cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_102_83_11_13.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_102_83_11_13.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_102_83_11_13.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_102_83_11_13.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_10V.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_10V.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_10V.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_10V.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_10_13_2233.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_10_13_2233.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_10_13_2233.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_10_13_2233.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_11_13_2233.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_11_13_2233.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_11_13_2233.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_11_13_2233.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_12D1.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_12D1.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_12D1.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_12D1.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_12V.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_12V.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_12V.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_12V.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_172.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_172.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_172.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_172.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_1D1.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_1D1.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_1D1.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_1D1.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_1D2.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_1D2.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_1D2.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_1D2.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_1V.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_1V.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_1V.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_1V.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_209_13.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_209_13.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_209_13.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_209_13.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_219_11.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_219_11.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_219_11.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_219_11.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_227.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_227.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_227.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_227.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_2D1.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_2D1.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_2D1.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_2D1.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_2D2.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_2D2.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_2D2.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_2D2.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_2V.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_2V.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_2V.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_2V.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_328.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_328.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_328.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_328.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_4D1.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_4D1.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_4D1.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_4D1.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_4D2.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_4D2.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_4D2.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_4D2.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_4D_2_14_16_12.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_4D_2_14_16_12.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_4D_2_14_16_12.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_4D_2_14_16_12.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_55_8.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_55_8.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_55_8.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_55_8.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_6D1.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_6D1.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_6D1.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_6D1.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_6D2.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_6D2.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_6D2.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_6D2.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_6V.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_6V.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_6V.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_6V.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_8D1.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_8D1.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_8D1.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_8D1.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_8V.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_8V.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_8V.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_8V.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_A39.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_A39.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_A39.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_A39.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_BM43_21_13.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_BM43_21_13.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_BM43_21_13.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_BM43_21_13.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_BM4_13_10_13.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_BM4_13_10_13.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_BM4_13_10_13.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_BM4_13_10_13.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_JS3_21_13.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_JS3_21_13.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_JS3_21_13.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_JS3_21_13.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_K412.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_K412.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_K412.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_K412.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_M2_21_13.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_M2_21_13.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_M2_21_13.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_M2_21_13.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_M3_10_13.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_M3_10_13.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_M3_10_13.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_M3_10_13.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_MPF1.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_MPF1.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_MPF1.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_MPF1.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_NiA2_21_13.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_NiA2_21_13.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_NiA2_21_13.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_NiA2_21_13.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_NiA3_10_13.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_NiA3_10_13.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_NiA3_10_13.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_NiA3_10_13.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_PnO_165.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_PnO_165.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_PnO_165.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_PnO_165.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_PnO_1653_11_13.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_PnO_1653_11_13.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_PnO_1653_11_13.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_PnO_1653_11_13.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_TE3_10_13.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_TE3_10_13.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_TE3_10_13.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_TE3_10_13.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_TE3_11_13.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_TE3_11_13.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_TE3_11_13.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_TE3_11_13.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_TE3_21_13.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_TE3_21_13.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_TE3_21_13.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_TE3_21_13.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_bi.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_bi.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_bi.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_bi.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_blank.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_blank.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_blank.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_blank.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_c3d_1.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_c3d_1.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_c3d_1.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_c3d_1.end2.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_c3d_2.end1.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_c3d_2.end1.100mers.fastq.bz2 &
cd /N/dc2/projects/marinovg/2015-05-06-data; bzip2 -cd Sample_c3d_2.end2.fastq.bz2 | python /N/dc2/projects/marinovg/code/trimfastq.py - 100 -stdout | bzip2 > Sample_c3d_2.end2.100mers.fastq.bz2 &