~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm ce11.pieces.1.fa > ce11.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm ce11.pieces.2.fa > ce11.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm ce11.pieces.3.fa > ce11.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm ce11.pieces.4.fa > ce11.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm ce11.pieces.5.fa > ce11.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm ce11.pieces.6.fa > ce11.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm ce11.pieces.7.fa > ce11.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.10.fa > Cryptophyte---Guillardia_theta.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.11.fa > Cryptophyte---Guillardia_theta.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.12.fa > Cryptophyte---Guillardia_theta.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.13.fa > Cryptophyte---Guillardia_theta.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.14.fa > Cryptophyte---Guillardia_theta.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.15.fa > Cryptophyte---Guillardia_theta.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.16.fa > Cryptophyte---Guillardia_theta.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.17.fa > Cryptophyte---Guillardia_theta.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.18.fa > Cryptophyte---Guillardia_theta.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.19.fa > Cryptophyte---Guillardia_theta.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.1.fa > Cryptophyte---Guillardia_theta.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.20.fa > Cryptophyte---Guillardia_theta.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.21.fa > Cryptophyte---Guillardia_theta.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.22.fa > Cryptophyte---Guillardia_theta.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.23.fa > Cryptophyte---Guillardia_theta.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.24.fa > Cryptophyte---Guillardia_theta.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.25.fa > Cryptophyte---Guillardia_theta.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.26.fa > Cryptophyte---Guillardia_theta.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.27.fa > Cryptophyte---Guillardia_theta.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.28.fa > Cryptophyte---Guillardia_theta.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.29.fa > Cryptophyte---Guillardia_theta.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.2.fa > Cryptophyte---Guillardia_theta.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.30.fa > Cryptophyte---Guillardia_theta.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.31.fa > Cryptophyte---Guillardia_theta.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.32.fa > Cryptophyte---Guillardia_theta.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.33.fa > Cryptophyte---Guillardia_theta.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.34.fa > Cryptophyte---Guillardia_theta.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.35.fa > Cryptophyte---Guillardia_theta.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.36.fa > Cryptophyte---Guillardia_theta.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.37.fa > Cryptophyte---Guillardia_theta.pieces.37.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.38.fa > Cryptophyte---Guillardia_theta.pieces.38.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.39.fa > Cryptophyte---Guillardia_theta.pieces.39.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.3.fa > Cryptophyte---Guillardia_theta.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.40.fa > Cryptophyte---Guillardia_theta.pieces.40.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.41.fa > Cryptophyte---Guillardia_theta.pieces.41.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.42.fa > Cryptophyte---Guillardia_theta.pieces.42.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.43.fa > Cryptophyte---Guillardia_theta.pieces.43.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.44.fa > Cryptophyte---Guillardia_theta.pieces.44.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.45.fa > Cryptophyte---Guillardia_theta.pieces.45.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.46.fa > Cryptophyte---Guillardia_theta.pieces.46.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.47.fa > Cryptophyte---Guillardia_theta.pieces.47.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.48.fa > Cryptophyte---Guillardia_theta.pieces.48.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.49.fa > Cryptophyte---Guillardia_theta.pieces.49.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.4.fa > Cryptophyte---Guillardia_theta.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.50.fa > Cryptophyte---Guillardia_theta.pieces.50.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.51.fa > Cryptophyte---Guillardia_theta.pieces.51.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.52.fa > Cryptophyte---Guillardia_theta.pieces.52.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.53.fa > Cryptophyte---Guillardia_theta.pieces.53.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.54.fa > Cryptophyte---Guillardia_theta.pieces.54.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.55.fa > Cryptophyte---Guillardia_theta.pieces.55.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.56.fa > Cryptophyte---Guillardia_theta.pieces.56.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.57.fa > Cryptophyte---Guillardia_theta.pieces.57.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.58.fa > Cryptophyte---Guillardia_theta.pieces.58.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.59.fa > Cryptophyte---Guillardia_theta.pieces.59.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.5.fa > Cryptophyte---Guillardia_theta.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.60.fa > Cryptophyte---Guillardia_theta.pieces.60.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.61.fa > Cryptophyte---Guillardia_theta.pieces.61.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.62.fa > Cryptophyte---Guillardia_theta.pieces.62.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.63.fa > Cryptophyte---Guillardia_theta.pieces.63.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.64.fa > Cryptophyte---Guillardia_theta.pieces.64.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.65.fa > Cryptophyte---Guillardia_theta.pieces.65.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.66.fa > Cryptophyte---Guillardia_theta.pieces.66.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.67.fa > Cryptophyte---Guillardia_theta.pieces.67.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.68.fa > Cryptophyte---Guillardia_theta.pieces.68.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.6.fa > Cryptophyte---Guillardia_theta.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.7.fa > Cryptophyte---Guillardia_theta.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.8.fa > Cryptophyte---Guillardia_theta.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Cryptophyte---Guillardia_theta.pieces.9.fa > Cryptophyte---Guillardia_theta.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.100.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.100.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.101.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.101.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.102.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.102.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.103.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.103.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.104.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.104.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.105.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.105.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.106.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.106.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.107.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.107.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.108.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.108.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.109.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.109.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.10.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.110.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.110.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.111.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.111.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.112.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.112.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.113.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.113.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.114.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.114.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.115.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.115.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.116.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.116.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.117.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.117.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.118.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.118.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.119.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.119.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.11.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.120.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.120.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.121.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.121.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.122.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.122.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.123.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.123.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.124.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.124.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.125.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.125.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.126.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.126.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.127.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.127.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.128.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.128.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.129.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.129.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.12.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.130.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.130.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.131.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.131.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.132.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.132.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.133.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.133.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.134.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.134.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.135.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.135.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.136.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.136.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.137.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.137.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.138.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.138.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.139.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.139.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.13.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.140.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.140.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.141.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.141.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.142.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.142.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.143.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.143.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.144.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.144.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.145.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.145.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.146.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.146.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.147.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.147.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.148.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.148.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.149.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.149.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.14.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.150.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.150.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.151.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.151.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.152.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.152.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.153.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.153.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.154.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.154.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.155.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.155.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.156.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.156.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.157.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.157.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.158.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.158.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.159.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.159.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.15.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.160.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.160.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.161.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.161.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.162.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.162.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.163.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.163.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.164.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.164.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.165.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.165.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.166.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.166.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.167.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.167.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.168.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.168.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.169.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.169.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.16.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.170.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.170.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.171.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.171.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.172.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.172.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.173.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.173.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.174.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.174.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.175.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.175.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.176.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.176.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.177.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.177.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.178.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.178.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.179.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.179.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.17.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.180.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.180.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.181.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.181.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.182.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.182.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.183.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.183.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.184.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.184.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.185.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.185.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.186.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.186.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.187.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.187.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.188.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.188.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.189.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.189.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.18.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.190.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.190.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.191.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.191.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.192.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.192.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.193.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.193.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.194.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.194.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.195.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.195.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.196.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.196.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.197.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.197.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.198.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.198.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.199.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.199.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.19.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.1.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.200.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.200.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.201.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.201.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.202.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.202.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.203.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.203.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.204.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.204.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.205.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.205.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.206.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.206.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.207.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.207.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.208.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.208.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.209.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.209.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.20.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.210.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.210.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.211.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.211.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.212.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.212.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.213.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.213.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.214.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.214.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.215.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.215.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.216.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.216.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.217.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.217.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.218.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.218.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.219.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.219.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.21.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.220.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.220.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.221.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.221.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.222.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.222.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.223.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.223.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.224.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.224.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.225.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.225.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.226.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.226.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.227.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.227.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.228.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.228.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.229.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.229.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.22.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.230.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.230.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.231.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.231.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.232.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.232.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.233.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.233.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.234.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.234.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.235.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.235.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.236.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.236.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.237.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.237.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.238.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.238.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.239.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.239.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.23.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.240.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.240.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.241.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.241.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.242.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.242.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.243.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.243.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.244.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.244.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.245.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.245.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.246.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.246.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.247.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.247.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.248.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.248.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.249.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.249.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.24.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.250.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.250.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.251.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.251.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.252.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.252.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.253.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.253.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.254.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.254.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.255.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.255.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.256.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.256.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.257.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.257.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.258.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.258.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.259.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.259.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.25.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.260.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.260.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.261.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.261.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.262.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.262.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.263.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.263.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.264.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.264.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.265.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.265.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.266.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.266.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.267.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.267.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.268.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.268.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.269.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.269.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.26.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.270.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.270.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.271.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.271.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.272.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.272.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.273.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.273.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.274.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.274.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.275.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.275.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.276.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.276.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.277.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.277.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.278.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.278.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.279.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.279.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.27.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.280.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.280.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.281.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.281.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.282.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.282.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.283.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.283.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.284.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.284.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.285.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.285.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.286.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.286.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.287.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.287.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.288.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.288.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.289.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.289.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.28.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.290.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.290.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.291.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.291.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.292.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.292.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.293.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.293.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.294.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.294.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.295.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.295.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.296.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.296.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.297.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.297.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.298.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.298.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.299.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.299.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.29.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.2.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.300.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.300.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.301.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.301.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.30.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.31.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.32.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.33.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.34.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.35.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.36.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.37.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.37.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.38.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.38.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.39.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.39.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.3.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.40.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.40.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.41.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.41.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.42.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.42.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.43.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.43.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.44.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.44.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.45.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.45.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.46.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.46.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.47.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.47.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.48.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.48.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.49.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.49.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.4.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.50.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.50.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.51.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.51.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.52.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.52.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.53.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.53.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.54.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.54.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.55.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.55.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.56.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.56.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.57.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.57.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.58.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.58.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.59.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.59.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.5.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.60.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.60.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.61.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.61.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.62.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.62.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.63.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.63.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.64.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.64.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.65.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.65.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.66.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.66.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.67.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.67.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.68.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.68.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.69.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.69.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.6.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.70.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.70.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.71.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.71.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.72.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.72.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.73.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.73.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.74.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.74.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.75.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.75.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.76.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.76.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.77.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.77.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.78.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.78.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.79.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.79.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.7.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.80.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.80.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.81.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.81.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.82.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.82.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.83.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.83.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.84.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.84.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.85.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.85.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.86.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.86.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.87.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.87.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.88.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.88.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.89.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.89.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.8.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.90.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.90.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.91.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.91.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.92.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.92.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.93.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.93.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.94.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.94.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.95.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.95.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.96.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.96.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.97.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.97.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.98.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.98.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.99.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.99.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.9.fa > Dinoflagellata---Symbiodinium_kawagutii_assembly.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.100.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.100.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.101.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.101.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.102.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.102.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.103.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.103.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.104.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.104.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.105.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.105.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.106.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.106.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.107.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.107.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.108.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.108.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.109.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.109.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.10.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.110.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.110.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.111.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.111.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.112.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.112.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.113.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.113.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.114.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.114.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.115.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.115.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.116.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.116.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.117.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.117.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.118.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.118.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.119.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.119.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.11.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.120.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.120.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.121.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.121.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.122.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.122.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.123.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.123.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.124.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.124.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.125.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.125.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.126.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.126.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.127.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.127.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.128.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.128.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.129.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.129.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.12.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.130.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.130.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.131.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.131.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.132.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.132.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.133.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.133.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.134.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.134.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.135.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.135.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.136.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.136.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.137.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.137.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.138.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.138.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.139.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.139.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.13.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.140.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.140.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.141.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.141.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.142.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.142.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.143.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.143.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.144.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.144.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.145.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.145.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.146.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.146.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.147.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.147.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.148.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.148.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.149.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.149.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.14.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.150.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.150.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.151.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.151.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.152.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.152.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.153.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.153.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.154.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.154.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.155.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.155.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.156.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.156.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.157.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.157.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.158.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.158.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.159.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.159.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.15.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.160.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.160.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.161.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.161.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.162.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.162.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.163.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.163.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.164.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.164.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.165.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.165.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.166.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.166.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.167.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.167.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.168.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.168.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.169.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.169.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.16.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.170.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.170.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.171.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.171.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.172.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.172.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.173.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.173.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.174.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.174.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.175.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.175.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.176.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.176.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.177.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.177.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.178.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.178.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.179.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.179.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.17.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.180.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.180.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.181.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.181.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.182.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.182.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.183.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.183.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.184.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.184.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.185.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.185.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.186.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.186.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.187.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.187.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.188.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.188.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.189.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.189.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.18.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.190.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.190.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.191.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.191.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.192.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.192.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.193.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.193.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.194.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.194.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.19.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.1.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.20.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.21.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.22.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.23.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.24.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.25.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.26.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.27.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.28.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.29.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.2.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.30.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.31.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.32.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.33.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.34.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.35.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.36.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.37.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.37.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.38.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.38.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.39.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.39.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.3.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.40.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.40.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.41.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.41.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.42.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.42.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.43.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.43.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.44.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.44.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.45.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.45.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.46.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.46.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.47.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.47.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.48.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.48.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.49.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.49.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.4.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.50.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.50.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.51.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.51.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.52.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.52.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.53.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.53.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.54.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.54.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.55.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.55.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.56.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.56.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.57.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.57.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.58.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.58.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.59.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.59.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.5.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.60.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.60.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.61.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.61.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.62.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.62.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.63.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.63.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.64.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.64.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.65.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.65.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.66.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.66.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.67.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.67.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.68.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.68.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.69.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.69.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.6.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.70.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.70.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.71.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.71.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.72.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.72.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.73.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.73.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.74.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.74.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.75.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.75.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.76.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.76.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.77.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.77.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.78.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.78.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.79.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.79.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.7.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.80.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.80.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.81.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.81.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.82.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.82.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.83.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.83.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.84.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.84.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.85.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.85.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.86.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.86.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.87.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.87.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.88.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.88.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.89.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.89.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.8.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.90.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.90.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.91.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.91.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.92.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.92.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.93.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.93.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.94.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.94.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.95.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.95.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.96.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.96.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.97.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.97.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.98.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.98.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.99.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.99.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.9.fa > Dinoflagellata---Symbiodinium_microadriaticum_v1.0.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.100.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.100.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.101.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.101.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.102.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.102.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.103.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.103.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.104.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.104.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.105.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.105.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.106.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.106.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.107.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.107.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.108.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.108.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.109.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.109.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.10.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.110.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.110.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.111.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.111.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.112.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.112.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.113.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.113.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.114.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.114.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.115.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.115.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.116.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.116.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.117.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.117.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.118.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.118.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.119.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.119.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.11.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.120.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.120.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.121.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.121.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.122.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.122.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.123.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.123.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.124.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.124.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.125.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.125.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.126.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.126.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.127.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.127.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.128.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.128.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.129.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.129.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.12.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.130.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.130.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.131.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.131.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.132.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.132.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.133.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.133.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.134.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.134.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.135.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.135.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.136.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.136.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.137.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.137.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.138.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.138.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.139.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.139.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.13.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.140.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.140.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.141.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.141.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.142.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.142.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.143.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.143.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.144.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.144.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.145.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.145.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.146.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.146.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.147.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.147.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.148.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.148.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.149.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.149.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.14.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.150.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.150.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.151.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.151.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.152.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.152.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.153.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.153.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.154.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.154.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.155.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.155.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.156.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.156.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.157.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.157.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.158.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.158.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.159.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.159.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.15.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.160.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.160.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.161.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.161.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.162.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.162.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.163.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.163.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.164.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.164.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.165.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.165.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.166.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.166.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.167.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.167.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.168.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.168.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.169.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.169.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.16.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.170.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.170.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.171.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.171.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.172.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.172.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.173.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.173.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.174.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.174.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.175.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.175.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.176.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.176.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.177.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.177.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.178.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.178.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.179.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.179.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.17.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.180.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.180.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.181.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.181.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.182.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.182.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.183.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.183.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.184.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.184.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.185.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.185.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.186.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.186.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.187.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.187.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.188.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.188.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.189.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.189.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.18.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.190.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.190.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.191.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.191.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.192.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.192.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.193.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.193.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.194.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.194.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.195.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.195.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.196.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.196.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.197.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.197.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.198.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.198.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.199.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.199.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.19.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.1.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.200.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.200.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.201.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.201.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.202.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.202.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.203.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.203.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.204.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.204.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.205.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.205.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.206.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.206.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.207.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.207.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.208.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.208.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.209.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.209.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.20.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.210.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.210.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.211.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.211.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.212.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.212.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.213.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.213.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.214.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.214.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.215.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.215.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.216.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.216.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.217.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.217.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.218.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.218.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.219.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.219.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.21.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.22.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.23.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.24.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.25.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.26.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.27.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.28.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.29.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.2.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.30.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.31.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.32.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.33.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.34.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.35.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.36.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.37.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.37.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.38.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.38.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.39.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.39.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.3.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.40.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.40.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.41.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.41.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.42.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.42.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.43.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.43.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.44.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.44.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.45.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.45.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.46.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.46.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.47.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.47.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.48.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.48.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.49.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.49.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.4.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.50.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.50.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.51.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.51.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.52.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.52.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.53.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.53.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.54.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.54.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.55.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.55.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.56.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.56.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.57.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.57.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.58.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.58.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.59.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.59.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.5.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.60.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.60.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.61.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.61.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.62.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.62.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.63.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.63.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.64.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.64.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.65.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.65.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.66.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.66.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.67.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.67.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.68.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.68.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.69.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.69.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.6.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.70.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.70.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.71.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.71.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.72.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.72.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.73.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.73.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.74.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.74.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.75.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.75.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.76.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.76.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.77.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.77.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.78.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.78.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.79.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.79.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.7.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.80.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.80.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.81.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.81.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.82.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.82.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.83.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.83.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.84.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.84.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.85.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.85.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.86.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.86.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.87.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.87.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.88.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.88.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.89.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.89.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.8.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.90.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.90.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.91.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.91.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.92.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.92.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.93.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.93.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.94.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.94.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.95.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.95.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.96.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.96.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.97.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.97.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.98.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.98.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.99.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.99.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.9.fa > Dinoflagellata---Symbiodinium_minutum_Clade_B1_Ver1.120123.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.100.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.100.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.101.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.101.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.102.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.102.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.103.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.103.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.104.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.104.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.105.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.105.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.106.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.106.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.107.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.107.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.108.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.108.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.109.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.109.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.10.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.110.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.110.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.111.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.111.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.112.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.112.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.113.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.113.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.114.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.114.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.115.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.115.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.116.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.116.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.117.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.117.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.118.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.118.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.119.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.119.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.11.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.120.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.120.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.121.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.121.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.122.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.122.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.123.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.123.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.124.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.124.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.125.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.125.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.126.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.126.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.127.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.127.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.128.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.128.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.129.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.129.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.12.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.130.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.130.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.131.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.131.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.132.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.132.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.133.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.133.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.134.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.134.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.135.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.135.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.136.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.136.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.137.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.137.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.138.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.138.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.139.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.139.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.13.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.140.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.140.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.141.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.141.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.142.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.142.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.143.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.143.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.144.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.144.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.145.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.145.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.146.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.146.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.147.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.147.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.148.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.148.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.149.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.149.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.14.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.150.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.150.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.151.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.151.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.152.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.152.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.153.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.153.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.154.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.154.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.155.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.155.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.156.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.156.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.157.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.157.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.158.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.158.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.159.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.159.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.15.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.160.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.160.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.161.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.161.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.162.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.162.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.163.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.163.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.164.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.164.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.165.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.165.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.166.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.166.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.167.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.167.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.168.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.168.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.169.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.169.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.16.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.170.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.170.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.171.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.171.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.172.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.172.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.173.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.173.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.174.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.174.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.175.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.175.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.176.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.176.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.177.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.177.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.178.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.178.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.179.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.179.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.17.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.180.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.180.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.181.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.181.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.182.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.182.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.183.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.183.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.184.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.184.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.185.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.185.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.186.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.186.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.187.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.187.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.188.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.188.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.189.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.189.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.18.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.190.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.190.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.191.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.191.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.192.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.192.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.193.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.193.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.194.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.194.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.195.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.195.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.196.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.196.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.197.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.197.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.198.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.198.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.199.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.199.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.19.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.1.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.200.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.200.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.201.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.201.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.202.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.202.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.203.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.203.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.20.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.21.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.22.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.23.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.24.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.25.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.26.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.27.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.28.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.29.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.2.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.30.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.31.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.32.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.33.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.34.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.35.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.36.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.37.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.37.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.38.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.38.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.39.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.39.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.3.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.40.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.40.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.41.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.41.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.42.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.42.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.43.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.43.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.44.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.44.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.45.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.45.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.46.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.46.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.47.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.47.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.48.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.48.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.49.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.49.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.4.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.50.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.50.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.51.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.51.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.52.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.52.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.53.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.53.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.54.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.54.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.55.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.55.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.56.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.56.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.57.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.57.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.58.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.58.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.59.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.59.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.5.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.60.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.60.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.61.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.61.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.62.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.62.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.63.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.63.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.64.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.64.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.65.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.65.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.66.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.66.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.67.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.67.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.68.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.68.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.69.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.69.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.6.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.70.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.70.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.71.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.71.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.72.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.72.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.73.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.73.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.74.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.74.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.75.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.75.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.76.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.76.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.77.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.77.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.78.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.78.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.79.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.79.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.7.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.80.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.80.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.81.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.81.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.82.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.82.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.83.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.83.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.84.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.84.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.85.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.85.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.86.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.86.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.87.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.87.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.88.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.88.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.89.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.89.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.8.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.90.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.90.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.91.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.91.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.92.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.92.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.93.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.93.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.94.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.94.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.95.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.95.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.96.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.96.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.97.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.97.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.98.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.98.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.99.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.99.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.9.fa > Dinoflagellata---Symbiodinium_sp._clade_A_Y106-SymA_ver_1.0.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.100.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.100.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.101.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.101.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.102.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.102.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.103.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.103.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.104.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.104.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.105.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.105.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.106.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.106.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.107.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.107.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.108.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.108.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.109.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.109.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.10.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.110.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.110.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.111.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.111.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.112.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.112.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.113.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.113.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.114.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.114.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.115.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.115.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.116.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.116.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.117.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.117.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.118.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.118.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.119.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.119.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.11.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.120.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.120.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.121.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.121.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.122.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.122.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.123.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.123.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.124.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.124.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.125.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.125.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.126.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.126.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.127.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.127.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.128.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.128.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.129.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.129.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.12.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.130.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.130.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.131.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.131.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.132.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.132.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.13.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.14.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.15.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.16.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.17.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.18.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.19.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.1.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.20.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.21.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.22.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.23.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.24.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.25.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.26.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.27.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.28.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.29.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.2.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.30.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.31.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.32.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.33.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.34.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.35.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.36.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.37.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.37.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.38.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.38.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.39.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.39.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.3.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.40.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.40.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.41.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.41.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.42.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.42.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.43.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.43.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.44.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.44.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.45.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.45.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.46.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.46.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.47.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.47.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.48.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.48.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.49.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.49.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.4.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.50.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.50.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.51.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.51.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.52.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.52.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.53.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.53.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.54.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.54.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.55.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.55.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.56.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.56.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.57.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.57.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.58.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.58.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.59.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.59.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.5.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.60.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.60.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.61.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.61.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.62.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.62.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.63.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.63.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.64.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.64.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.65.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.65.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.66.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.66.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.67.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.67.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.68.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.68.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.69.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.69.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.6.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.70.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.70.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.71.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.71.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.72.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.72.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.73.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.73.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.74.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.74.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.75.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.75.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.76.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.76.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.77.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.77.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.78.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.78.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.79.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.79.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.7.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.80.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.80.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.81.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.81.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.82.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.82.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.83.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.83.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.84.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.84.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.85.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.85.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.86.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.86.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.87.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.87.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.88.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.88.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.89.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.89.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.8.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.90.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.90.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.91.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.91.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.92.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.92.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.93.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.93.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.94.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.94.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.95.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.95.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.96.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.96.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.97.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.97.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.98.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.98.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.99.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.99.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.9.fa > Dinoflagellata---Symbiodinium_sp._clade_C_Y103-SymC_ver_1.0.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.10.fa > Diplomonada---Giardia_lamblia.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.11.fa > Diplomonada---Giardia_lamblia.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.12.fa > Diplomonada---Giardia_lamblia.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.13.fa > Diplomonada---Giardia_lamblia.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.14.fa > Diplomonada---Giardia_lamblia.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.15.fa > Diplomonada---Giardia_lamblia.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.16.fa > Diplomonada---Giardia_lamblia.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.17.fa > Diplomonada---Giardia_lamblia.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.18.fa > Diplomonada---Giardia_lamblia.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.19.fa > Diplomonada---Giardia_lamblia.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.1.fa > Diplomonada---Giardia_lamblia.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.20.fa > Diplomonada---Giardia_lamblia.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.21.fa > Diplomonada---Giardia_lamblia.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.22.fa > Diplomonada---Giardia_lamblia.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.23.fa > Diplomonada---Giardia_lamblia.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.24.fa > Diplomonada---Giardia_lamblia.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.25.fa > Diplomonada---Giardia_lamblia.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.26.fa > Diplomonada---Giardia_lamblia.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.27.fa > Diplomonada---Giardia_lamblia.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.28.fa > Diplomonada---Giardia_lamblia.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.29.fa > Diplomonada---Giardia_lamblia.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.2.fa > Diplomonada---Giardia_lamblia.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.30.fa > Diplomonada---Giardia_lamblia.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.31.fa > Diplomonada---Giardia_lamblia.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.32.fa > Diplomonada---Giardia_lamblia.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.33.fa > Diplomonada---Giardia_lamblia.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.34.fa > Diplomonada---Giardia_lamblia.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.35.fa > Diplomonada---Giardia_lamblia.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.36.fa > Diplomonada---Giardia_lamblia.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.37.fa > Diplomonada---Giardia_lamblia.pieces.37.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.38.fa > Diplomonada---Giardia_lamblia.pieces.38.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.39.fa > Diplomonada---Giardia_lamblia.pieces.39.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.3.fa > Diplomonada---Giardia_lamblia.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.40.fa > Diplomonada---Giardia_lamblia.pieces.40.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.41.fa > Diplomonada---Giardia_lamblia.pieces.41.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.42.fa > Diplomonada---Giardia_lamblia.pieces.42.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.43.fa > Diplomonada---Giardia_lamblia.pieces.43.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.44.fa > Diplomonada---Giardia_lamblia.pieces.44.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.45.fa > Diplomonada---Giardia_lamblia.pieces.45.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.46.fa > Diplomonada---Giardia_lamblia.pieces.46.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.47.fa > Diplomonada---Giardia_lamblia.pieces.47.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.48.fa > Diplomonada---Giardia_lamblia.pieces.48.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.49.fa > Diplomonada---Giardia_lamblia.pieces.49.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.4.fa > Diplomonada---Giardia_lamblia.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.50.fa > Diplomonada---Giardia_lamblia.pieces.50.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.51.fa > Diplomonada---Giardia_lamblia.pieces.51.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.52.fa > Diplomonada---Giardia_lamblia.pieces.52.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.53.fa > Diplomonada---Giardia_lamblia.pieces.53.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.54.fa > Diplomonada---Giardia_lamblia.pieces.54.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.55.fa > Diplomonada---Giardia_lamblia.pieces.55.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.56.fa > Diplomonada---Giardia_lamblia.pieces.56.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.57.fa > Diplomonada---Giardia_lamblia.pieces.57.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.58.fa > Diplomonada---Giardia_lamblia.pieces.58.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.59.fa > Diplomonada---Giardia_lamblia.pieces.59.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.5.fa > Diplomonada---Giardia_lamblia.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.60.fa > Diplomonada---Giardia_lamblia.pieces.60.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.61.fa > Diplomonada---Giardia_lamblia.pieces.61.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.62.fa > Diplomonada---Giardia_lamblia.pieces.62.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.6.fa > Diplomonada---Giardia_lamblia.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.7.fa > Diplomonada---Giardia_lamblia.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.8.fa > Diplomonada---Giardia_lamblia.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Giardia_lamblia.pieces.9.fa > Diplomonada---Giardia_lamblia.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.100.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.100.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.101.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.101.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.102.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.102.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.103.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.103.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.104.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.104.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.105.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.105.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.106.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.106.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.107.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.107.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.108.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.108.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.109.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.109.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.10.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.110.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.110.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.111.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.111.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.112.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.112.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.113.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.113.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.114.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.114.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.115.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.115.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.116.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.116.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.117.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.117.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.118.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.118.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.119.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.119.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.11.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.120.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.120.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.121.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.121.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.122.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.122.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.123.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.123.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.124.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.124.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.125.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.125.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.126.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.126.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.127.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.127.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.128.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.128.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.129.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.129.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.12.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.130.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.130.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.131.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.131.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.132.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.132.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.133.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.133.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.134.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.134.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.135.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.135.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.136.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.136.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.137.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.137.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.138.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.138.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.139.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.139.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.13.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.140.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.140.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.141.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.141.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.142.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.142.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.143.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.143.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.144.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.144.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.145.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.145.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.146.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.146.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.147.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.147.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.148.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.148.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.149.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.149.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.14.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.150.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.150.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.151.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.151.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.152.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.152.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.153.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.153.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.154.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.154.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.155.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.155.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.156.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.156.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.157.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.157.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.158.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.158.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.159.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.159.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.15.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.160.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.160.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.161.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.161.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.162.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.162.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.163.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.163.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.164.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.164.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.165.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.165.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.166.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.166.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.167.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.167.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.168.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.168.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.169.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.169.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.16.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.170.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.170.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.171.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.171.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.172.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.172.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.173.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.173.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.174.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.174.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.175.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.175.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.176.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.176.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.177.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.177.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.178.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.178.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.179.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.179.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.17.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.180.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.180.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.181.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.181.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.182.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.182.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.183.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.183.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.184.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.184.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.185.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.185.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.186.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.186.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.187.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.187.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.188.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.188.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.189.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.189.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.18.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.190.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.190.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.191.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.191.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.192.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.192.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.193.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.193.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.194.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.194.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.195.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.195.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.196.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.196.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.197.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.197.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.198.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.198.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.199.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.199.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.19.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.1.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.200.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.200.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.201.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.201.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.202.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.202.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.203.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.203.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.204.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.204.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.205.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.205.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.206.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.206.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.207.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.207.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.208.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.208.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.209.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.209.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.20.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.210.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.210.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.211.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.211.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.212.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.212.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.213.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.213.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.214.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.214.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.215.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.215.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.216.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.216.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.217.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.217.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.218.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.218.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.219.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.219.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.21.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.220.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.220.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.221.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.221.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.222.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.222.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.223.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.223.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.224.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.224.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.225.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.225.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.226.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.226.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.227.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.227.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.228.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.228.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.229.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.229.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.22.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.230.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.230.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.231.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.231.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.232.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.232.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.233.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.233.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.234.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.234.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.235.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.235.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.236.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.236.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.237.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.237.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.238.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.238.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.239.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.239.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.23.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.240.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.240.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.241.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.241.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.242.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.242.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.243.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.243.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.244.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.244.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.245.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.245.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.246.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.246.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.247.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.247.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.248.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.248.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.249.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.249.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.24.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.250.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.250.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.251.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.251.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.252.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.252.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.253.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.253.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.254.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.254.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.255.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.255.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.256.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.256.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.257.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.257.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.258.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.258.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.259.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.259.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.25.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.260.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.260.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.261.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.261.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.262.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.262.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.263.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.263.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.264.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.264.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.265.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.265.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.266.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.266.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.267.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.267.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.268.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.268.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.269.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.269.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.26.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.270.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.270.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.271.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.271.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.272.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.272.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.273.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.273.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.274.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.274.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.275.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.275.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.276.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.276.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.277.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.277.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.278.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.278.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.279.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.279.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.27.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.280.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.280.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.281.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.281.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.282.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.282.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.283.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.283.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.284.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.284.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.285.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.285.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.286.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.286.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.287.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.287.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.288.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.288.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.289.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.289.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.28.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.290.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.290.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.29.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.2.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.30.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.31.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.32.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.33.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.34.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.35.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.36.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.37.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.37.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.38.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.38.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.39.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.39.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.3.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.40.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.40.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.41.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.41.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.42.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.42.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.43.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.43.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.44.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.44.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.45.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.45.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.46.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.46.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.47.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.47.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.48.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.48.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.49.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.49.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.4.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.50.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.50.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.51.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.51.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.52.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.52.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.53.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.53.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.54.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.54.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.55.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.55.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.56.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.56.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.57.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.57.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.58.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.58.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.59.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.59.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.5.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.60.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.60.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.61.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.61.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.62.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.62.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.63.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.63.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.64.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.64.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.65.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.65.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.66.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.66.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.67.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.67.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.68.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.68.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.69.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.69.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.6.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.70.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.70.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.71.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.71.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.72.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.72.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.73.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.73.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.74.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.74.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.75.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.75.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.76.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.76.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.77.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.77.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.78.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.78.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.79.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.79.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.7.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.80.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.80.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.81.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.81.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.82.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.82.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.83.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.83.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.84.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.84.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.85.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.85.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.86.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.86.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.87.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.87.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.88.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.88.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.89.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.89.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.8.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.90.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.90.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.91.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.91.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.92.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.92.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.93.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.93.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.94.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.94.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.95.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.95.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.96.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.96.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.97.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.97.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.98.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.98.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.99.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.99.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.9.fa > Diplomonada---Kipferlia_bialata-KIPB_1.0.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.100.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.100.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.101.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.101.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.102.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.102.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.103.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.103.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.104.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.104.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.105.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.105.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.106.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.106.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.107.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.107.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.108.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.108.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.109.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.109.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.10.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.110.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.110.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.111.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.111.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.112.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.112.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.113.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.113.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.114.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.114.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.115.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.115.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.116.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.116.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.117.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.117.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.118.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.118.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.119.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.119.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.11.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.120.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.120.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.121.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.121.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.122.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.122.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.123.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.123.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.124.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.124.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.125.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.125.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.126.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.126.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.127.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.127.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.128.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.128.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.129.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.129.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.12.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.130.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.130.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.131.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.131.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.132.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.132.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.133.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.133.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.134.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.134.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.135.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.135.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.136.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.136.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.137.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.137.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.138.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.138.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.139.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.139.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.13.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.140.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.140.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.141.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.141.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.142.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.142.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.143.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.143.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.144.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.144.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.145.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.145.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.146.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.146.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.147.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.147.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.148.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.148.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.149.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.149.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.14.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.150.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.150.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.151.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.151.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.152.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.152.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.153.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.153.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.154.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.154.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.155.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.155.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.156.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.156.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.157.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.157.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.158.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.158.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.159.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.159.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.15.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.160.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.160.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.161.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.161.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.162.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.162.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.163.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.163.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.164.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.164.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.165.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.165.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.166.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.166.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.167.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.167.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.168.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.168.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.169.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.169.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.16.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.170.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.170.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.171.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.171.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.172.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.172.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.173.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.173.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.174.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.174.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.175.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.175.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.176.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.176.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.177.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.177.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.178.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.178.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.179.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.179.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.17.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.180.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.180.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.181.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.181.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.182.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.182.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.183.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.183.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.184.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.184.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.185.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.185.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.186.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.186.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.187.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.187.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.188.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.188.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.189.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.189.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.18.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.190.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.190.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.191.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.191.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.192.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.192.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.193.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.193.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.194.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.194.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.195.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.195.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.196.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.196.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.197.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.197.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.198.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.198.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.199.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.199.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.19.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.1.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.200.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.200.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.201.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.201.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.202.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.202.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.203.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.203.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.204.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.204.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.205.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.205.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.206.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.206.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.207.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.207.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.208.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.208.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.209.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.209.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.20.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.210.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.210.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.211.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.211.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.212.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.212.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.213.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.213.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.214.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.214.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.215.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.215.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.216.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.216.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.217.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.217.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.218.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.218.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.219.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.219.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.21.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.220.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.220.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.221.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.221.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.222.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.222.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.223.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.223.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.224.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.224.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.225.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.225.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.226.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.226.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.227.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.227.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.228.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.228.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.229.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.229.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.22.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.230.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.230.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.231.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.231.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.232.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.232.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.233.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.233.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.234.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.234.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.235.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.235.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.236.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.236.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.237.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.237.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.238.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.238.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.239.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.239.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.23.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.240.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.240.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.241.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.241.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.242.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.242.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.243.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.243.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.244.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.244.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.245.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.245.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.246.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.246.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.247.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.247.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.248.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.248.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.249.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.249.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.24.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.250.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.250.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.251.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.251.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.252.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.252.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.253.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.253.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.254.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.254.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.255.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.255.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.256.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.256.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.257.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.257.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.258.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.258.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.259.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.259.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.25.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.260.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.260.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.261.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.261.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.262.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.262.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.263.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.263.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.264.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.264.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.265.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.265.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.266.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.266.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.267.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.267.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.268.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.268.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.269.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.269.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.26.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.270.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.270.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.271.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.271.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.272.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.272.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.273.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.273.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.274.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.274.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.275.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.275.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.276.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.276.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.277.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.277.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.278.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.278.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.279.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.279.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.27.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.280.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.280.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.281.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.281.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.282.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.282.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.283.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.283.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.284.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.284.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.285.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.285.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.286.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.286.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.287.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.287.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.288.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.288.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.289.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.289.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.28.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.290.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.290.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.291.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.291.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.292.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.292.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.293.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.293.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.294.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.294.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.295.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.295.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.296.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.296.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.297.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.297.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.298.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.298.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.299.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.299.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.29.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.2.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.300.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.300.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.301.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.301.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.302.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.302.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.303.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.303.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.304.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.304.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.305.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.305.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.306.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.306.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.307.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.307.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.308.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.308.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.309.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.309.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.30.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.310.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.310.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.311.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.311.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.312.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.312.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.313.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.313.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.314.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.314.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.315.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.315.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.316.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.316.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.317.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.317.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.318.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.318.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.319.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.319.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.31.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.320.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.320.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.321.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.321.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.322.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.322.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.323.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.323.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.324.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.324.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.325.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.325.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.326.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.326.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.327.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.327.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.328.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.328.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.329.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.329.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.32.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.330.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.330.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.331.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.331.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.332.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.332.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.333.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.333.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.334.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.334.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.335.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.335.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.336.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.336.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.337.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.337.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.338.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.338.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.339.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.339.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.33.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.340.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.340.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.341.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.341.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.342.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.342.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.343.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.343.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.344.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.344.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.345.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.345.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.346.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.346.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.347.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.347.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.348.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.348.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.349.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.349.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.34.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.350.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.350.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.351.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.351.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.352.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.352.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.353.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.353.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.354.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.354.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.355.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.355.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.356.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.356.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.357.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.357.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.358.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.358.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.359.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.359.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.35.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.360.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.360.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.361.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.361.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.362.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.362.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.363.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.363.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.364.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.364.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.365.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.365.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.366.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.366.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.367.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.367.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.368.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.368.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.369.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.369.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.36.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.370.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.370.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.371.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.371.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.372.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.372.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.373.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.373.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.374.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.374.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.375.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.375.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.376.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.376.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.377.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.377.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.378.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.378.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.379.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.379.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.37.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.37.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.380.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.380.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.381.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.381.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.382.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.382.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.383.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.383.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.384.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.384.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.385.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.385.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.386.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.386.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.387.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.387.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.388.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.388.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.389.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.389.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.38.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.38.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.390.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.390.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.391.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.391.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.392.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.392.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.393.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.393.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.394.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.394.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.395.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.395.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.39.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.39.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.3.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.40.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.40.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.41.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.41.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.42.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.42.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.43.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.43.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.44.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.44.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.45.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.45.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.46.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.46.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.47.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.47.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.48.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.48.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.49.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.49.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.4.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.50.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.50.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.51.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.51.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.52.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.52.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.53.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.53.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.54.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.54.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.55.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.55.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.56.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.56.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.57.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.57.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.58.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.58.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.59.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.59.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.5.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.60.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.60.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.61.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.61.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.62.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.62.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.63.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.63.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.64.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.64.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.65.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.65.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.66.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.66.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.67.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.67.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.68.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.68.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.69.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.69.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.6.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.70.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.70.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.71.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.71.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.72.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.72.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.73.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.73.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.74.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.74.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.75.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.75.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.76.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.76.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.77.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.77.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.78.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.78.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.79.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.79.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.7.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.80.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.80.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.81.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.81.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.82.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.82.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.83.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.83.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.84.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.84.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.85.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.85.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.86.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.86.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.87.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.87.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.88.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.88.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.89.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.89.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.8.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.90.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.90.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.91.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.91.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.92.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.92.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.93.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.93.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.94.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.94.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.95.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.95.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.96.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.96.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.97.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.97.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.98.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.98.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.99.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.99.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.9.fa > Diplonemida---Diplonema_papillatum-ASM165507v1.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.100.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.100.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.101.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.101.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.102.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.102.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.103.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.103.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.104.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.104.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.105.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.105.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.106.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.106.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.107.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.107.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.108.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.108.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.109.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.109.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.10.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.110.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.110.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.111.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.111.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.112.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.112.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.113.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.113.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.114.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.114.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.115.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.115.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.116.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.116.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.117.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.117.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.118.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.118.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.119.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.119.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.11.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.120.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.120.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.121.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.121.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.122.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.122.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.123.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.123.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.124.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.124.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.125.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.125.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.126.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.126.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.127.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.127.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.128.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.128.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.129.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.129.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.12.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.130.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.130.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.131.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.131.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.132.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.132.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.133.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.133.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.134.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.134.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.135.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.135.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.136.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.136.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.137.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.137.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.138.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.138.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.139.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.139.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.13.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.140.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.140.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.141.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.141.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.142.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.142.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.143.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.143.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.144.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.144.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.145.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.145.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.146.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.146.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.147.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.147.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.148.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.148.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.149.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.149.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.14.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.150.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.150.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.151.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.151.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.152.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.152.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.153.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.153.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.154.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.154.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.155.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.155.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.156.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.156.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.157.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.157.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.158.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.158.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.159.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.159.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.15.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.160.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.160.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.161.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.161.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.162.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.162.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.163.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.163.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.164.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.164.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.165.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.165.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.166.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.166.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.167.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.167.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.168.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.168.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.169.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.169.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.16.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.170.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.170.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.171.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.171.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.172.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.172.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.173.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.173.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.174.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.174.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.175.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.175.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.176.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.176.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.177.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.177.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.178.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.178.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.179.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.179.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.17.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.180.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.180.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.181.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.181.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.182.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.182.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.183.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.183.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.184.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.184.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.185.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.185.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.186.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.186.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.187.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.187.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.188.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.188.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.189.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.189.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.18.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.190.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.190.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.191.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.191.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.192.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.192.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.193.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.193.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.194.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.194.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.195.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.195.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.196.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.196.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.197.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.197.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.198.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.198.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.199.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.199.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.19.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.1.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.200.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.200.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.201.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.201.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.202.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.202.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.203.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.203.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.204.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.204.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.205.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.205.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.206.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.206.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.207.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.207.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.208.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.208.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.209.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.209.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.20.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.210.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.210.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.211.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.211.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.21.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.22.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.23.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.24.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.25.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.26.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.27.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.28.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.29.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.2.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.30.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.31.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.32.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.33.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.34.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.35.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.36.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.37.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.37.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.38.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.38.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.39.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.39.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.3.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.40.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.40.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.41.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.41.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.42.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.42.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.43.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.43.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.44.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.44.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.45.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.45.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.46.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.46.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.47.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.47.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.48.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.48.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.49.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.49.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.4.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.50.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.50.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.51.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.51.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.52.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.52.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.53.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.53.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.54.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.54.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.55.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.55.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.56.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.56.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.57.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.57.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.58.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.58.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.59.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.59.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.5.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.60.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.60.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.61.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.61.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.62.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.62.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.63.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.63.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.64.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.64.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.65.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.65.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.66.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.66.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.67.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.67.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.68.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.68.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.69.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.69.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.6.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.70.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.70.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.71.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.71.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.72.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.72.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.73.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.73.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.74.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.74.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.75.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.75.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.76.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.76.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.77.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.77.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.78.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.78.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.79.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.79.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.7.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.80.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.80.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.81.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.81.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.82.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.82.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.83.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.83.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.84.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.84.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.85.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.85.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.86.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.86.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.87.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.87.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.88.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.88.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.89.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.89.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.8.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.90.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.90.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.91.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.91.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.92.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.92.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.93.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.93.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.94.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.94.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.95.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.95.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.96.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.96.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.97.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.97.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.98.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.98.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.99.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.99.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.9.fa > Euglenida---Euglena_gracilis_var._bacillaris-Euglena_mito_Newbler.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.10.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.11.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.12.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.13.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.14.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.15.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.16.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.17.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.18.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.19.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.1.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.20.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.21.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.22.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.23.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.24.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.25.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.26.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.27.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.28.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.29.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.2.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.30.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.31.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.32.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.33.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.34.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.35.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.36.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.37.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.37.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.38.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.38.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.39.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.39.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.3.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.40.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.40.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.41.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.41.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.42.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.42.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.43.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.43.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.44.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.44.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.45.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.45.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.46.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.46.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.4.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.5.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.6.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.7.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.8.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Bodo_saltans-BSAL.pieces.9.fa > Kinetoplastida---Bodo_saltans-BSAL.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.10.fa > Kinetoplastida---Leishmania_major.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.11.fa > Kinetoplastida---Leishmania_major.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.12.fa > Kinetoplastida---Leishmania_major.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.13.fa > Kinetoplastida---Leishmania_major.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.14.fa > Kinetoplastida---Leishmania_major.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.15.fa > Kinetoplastida---Leishmania_major.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.16.fa > Kinetoplastida---Leishmania_major.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.17.fa > Kinetoplastida---Leishmania_major.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.18.fa > Kinetoplastida---Leishmania_major.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.19.fa > Kinetoplastida---Leishmania_major.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.1.fa > Kinetoplastida---Leishmania_major.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.20.fa > Kinetoplastida---Leishmania_major.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.21.fa > Kinetoplastida---Leishmania_major.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.22.fa > Kinetoplastida---Leishmania_major.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.23.fa > Kinetoplastida---Leishmania_major.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.24.fa > Kinetoplastida---Leishmania_major.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.25.fa > Kinetoplastida---Leishmania_major.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.26.fa > Kinetoplastida---Leishmania_major.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.27.fa > Kinetoplastida---Leishmania_major.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.28.fa > Kinetoplastida---Leishmania_major.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.29.fa > Kinetoplastida---Leishmania_major.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.2.fa > Kinetoplastida---Leishmania_major.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.30.fa > Kinetoplastida---Leishmania_major.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.31.fa > Kinetoplastida---Leishmania_major.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.32.fa > Kinetoplastida---Leishmania_major.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.33.fa > Kinetoplastida---Leishmania_major.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.34.fa > Kinetoplastida---Leishmania_major.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.35.fa > Kinetoplastida---Leishmania_major.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.36.fa > Kinetoplastida---Leishmania_major.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.3.fa > Kinetoplastida---Leishmania_major.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.4.fa > Kinetoplastida---Leishmania_major.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.5.fa > Kinetoplastida---Leishmania_major.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.6.fa > Kinetoplastida---Leishmania_major.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.7.fa > Kinetoplastida---Leishmania_major.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.8.fa > Kinetoplastida---Leishmania_major.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Leishmania_major.pieces.9.fa > Kinetoplastida---Leishmania_major.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Trypanosoma_brucei.pieces.10.fa > Kinetoplastida---Trypanosoma_brucei.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Trypanosoma_brucei.pieces.11.fa > Kinetoplastida---Trypanosoma_brucei.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Trypanosoma_brucei.pieces.1.fa > Kinetoplastida---Trypanosoma_brucei.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Trypanosoma_brucei.pieces.2.fa > Kinetoplastida---Trypanosoma_brucei.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Trypanosoma_brucei.pieces.3.fa > Kinetoplastida---Trypanosoma_brucei.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Trypanosoma_brucei.pieces.4.fa > Kinetoplastida---Trypanosoma_brucei.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Trypanosoma_brucei.pieces.5.fa > Kinetoplastida---Trypanosoma_brucei.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Trypanosoma_brucei.pieces.6.fa > Kinetoplastida---Trypanosoma_brucei.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Trypanosoma_brucei.pieces.7.fa > Kinetoplastida---Trypanosoma_brucei.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Trypanosoma_brucei.pieces.8.fa > Kinetoplastida---Trypanosoma_brucei.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Kinetoplastida---Trypanosoma_brucei.pieces.9.fa > Kinetoplastida---Trypanosoma_brucei.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.10.fa > Metazoa---Ciona_intestinalis.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.11.fa > Metazoa---Ciona_intestinalis.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.12.fa > Metazoa---Ciona_intestinalis.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.13.fa > Metazoa---Ciona_intestinalis.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.14.fa > Metazoa---Ciona_intestinalis.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.15.fa > Metazoa---Ciona_intestinalis.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.16.fa > Metazoa---Ciona_intestinalis.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.17.fa > Metazoa---Ciona_intestinalis.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.18.fa > Metazoa---Ciona_intestinalis.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.19.fa > Metazoa---Ciona_intestinalis.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.1.fa > Metazoa---Ciona_intestinalis.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.20.fa > Metazoa---Ciona_intestinalis.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.21.fa > Metazoa---Ciona_intestinalis.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.22.fa > Metazoa---Ciona_intestinalis.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.23.fa > Metazoa---Ciona_intestinalis.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.24.fa > Metazoa---Ciona_intestinalis.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.25.fa > Metazoa---Ciona_intestinalis.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.26.fa > Metazoa---Ciona_intestinalis.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.27.fa > Metazoa---Ciona_intestinalis.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.28.fa > Metazoa---Ciona_intestinalis.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.29.fa > Metazoa---Ciona_intestinalis.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.2.fa > Metazoa---Ciona_intestinalis.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.30.fa > Metazoa---Ciona_intestinalis.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.31.fa > Metazoa---Ciona_intestinalis.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.32.fa > Metazoa---Ciona_intestinalis.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.33.fa > Metazoa---Ciona_intestinalis.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.34.fa > Metazoa---Ciona_intestinalis.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.35.fa > Metazoa---Ciona_intestinalis.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.36.fa > Metazoa---Ciona_intestinalis.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.37.fa > Metazoa---Ciona_intestinalis.pieces.37.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.38.fa > Metazoa---Ciona_intestinalis.pieces.38.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.39.fa > Metazoa---Ciona_intestinalis.pieces.39.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.3.fa > Metazoa---Ciona_intestinalis.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.40.fa > Metazoa---Ciona_intestinalis.pieces.40.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.41.fa > Metazoa---Ciona_intestinalis.pieces.41.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.42.fa > Metazoa---Ciona_intestinalis.pieces.42.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.43.fa > Metazoa---Ciona_intestinalis.pieces.43.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.44.fa > Metazoa---Ciona_intestinalis.pieces.44.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.45.fa > Metazoa---Ciona_intestinalis.pieces.45.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.46.fa > Metazoa---Ciona_intestinalis.pieces.46.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.47.fa > Metazoa---Ciona_intestinalis.pieces.47.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.48.fa > Metazoa---Ciona_intestinalis.pieces.48.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.49.fa > Metazoa---Ciona_intestinalis.pieces.49.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.4.fa > Metazoa---Ciona_intestinalis.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.50.fa > Metazoa---Ciona_intestinalis.pieces.50.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.51.fa > Metazoa---Ciona_intestinalis.pieces.51.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.52.fa > Metazoa---Ciona_intestinalis.pieces.52.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.53.fa > Metazoa---Ciona_intestinalis.pieces.53.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.54.fa > Metazoa---Ciona_intestinalis.pieces.54.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.55.fa > Metazoa---Ciona_intestinalis.pieces.55.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.56.fa > Metazoa---Ciona_intestinalis.pieces.56.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.57.fa > Metazoa---Ciona_intestinalis.pieces.57.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.58.fa > Metazoa---Ciona_intestinalis.pieces.58.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.59.fa > Metazoa---Ciona_intestinalis.pieces.59.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.5.fa > Metazoa---Ciona_intestinalis.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.60.fa > Metazoa---Ciona_intestinalis.pieces.60.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.61.fa > Metazoa---Ciona_intestinalis.pieces.61.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.62.fa > Metazoa---Ciona_intestinalis.pieces.62.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.63.fa > Metazoa---Ciona_intestinalis.pieces.63.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.64.fa > Metazoa---Ciona_intestinalis.pieces.64.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.6.fa > Metazoa---Ciona_intestinalis.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.7.fa > Metazoa---Ciona_intestinalis.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.8.fa > Metazoa---Ciona_intestinalis.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Ciona_intestinalis.pieces.9.fa > Metazoa---Ciona_intestinalis.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.100.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.100.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.101.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.101.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.102.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.102.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.103.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.103.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.104.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.104.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.105.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.105.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.10.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.11.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.12.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.13.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.14.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.15.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.16.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.17.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.18.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.19.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.1.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.20.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.21.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.22.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.23.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.24.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.25.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.26.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.27.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.28.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.29.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.2.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.30.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.31.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.32.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.33.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.34.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.35.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.36.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.37.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.37.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.38.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.38.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.39.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.39.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.3.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.40.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.40.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.41.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.41.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.42.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.42.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.43.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.43.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.44.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.44.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.45.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.45.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.46.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.46.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.47.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.47.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.48.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.48.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.49.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.49.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.4.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.50.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.50.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.51.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.51.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.52.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.52.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.53.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.53.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.54.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.54.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.55.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.55.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.56.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.56.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.57.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.57.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.58.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.58.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.59.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.59.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.5.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.60.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.60.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.61.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.61.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.62.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.62.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.63.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.63.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.64.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.64.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.65.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.65.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.66.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.66.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.67.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.67.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.68.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.68.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.69.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.69.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.6.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.70.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.70.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.71.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.71.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.72.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.72.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.73.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.73.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.74.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.74.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.75.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.75.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.76.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.76.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.77.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.77.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.78.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.78.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.79.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.79.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.7.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.80.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.80.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.81.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.81.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.82.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.82.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.83.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.83.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.84.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.84.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.85.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.85.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.86.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.86.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.87.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.87.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.88.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.88.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.89.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.89.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.8.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.90.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.90.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.91.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.91.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.92.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.92.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.93.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.93.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.94.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.94.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.95.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.95.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.96.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.96.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.97.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.97.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.98.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.98.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.99.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.99.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Metazoa---Oikopleura_dioica-ASM20955v1.pieces.9.fa > Metazoa---Oikopleura_dioica-ASM20955v1.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.10.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.11.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.12.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.13.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.14.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.15.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.16.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.17.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.18.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.19.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.1.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.20.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.21.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.22.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.23.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.24.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.25.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.26.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.27.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.28.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.29.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.2.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.30.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.31.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.32.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.33.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.34.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.35.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.36.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.37.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.37.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.38.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.38.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.39.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.39.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.3.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.40.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.40.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.41.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.41.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.42.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.42.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.43.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.43.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.44.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.44.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.45.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.45.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.46.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.46.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.47.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.47.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.48.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.48.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.49.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.49.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.4.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.50.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.50.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.51.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.51.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.52.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.52.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.53.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.53.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.54.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.54.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.55.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.55.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.56.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.56.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.57.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.57.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.58.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.58.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.59.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.59.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.5.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.60.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.60.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.61.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.61.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.62.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.62.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.63.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.63.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.64.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.64.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.65.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.65.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.66.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.66.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.67.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.67.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.68.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.68.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.69.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.69.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.6.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.70.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.70.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.7.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.8.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.9.fa > Oxymonads---Monocercomonoides_sp._PA203-Mono14B.pieces.9.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.100.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.100.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.101.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.101.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.102.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.102.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.103.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.103.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.104.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.104.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.105.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.105.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.106.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.106.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.107.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.107.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.108.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.108.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.109.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.109.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.10.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.10.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.110.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.110.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.111.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.111.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.112.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.112.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.113.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.113.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.114.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.114.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.115.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.115.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.116.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.116.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.117.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.117.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.118.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.118.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.119.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.119.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.11.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.11.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.120.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.120.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.121.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.121.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.122.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.122.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.123.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.123.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.124.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.124.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.125.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.125.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.126.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.126.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.127.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.127.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.128.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.128.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.129.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.129.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.12.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.12.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.130.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.130.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.131.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.131.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.132.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.132.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.133.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.133.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.134.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.134.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.135.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.135.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.136.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.136.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.137.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.137.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.138.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.138.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.139.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.139.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.13.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.13.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.140.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.140.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.141.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.141.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.142.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.142.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.143.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.143.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.144.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.144.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.145.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.145.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.146.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.146.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.147.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.147.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.148.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.148.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.149.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.149.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.14.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.14.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.150.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.150.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.151.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.151.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.152.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.152.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.153.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.153.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.154.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.154.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.155.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.155.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.156.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.156.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.157.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.157.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.158.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.158.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.159.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.159.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.15.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.15.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.160.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.160.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.161.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.161.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.162.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.162.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.163.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.163.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.164.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.164.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.165.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.165.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.166.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.166.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.167.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.167.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.168.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.168.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.169.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.169.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.16.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.16.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.170.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.170.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.171.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.171.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.172.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.172.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.173.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.173.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.174.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.174.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.175.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.175.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.176.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.176.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.177.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.177.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.178.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.178.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.179.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.179.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.17.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.17.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.18.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.18.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.19.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.19.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.1.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.1.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.20.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.20.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.21.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.21.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.22.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.22.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.23.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.23.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.24.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.24.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.25.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.25.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.26.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.26.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.27.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.27.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.28.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.28.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.29.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.29.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.2.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.2.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.30.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.30.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.31.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.31.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.32.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.32.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.33.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.33.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.34.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.34.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.35.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.35.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.36.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.36.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.37.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.37.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.38.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.38.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.39.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.39.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.3.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.3.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.40.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.40.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.41.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.41.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.42.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.42.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.43.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.43.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.44.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.44.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.45.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.45.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.46.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.46.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.47.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.47.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.48.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.48.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.49.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.49.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.4.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.4.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.50.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.50.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.51.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.51.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.52.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.52.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.53.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.53.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.54.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.54.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.55.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.55.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.56.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.56.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.57.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.57.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.58.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.58.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.59.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.59.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.5.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.5.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.60.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.60.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.61.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.61.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.62.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.62.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.63.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.63.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.64.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.64.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.65.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.65.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.66.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.66.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.67.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.67.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.68.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.68.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.69.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.69.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.6.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.6.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.70.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.70.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.71.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.71.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.72.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.72.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.73.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.73.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.74.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.74.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.75.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.75.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.76.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.76.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.77.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.77.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.78.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.78.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.79.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.79.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.7.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.7.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.80.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.80.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.81.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.81.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.82.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.82.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.83.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.83.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.84.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.84.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.85.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.85.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.86.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.86.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.87.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.87.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.88.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.88.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.89.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.89.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.8.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.8.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.90.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.90.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.91.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.91.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.92.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.92.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.93.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.93.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.94.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.94.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.95.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.95.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.96.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.96.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.97.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.97.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.98.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.98.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.99.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.99.RFAM14-cmscan
~/programs/infernal-1.1.1-linux-intel-gcc/binaries/cmscan /oak/stanford/groups/akundaje/marinovg/genomes/Rfam/Rfam14.0/Rfam_with_desc.cm Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.9.fa > Perkinsida---Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0.pieces.9.RFAM14-cmscan