# hmmscan :: search sequence(s) against a profile database
# HMMER 3.0 (March 2010); http://hmmer.org/
# Copyright (C) 2010 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             ORC3.fasta
# target HMM database:             /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm
# output directed to file:         ORC3.PFam-27-A
# per-seq hits tabular output:     Spt16-hmmscan.tblout
# number of worker threads:        16
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       gi|4337056|gb|AAD18057.1|  [L=711]
Description: origin recognition complex subunit 3 [Homo sapiens]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-136  453.6   7.7   5.4e-136  452.8   5.4    1.4  1  ORC3_N    Origin recognition complex (ORC) subunit 3 N-termi


Domain annotation for each model (and alignments):
>> ORC3_N  Origin recognition complex (ORC) subunit 3 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  452.8   5.4  3.7e-140  5.4e-136       3     330 .]      17     344 ..      14     344 .. 0.99

  Alignments for each domain:
  == domain 1    score: 452.8 bits;  conditional E-value: 3.7e-140
                     ORC3_N   3 aakrkksksledafeeeseddeelaselrfeayeklWekikseieelqdelnakildqllefvressasrqeeareteskvkar 86 
                                ++krk s  +ed+f++++++ e+  s+lrfe+y+ +W+++kse e+lq+eln++++d+l+ef+++s++ +q+++r+   ++k r
  gi|4337056|gb|AAD18057.1|  17 SKKRKISLPIEDYFNKGKNEPED--SKLRFETYQLIWQQMKSENERLQEELNKNLFDNLIEFLQKSHSGFQKNSRDLGGQIKLR 98 
                                57899******************..*********************************************************** PP

                     ORC3_N  87 eiptaalltgvnvtDheltFesLtesLkksvtahVvlLqskdlsalkaalekllrqlveeksdveeeeeeee.ialrkvqltis 169
                                eiptaal++gvnvtDh+ltF sLte L+++vt++Vv+Lq+kd++++k++l+kl++ql+++++d++++eee+  +++rk++++++
  gi|4337056|gb|AAD18057.1|  99 EIPTAALVLGVNVTDHDLTFGSLTEALQNNVTPYVVSLQAKDCPDMKHFLQKLISQLMDCCVDIKSKEEESVhVTQRKTHYSMD 182
                                *****************************************************************9999988899********* PP

                     ORC3_N 170 alaswYkasgeksdska.kkknaesseaesppvvvileDlEsfsgkVLqdfililseyvselPlvlvlGiATsvsaiqklLpas 252
                                +l+swY+++++k+d k+ +kk+++ss+++sppvvvil+D+Esf +kVLqdfi+i+s++++e+Pl+l++GiATs+ +i++lLp++
  gi|4337056|gb|AAD18057.1| 183 SLSSWYMTVTQKTDPKMlSKKRTTSSQWQSPPVVVILKDMESFATKVLQDFIIISSQHLHEFPLILIFGIATSPIIIHRLLPHA 266
                                ************************************************************************************ PP

                     ORC3_N 253 vssllklelfqslspsqrLeavldkvlLtpefpfklsskvlkvLtsiFlyhDfsvqnfikglklalleHFlteplsvl 330
                                vssll++elfqsls++++L++vldk+lLt++fpfk+++kvl+vLt+iFlyhDfsvqnfikgl+l+lleHF+++plsvl
  gi|4337056|gb|AAD18057.1| 267 VSSLLCIELFQSLSCKEHLTTVLDKLLLTTQFPFKINEKVLQVLTNIFLYHDFSVQNFIKGLQLSLLEHFYSQPLSVL 344
                                ****************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues)
Target model(s):                       14831  (2610332 nodes)
Passed MSV filter:                       859  (0.0579192); expected 296.6 (0.02)
Passed bias filter:                      306  (0.0206325); expected 296.6 (0.02)
Passed Vit filter:                        27  (0.00182051); expected 14.8 (0.001)
Passed Fwd filter:                         2  (0.000134853); expected 0.1 (1e-05)
Initial search space (Z):              14831  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.49s 00:00:00.97 Elapsed: 00:00:03.42
# Mc/sec: 542.67
//