cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout AAA_21-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout AAA_21-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout AAA_21-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout AAA_21-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout AAA_21-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Ammonia-sp.-Unknown.pep --tblout AAA_21-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout AAA_21-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout AAA_21-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Amphiprora-sp.pep --tblout AAA_21-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout AAA_21-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout AAA_21-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout AAA_21-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout AAA_21-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout AAA_21-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout AAA_21-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout AAA_21-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout AAA_21-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout AAA_21-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout AAA_21-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout AAA_21-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Azadinium-spinosum-3D9.pep --tblout AAA_21-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout AAA_21-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout AAA_21-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Bicosoecid-sp-ms1.pep --tblout AAA_21-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout AAA_21-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout AAA_21-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout AAA_21-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout AAA_21-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout AAA_21-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout AAA_21-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout AAA_21-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout AAA_21-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout AAA_21-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout AAA_21-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Ceratium-fusus-PA161109.pep --tblout AAA_21-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout AAA_21-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chaetoceros-curvisetus.pep --tblout AAA_21-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout AAA_21-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout AAA_21-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout AAA_21-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout AAA_21-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout AAA_21-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chromera-velia-CCMP2878.pep --tblout AAA_21-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout AAA_21-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout AAA_21-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout AAA_21-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout AAA_21-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout AAA_21-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout AAA_21-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout AAA_21-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout AAA_21-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout AAA_21-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout AAA_21-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout AAA_21-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout AAA_21-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Condylostoma-magnum-COL2.pep --tblout AAA_21-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Corethron-pennatum-L29A3.pep --tblout AAA_21-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout AAA_21-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout AAA_21-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout AAA_21-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout AAA_21-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout AAA_21-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout AAA_21-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout AAA_21-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout AAA_21-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout AAA_21-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout AAA_21-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout AAA_21-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Debaryomyces-hansenii-J26.pep --tblout AAA_21-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout AAA_21-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout AAA_21-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout AAA_21-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout AAA_21-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout AAA_21-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout AAA_21-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout AAA_21-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout AAA_21-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout AAA_21-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout AAA_21-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout AAA_21-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Emiliania-huxleyi-374.pep --tblout AAA_21-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Emiliania-huxleyi-379.pep --tblout AAA_21-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout AAA_21-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout AAA_21-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout AAA_21-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout AAA_21-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout AAA_21-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout AAA_21-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Euplotes-focardii-TN1.pep --tblout AAA_21-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout AAA_21-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout AAA_21-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout AAA_21-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout AAA_21-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout AAA_21-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout AAA_21-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout AAA_21-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout AAA_21-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout AAA_21-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Florenciella-parvula-RCC1693.pep --tblout AAA_21-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Florenciella-sp.-RCC1007.pep --tblout AAA_21-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout AAA_21-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout AAA_21-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout AAA_21-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout AAA_21-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout AAA_21-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout AAA_21-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout AAA_21-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout AAA_21-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout AAA_21-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout AAA_21-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout AAA_21-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout AAA_21-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout AAA_21-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout AAA_21-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout AAA_21-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Hanusia-phi-CCMP325.pep --tblout AAA_21-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout AAA_21-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout AAA_21-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout AAA_21-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout AAA_21-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout AAA_21-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout AAA_21-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout AAA_21-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout AAA_21-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout AAA_21-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout AAA_21-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Heterosigma-akashiwo-NB.pep --tblout AAA_21-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Imantonia-sp.-RCC918.pep --tblout AAA_21-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout AAA_21-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout AAA_21-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout AAA_21-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Karenia-brevis-CCMP2229.pep --tblout AAA_21-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Karenia-brevis-SP1.pep --tblout AAA_21-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Karenia-brevis-SP3.pep --tblout AAA_21-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Karenia-brevis-Wilson.pep --tblout AAA_21-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout AAA_21-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout AAA_21-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout AAA_21-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout AAA_21-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout AAA_21-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout AAA_21-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout AAA_21-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout AAA_21-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Litonotus-pictus-P1.pep --tblout AAA_21-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout AAA_21-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Lotharella-globosa-CCCM811.pep --tblout AAA_21-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout AAA_21-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout AAA_21-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout AAA_21-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout AAA_21-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout AAA_21-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout AAA_21-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout AAA_21-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Micromonas-sp-CCMP2099.pep --tblout AAA_21-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Micromonas-sp-NEPCC29.pep --tblout AAA_21-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Micromonas-sp-RCC472.pep --tblout AAA_21-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Minchinia-chitonis-Unknown.pep --tblout AAA_21-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout AAA_21-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout AAA_21-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout AAA_21-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout AAA_21-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout AAA_21-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout AAA_21-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout AAA_21-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout AAA_21-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout AAA_21-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout AAA_21-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout AAA_21-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout AAA_21-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout AAA_21-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout AAA_21-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout AAA_21-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Oxyrrhis-marina.pep --tblout AAA_21-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout AAA_21-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout AAA_21-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout AAA_21-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout AAA_21-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout AAA_21-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pavlova-sp-CCMP459.pep --tblout AAA_21-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout AAA_21-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout AAA_21-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout AAA_21-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout AAA_21-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout AAA_21-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout AAA_21-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout AAA_21-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout AAA_21-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pessonella-sp.-PRA-29.pep --tblout AAA_21-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout AAA_21-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout AAA_21-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout AAA_21-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout AAA_21-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Picochlorum-sp.-RCC944.pep --tblout AAA_21-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout AAA_21-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout AAA_21-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Platyophrya-macrostoma-WH.pep --tblout AAA_21-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout AAA_21-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout AAA_21-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout AAA_21-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout AAA_21-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout AAA_21-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout AAA_21-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Proboscia-alata-PI_D3.pep --tblout AAA_21-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout AAA_21-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout AAA_21-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout AAA_21-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout AAA_21-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Protocruzia-adherens-Boccale.pep --tblout AAA_21-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout AAA_21-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout AAA_21-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout AAA_21-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout AAA_21-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout AAA_21-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pteridomonas-danica-PT.pep --tblout AAA_21-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout AAA_21-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout AAA_21-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout AAA_21-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout AAA_21-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout AAA_21-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout AAA_21-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout AAA_21-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout AAA_21-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Rhodella-maculata-CCMP736.pep --tblout AAA_21-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Rhodomonas-lens-RHODO.pep --tblout AAA_21-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout AAA_21-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout AAA_21-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Rosalina-sp.-Unknown.pep --tblout AAA_21-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout AAA_21-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout AAA_21-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout AAA_21-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout AAA_21-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout AAA_21-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout AAA_21-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout AAA_21-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout AAA_21-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout AAA_21-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout AAA_21-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Sorites-sp.-Unknown.pep --tblout AAA_21-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout AAA_21-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout AAA_21-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout AAA_21-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout AAA_21-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout AAA_21-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Stichococcus-sp-RCC1054.pep --tblout AAA_21-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout AAA_21-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout AAA_21-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout AAA_21-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Strombidium-inclinatum-S3.pep --tblout AAA_21-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout AAA_21-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout AAA_21-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout AAA_21-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Symbiodinium-sp-C1.pep --tblout AAA_21-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Symbiodinium-sp-C15.pep --tblout AAA_21-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout AAA_21-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Symbiodinium-sp-Mp.pep --tblout AAA_21-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout AAA_21-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout AAA_21-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout AAA_21-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout AAA_21-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout AAA_21-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout AAA_21-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout AAA_21-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout AAA_21-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout AAA_21-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout AAA_21-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout AAA_21-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout AAA_21-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout AAA_21-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout AAA_21-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout AAA_21-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout AAA_21-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout AAA_21-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Tiarina-fusus-LIS.pep --tblout AAA_21-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout AAA_21-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Togula-jolla-CCCM-725.pep --tblout AAA_21-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Triceratium-dubium-CCMP147.pep --tblout AAA_21-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout AAA_21-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Undescribed-sp-CCMP2097.pep --tblout AAA_21-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Undescribed-sp-CCMP2098.pep --tblout AAA_21-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Undescribed-sp-CCMP2293.pep --tblout AAA_21-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Undescribed-sp-CCMP2436.pep --tblout AAA_21-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Undescribed-sp-D1.pep --tblout AAA_21-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout AAA_21-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout AAA_21-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Uronema-sp.-Bbcil.pep --tblout AAA_21-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout AAA_21-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout AAA_21-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout AAA_21-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout AAA_21-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-06-condensin; module load hmmer/3.0; hmmscan --cpu 16 -o AAA_21-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout AAA_21-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.AAA_21.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa