segment_juncs v2.0.8 (3864) --------------------------- [samopen] SAM header is present: 697 sequences. Loading reference sequences... Loading CT868648...done Loading CT868646...done Loading CT868647...done Loading CT868644...done Loading CT868645...done Loading CT868643...done Loading CT868642...done Loading CT868639...done Loading CT868641...done Loading CT868638...done Loading CT868636...done Loading CT868637...done Loading CT868635...done Loading CT868634...done Loading CT868633...done Loading CT868632...done Loading CT868631...done Loading CT868630...done Loading CT868628...done Loading CT868627...done Loading CT868626...done Loading CT868625...done Loading CT868624...done Loading CT868623...done Loading CT868621...done Loading CT868622...done Loading CT868620...done Loading CT868619...done Loading CT868617...done Loading CT868616...done Loading CT868615...done Loading CT868614...done Loading CT868613...done Loading CT868612...done Loading CT868611...done Loading CT868610...done Loading CT868609...done Loading CT868608...done Loading CT868606...done Loading CT868605...done Loading CT868604...done Loading 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Loading CT868241...done Loading CT868230...done Loading CT868219...done Loading CT868208...done Loading CT868196...done Loading CT868185...done Loading CT868174...done Loading CT868163...done Loading CT868152...done Loading CT868141...done Loading CT868130...done Loading CT868119...done Loading CT868108...done Loading CT868097...done Loading CT868085...done Loading CT868074...done Loading CT868063...done Loading CT868052...done Loading CT868041...done Loading CT868030...done Loading CT868019...done Loading CT868008...done Loading CT867997...done Loading CT867986...done Loading CT868671...done Loading CT868660...done Loading CT868649...done Loading CT868540...done Loading CT868429...done Loading CT868318...done Loading CT868207...done Loading CT868096...done Loading CT867985...done Loading ...done >> Performing segment-search: Loading left segment hits... done. Loading right segment hits... done. found 131174 potential split-segment junctions found 17574 potential small deletions found 9053 potential small insertions >> Performing microexon-search: Aligning 7331419 microexon segments in 48823 windows window 100 window 200 window 300 window 400 window 500 window 600 window 700 window 800 window 900 window 1000 window 1100 window 1200 window 1300 window 1400 window 1500 window 1600 window 1700 window 1800 window 1900 window 2000 window 2100 window 2200 window 2300 window 2400 window 2500 window 2600 window 2700 window 2800 window 2900 window 3000 window 3100 window 3200 window 3300 window 3400 window 3500 window 3600 window 3700 window 3800 window 3900 window 4000 window 4100 window 4200 window 4300 window 4400 window 4500 window 4600 window 4700 window 4800 window 4900 window 5000 window 5100 window 5200 window 5300 window 5400 window 5500 window 5600 window 5700 window 5800 window 5900 window 6000 window 6100 window 6200 window 6300 window 6400 window 6500 window 6600 window 6700 window 6800 window 6900 window 7000 window 7100 window 7200 window 7300 window 7400 window 7500 window 7600 window 7700 window 7800 window 7900 window 8000 window 8100 window 8200 window 8300 window 8400 window 8500 window 8600 window 8700 window 8800 window 8900 window 9000 window 9100 window 9200 window 9300 window 9400 window 9500 window 9600 window 9700 window 9800 window 9900 window 10000 window 10100 window 10200 window 10300 window 10400 window 10500 window 10600 window 10700 window 10800 window 10900 window 11000 window 11100 window 11200 window 11300 window 11400 window 11500 window 11600 window 11700 window 11800 window 11900 window 12000 window 12100 window 12200 window 12300 window 12400 window 12500 window 12600 window 12700 window 12800 window 12900 window 13000 window 13100 window 13200 window 13300 window 13400 window 13500 window 13600 window 13700 window 13800 window 13900 window 14000 window 14100 window 14200 window 14300 window 14400 window 14500 window 14600 window 14700 window 14800 window 14900 window 15000 window 15100 window 15200 window 15300 window 15400 window 15500 window 15600 window 15700 window 15800 window 15900 window 16000 window 16100 window 16200 window 16300 window 16400 window 16500 window 16600 window 16700 window 16800 window 16900 window 17000 window 17100 window 17200 window 17300 window 17400 window 17500 window 17600 window 17700 window 17800 window 17900 window 18000 window 18100 window 18200 window 18300 window 18400 window 18500 window 18600 window 18700 window 18800 window 18900 window 19000 window 19100 window 19200 window 19300 window 19400 window 19500 window 19600 window 19700 window 19800 window 19900 window 20000 window 20100 window 20200 window 20300 window 20400 window 20500 window 20600 window 20700 window 20800 window 20900 window 21000 window 21100 window 21200 window 21300 window 21400 window 21500 window 21600 window 21700 window 21800 window 21900 window 22000 window 22100 window 22200 window 22300 window 22400 window 22500 window 22600 window 22700 window 22800 window 22900 window 23000 window 23100 window 23200 window 23300 window 23400 window 23500 window 23600 window 23700 window 23800 window 23900 window 24000 window 24100 window 24200 window 24300 window 24400 window 24500 window 24600 window 24700 window 24800 window 24900 window 25000 window 25100 window 25200 window 25300 window 25400 window 25500 window 25600 window 25700 window 25800 window 25900 window 26000 window 26100 window 26200 window 26300 window 26400 window 26500 window 26600 window 26700 window 26800 window 26900 window 27000 window 27100 window 27200 window 27300 window 27400 window 27500 window 27600 window 27700 window 27800 window 27900 window 28000 window 28100 window 28200 window 28300 window 28400 window 28500 window 28600 window 28700 window 28800 window 28900 window 29000 window 29100 window 29200 window 29300 window 29400 window 29500 window 29600 window 29700 window 29800 window 29900 window 30000 window 30100 window 30200 window 30300 window 30400 window 30500 window 30600 window 30700 window 30800 window 30900 window 31000 window 31100 window 31200 window 31300 window 31400 window 31500 window 31600 window 31700 window 31800 window 31900 window 32000 window 32100 window 32200 window 32300 window 32400 window 32500 window 32600 window 32700 window 32800 window 32900 window 33000 window 33100 window 33200 window 33300 window 33400 window 33500 window 33600 window 33700 window 33800 window 33900 window 34000 window 34100 window 34200 window 34300 window 34400 window 34500 window 34600 window 34700 window 34800 window 34900 window 35000 window 35100 window 35200 window 35300 window 35400 window 35500 window 35600 window 35700 window 35800 window 35900 window 36000 window 36100 window 36200 window 36300 window 36400 window 36500 window 36600 window 36700 window 36800 window 36900 window 37000 window 37100 window 37200 window 37300 window 37400 window 37500 window 37600 window 37700 window 37800 window 37900 window 38000 window 38100 window 38200 window 38300 window 38400 window 38500 window 38600 window 38700 window 38800 window 38900 window 39000 window 39100 window 39200 window 39300 window 39400 window 39500 window 39600 window 39700 window 39800 window 39900 window 40000 window 40100 window 40200 window 40300 window 40400 window 40500 window 40600 window 40700 window 40800 window 40900 window 41000 window 41100 window 41200 window 41300 window 41400 window 41500 window 41600 window 41700 window 41800 window 41900 window 42000 window 42100 window 42200 window 42300 window 42400 window 42500 window 42600 window 42700 window 42800 window 42900 window 43000 window 43100 window 43200 window 43300 window 43400 window 43500 window 43600 window 43700 window 43800 window 43900 window 44000 window 44100 window 44200 window 44300 window 44400 window 44500 window 44600 window 44700 window 44800 window 44900 window 45000 window 45100 window 45200 window 45300 window 45400 window 45500 window 45600 window 45700 window 45800 window 45900 window 46000 window 46100 window 46200 window 46300 window 46400 window 46500 window 46600 window 46700 window 46800 window 46900 window 47000 window 47100 window 47200 window 47300 window 47400 window 47500 window 47600 window 47700 window 47800 window 47900 window 48000 window 48100 window 48200 window 48300 window 48400 window 48500 window 48600 window 48700 window 48800 Checked 14662838 segments against 48823 windows for microexon junctions Found 9214 potential microexon junctions found 9214 potential junctions Reported 136157 total potential splices Reporting 17574 potential deletions... Reporting 9053 potential insertions... Reporting potential fusions...