Index of /kundaje/marinovg/oak/various/Paramecium/2015-07-17-assembly-contamination-check

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]100709_IRIS_0005-s_7_1_sequence.2x100mers.unique.idxstats2015-07-19 01:39 59K 
[ ]100709_IRIS_0005-s_7_1_sequence.2x100mers.unique.problematic_scaffolds.bam2015-07-19 01:36 927K 
[ ]100709_IRIS_0005-s_7_1_sequence.2x100mers.unique.problematic_scaffolds.bam.bai2015-07-19 01:53 384  
[ ]100709_IRIS_0005-s_7_1_sequence.2x100mers.unique.problematic_scaffolds.gtf2015-07-19 01:59 707K 
[ ]100709_IRIS_0005-s_7_1_sequence.2x100mers.unique.problematic_scaffolds.wig2015-07-19 02:00 707K 
[ ]100709_IRIS_0005-s_7_1_sequence.2x100mers.unique.scaffold_0496.wig2015-07-18 01:56 351K 
[ ]100709_IRIS_0005-s_7_1_sequence.2x100mers.unique.scaffold_0499.wig2015-07-18 01:56 356K 
[ ]100727_IRIS_0006-pbia_1_sequence.2x100mers.unique.idxstats2015-07-19 01:39 59K 
[ ]100727_IRIS_0006-pbia_1_sequence.2x100mers.unique.problematic_scaffolds.bam2015-07-19 01:36 1.0M 
[ ]100727_IRIS_0006-pbia_1_sequence.2x100mers.unique.problematic_scaffolds.bam.bai2015-07-19 01:53 384  
[ ]100727_IRIS_0006-pbia_1_sequence.2x100mers.unique.problematic_scaffolds.gtf2015-07-19 01:59 798K 
[ ]100727_IRIS_0006-pbia_1_sequence.2x100mers.unique.problematic_scaffolds.wig2015-07-19 02:00 798K 
[ ]100727_IRIS_0006-pbia_1_sequence.2x100mers.unique.scaffold_0496.wig2015-07-18 01:56 395K 
[ ]100727_IRIS_0006-pbia_1_sequence.2x100mers.unique.scaffold_0499.wig2015-07-18 01:56 403K 
[DIR]MA-lines-wig-files/2015-07-20 20:31 -  
[ ]MA-lines.wig.files2015-07-20 16:24 17K 
[ ]MA-lines.wig.table2015-07-20 20:18 39M 
[ ]MA-lines.wig.table.scaffold_04962015-07-20 20:19 20M 
[IMG]MA-lines.wig.table.scaffold_0496.png2015-07-20 20:25 446K 
[ ]MA-lines.wig.table.scaffold_04992015-07-20 20:19 20M 
[IMG]MA-lines.wig.table.scaffold_0499.png2015-07-20 20:26 464K 
[ ]Paramecium-biaurelia-Sample_2D1-2x100-TopHat-2.0.8-minIntron10-more-reads.idxstats2015-07-19 01:39 54K 
[ ]Paramecium-biaurelia-Sample_2D1-2x100-TopHat-2.0.8-minIntron10-more-reads.problematic_scaffolds.bam2015-07-19 01:36 92  
[ ]Paramecium-biaurelia-Sample_2D2-2x100-TopHat-2.0.8-minIntron10-more-reads.idxstats2015-07-19 01:39 57K 
[ ]Paramecium-biaurelia-Sample_2D2-2x100-TopHat-2.0.8-minIntron10-more-reads.problematic_scaffolds.bam2015-07-19 01:37 92  
[ ]Paramecium-biaurelia-Sample_2V-2x100-TopHat-2.0.8-minIntron10-more-reads.idxstats2015-07-19 01:39 56K 
[ ]Paramecium-biaurelia-Sample_2V-2x100-TopHat-2.0.8-minIntron10-more-reads.problematic_scaffolds.bam2015-07-19 01:36 92  
[ ]Paramecium-biaurelia-Sample_bi-2x100-TopHat-2.0.8-minIntron10-more-reads.idxstats2015-07-19 01:39 57K 
[ ]Paramecium-biaurelia-Sample_bi-2x100-TopHat-2.0.8-minIntron10-more-reads.problematic_scaffolds.bam2015-07-19 01:36 92  
[ ]Paramecium-biaurelia-strain_V1-4-autogamy-110506_IRIS_00020-2x100-TopHat-2.0.8-minIntron10.idxstats2015-07-19 01:39 57K 
[ ]Paramecium-biaurelia-strain_V1-4-autogamy-110506_IRIS_00020-2x100-TopHat-2.0.8-minIntron10.problematic_scaffolds.bam2015-07-19 01:37 92  
[ ]Paramecium-biaurelia-strain_V1-4-autogamy-141105-bi-2x100-TopHat-2.0.8-minIntron10.idxstats2015-07-19 01:39 54K 
[ ]Paramecium-biaurelia-strain_V1-4-autogamy-141105-bi-2x100-TopHat-2.0.8-minIntron10.problematic_scaffolds.bam2015-07-19 01:36 92  
[ ]Paramecium-biaurelia-strain_V1-4-vegetative-110506_IRIS_00020-para1-2x100-TopHat-2.0.8-minIntron10.idxstats2015-07-19 01:39 57K 
[ ]Paramecium-biaurelia-strain_V1-4-vegetative-110506_IRIS_00020-para1-2x100-TopHat-2.0.8-minIntron10.problematic_scaffolds.bam2015-07-19 01:37 92  
[ ]Paramecium-biaurelia-strain_V1-4-vegetative-141105-2V-2x100-TopHat-2.0.8-minIntron10.idxstats2015-07-19 01:39 57K 
[ ]Paramecium-biaurelia-strain_V1-4-vegetative-141105-2V-2x100-TopHat-2.0.8-minIntron10.problematic_scaffolds.bam2015-07-19 01:36 92  
[IMG]Paramecium_biaurelia_V1-4.biaurelia_V1-4_annotation_v1.problematic_scaffolds.ORF2015-07-19 02:00 23K 
[IMG]Paramecium_biaurelia_V1-4.biaurelia_V1-4_annotation_v1.problematic_scaffolds.ORF.BLAST2015-07-19 02:54 2.4M 
[IMG]Paramecium_biaurelia_V1-4.biaurelia_V1-4_annotation_v1.problematic_scaffolds.ORF.fa2015-07-19 01:44 22K 
[ ]PbU4-1_CGGCTATG-TAATCTTA_L001_R1_001.2x100mers.unique.idxstats2015-07-19 01:39 56K 
[ ]PbU4-1_CGGCTATG-TAATCTTA_L001_R1_001.2x100mers.unique.problematic_scaffolds.bam2015-07-19 01:36 3.2K 
[ ]PbU4-1_CGGCTATG-TAATCTTA_L001_R1_001.2x100mers.unique.problematic_scaffolds.bam.bai2015-07-19 01:53 328  
[ ]PbU4-1_CGGCTATG-TAATCTTA_L001_R1_001.2x100mers.unique.problematic_scaffolds.gtf2015-07-19 01:59 1.7K 
[ ]PbU4-1_CGGCTATG-TAATCTTA_L001_R1_001.2x100mers.unique.problematic_scaffolds.wig2015-07-19 02:00 1.7K 
[ ]PbU4-1_CGGCTATG-TAATCTTA_L001_R1_001.2x100mers.unique.scaffold_0496.wig2015-07-18 01:55 617  
[ ]PbU4-1_CGGCTATG-TAATCTTA_L001_R1_001.2x100mers.unique.scaffold_0499.wig2015-07-18 01:43 1.1K 
[TXT]SPAdes2.sh2015-07-19 16:42 33K 
[ ]biaurelia_V1-4_annotation_v1.problematic_scaffolds.gtf2015-07-19 02:00 19K 
[ ]biaurelia_V1-4_annotation_v1.scaffold_0496.gtf2015-07-19 01:28 9.9K 
[ ]biaurelia_V1-4_annotation_v1.scaffold_0499.gtf2015-07-19 01:28 9.2K 
[ ]contigs-100709_IRIS_0005-s_7_1_sequence.2x100mers.unique.RPKM2015-07-19 01:26 81K 
[ ]contigs-100727_IRIS_0006-pbia_1_sequence.2x100mers.unique.RPKM2015-07-19 01:26 81K 
[ ]contigs-PbU4-1_CGGCTATG-TAATCTTA_L001_R1_001.2x100mers.unique.RPKM2015-07-19 01:23 75K 
[ ]contigs.RPKM.files2015-07-19 01:26 284  
[ ]contigs.RPKM.table2015-07-19 01:28 139K 
[ ]idxstats.RNA.files2015-07-19 03:05 930  
[ ]idxstats.RNA.table2015-07-19 03:05 99K 
[TXT]map-MA.sh2015-07-20 17:48 125K 
[TXT]map-MP.sh2015-07-18 01:34 1.9K 
[TXT]map.sh2015-07-18 01:01 1.8K 
[ ]problematic_scaffolds2015-07-18 01:03 28  
[ ]problematic_scaffolds.fa2015-07-18 01:04 73K 
[ ]problematic_scaffolds.fa.fai2015-07-19 01:35 61  
[TXT]scaffold_0496.nr-BLAST.txt2015-07-18 01:07 2.9K 
[TXT]scaffold_0499.nr-BLAST.txt2015-07-18 01:08 14K 
[ ]z2015-07-20 20:29 17K 
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