cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Aptenodytes_forsteri-ASM69914v1/GCA_000699145.1_ASM69914v1_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Aptenodytes_forsteri-ASM69914v1/GCA_000699145.1_ASM69914v1_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Aptenodytes_forsteri-ASM69914v1/GCA_000699145.1_ASM69914v1_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Calypte_anna-ASM69908v1/GCA_000699085.1_ASM69908v1_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Calypte_anna-ASM69908v1/GCA_000699085.1_ASM69908v1_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Calypte_anna-ASM69908v1/GCA_000699085.1_ASM69908v1_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Chaetura_pelagica-ChaPel_1.0/GCA_000747805.1_ChaPel_1.0_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Chaetura_pelagica-ChaPel_1.0/GCA_000747805.1_ChaPel_1.0_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Chaetura_pelagica-ChaPel_1.0/GCA_000747805.1_ChaPel_1.0_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Charadrius_vociferus-ASM70802v2/GCA_000708025.2_ASM70802v2_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Charadrius_vociferus-ASM70802v2/GCA_000708025.2_ASM70802v2_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Charadrius_vociferus-ASM70802v2/GCA_000708025.2_ASM70802v2_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Columba_livia-Cliv_1.0/GCA_000337935.1_Cliv_1.0_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Columba_livia-Cliv_1.0/GCA_000337935.1_Cliv_1.0_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Columba_livia-Cliv_1.0/GCA_000337935.1_Cliv_1.0_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Corvus_brachyrhynchos-ASM69197v1/GCA_000691975.1_ASM69197v1_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Corvus_brachyrhynchos-ASM69197v1/GCA_000691975.1_ASM69197v1_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Corvus_brachyrhynchos-ASM69197v1/GCA_000691975.1_ASM69197v1_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Cuculus_canorus-ASM70932v1/GCA_000709325.1_ASM70932v1_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Cuculus_canorus-ASM70932v1/GCA_000709325.1_ASM70932v1_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Cuculus_canorus-ASM70932v1/GCA_000709325.1_ASM70932v1_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Egretta_garzetta-ASM68718v1/GCA_000687185.1_ASM68718v1_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Egretta_garzetta-ASM68718v1/GCA_000687185.1_ASM68718v1_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Egretta_garzetta-ASM68718v1/GCA_000687185.1_ASM68718v1_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Manacus_vitellinus-ASM69201v2/GCA_000692015.2_ASM69201v2_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Manacus_vitellinus-ASM69201v2/GCA_000692015.2_ASM69201v2_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Manacus_vitellinus-ASM69201v2/GCA_000692015.2_ASM69201v2_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Nipponia_nippon-ASM70822v1/GCA_000708225.1_ASM70822v1_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Nipponia_nippon-ASM70822v1/GCA_000708225.1_ASM70822v1_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Nipponia_nippon-ASM70822v1/GCA_000708225.1_ASM70822v1_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Oikopleura_dioica-ASM20953v1/GCA_000209535.1_ASM20953v1_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Oikopleura_dioica-ASM20953v1/GCA_000209535.1_ASM20953v1_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Oikopleura_dioica-ASM20953v1/GCA_000209535.1_ASM20953v1_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Oikopleura_dioica-ASM20955v1/GCA_000209555.1_ASM20955v1_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Oikopleura_dioica-ASM20955v1/GCA_000209555.1_ASM20955v1_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Oikopleura_dioica-ASM20955v1/GCA_000209555.1_ASM20955v1_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Picoides_pubescens-ASM69900v1/GCA_000699005.1_ASM69900v1_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Picoides_pubescens-ASM69900v1/GCA_000699005.1_ASM69900v1_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Picoides_pubescens-ASM69900v1/GCA_000699005.1_ASM69900v1_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Pygoscelis_adeliae-ASM69910v1/GCA_000699105.1_ASM69910v1_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Pygoscelis_adeliae-ASM69910v1/GCA_000699105.1_ASM69910v1_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Pygoscelis_adeliae-ASM69910v1/GCA_000699105.1_ASM69910v1_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Struthio_camelus-ASM69896v1/GCA_000698965.1_ASM69896v1_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Struthio_camelus-ASM69896v1/GCA_000698965.1_ASM69896v1_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Struthio_camelus-ASM69896v1/GCA_000698965.1_ASM69896v1_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Tinamus_guttatus-ASM70537v2/GCA_000705375.2_ASM70537v2_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Tinamus_guttatus-ASM70537v2/GCA_000705375.2_ASM70537v2_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Tinamus_guttatus-ASM70537v2/GCA_000705375.2_ASM70537v2_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Myxozoa/Thelohanellus_kitauei-ASM82789v1/GCA_000827895.1_ASM82789v1_protein.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Myxozoa/Thelohanellus_kitauei-ASM82789v1/GCA_000827895.1_ASM82789v1_protein.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Myxozoa/Thelohanellus_kitauei-ASM82789v1/GCA_000827895.1_ASM82789v1_protein.faa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Annelida/Capitella_teleta/Capitella_teleta.GCA_000328365.1.20.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Annelida/Capitella_teleta/Capitella_teleta.GCA_000328365.1.20.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Annelida/Capitella_teleta/Capitella_teleta.GCA_000328365.1.20.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chelicerata/Ixodes_scapularis/Ixodes_scapularis.IscaW1.20.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chelicerata/Ixodes_scapularis/Ixodes_scapularis.IscaW1.20.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chelicerata/Ixodes_scapularis/Ixodes_scapularis.IscaW1.20.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Ciona_intestinalis/Ciona_intestinalis.KH.73.fixed.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Ciona_intestinalis/Ciona_intestinalis.KH.73.fixed.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Ciona_intestinalis/Ciona_intestinalis.KH.73.fixed.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Gadus_morhua.gadMor1/Gadus_morhua.gadMor1.79.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Gadus_morhua.gadMor1/Gadus_morhua.gadMor1.79.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Gadus_morhua.gadMor1/Gadus_morhua.gadMor1.79.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Gallus_gallus.WASHUC2/Gallus_gallus.WASHUC2.64.fixed.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Gallus_gallus.WASHUC2/Gallus_gallus.WASHUC2.64.fixed.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Gallus_gallus.WASHUC2/Gallus_gallus.WASHUC2.64.fixed.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Gasterosteus_aculeatus-ENSEMBL79/Gasterosteus_aculeatus.BROADS1.79.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Gasterosteus_aculeatus-ENSEMBL79/Gasterosteus_aculeatus.BROADS1.79.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Gasterosteus_aculeatus-ENSEMBL79/Gasterosteus_aculeatus.BROADS1.79.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Latimeria_chalumnae.LatCha1/Latimeria_chalumnae.LatCha1.79.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Latimeria_chalumnae.LatCha1/Latimeria_chalumnae.LatCha1.79.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Latimeria_chalumnae.LatCha1/Latimeria_chalumnae.LatCha1.79.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Lepisosteus_oculatus.LepOcu1/Lepisosteus_oculatus.LepOcu1.79.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Lepisosteus_oculatus.LepOcu1/Lepisosteus_oculatus.LepOcu1.79.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Lepisosteus_oculatus.LepOcu1/Lepisosteus_oculatus.LepOcu1.79.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Oikopleura_dioica-ASM20955v1/GCA_000209555.1_ASM20955v1_genomic.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Oikopleura_dioica-ASM20955v1/GCA_000209555.1_ASM20955v1_genomic.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Oikopleura_dioica-ASM20955v1/GCA_000209555.1_ASM20955v1_genomic.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Oryzias_latipes/Oryzias_latipes.MEDAKA1.73.fixed.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Oryzias_latipes/Oryzias_latipes.MEDAKA1.73.fixed.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Oryzias_latipes/Oryzias_latipes.MEDAKA1.73.fixed.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.73.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.73.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/Petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.73.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/tetNig2/tetNig2-ENSEMBL-2013-04-29.withNames.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/tetNig2/tetNig2-ENSEMBL-2013-04-29.withNames.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Chordates/tetNig2/tetNig2-ENSEMBL-2013-04-29.withNames.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Cnidaria/Nematostella_vectensis/Nematostella_vectensis.ASM20922v1.20.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Cnidaria/Nematostella_vectensis/Nematostella_vectensis.ASM20922v1.20.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Cnidaria/Nematostella_vectensis/Nematostella_vectensis.ASM20922v1.20.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Crustacea/Daphnia_pulex/Daphnia_pulex.Dappu1.20.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Crustacea/Daphnia_pulex/Daphnia_pulex.Dappu1.20.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Crustacea/Daphnia_pulex/Daphnia_pulex.Dappu1.20.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus/Strongylocentrotus_purpuratus.GCA_000002235.2.20.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus/Strongylocentrotus_purpuratus.GCA_000002235.2.20.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Echinodermata/Strongylocentrotus_purpuratus/Strongylocentrotus_purpuratus.GCA_000002235.2.20.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Aedes_aegypti/Aedes_aegypti.AaegL1.20.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Aedes_aegypti/Aedes_aegypti.AaegL1.20.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Aedes_aegypti/Aedes_aegypti.AaegL1.20.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Anopheles_gambiae/Anopheles_gambiae.AgamP3.20.fixed.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Anopheles_gambiae/Anopheles_gambiae.AgamP3.20.fixed.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Anopheles_gambiae/Anopheles_gambiae.AgamP3.20.fixed.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Apis_mellifera/Apis_mellifera.Amel4.0.20.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Apis_mellifera/Apis_mellifera.Amel4.0.20.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Apis_mellifera/Apis_mellifera.Amel4.0.20.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Heliconius_melpomene/Heliconius_melpomene.Hmel1.20.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Heliconius_melpomene/Heliconius_melpomene.Hmel1.20.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Heliconius_melpomene/Heliconius_melpomene.Hmel1.20.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Pediculus_humanus/Pediculus_humanus.PhumU1.20.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Pediculus_humanus/Pediculus_humanus.PhumU1.20.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Pediculus_humanus/Pediculus_humanus.PhumU1.20.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Tribolium_castaneum/Tribolium_castaneum.Tcas3.20.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Tribolium_castaneum/Tribolium_castaneum.Tcas3.20.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Insects/Tribolium_castaneum/Tribolium_castaneum.Tcas3.20.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Mollusca/Crassostrea_gigas/Crassostrea_gigas.GCA_000297895.1.20.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Mollusca/Crassostrea_gigas/Crassostrea_gigas.GCA_000297895.1.20.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Mollusca/Crassostrea_gigas/Crassostrea_gigas.GCA_000297895.1.20.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Myriapoda/Strigamia_maritima/Strigamia_maritima.Smar1.20.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Myriapoda/Strigamia_maritima/Strigamia_maritima.Smar1.20.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Myriapoda/Strigamia_maritima/Strigamia_maritima.Smar1.20.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Placozoa/Trichoplax_adhaerens/Trichoplax_adhaerens.ASM15027v1.20.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Placozoa/Trichoplax_adhaerens/Trichoplax_adhaerens.ASM15027v1.20.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Placozoa/Trichoplax_adhaerens/Trichoplax_adhaerens.ASM15027v1.20.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Plathelminthes/Schistosoma_mansoni/Schistosoma_mansoni.ASM23792v1.20.fixed.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Plathelminthes/Schistosoma_mansoni/Schistosoma_mansoni.ASM23792v1.20.fixed.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Plathelminthes/Schistosoma_mansoni/Schistosoma_mansoni.ASM23792v1.20.fixed.ORF.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-08-25-PRC; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Metazoa/Porifera/Amphimedon_queenslandica/Amphimedon_queenslandica.Aqu1.20.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Metazoa/Porifera/Amphimedon_queenslandica/Amphimedon_queenslandica.Aqu1.20.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Metazoa/Porifera/Amphimedon_queenslandica/Amphimedon_queenslandica.Aqu1.20.ORF.fa