H1-hESC-WGBS-HAIB-rep1+rep2.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Ignoring first 2 bp of Read 2 Ignoring last 2 bp of Read 2 Output specified: strand-specific (default) No overlapping methylation calls specified Processed 839776737 lines in total Total number of methylation call strings processed: 1679553474 Final Cytosine Methylation Report ================================= Total number of C's analysed: 30094364759 Total methylated C's in CpG context: 1068998835 Total methylated C's in CHG context: 154506306 Total methylated C's in CHH context: 255315910 Total C to T conversions in CpG context: 220588863 Total C to T conversions in CHG context: 6182844300 Total C to T conversions in CHH context: 22212110545 C methylated in CpG context: 82.9% C methylated in CHG context: 2.4% C methylated in CHH context: 1.1%