cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-biaurelia-Sample_2V.2x100mers.a.e200.offrate1.bam Paramecium-biaurelia-Sample_2V.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-biaurelia-Sample_bi.2x100mers.a.e200.offrate1.bam Paramecium-biaurelia-Sample_bi.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-biaurelia-Sample_2D1.2x100mers.a.e200.offrate1.bam Paramecium-biaurelia-Sample_2D1.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-biaurelia-Sample_2D2.2x100mers.a.e200.offrate1.bam Paramecium-biaurelia-Sample_2D2.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-caudatum-Sample_c3d_1.2x100mers.a.e200.offrate1.bam Paramecium-caudatum-Sample_c3d_1.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-caudatum-Sample_c3d_2.2x100mers.a.e200.offrate1.bam Paramecium-caudatum-Sample_c3d_2.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-caudatum-Sample_MPF1.2x100mers.a.e200.offrate1.bam Paramecium-caudatum-Sample_MPF1.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-primaurelia-Sample_1V.2x100mers.a.e200.offrate1.bam Paramecium-primaurelia-Sample_1V.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-primaurelia-Sample_1D1.2x100mers.a.e200.offrate1.bam Paramecium-primaurelia-Sample_1D1.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-primaurelia-Sample_1D2.2x100mers.a.e200.offrate1.bam Paramecium-primaurelia-Sample_1D2.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-sexaurelia-Sample_6D1.2x100mers.a.e200.offrate1.bam Paramecium-sexaurelia-Sample_6D1.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-sexaurelia-Sample_6D2.2x100mers.a.e200.offrate1.bam Paramecium-sexaurelia-Sample_6D2.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-sexaurelia-Sample_6V.2x100mers.a.e200.offrate1.bam Paramecium-sexaurelia-Sample_6V.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-teraurelia-Sample_4D_2_14_16_12.2x100mers.a.e200.offrate1.bam Paramecium-teraurelia-Sample_4D_2_14_16_12.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-teraurelia-Sample_4D1.2x100mers.a.e200.offrate1.bam Paramecium-teraurelia-Sample_4D1.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-teraurelia-Sample_4D2.2x100mers.a.e200.offrate1.bam Paramecium-teraurelia-Sample_4D2.2x100mers.a.e200.offrate1.sorted
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; samtools sort Paramecium-teraurelia-Sample_172.2x100mers.a.e200.offrate1.bam Paramecium-teraurelia-Sample_172.2x100mers.a.e200.offrate1.sorted