cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -evalue 1e-10 -db /N/dc2/projects/marinovg/genomes/Ciliates/Paramecium_biaurelia_V1-4/sequence/biaurelia_V1-4_assembly_v1.blastdb -query Sample_blank-SPAdes-3.5.0/contigs.min1000bp.fasta -outfmt 6 -num_threads 16 > Sample_blank-SPAdes-3.5.0.min1000bp-vs-Paramecium_biaurelia_V1-4.e10e-10.blastn 
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -evalue 1e-10 -db /N/dc2/projects/marinovg/genomes/Ciliates/Paramecium_caudatum_43c3d/sequence/caudatum_43c3d_assembly_v1.blastdb -query Sample_blank-SPAdes-3.5.0/contigs.min1000bp.fasta -outfmt 6 -num_threads 16 > Sample_blank-SPAdes-3.5.0.min1000bp-vs-Paramecium_caudatum_43c3d.e10e-10.blastn 
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -evalue 1e-10 -db /N/dc2/projects/marinovg/genomes/Ciliates/Paramecium_multimicronucleatum_MO3c4/sequence/multimicronucleatum_MO3c4_assembly_v1.blastdb -query Sample_blank-SPAdes-3.5.0/contigs.min1000bp.fasta -outfmt 6 -num_threads 16 > Sample_blank-SPAdes-3.5.0.min1000bp-vs-Paramecium_multimicronucleatum_MO3c4.e10e-10.blastn 
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -evalue 1e-10 -db /N/dc2/projects/marinovg/genomes/Ciliates/Paramecium_octaurelia_K8_CA1/sequence/Octaurelia_K8_CA1.scf.blastdb -query Sample_blank-SPAdes-3.5.0/contigs.min1000bp.fasta -outfmt 6 -num_threads 16 > Sample_blank-SPAdes-3.5.0.min1000bp-vs-Paramecium_octaurelia_K8_CA1.e10e-10.blastn 
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -evalue 1e-10 -db /N/dc2/projects/marinovg/genomes/Ciliates/Paramecium_pentaurelia_87E+87O/sequence/pentaurelia_87E+87O_SOAPassembly_draft.blastdb -query Sample_blank-SPAdes-3.5.0/contigs.min1000bp.fasta -outfmt 6 -num_threads 16 > Sample_blank-SPAdes-3.5.0.min1000bp-vs-Paramecium_pentaurelia_87E+87O.e10e-10.blastn 
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -evalue 1e-10 -db /N/dc2/projects/marinovg/genomes/Ciliates/Paramecium_primaurelia_Ir4-2/sequence/primaurelia_Ir4-2_assembly_v1.blastdb -query Sample_blank-SPAdes-3.5.0/contigs.min1000bp.fasta -outfmt 6 -num_threads 16 > Sample_blank-SPAdes-3.5.0.min1000bp-vs-Paramecium_primaurelia_Ir4-2.e10e-10.blastn 
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -evalue 1e-10 -db /N/dc2/projects/marinovg/genomes/Ciliates/Paramecium_sexaurelia_AZ8-4/sequence/sexaurelia_AZ8-4_assembly_v1.blastdb -query Sample_blank-SPAdes-3.5.0/contigs.min1000bp.fasta -outfmt 6 -num_threads 16 > Sample_blank-SPAdes-3.5.0.min1000bp-vs-Paramecium_sexaurelia_AZ8-4.e10e-10.blastn 
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -evalue 1e-10 -db /N/dc2/projects/marinovg/genomes/Ciliates/Paramecium_tetraurelia.GCA_000165425/sequence/Paramecium_tetraurelia.GCA_000165425.1.20.blastdb -query Sample_blank-SPAdes-3.5.0/contigs.min1000bp.fasta -outfmt 6 -num_threads 16 > Sample_blank-SPAdes-3.5.0.min1000bp-vs-Paramecium_tetraurelia.GCA_000165425.e10e-10.blastn 
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -evalue 1e-10 -db /N/dc2/projects/marinovg/genomes/Ciliates/Paramecium_tredecaurelia_209_CA2/sequence/tredecaurelia_209_CA2.scf.blastdb -query Sample_blank-SPAdes-3.5.0/contigs.min1000bp.fasta -outfmt 6 -num_threads 16 > Sample_blank-SPAdes-3.5.0.min1000bp-vs-Paramecium_tredecaurelia_209_CA2.e10e-10.blastn 
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -evalue 1e-10 -db Paramecium-Cd+Mmn+1+6+4.transcriptome.blastdb -query Sample_blank-SPAdes-3.5.0/contigs.min1000bp.fasta -outfmt 6 -num_threads 16 > Sample_blank-SPAdes-3.5.0.min1000bp-vs-Paramecium-Cd+Mmn+1+6+4.transcriptome.e10e-10.blastn &