GM18278-WGBS-HAIB-rep1+rep2.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Ignoring first 2 bp of Read 2 Ignoring last 2 bp of Read 2 Output specified: strand-specific (default) No overlapping methylation calls specified Processed 931028344 lines in total Total number of methylation call strings processed: 1862056688 Final Cytosine Methylation Report ================================= Total number of C's analysed: 33631714221 Total methylated C's in CpG context: 712685164 Total methylated C's in CHG context: 45769555 Total methylated C's in CHH context: 156629648 Total C to T conversions in CpG context: 716354720 Total C to T conversions in CHG context: 6998396926 Total C to T conversions in CHH context: 25001878208 C methylated in CpG context: 49.9% C methylated in CHG context: 0.6% C methylated in CHH context: 0.6%