cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; module load trinityrnaseq/2014-07-17; export PATH=/N/dc2/projects/marinovg/programs/bowtie-0.12.9:$PATH; Trinity --SS_lib_type RF --CPU 16 --full_cleanup --min_kmer_cov 5 --inchworm_cpu 16 --bflyCPU 16 --seqType fq --JM 100G --left Sample_blank.end1.fastq.bz2 --right Sample_blank.end2.fastq.bz2 --output trinityrnaseq_r2014-07-17-Sample_blank
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; module load trinityrnaseq/2014-07-17; export PATH=/N/dc2/projects/marinovg/programs/bowtie-0.12.9:$PATH; Trinity --SS_lib_type RF --CPU 16 --full_cleanup --min_kmer_cov 5 --inchworm_cpu 16 --bflyCPU 16 --seqType fq --JM 100G --left Sample_K412.end1.fastq.bz2 --right Sample_K412.end2.fastq.bz2 --output trinityrnaseq_r2014-07-17-Sample_K412