cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; python /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/spades.py --pe1-1 /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq/Sample_K412.end1.fastq.paired.trimmed.gz --pe1-2 /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq/Sample_K412.end2.fastq.paired.trimmed.gz -t 16 -o Sample_K412-SPAdes-3.5.0
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; python /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/spades.py --pe1-1 /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq/Sample_2V.end1.fastq.paired.trimmed.gz --pe1-2 /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq/Sample_2V.end2.fastq.paired.trimmed.gz -t 16 -o Sample_2V-SPAdes-3.5.0
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; python /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/spades.py --pe1-1 /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq/Sample_1V.end1.fastq.paired.trimmed.gz --pe1-2 /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq/Sample_1V.end2.fastq.paired.trimmed.gz -t 16 -o Sample_1V-SPAdes-3.5.0