cd /N/dc2/projects/marinovg/2016-04-04-2014-11-05-data-SPAdes-assemblies; java -Xmx256m -classpath /N/dc2/projects/marinovg/programs/Trimmomatic-0.33/trimmomatic-0.33.jar org.usadellab.trimmomatic.TrimmomaticPE Sample_A39.read1.fastq.gz Sample_A39.read2.fastq.gz Sample_A39.read1.paired.fastq.gz Sample_A39.read1.unpaired.fastq.gz Sample_A39.read2.paired.fastq.gz Sample_A39.read2.unpaired.fastq.gz ILLUMINACLIP:/N/dc2/projects/marinovg/programs/Trimmomatic-0.33/adapters/NexteraPE-PE.fa:2:30:10 &