16 > Entodinium_caudatum-S-A1_macronuclear_v.1.0.Euplotes_minuta.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Euplotes_minuta.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Euplotes_crassus_CT5-ASM188038v1/sequence/GCA_001880385.1_ASM188038v1_genomic.fa -outfmt 6 -num_threads 16 > Euplotes_crassus_CT5-ASM188038v1.Euplotes_minuta.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Euplotes_minuta.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Euplotes_focardii-ASM188034v1/sequence/GCA_001880345.1_ASM188034v1_genomic.fa -outfmt 6 -num_threads 16 > Euplotes_focardii-ASM188034v1.Euplotes_minuta.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Euplotes_minuta.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Laurentiella_sp._PUJRC_G5-ASM127297v1/sequence/GCA_001272975.1_ASM127297v1_genomic.fa -outfmt 6 -num_threads 16 > Laurentiella_sp._PUJRC_G5-ASM127297v1.Euplotes_minuta.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Euplotes_minuta.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Paraurostyla_sp._PUJRC_G6-ASM127296v1/sequence/GCA_001272965.1_ASM127296v1_genomic.fa -outfmt 6 -num_threads 16 > Paraurostyla_sp._PUJRC_G6-ASM127296v1.Euplotes_minuta.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Euplotes_minuta.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stentor_coeruleus-ASM197095v1/sequence/GCA_001970955.1_ASM197095v1_genomic.fa -outfmt 6 -num_threads 16 > Stentor_coeruleus-ASM197095v1.Euplotes_minuta.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Euplotes_minuta.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Sterkiella_histriomuscorum-ASM127330v1/sequence/GCA_001273305.1_ASM127330v1_genomic.fa -outfmt 6 -num_threads 16 > Sterkiella_histriomuscorum-ASM127330v1.Euplotes_minuta.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Euplotes_minuta.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stylonychia_lemnae_2x8-2-454FLX_sty0.1/sequence/GCA_000325865.1_454FLX_sty0.1_genomic.fa -outfmt 6 -num_threads 16 > Stylonychia_lemnae_2x8-2-454FLX_sty0.1.Euplotes_minuta.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Euplotes_minuta.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stylonychia_lemnae_2x8_2-ASM32586v2/sequence/GCA_000325865.2_ASM32586v2_genomic.fa -outfmt 6 -num_threads 16 > Stylonychia_lemnae_2x8_2-ASM32586v2.Euplotes_minuta.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Euplotes_minuta.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stylonychia_lemnae_asm_v1.0/sequence/GCA_000751175.1_Stylonychia_lemnae_asm_v1.0_genomic.fa -outfmt 6 -num_threads 16 > Stylonychia_lemnae_asm_v1.0.Euplotes_minuta.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Euplotes_minuta.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Tetmemena_sp._SeJ_2015-ASM127329v1/sequence/GCA_001273295.1_ASM127329v1_genomic.fa -outfmt 6 -num_threads 16 > Tetmemena_sp._SeJ_2015-ASM127329v1.Euplotes_minuta.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Euplotes_minuta.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Uroleptopsis_citrina-Ucit_macronuclear_v.1.0/sequence/GCA_001653735.1_Ucit_macronuclear_v.1.0_genomic.fa -outfmt 6 -num_threads 16 > Uroleptopsis_citrina-Ucit_macronuclear_v.1.0.Euplotes_minuta.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Euplotes_minuta.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Urostyla_sp._PUJRC_G1-ASM127295v1/sequence/GCA_001272955.1_ASM127295v1_genomic.fa -outfmt 6 -num_threads 16 > Urostyla_sp._PUJRC_G1-ASM127295v1.Euplotes_minuta.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Moneuplotes_crassus.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Condylostoma_magnum-Condy_MAC/sequence/GCA_001499635.1_Condy_MAC_genomic.fa -outfmt 6 -num_threads 16 > Condylostoma_magnum-Condy_MAC.Moneuplotes_crassus.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Moneuplotes_crassus.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Entodinium_caudatum-S-A1_macronuclear_v.1.0/sequence/GCA_002087855.1_S-A1_macronuclear_v.1.0_genomic.fa -outfmt 6 -num_threads 16 > Entodinium_caudatum-S-A1_macronuclear_v.1.0.Moneuplotes_crassus.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Moneuplotes_crassus.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Euplotes_crassus_CT5-ASM188038v1/sequence/GCA_001880385.1_ASM188038v1_genomic.fa -outfmt 6 -num_threads 16 > Euplotes_crassus_CT5-ASM188038v1.Moneuplotes_crassus.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Moneuplotes_crassus.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Euplotes_focardii-ASM188034v1/sequence/GCA_001880345.1_ASM188034v1_genomic.fa -outfmt 6 -num_threads 16 > Euplotes_focardii-ASM188034v1.Moneuplotes_crassus.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Moneuplotes_crassus.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Laurentiella_sp._PUJRC_G5-ASM127297v1/sequence/GCA_001272975.1_ASM127297v1_genomic.fa -outfmt 6 -num_threads 16 > Laurentiella_sp._PUJRC_G5-ASM127297v1.Moneuplotes_crassus.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Moneuplotes_crassus.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Paraurostyla_sp._PUJRC_G6-ASM127296v1/sequence/GCA_001272965.1_ASM127296v1_genomic.fa -outfmt 6 -num_threads 16 > Paraurostyla_sp._PUJRC_G6-ASM127296v1.Moneuplotes_crassus.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Moneuplotes_crassus.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stentor_coeruleus-ASM197095v1/sequence/GCA_001970955.1_ASM197095v1_genomic.fa -outfmt 6 -num_threads 16 > Stentor_coeruleus-ASM197095v1.Moneuplotes_crassus.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Moneuplotes_crassus.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Sterkiella_histriomuscorum-ASM127330v1/sequence/GCA_001273305.1_ASM127330v1_genomic.fa -outfmt 6 -num_threads 16 > Sterkiella_histriomuscorum-ASM127330v1.Moneuplotes_crassus.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Moneuplotes_crassus.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stylonychia_lemnae_2x8-2-454FLX_sty0.1/sequence/GCA_000325865.1_454FLX_sty0.1_genomic.fa -outfmt 6 -num_threads 16 > Stylonychia_lemnae_2x8-2-454FLX_sty0.1.Moneuplotes_crassus.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Moneuplotes_crassus.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stylonychia_lemnae_2x8_2-ASM32586v2/sequence/GCA_000325865.2_ASM32586v2_genomic.fa -outfmt 6 -num_threads 16 > Stylonychia_lemnae_2x8_2-ASM32586v2.Moneuplotes_crassus.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Moneuplotes_crassus.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stylonychia_lemnae_asm_v1.0/sequence/GCA_000751175.1_Stylonychia_lemnae_asm_v1.0_genomic.fa -outfmt 6 -num_threads 16 > Stylonychia_lemnae_asm_v1.0.Moneuplotes_crassus.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Moneuplotes_crassus.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Tetmemena_sp._SeJ_2015-ASM127329v1/sequence/GCA_001273295.1_ASM127329v1_genomic.fa -outfmt 6 -num_threads 16 > Tetmemena_sp._SeJ_2015-ASM127329v1.Moneuplotes_crassus.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Moneuplotes_crassus.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Uroleptopsis_citrina-Ucit_macronuclear_v.1.0/sequence/GCA_001653735.1_Ucit_macronuclear_v.1.0_genomic.fa -outfmt 6 -num_threads 16 > Uroleptopsis_citrina-Ucit_macronuclear_v.1.0.Moneuplotes_crassus.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Moneuplotes_crassus.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Urostyla_sp._PUJRC_G1-ASM127295v1/sequence/GCA_001272955.1_ASM127295v1_genomic.fa -outfmt 6 -num_threads 16 > Urostyla_sp._PUJRC_G1-ASM127295v1.Moneuplotes_crassus.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Nyctotherus_ovalis.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Condylostoma_magnum-Condy_MAC/sequence/GCA_001499635.1_Condy_MAC_genomic.fa -outfmt 6 -num_threads 16 > Condylostoma_magnum-Condy_MAC.Nyctotherus_ovalis.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Nyctotherus_ovalis.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Entodinium_caudatum-S-A1_macronuclear_v.1.0/sequence/GCA_002087855.1_S-A1_macronuclear_v.1.0_genomic.fa -outfmt 6 -num_threads 16 > Entodinium_caudatum-S-A1_macronuclear_v.1.0.Nyctotherus_ovalis.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Nyctotherus_ovalis.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Euplotes_crassus_CT5-ASM188038v1/sequence/GCA_001880385.1_ASM188038v1_genomic.fa -outfmt 6 -num_threads 16 > Euplotes_crassus_CT5-ASM188038v1.Nyctotherus_ovalis.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Nyctotherus_ovalis.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Euplotes_focardii-ASM188034v1/sequence/GCA_001880345.1_ASM188034v1_genomic.fa -outfmt 6 -num_threads 16 > Euplotes_focardii-ASM188034v1.Nyctotherus_ovalis.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Nyctotherus_ovalis.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Laurentiella_sp._PUJRC_G5-ASM127297v1/sequence/GCA_001272975.1_ASM127297v1_genomic.fa -outfmt 6 -num_threads 16 > Laurentiella_sp._PUJRC_G5-ASM127297v1.Nyctotherus_ovalis.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Nyctotherus_ovalis.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Paraurostyla_sp._PUJRC_G6-ASM127296v1/sequence/GCA_001272965.1_ASM127296v1_genomic.fa -outfmt 6 -num_threads 16 > Paraurostyla_sp._PUJRC_G6-ASM127296v1.Nyctotherus_ovalis.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Nyctotherus_ovalis.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stentor_coeruleus-ASM197095v1/sequence/GCA_001970955.1_ASM197095v1_genomic.fa -outfmt 6 -num_threads 16 > Stentor_coeruleus-ASM197095v1.Nyctotherus_ovalis.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Nyctotherus_ovalis.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Sterkiella_histriomuscorum-ASM127330v1/sequence/GCA_001273305.1_ASM127330v1_genomic.fa -outfmt 6 -num_threads 16 > Sterkiella_histriomuscorum-ASM127330v1.Nyctotherus_ovalis.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Nyctotherus_ovalis.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stylonychia_lemnae_2x8-2-454FLX_sty0.1/sequence/GCA_000325865.1_454FLX_sty0.1_genomic.fa -outfmt 6 -num_threads 16 > Stylonychia_lemnae_2x8-2-454FLX_sty0.1.Nyctotherus_ovalis.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Nyctotherus_ovalis.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stylonychia_lemnae_2x8_2-ASM32586v2/sequence/GCA_000325865.2_ASM32586v2_genomic.fa -outfmt 6 -num_threads 16 > Stylonychia_lemnae_2x8_2-ASM32586v2.Nyctotherus_ovalis.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Nyctotherus_ovalis.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stylonychia_lemnae_asm_v1.0/sequence/GCA_000751175.1_Stylonychia_lemnae_asm_v1.0_genomic.fa -outfmt 6 -num_threads 16 > Stylonychia_lemnae_asm_v1.0.Nyctotherus_ovalis.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Nyctotherus_ovalis.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Tetmemena_sp._SeJ_2015-ASM127329v1/sequence/GCA_001273295.1_ASM127329v1_genomic.fa -outfmt 6 -num_threads 16 > Tetmemena_sp._SeJ_2015-ASM127329v1.Nyctotherus_ovalis.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Nyctotherus_ovalis.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Uroleptopsis_citrina-Ucit_macronuclear_v.1.0/sequence/GCA_001653735.1_Ucit_macronuclear_v.1.0_genomic.fa -outfmt 6 -num_threads 16 > Uroleptopsis_citrina-Ucit_macronuclear_v.1.0.Nyctotherus_ovalis.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Nyctotherus_ovalis.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Urostyla_sp._PUJRC_G1-ASM127295v1/sequence/GCA_001272955.1_ASM127295v1_genomic.fa -outfmt 6 -num_threads 16 > Urostyla_sp._PUJRC_G1-ASM127295v1.Nyctotherus_ovalis.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Oxytricha_trifallax.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Condylostoma_magnum-Condy_MAC/sequence/GCA_001499635.1_Condy_MAC_genomic.fa -outfmt 6 -num_threads 16 > Condylostoma_magnum-Condy_MAC.Oxytricha_trifallax.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Oxytricha_trifallax.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Entodinium_caudatum-S-A1_macronuclear_v.1.0/sequence/GCA_002087855.1_S-A1_macronuclear_v.1.0_genomic.fa -outfmt 6 -num_threads 16 > Entodinium_caudatum-S-A1_macronuclear_v.1.0.Oxytricha_trifallax.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Oxytricha_trifallax.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Euplotes_crassus_CT5-ASM188038v1/sequence/GCA_001880385.1_ASM188038v1_genomic.fa -outfmt 6 -num_threads 16 > Euplotes_crassus_CT5-ASM188038v1.Oxytricha_trifallax.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Oxytricha_trifallax.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Euplotes_focardii-ASM188034v1/sequence/GCA_001880345.1_ASM188034v1_genomic.fa -outfmt 6 -num_threads 16 > Euplotes_focardii-ASM188034v1.Oxytricha_trifallax.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Oxytricha_trifallax.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Laurentiella_sp._PUJRC_G5-ASM127297v1/sequence/GCA_001272975.1_ASM127297v1_genomic.fa -outfmt 6 -num_threads 16 > Laurentiella_sp._PUJRC_G5-ASM127297v1.Oxytricha_trifallax.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Oxytricha_trifallax.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Paraurostyla_sp._PUJRC_G6-ASM127296v1/sequence/GCA_001272965.1_ASM127296v1_genomic.fa -outfmt 6 -num_threads 16 > Paraurostyla_sp._PUJRC_G6-ASM127296v1.Oxytricha_trifallax.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Oxytricha_trifallax.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stentor_coeruleus-ASM197095v1/sequence/GCA_001970955.1_ASM197095v1_genomic.fa -outfmt 6 -num_threads 16 > Stentor_coeruleus-ASM197095v1.Oxytricha_trifallax.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Oxytricha_trifallax.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Sterkiella_histriomuscorum-ASM127330v1/sequence/GCA_001273305.1_ASM127330v1_genomic.fa -outfmt 6 -num_threads 16 > Sterkiella_histriomuscorum-ASM127330v1.Oxytricha_trifallax.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Oxytricha_trifallax.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stylonychia_lemnae_2x8-2-454FLX_sty0.1/sequence/GCA_000325865.1_454FLX_sty0.1_genomic.fa -outfmt 6 -num_threads 16 > Stylonychia_lemnae_2x8-2-454FLX_sty0.1.Oxytricha_trifallax.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Oxytricha_trifallax.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stylonychia_lemnae_2x8_2-ASM32586v2/sequence/GCA_000325865.2_ASM32586v2_genomic.fa -outfmt 6 -num_threads 16 > Stylonychia_lemnae_2x8_2-ASM32586v2.Oxytricha_trifallax.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Oxytricha_trifallax.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Stylonychia_lemnae_asm_v1.0/sequence/GCA_000751175.1_Stylonychia_lemnae_asm_v1.0_genomic.fa -outfmt 6 -num_threads 16 > Stylonychia_lemnae_asm_v1.0.Oxytricha_trifallax.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Oxytricha_trifallax.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Tetmemena_sp._SeJ_2015-ASM127329v1/sequence/GCA_001273295.1_ASM127329v1_genomic.fa -outfmt 6 -num_threads 16 > Tetmemena_sp._SeJ_2015-ASM127329v1.Oxytricha_trifallax.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Oxytricha_trifallax.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Uroleptopsis_citrina-Ucit_macronuclear_v.1.0/sequence/GCA_001653735.1_Ucit_macronuclear_v.1.0_genomic.fa -outfmt 6 -num_threads 16 > Uroleptopsis_citrina-Ucit_macronuclear_v.1.0.Oxytricha_trifallax.mito.blastn
/oak/stanford/groups/akundaje/marinovg/programs/ncbi-blast-2.2.29+/bin/blastn -db Oxytricha_trifallax.mito -query /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Urostyla_sp._PUJRC_G1-ASM127295v1/sequence/GCA_001272955.1_ASM127295v1_genomic.fa -outfmt 6 -num_threads 16 > Urostyla_sp._PUJRC_G1-ASM127295v1.Oxytricha_trifallax.mito.blastn