# hmmscan :: search sequence(s) against a profile database # HMMER 3.0 (March 2010); http://hmmer.org/ # Copyright (C) 2010 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: Glaucophyte.Dicer.fa # target HMM database: /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm # output directed to file: Glaucophyte.Dicer.PFam-27-A # number of worker threads: 16 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999966 [L=419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-42 144.8 0.2 2.2e-42 144.4 0.1 1.2 1 DEAD DEAD/DEAH box helicase 5.7e-25 86.9 0.1 1.1e-24 86.0 0.1 1.5 1 Helicase_C Helicase conserved C-terminal domain 0.0032 17.3 0.0 0.013 15.3 0.0 1.8 1 ResIII Type III restriction enzyme, res subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 144.4 0.1 4.5e-46 2.2e-42 2 168 .. 70 234 .. 69 235 .. 0.94 Alignments for each domain: == domain 1 score: 144.4 bits; conditional E-value: 4.5e-46 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT.EEEEEESSHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.xxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq.kalivaPtreLae 58 piQ+e+ip +l g+d+l++a+ G+GKT+af+ip++++ +t + q ++li++PtreLa Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999966 70 PIQEESIPFALAGKDILARAKNGTGKTAAFIIPALEKTDTTkN-QvQVLILVPTRELAL 127 8*************************************99955.55************* PP HHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHC CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 59 qtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnl 117 qt + +k+++k+++++v++ +gg++l+ d+ +l +v+++v+Tpgr++dl ++g nl Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999966 128 QTSQVCKEIGKHMHVEVMVSTGGTSLK-DDIMRLYSTVHVLVATPGRVLDLANKGVANL 185 *************************99.777788667****************9988** PP TTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 118 sqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 s++ ++V+DEad+lls +f++ ++q++q l ++++q+++ SAT+p +vk+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999966 186 SHCHVMVMDEADKLLSPEFQPLVEQLIQFL--PSDRQILLYSATFPVTVKN 234 *****************************9..777***********88876 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.0 0.1 2.3e-28 1.1e-24 3 78 .] 302 377 .. 300 377 .. 0.97 Alignments for each domain: == domain 1 score: 86.0 bits; conditional E-value: 2.3e-28 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlp 61 ++ g++++++h+++ q+ r++++++f++g ++ lv+++ + rGid+++vnvVinfd+p Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999966 302 ITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVSSDLFTRGIDIQAVNVVINFDFP 360 6789******************************************************* PP SSHHHHHHHHTTSSTTT CS Helicase_C 62 rsvtsyiQriGRtgRag 78 ++ ++y++riGR gR+g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999966 361 KNSETYLHRIGRSGRFG 377 ***************87 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 0.0 2.6e-06 0.013 28 182 .. 85 228 .. 80 230 .. 0.62 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 2.6e-06 EEEEESTTSTHHHHHHHHHHHH-S........-EEEEESSHHHHHHHHHHGGGGTGG.. CS ResIII 28 glivmaTGtGKTlvaasliarlar........kflflvprkelleqaleefkkfeskki 78 +l + GtGKT + +++ + ++l+lvp++el q+ + k++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999966 85 ILARAKNGTGKTAAFIIPALE--KtdttknqvQVLILVPTRELALQTSQVCKEIGKH-- 139 6677788*****999843333..33468899****************9777222222.. PP .GEEEESSS-B---SEEEEEHHHHH.................................. CS ResIII 79 efekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendesks 137 + + + + ++kd ++ ++ ++++t ++ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999966 140 ---------MHVEVMVSTGGTSLKDDIMRLYSTVHVLVATPGRVLDLANK--------- 180 .........22222222233444455555555555555555555544333......... PP HTHHHHTTT-SEEEEETGGGTTSTT.THHHHH......---SEEEEEESS- CS ResIII 138 eslealldefdviiiDEaHrlsakkkyreile......fkkafllglTATp 182 a+l + v+++DEa +l +++ ++ ++e ++ +l +AT+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999966 181 --GVANLSHCHVMVMDEADKLLSPE-FQPLVEqliqflPSDRQILLYSATF 228 ..23444566699999998888888.6666555666776777778888886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (419 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 529 (0.0356685); expected 296.6 (0.02) Passed bias filter: 424 (0.0285888); expected 296.6 (0.02) Passed Vit filter: 30 (0.00202279); expected 14.8 (0.001) Passed Fwd filter: 3 (0.000202279); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.24u 0.43s 00:00:00.67 Elapsed: 00:00:02.16 # Mc/sec: 506.36 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008046 [L=474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-24 85.6 0.1 3.7e-24 84.4 0.1 1.7 1 Helicase_C Helicase conserved C-terminal domain 8.3e-22 77.4 0.0 2e-15 56.6 0.0 3.0 3 DEAD DEAD/DEAH box helicase 0.0012 17.3 0.0 0.2 10.0 0.0 3.0 2 DUF1253 Protein of unknown function (DUF1253) Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.4 0.1 7.4e-28 3.7e-24 2 78 .] 342 418 .. 341 423 .. 0.98 Alignments for each domain: == domain 1 score: 84.4 bits; conditional E-value: 7.4e-28 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSS CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl 60 ll++++++va lh++ +q r ++++ f++g +vlvat+va+rGid+ dv++V+ +d+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008046 342 LLKAEQFHVAGLHSDKSQPYRFRVMKAFKQGGVDVLVATDVASRGIDVSDVTHVVLYDM 400 789999***************************************************** PP SSSHHHHHHHHTTSSTTT CS Helicase_C 61 prsvtsyiQriGRtgRag 78 p++ ++y++riGRtgRag Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008046 401 PDTIEDYVHRIGRTGRAG 418 ****************97 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 0.0 1.6e-06 0.0079 47 76 .. 7 38 .. 5 63 .. 0.73 2 ! 56.6 0.0 4e-19 2e-15 71 168 .. 171 274 .. 158 275 .. 0.82 3 ? 1.0 0.0 0.051 2.5e+02 60 102 .. 335 380 .. 332 397 .. 0.83 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 1.6e-06 EEEEESSHHHHHHHHHHHHHHTTT..SSCCEE CS xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx RF DEAD 47 alivaPtreLaeqtlnnlkqfkky..pklrvl 76 ali+ P+reL+eq+++++++f++ + ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008046 7 ALIIGPSRELVEQIYSEVSKFIEAlkERSSAS 38 89********************9953333333 PP == domain 2 score: 56.6 bits; conditional E-value: 4e-19 SSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHC.....TTEEE.. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxx.. RF DEAD 71 pklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnl.....sqvrl.. 122 ++++vl ++ggv+l ++ + +++gvd++v+Tpgrl+dl+++g l+l + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008046 171 HQIKVLGVVGGVPLGTQVQPLVQKGVDVLVATPGRLLDLFERGALSLegkliVT--Vlg 227 6789999******996666666999*****************777664443322..244 PP ..EEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 123 ..lVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 lV+DEadr+l+ g++ ql++++ + +++ +q++++SATlp+ +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008046 228 vnLVMDEADRMLDLGMELQLRKVVGLASKY-ARQTLLFSATLPTALER 274 489***********************8777.789*********88776 PP == domain 3 score: 1.0 bits; conditional E-value: 0.051 HHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 60 tlnnlkqfkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 +++++ q++k ++ v+ +++++++ + +v+ ++gvd++v+T Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008046 335 IVDKVVQLLKAEQFHVAGLHSDKSQP-YRFRVMkafkQGGVDVLVAT 380 78889999999999999999999955.5555666789999*****99 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.1 0.0 0.048 2.3e+02 39 112 .. 6 77 .. 4 79 .. 0.78 2 ! 10.0 0.0 4e-05 0.2 294 387 .. 317 408 .. 246 425 .. 0.83 Alignments for each domain: == domain 1 score: -0.1 bits; conditional E-value: 0.048 DUF1253 39 kvLillpfrniakevvdlliklleaekqvenkkrFeeefdlteeekkeeeekalkkkkp 97 Li+ p r+ ++ + + k++ea k+ + + F+++ +++ +++ ++++ +++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008046 6 VALIIGPSRELVEQIYSEVSKFIEALKERSSASLFSSSV--PNHYSSALQSHSSSQSHS 62 568999999999999999999999988888888888876..677777777777788888 PP DUF1253 98 edyralFkGnndDeF 112 +++ al n+++ F Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008046 63 NSFAALSDMNSQQYF 77 888888888877777 PP == domain 2 score: 10.0 bits; conditional E-value: 4e-05 DUF1253 294 ltkeskekgvlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkgrkk 352 l + +++ vlif ++ ++lk+e++ a+++ s+ r k+Fk+g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008046 317 LLRGTERPPVLIFCNMTHIVDKVVQLLKAEQFHVAGLHSDKSQPYRFRVMKAFKQGGVD 375 34366677788888877777799999***********9999999999************ PP DUF1253 353 iLLvteRlhfyrRykikgvkkvifyslPefpefYs 387 +L+ t+ + r + + +v++v++y +P+ e Y Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008046 376 VLVATDVAS--RGIDVSDVTHVVLYDMPDTIEDYV 408 *****9775..899**************9877665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (474 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 639 (0.0430854); expected 296.6 (0.02) Passed bias filter: 494 (0.0333086); expected 296.6 (0.02) Passed Vit filter: 58 (0.00391073); expected 14.8 (0.001) Passed Fwd filter: 11 (0.00074169); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.33u 0.52s 00:00:00.85 Elapsed: 00:00:02.75 # Mc/sec: 449.93 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193998622 [L=712] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-19 68.1 0.0 1.1e-11 44.7 0.0 2.4 2 Ribonucleas_3_3 Ribonuclease-III-like 1.5e-14 54.4 0.2 4.7e-06 27.0 0.0 3.5 2 Ribonuclease_3 Ribonuclease III domain Domain annotation for each model (and alignments): >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 44.7 0.0 1.5e-15 1.1e-11 1 126 [. 324 446 .. 324 448 .. 0.86 2 ! 20.9 0.0 3.4e-08 0.00025 19 111 .. 519 625 .. 501 630 .. 0.69 Alignments for each domain: == domain 1 score: 44.7 bits; conditional E-value: 1.5e-15 Ribonucleas_3_3 1 deelllqaltHkSyangrkgyNerLefLGdavLelvvseyllek.akkdegeltkklas 58 d+ l++ a+tHk ++NerLef+Gd+vL ++v ++l+ + +++++ + + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193998622 324 DKALVKLAFTHKGKTGVDAKSNERLEFVGDRVLRVAVRQMLMAHlPNESSRTINDTCVE 382 6899*********998899**********************999445555555566679 PP Ribonucleas_3_3 59 lvseeslaeiakelgLgkvlrlrkgeeetessgrekvladaleAliGAiyldkG.aeea 116 + ++ + e a elg+g+ l+ + ++++ + +lad++eA+++ ++l++G + + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193998622 383 ISRNFTWTEAATELGIGRALLT-----AVNGEHSNAMLADIIEAFLAVVFLEQGgIVPV 436 999******************9.....457888899***************87626778 PP Ribonucleas_3_3 117 kefveekilk 126 efv++ i++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193998622 437 IEFVRRFIIH 446 9999999986 PP == domain 2 score: 20.9 bits; conditional E-value: 3.4e-08 Ribonucleas_3_3 19 kgyNerLefLGdavLelv.vseyllekakkdegeltkklaslvs.eeslaeiakelg.. 73 +++ +rL+++GdavL lv ++++++ +++ g+l ++l+ ++ ++ + + a +l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193998622 519 RNQHKRLQMIGDAVLGLVgSLHLYFAFPNDGPGNLNNYLTCALEyNKIIRKRALDLTih 577 56679************955666778888889998888865444244446666666533 PP Ribonucleas_3_3 74 ...Lgkvlrl............rkgeeetessgrekvladaleAliGAiyldk 111 ++ ++ ++++ + lad++ A++GA+y+d+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193998622 578 vlvG-----NvfgamarrslskDDMDKMCGEREGHCPLADIFRAIVGAVYVDS 625 4430.....144445555775433345577777788**************996 PP >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.0 0.0 6.4e-10 4.7e-06 1 114 [] 346 431 .. 346 431 .. 0.92 2 ! 22.8 0.0 1.2e-08 9.1e-05 2 113 .. 524 625 .. 523 626 .. 0.73 Alignments for each domain: == domain 1 score: 27.0 bits; conditional E-value: 6.4e-10 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBH CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylre 59 erLef+GD vl +a+++ l+++ p+ ++ +++ ++ +n + + a +lg+ + l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193998622 346 ERLEFVGDRVLRVAVRQMLMAHLPNESSRTINDTCVEISRNFTWTEAATELGIGRALL- 403 8****************************************************99888. PP HHHHHSTT--TSSSSS.SC...............TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 60 sefdppknwlplnkdlangkgrqsisydlkeqsiadkvladvvEAliGaiyldsg 114 + +n++ ++ +lad++EA++++++l++g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193998622 404 ----TAVNGEH-----------------------SNAMLADIIEAFLAVVFLEQG 431 ....3444444.......................479***************987 PP == domain 2 score: 22.8 bits; conditional E-value: 1.2e-08 HHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHH.HHHHTSHHHHHHHHHTTTCHCHHBH CS Ribonuclease_3 2 rLefLGDavlklaittylfetypdlhegklskl.rsklvsnenlarlakklglpsylre 59 rL ++GDavl l+ + +l+ +p+ +g+l++ +l n+ + a +l ++ ++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193998622 524 RLQMIGDAVLGLVGSLHLYFAFPNDGPGNLNNYlTCALEYNKIIRKRALDLTIHVLVGN 582 9************************9999987548888888888888888887665554 PP HHHHHSTT--TSSSSS.SC...............TSHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 60 sefdppknwlplnkdlangkgrqsisydlkeqsiadkvladvvEAliGaiylds 113 ++ l ++d ++ +g+++ lad+++A++Ga+y+ds Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193998622 583 VFGAMARRSLS-KDDMDKMCGERE----------GHCPLADIFRAIVGAVYVDS 625 44444444444.222222222222..........35679*************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (712 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 325 (0.0219136); expected 296.6 (0.02) Passed bias filter: 288 (0.0194188); expected 296.6 (0.02) Passed Vit filter: 26 (0.00175308); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.33u 0.38s 00:00:00.71 Elapsed: 00:00:01.99 # Mc/sec: 933.95 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193983770 [L=881] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-48 164.0 0.1 1.1e-47 161.7 0.0 2.1 2 DEAD DEAD/DEAH box helicase 1.7e-23 82.2 0.2 5.1e-23 80.7 0.0 1.9 2 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.085 12.9 0.1 1.1 9.3 0.0 2.7 2 AAA_22 AAA domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 161.7 0.0 2.2e-51 1.1e-47 1 169 [] 288 458 .. 288 458 .. 0.95 2 ? -0.9 0.1 0.19 9.3e+02 53 75 .. 635 657 .. 588 686 .. 0.63 Alignments for each domain: == domain 1 score: 161.7 bits; conditional E-value: 2.2e-51 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT...EEEEEESSHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx...xxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq...kalivaPtre 55 tpiQa++ipl+l g+d++++a TGsGKT+af++p++++ll k++ +ali++Ptre Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193983770 288 TPIQARTIPLALAGRDICGSAVTGSGKTGAFVLPILERLLYRaKRTpatRALILCPTRE 346 89**********************************9999886766999********** PP HHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 56 LaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgk 114 La+q+++ +++f+ +++r+ l++gg + + q++ l++++divv+Tpgr++d++++ k Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193983770 347 LAAQCHSVVSRFAAFTDIRCSLVVGGLSSK-VQETELRHRPDIVVATPGRMIDHLRNAK 404 ****************************77.999999999*****************99 PP S.HCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHHH CS x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 115 l.nlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkkl 169 + + ++++lVlDEadrll++gf d+++++++ + +g +q++++SAT++++v+kl Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193983770 405 SvGFDELEILVLDEADRLLEMGFADEVEEVVRSCPKG--RQTMLFSATMTDQVDKL 458 967777***************************9555..***********999986 PP == domain 2 score: -0.9 bits; conditional E-value: 0.19 SHHHHHHHHHHHHHHTTTSSCCE CS xxxxxxxxxxxxxxxxxxxxxxx RF DEAD 53 treLaeqtlnnlkqfkkypklrv 75 +r La +t+ ++++ +++++ v Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193983770 635 SRVLATDTVAECREQIEKMERDV 657 33444444444444444433333 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.7 0.0 1e-26 5.1e-23 8 78 .] 534 604 .. 530 604 .. 0.97 2 ? -3.9 0.0 2.5 1.2e+04 13 31 .. 765 782 .. 758 787 .. 0.76 Alignments for each domain: == domain 1 score: 80.7 bits; conditional E-value: 1e-26 S-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHH CS Helicase_C 8 ikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvts 66 +++ lhg+l+q +r+e le+f++ + ++l+at+ a+rG+d+ +v++V+n+++pr+ t+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193983770 534 LNASELHGNLTQIQRLEALEKFRDAQVDFLLATDLAARGLDILGVETVVNYEMPRTLTQ 592 57889****************************************************** PP HHHHHTTSSTTT CS Helicase_C 67 yiQriGRtgRag 78 yi+r+GRt+Rag Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193983770 593 YIHRVGRTARAG 604 **********97 PP == domain 2 score: -3.9 bits; conditional E-value: 2.5 ESTTSTHHHHHHHHHHHHT CS Helicase_C 13 lhgelpqnereeileqfna 31 ++g ++ ++r+++ +q a Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193983770 765 FDG-MSRKKRRKMQQQMEA 782 566.999999999988776 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 0.0 0.00023 1.1 77 113 .. 394 440 .. 307 459 .. 0.74 2 ? -0.1 0.0 0.19 9.3e+02 50 82 .. 616 653 .. 604 677 .. 0.82 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.00023 AAA_22 77 eallralrrrrv......glliiDEaqhLrs....eelleel.rdlld 113 +++++lr+ + ++l++DEa++L ++ +ee+ r++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193983770 394 GRMIDHLRNAKSvgfdelEILVLDEADRL-LemgfADEVEEVvRSCPK 440 578889999999999999**********6.334464444444377766 PP == domain 2 score: -0.1 bits; conditional E-value: 0.19 AAA_22 50 spkellkkllralglpakg.....rltteelleallra 82 +++llk+++++ +++ + ++t +e++e++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193983770 616 GQRKLLKQIVKNTTREKVKsrvlaTDTVAECREQIEKM 653 57899999999999999888999988888888888764 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (881 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1162 (0.0783494); expected 296.6 (0.02) Passed bias filter: 298 (0.020093); expected 296.6 (0.02) Passed Vit filter: 34 (0.0022925); expected 14.8 (0.001) Passed Fwd filter: 3 (0.000202279); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.42u 0.36s 00:00:00.78 Elapsed: 00:00:02.24 # Mc/sec: 1026.65 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 [L=668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-19 68.9 0.1 2.2e-15 56.5 0.1 2.3 2 DEAD DEAD/DEAH box helicase 1.3e-14 54.4 0.0 4.9e-14 52.5 0.0 1.9 1 ResIII Type III restriction enzyme, res subunit 1.7e-14 53.4 0.0 6.7e-14 51.5 0.0 1.9 2 Helicase_C Helicase conserved C-terminal domain 0.0028 17.4 0.1 1.9 8.2 0.0 2.9 3 AAA_5 AAA domain (dynein-related subfamily) ------ inclusion threshold ------ 0.036 14.2 0.0 0.24 11.5 0.0 2.3 2 AAA_22 AAA domain 0.044 12.5 0.0 0.071 11.9 0.0 1.3 1 SNF2_N SNF2 family N-terminal domain 0.06 13.1 0.0 0.13 12.0 0.0 1.5 1 DUF87 Domain of unknown function DUF87 0.076 11.9 0.0 0.2 10.6 0.0 1.6 1 DUF2075 Uncharacterized conserved protein (DUF2075) 0.1 12.2 0.3 0.46 10.1 0.1 2.1 2 Sigma70_r2 Sigma-70 region 2 Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.5 0.1 1.3e-18 2.2e-15 6 163 .. 171 319 .. 165 325 .. 0.80 2 ! 10.1 0.0 0.00024 0.4 36 103 .. 481 557 .. 423 600 .. 0.74 Alignments for each domain: == domain 1 score: 56.5 bits; conditional E-value: 1.3e-18 HHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 6 eaiplilgggdvlvaaeTGsGKTlaflipviqilletkdqkalivaPtreLaeqtlnnl 64 + i+++l +d++++++TG+GKT ++++ + ++ + ++++ a++++ L+ q+++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 171 AYIEALL--RDLIIVMPTGTGKTFVASLLLHRMTKLNRQRLAVFIVDRIPLVFQQATVI 227 4466677..9*****************98876665546779*****************9 PP HHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTT.EEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF DEAD 65 kqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsq.vrl 122 ++ + +l+v+ + g+++ + ++ ld+ ++++v+T g l++l+ + ++ + q +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 228 EDDT---GLSVCRLCGENQNKLLVSKILDGAYNVLVVTAGCLLELLDR-EILFAQsFSV 282 9866...58*******999887777777*******************8.4555555*** PP EEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-T CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 123 lVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlp 163 +V+DE++++ + + ++l++ +l+++ +SA + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 283 VVFDECHHVTGN---HVYAKLLKHFIS-CELRIVGFSASPF 319 ***********5...344445555322.2699******875 PP == domain 2 score: 10.1 bits; conditional E-value: 0.00024 HHHHHHT.CTTEEEEEESSHHHHHHHHHHHHHHTTT..SSCCEEEETTTSE...HHHHH CS xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx...xxxxx RF DEAD 36 iqillet.kdqkalivaPtreLaeqtlnnlkqfkky..pklrvlliiggva...lardq 88 ++i+ +t k++++li + tre a+ + l++ +++ ++ + +gg++ +++q Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 481 VKII-STsKPEQCLIFVATREVAKRLSRMLSEEFSQsyGMVQFIVGHGGSDgmgWNKEQ 538 2333.344666*******************88777743333333335555555455566 PP HHHH....TT.-SEEEEEH CS xxxx....xxxxxxxxxxx RF DEAD 89 lsvl....dngvdivvgTp 103 ++ l d++++++v+T Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 539 KQILrkcrDGECRVLVSTS 557 6666889999******995 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.5 0.0 3e-17 4.9e-14 25 183 .. 177 319 .. 159 320 .. 0.76 Alignments for each domain: == domain 1 score: 52.5 bits; conditional E-value: 3e-17 TSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.. CS ResIII 25 kkrglivmaTGtGKTlvaasliarlar.....kflflvprkelleqaleefkkfeskki 78 + ++ivm+TGtGKT+va l+ r+ + ++f+v+r+ l+ q + + ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 177 LRDLIIVMPTGTGKTFVASLLLHRMTKlnrqrLAVFIVDRIPLVFQQATVI--EDDTGL 233 6789***************55555555666999***************999..222222 PP .GEEEESSS-B---SEEEEEHHHHH.................................. CS ResIII 79 efekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendesks 137 ++ +l ge+q+k+ +++ + ++++++t+ l + l++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 234 SV----------CRLCGENQNKLLV-SKILDGAYNVLVVTAGCLLELLDR--------- 272 22..........2334445555444.67777889*************986......... PP HTHHHHTTT-SEEEEETGGGTTSTT.THHHHH...---SEEEEEESS-S CS ResIII 138 eslealldefdviiiDEaHrlsakkkyreile...fkkafllglTATpe 183 + + + f v+++DE+H+++ ++ y+++l+ + ++g++A p+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 273 --EILFAQSFSVVVFDECHHVTGNHVYAKLLKhfiSCELRIVGFSASPF 319 ..335567899*********************988556678*****986 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.0 1.7 2.8e+03 7 41 .. 232 263 .. 229 265 .. 0.77 2 ! 51.5 0.0 4.1e-17 6.7e-14 20 74 .. 536 590 .. 530 593 .. 0.96 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 1.7 TS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESG CS Helicase_C 7 gikvailhgelpqnereeileqfnagkskvlvatn 41 g++v++l g n+++ +++ +g ++vlv t Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 232 GLSVCRLCG---ENQNKLLVSKILDGAYNVLVVTA 263 566677777...67778888999999999999985 PP == domain 2 score: 51.5 bits; conditional E-value: 4.1e-17 HHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHHTTS CS Helicase_C 20 nereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRt 74 +e+++il++ ++g+++vlv+t+v+e+G+d+p +++V+ f+ +s ++iQ +GR+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 536 KEQKQILRKCRDGECRVLVSTSVLEEGLDVPTCDLVVRFNGRFSLIQFIQSRGRA 590 79****************************************************5 PP >> AAA_5 AAA domain (dynein-related subfamily) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.2 0.0 0.0011 1.9 2 29 .. 180 210 .. 179 218 .. 0.81 2 ? -2.6 0.0 2.5 4.1e+03 63 81 .. 277 296 .. 251 303 .. 0.60 3 ! 5.8 0.0 0.006 9.9 12 75 .. 371 433 .. 370 511 .. 0.78 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 0.0011 EEEE--SSSSHHHHHHHGGGGB...S--EEE CS AAA_5 2 vlLvGppGtgKselaerlaeal...nrevey 29 +++v p+GtgK+++a +l++++ nr+ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 180 LIIVMPTGTGKTFVASLLLHRMtklNRQRLA 210 677779***************9877666555 PP == domain 2 score: -2.6 bits; conditional E-value: 2.5 XXG-SEEEEESGGG--.HHH CS AAA_5 63 aregeilvlDEverae.sev 81 a++ +++v+DE +++ +v Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 277 AQSFSVVVFDECHHVTgNHV 296 44555666777666665555 PP == domain 3 score: 5.8 bits; conditional E-value: 0.006 HHHHHHHGGGGBS--EEEEE--TT--HHHHH--B-X.........XXXXXXXXG-SEEE CS AAA_5 12 Kselaerlaealnreveyvqltrdtteedlkgrreiangttslvdsplvraaregeilv 70 +++l e + + +r +e +ql d ++++lkg ++ + +t ++d p+ + ++ +v Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 371 RTWLCEIVNRKACRVLENIQLGPDVSYQQLKGYVRA-SLETTRQDDPVRIKKAKSLLAV 428 799999999999***********************6.7777777777765555666666 PP EESGG CS AAA_5 71 lDEve 75 ++ +e Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 429 IGAIE 433 66665 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.0 0.00015 0.24 8 111 .. 181 307 .. 178 317 .. 0.66 2 ? -1.2 0.0 1.2 2e+03 39 73 .. 355 389 .. 330 414 .. 0.72 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 0.00015 AAA_22 8 vvtGesGvGKTtlarrlaeqldevaeaae.............karvv.......fveap 46 +++ ++G+GKT++a l+++ + ++ +a+v+ + + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 181 IIVMPTGTGKTFVASLLLHRMTKLNRQRLavfivdriplvfqQATVIeddtglsVCRLC 239 566699*************9754444444999999666666633333333332233333 PP AAA_22 47 sstspkellkkllralglpakgrltteelleallralrrrrv.glliiDEaqhLr.s.. 101 + k l +k+l + t+ lle l r + + +++ DE +h++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 240 GENQNKLLVSKILDGAYNVLVV--TAGCLLELLDREILFAQSfSVVVFDECHHVTgNhv 296 3335555566666666655555..5555557777777777779**********966356 PP AAA_22 102 .eelleelrdl 111 ++ll+++ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 297 yAKLLKHFISC 307 67777777655 PP == domain 2 score: -1.2 bits; conditional E-value: 1.2 AAA_22 39 rvvfveapsstspkellkkllralglpakgrltte 73 +v +v a s + +++++l++ + ++a + l++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 355 EVSWVRAMRSREAEQFRTWLCEIVNRKACRVLENI 389 55688888999999999999999998888744433 PP >> SNF2_N SNF2 family N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.0 4.3e-05 0.071 25 152 .. 177 297 .. 141 369 .. 0.80 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 4.3e-05 T-EEEE---TTSSCCHHHHHHHHHHCCCHS-.....EEEE--TTTHHHHHHHHHHCS.T CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SNF2_N 25 vrggiLaDemGlGKTvqvialilllkeeaerkkkkstLivvPsslldqWvneierhvsp 83 r i+ +G GKT + l++ +++ ++++ + iv l+ q + ie + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 177 LRDLIIVMPTGTGKTFVASLLLHRMTKLNRQRL--AVFIVDRIPLVFQQATVIEDDT-- 231 566777778899999888888876666666653..6888888888888889999888.. PP .T--EEE--HCCCHHHTT-SSS.TT-SEEEE-CCHHH..TSTCTCHHHHTSEEEEEEET CS xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SNF2_N 84 salrvlvyggqkkakksaakll.adydvvittydvlralrekkrksvlkkvkwkrvvlD 141 l v+ + g++++k k l +y+v++ t l e +++ l + +vv D Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 232 -GLSVCRLCGENQNKLLVSKILdGAYNVLVVTAGCLL---ELLDREILFAQSFSVVVFD 286 .5788888888766666555552689***********...889999************* PP TCCGGTTCSSH CS xxxxxxxxxxx RF SNF2_N 142 Eahrlknstsk 152 E+h++ +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 287 ECHHVTGNHVY 297 *****655433 PP >> DUF87 Domain of unknown function DUF87 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 7.7e-05 0.13 27 59 .. 181 215 .. 163 216 .. 0.82 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 7.7e-05 DUF87 27 AilgsTGsGKSntvavLleelle..kkgatililD 59 i+ TG+GK++ +++Ll+++ + ++++ + i+D Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 181 IIVMPTGTGKTFVASLLLHRMTKlnRQRLAVFIVD 215 56667*****************9888888999999 PP >> DUF2075 Uncharacterized conserved protein (DUF2075) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.0 0.00012 0.2 10 96 .. 186 292 .. 180 306 .. 0.74 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00012 DUF2075 10 aGtGKtvlalnllaeledseeertavflsgNhplvkvlrealakkl......ekkkkke 62 GtGKt +a+ ll+++++ +++r avf++ plv ++ ++ + ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 186 TGTGKTFVASLLLHRMTKLNRQRLAVFIVDRIPLVFQQATVIEDDTglsvcrLCGENQN 244 6***************999******9999999988877777776666666664444444 PP DUF2075 63 avkkpssfinnls..............kaekkkpkedvvivDEAhrll 96 ++ ++ + ++ + +++ vv++DE h ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 245 KLLVSKILDGAYNvlvvtagcllelldREILFAQSFSVVVFDECHHVT 292 444444444444466777788888776666777888888888888765 PP >> Sigma70_r2 Sigma-70 region 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.1 0.0 0.88 1.5e+03 27 42 .. 324 339 .. 323 344 .. 0.90 2 ? 10.1 0.1 0.00028 0.46 20 63 .. 346 384 .. 341 388 .. 0.81 Alignments for each domain: == domain 1 score: -1.1 bits; conditional E-value: 0.88 HHHHHHHHHHHHHCTS CS Sigma70_r2 27 vQeaflrllraverfd 42 vQ af+ l + +++f+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 324 VQSAFVELGKLRDQFR 339 8************999 PP == domain 2 score: 10.1 bits; conditional E-value: 0.00028 CCHHHHHHHHH.HHHHHHHHHCTSS-SCCHHHHHHHHHHHHHHHH CS Sigma70_r2 20 gadaeDlvQea.flrllraverfdpergvkfsawlltiirnaild 63 +++ D++Qe+ ++r++r++e + f++wl+ i+ +++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193992588 346 PSSLSDATQEVsWVRAMRSRE-----AE-QFRTWLCEIVNRKACR 384 567889999976899997777.....34.7**********99865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (668 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 559 (0.0376913); expected 296.6 (0.02) Passed bias filter: 520 (0.0350617); expected 296.6 (0.02) Passed Vit filter: 55 (0.00370845); expected 14.8 (0.001) Passed Fwd filter: 9 (0.000606837); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 0.34u 0.53s 00:00:00.87 Elapsed: 00:00:04.33 # Mc/sec: 402.70 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 [L=474] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-38 131.3 0.0 2.3e-37 128.0 0.0 2.0 2 DEAD DEAD/DEAH box helicase 2e-24 85.2 0.2 3.7e-24 84.3 0.1 1.5 1 Helicase_C Helicase conserved C-terminal domain 7.1e-05 22.8 0.0 0.00021 21.2 0.0 1.7 2 Helicase_C_2 Helicase C-terminal domain 0.0036 17.3 0.1 0.14 12.1 0.0 2.5 2 DUF2999 Protein of unknown function (DUF2999) 0.0063 16.2 2.3 0.018 14.7 0.0 2.5 3 AAA_19 Part of AAA domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 128.0 0.0 7.9e-41 2.3e-37 2 168 .. 104 272 .. 103 273 .. 0.95 2 ? 1.1 0.0 0.079 2.3e+02 46 102 .. 327 383 .. 280 399 .. 0.68 Alignments for each domain: == domain 1 score: 128.0 bits; conditional E-value: 7.9e-41 HHHHHHHHHHHTT..CEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHH CS xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgg..gdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLa 57 +iQ++++plil + ++++++a+ GsGKT++f++ +++++ + ++ +al+vaPtreLa Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 104 RIQEASLPLILANppRNLVAQAHNGSGKTACFVLGMLSRVDVNvRSPQALCVAPTRELA 162 79*********5444***************************99999************ PP HHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 58 eqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkln 116 +q+++ +++++ky+k+ l +++++++ +l++l+ + ++v+gTpg+++ +++++ln Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 163 RQIMEVAQRMGKYTKITYFLAVKDSNMDIAELKRLRVEEHVVIGTPGKIKGFIEHRNLN 221 ***************************999*****9999****************999* PP CTTEEEEEEETHHHHHST.TTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 117 lsqvrllVlDEadrllsq.gfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 ++++VlDEad++l++ gf+d++ +i +il + +q++++SAT+p+ v+k Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 222 PRAIKMFVLDEADEMLDKqGFQDECIRIKRIL--PPAVQCLFFSATFPERVQK 272 999*************977************9..556***********99987 PP == domain 2 score: 1.1 bits; conditional E-value: 0.079 EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxx RF DEAD 46 kalivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvl....dngvdivv 100 + +i + re a++ +++++ + v +++g ++++v+ ++++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 327 QSIIFVNRRETAQDLTRRMREAEHT----VSVLHGADMSTSERDRVIdefrTGKTKVLL 381 6777788888888888888877754....566655444343455555556666667766 PP EE CS xx RF DEAD 101 gT 102 +T Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 382 TT 383 66 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.3 0.1 1.2e-27 3.7e-24 3 78 .] 345 427 .. 343 427 .. 0.91 Alignments for each domain: == domain 1 score: 84.3 bits; conditional E-value: 1.2e-27 HHHTTS-EEEEST.TSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSS CS Helicase_C 3 lekkgikvailhg.elpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl 60 +++ ++ v +lhg +++++er++++++f++gk+kvl++tnv++rGid+ +v++Vin+d+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 345 MREAEHTVSVLHGaDMSTSERDRVIDEFRTGKTKVLLTTNVLSRGIDISQVSLVINYDM 403 567788999***99********************************************* PP ......SSSHHHHHHHHTTSSTTT CS Helicase_C 61 ......prsvtsyiQriGRtgRag 78 ++++y++riGRtgR+g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 404 pfnkfgRADPETYLHRIGRTGRFG 427 666666666677**********97 PP >> Helicase_C_2 Helicase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.0 1.4 4.2e+03 11 43 .. 151 183 .. 145 206 .. 0.75 2 ! 21.2 0.0 7e-08 0.00021 10 96 .. 326 409 .. 317 434 .. 0.85 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 1.4 Helicase_C_2 11 gvlvffpSyslleevverlkeeleskkievfee 43 ++l++ p +l ++++e+ ++ ++ ki f Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 151 QALCVAPTRELARQIMEVAQRMGKYTKITYFLA 183 678888999999999999999998888877765 PP == domain 2 score: 21.2 bits; conditional E-value: 7e-08 Helicase_C_2 10 ggvlvffpSyslleevverlkeeleskkievfee...keesrekvleeykeskgailla 65 g+ ++f++ ++ +++++r++e + ++v++ ++++r++v++e++++k ++ll Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 326 GQSIIFVNRRETAQDLTRRMREAEH--TVSVLHGadmSTSERDRVIDEFRTGKTKVLLT 382 788999**************99764..4555554444899******************* PP Helicase_C_2 66 vcrgkvseGidfsddllraviivglPfpnpk 96 + +s Gid+s ++++vi +Pf ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 383 TN--VLSRGIDIS--QVSLVINYDMPFNKFG 409 **..*********..8889********8875 PP >> DUF2999 Protein of unknown function (DUF2999) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.1 0.0 4.8e-05 0.14 27 65 .. 72 110 .. 58 115 .. 0.87 2 ? 2.2 0.0 0.061 1.8e+02 43 68 .. 267 292 .. 260 298 .. 0.85 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 4.8e-05 DUF2999 27 enPlaamaliqqlGipqeklqqllalvmqnPalikeave 65 + Pl ++ + +qlG+ +e lq + ++ ++P+ i+ea Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 72 NSPLFSVKTFDQLGLKDELLQGIYGMKFNKPSRIQEASL 110 579*********************************965 PP == domain 2 score: 2.2 bits; conditional E-value: 0.061 DUF2999 43 qeklqqllalvmqnPalikeaveelg 68 +e++q++ ++++++P++i e+l+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 267 PERVQKFAMQMVTEPNIISVKREQLS 292 799**************987766665 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 0.0 6.1e-06 0.018 7 62 .. 115 169 .. 112 195 .. 0.77 2 ? 0.2 0.0 0.21 6.2e+02 31 73 .. 319 356 .. 305 361 .. 0.64 3 ? -3.7 0.4 3.6 1.1e+04 21 28 .. 374 381 .. 374 382 .. 0.86 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 6.1e-06 AAA_19 7 la.gnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraakrlserl 62 ++ +++l++ ++ G+GKT+ + + +++ ++ + + l+vapt++ a+++ e+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 115 ANpPRNLVA-QAHNGSGKTACFVLGMLSRVD-VNVRsP-QALCVAPTRELARQIMEVA 169 456788999.*********988888888883.344435.89*************9987 PP == domain 2 score: 0.2 bits; conditional E-value: 0.21 AAA_19 31 iaallaarekpgrsvllvaptgraakrlserlllgvekastih 73 i all+ g+s+++v ++ a+ l +r+ + + s++h Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 319 IYALLTI----GQSIIFV-NRRETAQDLTRRMREAEHTVSVLH 356 4555655....9999999.455566666677733334455555 PP == domain 3 score: -3.7 bits; conditional E-value: 3.6 AAA_19 21 tGKTttla 28 tGKT +l+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999064 374 TGKTKVLL 381 9***9986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (474 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 451 (0.0304093); expected 296.6 (0.02) Passed bias filter: 409 (0.0275774); expected 296.6 (0.02) Passed Vit filter: 33 (0.00222507); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.23u 0.49s 00:00:00.72 Elapsed: 00:00:03.88 # Mc/sec: 318.89 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989762 [L=351] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-20 72.6 0.0 5.2e-20 72.0 0.0 1.4 1 Ribonuclease_3 Ribonuclease III domain 6.8e-17 61.6 0.1 9.7e-12 44.9 0.0 2.2 2 Ribonucleas_3_3 Ribonuclease-III-like Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.0 0.0 7e-24 5.2e-20 1 114 [] 16 182 .. 16 182 .. 0.85 Alignments for each domain: == domain 1 score: 72.0 bits; conditional E-value: 7e-24 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBH CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylre 59 +rLef+GDavl+ ++t+ +f++ +g ++++r++ v++++ ++a +++l++++r+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989762 16 QRLEFVGDAVLDACVTEFIFKESNMFEPGLMTHMRQAAVNSRFIGFVAVQMNLHKHIRY 74 7*******************766666********************************9 PP HHHHHSTT--TSSSSS.SC........................................ CS Ribonuclease_3 60 sefdppknwlplnkdlangk....................................... 79 + +++++++ ++++ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989762 75 FSTHLKQSIEAFKEHVSLKTsipqfpefalgaksqigppvvlseadgssannaidldnd 133 88888888888555555555678888888888888888888888888888888899999 PP ...................................TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 80 .....................grqsisydlkeqsiadkvladvvEAliGaiyldsg 114 g+q+ + a+kvl+dv+EA+++a+y+dsg Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989762 134 vlkiasaasdllpkelldimwGFQE-------HFDAPKVLSDVFEAVMAAVYFDSG 182 9999999988888866666665555.......799*******************97 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 44.9 0.0 1.3e-15 9.7e-12 9 82 .. 2 77 .. 1 95 [. 0.86 2 ! 14.6 0.0 3.2e-06 0.023 92 113 .. 162 183 .. 134 189 .. 0.85 Alignments for each domain: == domain 1 score: 44.9 bits; conditional E-value: 1.3e-15 Ribonucleas_3_3 9 ltHkSyangrkgyNerLefLGdavLelvvseyllekakk.degeltkklaslvseeslaei 68 ltH S+ + + ++++rLef+GdavL+ +v+e+++++ ++ + g +t ++++ v+++ + + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989762 2 LTHPSWFESEARCYQRLEFVGDAVLDACVTEFIFKESNMfEPGLMTHMRQAAVNSRFIGFV 62 9******9***************************9887467999**************** PP Ribonucleas_3_3 69 akelgLgkvlrl.rk 82 a +++L k++r+ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989762 63 AVQMNLHKHIRYfST 77 ***********9533 PP == domain 2 score: 14.6 bits; conditional E-value: 3.2e-06 Ribonucleas_3_3 92 rekvladaleAliGAiyldkGa 113 kvl+d++eA+ +A+y+d+G Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989762 162 APKVLSDVFEAVMAAVYFDSGQ 183 568*****************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (351 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 298 (0.020093); expected 296.6 (0.02) Passed bias filter: 282 (0.0190142); expected 296.6 (0.02) Passed Vit filter: 21 (0.00141595); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.21u 0.40s 00:00:00.61 Elapsed: 00:00:02.86 # Mc/sec: 320.36 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 [L=1382] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.2e-23 80.7 0.0 1.3e-13 51.0 0.0 3.6 4 Ribonucleas_3_3 Ribonuclease-III-like 1.7e-16 60.6 10.4 2.4e-09 37.6 0.0 4.0 3 Ribonuclease_3 Ribonuclease III domain 2e-09 37.2 0.0 5.1e-09 35.9 0.0 1.6 1 Maelstrom piRNA pathway germ-plasm component Domain annotation for each model (and alignments): >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.0 0.42 2.1e+03 16 36 .. 42 62 .. 39 84 .. 0.77 2 ! 51.0 0.0 2.6e-17 1.3e-13 2 109 .. 446 546 .. 445 550 .. 0.89 3 ! 24.7 0.0 3.4e-09 1.7e-05 19 115 .. 634 743 .. 625 749 .. 0.75 4 ? -2.3 0.0 0.79 3.9e+03 74 104 .. 1238 1269 .. 1206 1286 .. 0.75 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 0.42 Ribonucleas_3_3 16 ngrkgyNerLefLGdavLelv 36 n+++++N++L+ L +++L+l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 42 NNNNNNNRKLNGLRQQLLQLR 62 567899************984 PP == domain 2 score: 51.0 bits; conditional E-value: 2.6e-17 Ribonucleas_3_3 2 eelllqaltHkSyangrkgyNerLefLGdavLelvvseyllek.akkdegeltkklasl 59 +++++qaltH+S++ +NerLef+Gd+vL++++s lle+ ++ ++g+l + +++l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 446 NKIIQQALTHSSFS---PISNERLEFVGDRVLSFAISVNLLEElPHLPDGSLYQLRTEL 501 6899*********9...579***************9999999945669*********** PP Ribonucleas_3_3 60 vseeslaeiakelgLgkvlrlrkgeeetessgrekvladaleAliGAiyl 109 ++++ ++a lg+ + l++++ +++ + ada+eA+ +A+y+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 502 CRNDLFGKVAAHLGMTRALMVGD-----NQEVSPDMSADACEAVAAALYM 546 *********************66.....333446789************7 PP == domain 3 score: 24.7 bits; conditional E-value: 3.4e-09 Ribonucleas_3_3 19 kgyNerLefLGdavLelvvseyllekakk..degeltkklaslvs.eeslaeiakelgL 74 k +++ L+fLGd v+ lvv++++++ ++ g lt+ + + + + + a+elg+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 634 KINYRLLSFLGDTVIRLVVATHFYRALPTsgTPGVLTEIGKLFFKsHYEFGHAARELGI 692 5678889******************9555224678887776544426689********* PP Ribonucleas_3_3 75 gkvlrl......rkgeee....tessgrekvladaleAliGAiyldkGaee 115 kvl r+++ +e +++++ + a+ AliGA+ ld+ +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 693 HKVLIEcnprlpRDQKAGlesgSEVTELRSFQSYAFSALIGAVLLDSRFQK 743 ***9888999994444441002333444669999************88765 PP == domain 4 score: -2.3 bits; conditional E-value: 0.79 Ribonucleas_3_3 74 Lgkvlrl.rkgeeetessgrekvladaleAli 104 L++v +l ++ e++ + ++r ++ ++a eAl+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 1238 LERVRLLiQNAEKAANVEDRMEIFGSAHEALL 1269 55555555677777888888889999999886 PP >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -8.3 6.5 3 1.5e+04 70 85 .. 16 36 .. 2 55 .. 0.41 2 ! 37.6 0.0 4.9e-13 2.4e-09 1 111 [. 464 546 .. 464 549 .. 0.91 3 ! 27.2 0.0 8.3e-10 4.1e-06 3 113 .. 640 739 .. 638 740 .. 0.84 Alignments for each domain: == domain 1 score: -8.3 bits; conditional E-value: 3 T.....SSSSS.SC....... CS Ribonuclease_3 70 p.....lnkdlangkgrqsis 85 + n++++n++++++i+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 16 NnnnntNNNNNNNNTNNNNIN 36 111221112222222222222 PP == domain 2 score: 37.6 bits; conditional E-value: 4.9e-13 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBH CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylre 59 erLef+GD vl++ai+ l+e+ p+l+ g l +lr++l++n+ ++a lg+ + l + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 464 ERLEFVGDRVLSFAISVNLLEELPHLPDGSLYQLRTELCRNDLFGKVAAHLGMTRALMV 522 8***************************************************9997773 PP HHHHHSTT--TSSSSS.SC...............TSHHHHHHHHHHHHHHHH CS Ribonuclease_3 60 sefdppknwlplnkdlangkgrqsisydlkeqsiadkvladvvEAliGaiyl 111 + +q++++ + ad+ EA+++a+y+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 523 --------GD--------------------NQEVSPDMSADACEAVAAALYM 546 ........22....................3556899*************98 PP == domain 3 score: 27.2 bits; conditional E-value: 8.3e-10 HHHHHHHHHHHHHHHHHHHHSTTS.SHHHHHHH.HHHHTSHHHHHHHHHTTTCHCHHBH CS Ribonuclease_3 3 LefLGDavlklaittylfetypdl.hegklskl.rsklvsnenlarlakklglpsylre 59 L fLGD v+ l++ t++++ p +g l+++ + + s + a++lg+++ l+e Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 640 LSFLGDTVIRLVVATHFYRALPTSgTPGVLTEIgKLFFKSHYEFGHAARELGIHKVLIE 698 89*****************9999999*******667777888999*************8 PP HHHHHSTT--TSSSSS.SC...............TSHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 60 sefdppknwlplnkdlangkgrqsisydlkeqsiadkvladvvEAliGaiylds 113 + ++p+ ++ +l+ g s e +++ + ++ AliGa++lds Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 699 CNPRLPRDQKA---GLESG----S------EVTELRSFQSYAFSALIGAVLLDS 739 88888877776...23332....2......3444679***************97 PP >> Maelstrom piRNA pathway germ-plasm component # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.9 0.0 1e-12 5.1e-09 5 187 .. 900 1081 .. 897 1099 .. 0.80 Alignments for each domain: == domain 1 score: 35.9 bits; conditional E-value: 1e-12 Maelstrom 5 ddiyvPaEiaivef........sLkegiiekfhtlInPgqlifgfrrrakhhsdetH 53 +++yvP Eia+v+f s ++ +++++h+l +Pg ++ f+++++ + ++ H Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 900 NNEYVPNEIALVRFaihttsdqSISTEVLDQYHSLLYPGAIPDDFKQTVAYGRKRIH 956 6789******99994444444445667899*************************** PP Maelstrom 54 qlplppnalg.eedlkelvnellsflesnseeeksliiltkteeipvvksclknLae 109 + ++ g ++++++++ ++s +e+++ ++++l+k + cl++ a Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 957 GINYDRKEEGaTDEFHQVWSRIVSVIEQSP---PPRLLLVKGHAEGTDVGCLRWVAY 1010 ****98776615679***************...9**********************8 PP Maelstrom 110 dakeeed...ikvsdfeyllldlkkekldvegsrkekpskyitdallekdfyeyesn 163 +a + + i v d+ +++ lk ++ s++ +d l + + + + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 1011 KASKSIKdlnIFVMDIIEIIDYLKAHLS----------SSRPRDPSLAHPYPKPSHH 1057 8877666666777777776666655555..........2333333333344478999 PP Maelstrom 164 isCeyHeendrskyCalstvkrwa 187 +C++H ++ + +Cal++ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994002 1058 LKCDFHLSRASEFHCALADTMALV 1081 ****************99876555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1382 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1261 (0.0850246); expected 296.6 (0.02) Passed bias filter: 279 (0.0188119); expected 296.6 (0.02) Passed Vit filter: 48 (0.00323646); expected 14.8 (0.001) Passed Fwd filter: 8 (0.000539411); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.60u 0.38s 00:00:00.98 Elapsed: 00:00:02.75 # Mc/sec: 1311.81 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 [L=400] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-42 143.5 0.9 1.7e-41 141.5 0.4 1.9 2 DEAD DEAD/DEAH box helicase 6.1e-29 99.6 0.1 1.3e-28 98.6 0.1 1.6 1 Helicase_C Helicase conserved C-terminal domain 0.001 18.7 0.1 0.003 17.1 0.1 1.7 1 AAA_30 AAA domain 0.0014 18.7 0.2 0.0044 17.1 0.1 1.8 1 AAA_22 AAA domain 0.0052 16.5 1.0 0.0093 15.7 0.2 1.8 2 AAA_19 Part of AAA domain ------ inclusion threshold ------ 0.034 12.5 0.0 0.26 9.6 0.0 2.1 2 DUF1253 Protein of unknown function (DUF1253) 0.056 13.0 0.0 0.095 12.3 0.0 1.3 1 Helicase_RecD Helicase 0.076 12.0 0.4 0.27 10.2 0.0 2.0 3 CMS1 U3-containing 90S pre-ribosomal complex subuni Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 141.5 0.4 9.1e-45 1.7e-41 2 167 .. 49 212 .. 48 214 .. 0.95 2 ? -0.1 0.0 0.29 5.4e+02 60 102 .. 279 320 .. 232 336 .. 0.66 Alignments for each domain: == domain 1 score: 141.5 bits; conditional E-value: 9.1e-45 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeq 59 +iQ++ai i++g+d++++a+ G+GKT+ +i ++q ++ ++ +ali++PtreLa q Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 49 AIQKRAIVPIVTGRDTICQAQSGTGKTATLSISALQVADTKiREVQALILSPTRELAVQ 107 69**********************************999988888************** PP HHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 60 tlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnls 118 + + + ++++ +k++++++igg++ ++ ++ld gv+iv gTpgr+ d++++g+l++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 108 IQKVVLSVGDFMKVQAHACIGGTSVG-EDIRKLDAGVHIVSGTPGRVYDMIKRGNLRTR 165 ************************98.88889*999*********************9* PP TEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 119 qvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvk 167 +++llVlDEad++lsqgf++q+++i ++l + +lqv+++SATlp++v Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 166 NIKLLVLDEADEMLSQGFKEQIYDIYRRL--PPTLQVVLVSATLPHEVL 212 ****************************9..667***********7765 PP == domain 2 score: -0.1 bits; conditional E-value: 0.29 HHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 60 tlnnlkqfkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 +++++ ++ v++i+g+++++ ++++ + ++ +++++T Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 279 LSDKMTE----NNFTVACIHGDMPQD-ERDRIMssfrFGEKRVLITT 320 4444333....456899999999855.33333345654445555555 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.6 0.1 7.2e-32 1.3e-28 3 78 .] 283 358 .. 281 358 .. 0.97 Alignments for each domain: == domain 1 score: 98.6 bits; conditional E-value: 7.2e-32 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlp 61 ++++++ va++hg++pq+er++i+++f+ g+++vl++t+v++rGid+ +v++Vin+dlp Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 283 MTENNFTVACIHGDMPQDERDRIMSSFRFGEKRVLITTDVLARGIDVSQVSLVINYDLP 341 67899****************************************************** PP SSHHHHHHHHTTSSTTT CS Helicase_C 62 rsvtsyiQriGRtgRag 78 s++ yi+riGR gR+g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 342 NSRELYIHRIGRSGRFG 358 ***************87 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 0.1 1.6e-06 0.003 4 108 .. 49 181 .. 47 203 .. 0.71 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 1.6e-06 AAA_30 4 aeQkeaveavltsgdrvavvqGpAGtGKttvlkalrealea...agkrviglAptgkaa 59 a Qk+a+ ++t +d + q+ GtGKt +l+ + +++ ++ + ++l+pt + a Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 49 AIQKRAIVPIVTGRD--TICQAQSGTGKTATLSISALQVADtkiREVQALILSPTRELA 105 569*******99998..78899**********987666666455346667778888888 PP AAA_30 60 kvLeee...............................lgiearTiasllerldkaeaeg 87 ++++ + i + T ++ +++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 106 VQIQKVvlsvgdfmkvqahaciggtsvgedirkldagVHIVSGTPGRVYDMIKRGNL-- 162 888877677666666666666666665555555444466777777777777777444.. PP AAA_30 88 rkeldaktllvvDEAgmvdtr 108 ++++ +llv+DEA + ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 163 --RTRNIKLLVLDEADEMLSQ 181 ..4888889999999755444 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 0.1 2.4e-06 0.0044 7 122 .. 64 203 .. 60 210 .. 0.64 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 2.4e-06 AAA_22 7 lvvtGesGvGKTtlarrlaeqldevaeaae...................karvv..... 41 +++ ++sG+GKT ++ a+q +++e + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 64 TICQAQSGTGKTATLSISALQV-ADTKIREvqalilsptrelavqiqkvV---Lsvgdf 118 578899*********9999986.455555568888886655555543320...133331 PP AAA_22 42 .fveapsstspkellkkllralglpakg..............rltteelleallralrr 85 +v+a + ++ ++t ++++++ r r Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 119 mKVQAHACIGGTS--------------VgedirkldagvhivSGTPGRVYDMIKRGNLR 163 2333333334444..............23444444444444688999999888887666 PP AAA_22 86 rrv.glliiDEaqh.Lrseelleelrdlld..etgvklvlv 122 +r +ll++DEa+ L s+ e++ d++ +++vlv Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 164 TRNiKLLVLDEADEmL-SQGFKEQIYDIYRrlPPTLQVVLV 203 6666**********88.777777776666655555666655 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.2 5e-06 0.0093 10 62 .. 62 112 .. 53 140 .. 0.79 2 ? -2.7 0.0 2.6 4.9e+03 6 20 .. 138 151 .. 134 152 .. 0.76 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 5e-06 AAA_19 10 npllvvtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraakrlserl 62 + + ++ GtGKT+tl + +++++ k + l+++pt++ a ++++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 62 RDTIC-QAQSGTGKTATLSISALQVADT--KIrEVQALILSPTRELAVQIQKVV 112 55555.9999*****9999889998854..666888************999887 PP == domain 2 score: -2.7 bits; conditional E-value: 2.6 AAA_19 6 alagnpllvvtGgPG 20 l+ +++ +v+G PG Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 138 KLD-AGVHIVSGTPG 151 455.78889999999 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 0.0 0.1 1.9e+02 27 59 .. 82 114 .. 62 124 .. 0.74 2 ? 9.6 0.0 0.00014 0.26 316 388 .. 279 349 .. 247 365 .. 0.86 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 0.1 DUF1253 27 deelrdqgftrpkvLillpfrniakevvdllik 59 + ++ d + Lil p+r+ a+++ + +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 82 ALQVADTKIREVQALILSPTRELAVQIQKVVLS 114 55677777888899**********998776655 PP == domain 2 score: 9.6 bits; conditional E-value: 0.00014 DUF1253 316 irnylkkekisFaaiseytsekkisrarklFkkgrkkiLLvteRlhfyrRykikgvkkv 374 +++ +++++++ a i+ + + r+ + F g+k++L++t+ l r + + +v+ v Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 279 LSDKMTENNFTVACIHGDMPQDERDRIMSSFRFGEKRVLITTDVLA--RGIDVSQVSLV 335 67788999999999999999**********************9876..99********* PP DUF1253 375 ifyslPefpefYse 388 i y lP+ +e+Y Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 336 INYDLPNSRELYIH 349 ************75 PP >> Helicase_RecD Helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 5.1e-05 0.095 3 99 .. 67 175 .. 65 192 .. 0.71 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 5.1e-05 Helicase_RecD 3 tAdRGRGKSaalGlalaalvaegk..snilvtapskenvktlfeflekglealglke.. 57 +A+ G+GK+a+l +++ +++ ++ ++ l+ +p++e + ++ + + + + ++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 67 QAQSGTGKTATLSISALQVADTKIreVQALILSPTRELAVQIQKVVLSVGDFMKVQAha 125 6999*************999998777999**********99999998888888877777 PP Helicase_RecD 58 .........eekkekaekaevrve....kqrieyiapdellklkeqadllvvDEA 99 ++ + + y ++ ++++ +llv+DEA Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 126 ciggtsvgeD-IRKLDAGV----HivsgTPGRVYDMIKRGNLRTRNIKLLVLDEA 175 8877665421.11111112....12234444445555555555556788888888 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.0 1 1.9e+03 122 142 .. 68 88 .. 63 99 .. 0.79 2 ? 10.2 0.0 0.00015 0.27 178 209 .. 143 174 .. 131 185 .. 0.90 3 ? -2.6 0.0 1.2 2.3e+03 35 67 .. 253 284 .. 245 287 .. 0.72 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 1 CMS1 122 ksngsPhtlvltlaalRaaDl 142 +++g+ +t l+++al +aD Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 68 AQSGTGKTATLSISALQVADT 88 567888999999999999996 PP == domain 2 score: 10.2 bits; conditional E-value: 0.00015 CMS1 178 igiavGtpgRiadLleeeslsvdeLkrivlDa 209 + i GtpgR+ d+++ + l ++k +vlD Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 143 VHIVSGTPGRVYDMIKRGNLRTRNIKLLVLDE 174 56788*************************96 PP == domain 3 score: -2.6 bits; conditional E-value: 1.2 CMS1 35 klketqDveaglneavarmdpelLadylasklk 67 l ++ D +++a++ + ++ ad+l++k++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988832 253 TLCDLYDT-LTITQAIIFCNTRKKADWLSDKMT 284 45555553.368999999999999999998875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (400 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 429 (0.0289259); expected 296.6 (0.02) Passed bias filter: 387 (0.026094); expected 296.6 (0.02) Passed Vit filter: 35 (0.00235992); expected 14.8 (0.001) Passed Fwd filter: 8 (0.000539411); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.25u 0.45s 00:00:00.70 Elapsed: 00:00:03.40 # Mc/sec: 307.10 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 [L=668] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-41 141.8 0.1 1.4e-41 141.8 0.1 1.7 2 DEAD DEAD/DEAH box helicase 4.1e-25 87.4 0.2 4.1e-25 87.4 0.1 2.0 2 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.68 8.1 49.3 1 7.4 34.2 1.3 1 PAT1 Topoisomerase II-associated protein PAT1 0.85 9.4 41.3 1.3 8.8 28.7 1.2 1 TFIIA Transcription factor IIA, alpha/beta subunit 4.4 4.9 17.6 5.9 4.5 12.2 1.1 1 Dicty_REP Dictyostelium (Slime Mold) REP protein Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.0 1.2 2.9 8.6e+03 140 146 .. 145 151 .. 124 176 .. 0.45 2 ! 141.8 0.1 4.6e-45 1.4e-41 2 167 .. 318 482 .. 317 484 .. 0.95 Alignments for each domain: == domain 1 score: -4.0 bits; conditional E-value: 2.9 HHHHHHH CS xxxxxxx RF DEAD 140 lnqilqi 146 ++q q+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 145 YQQQQQQ 151 2211111 PP == domain 2 score: 141.8 bits; conditional E-value: 4.6e-45 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeq 59 piQ+e+ip +l g+d+l++a+ G+GKT+ flip++q++ + ++ +++i++PtreLa q Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 318 PIQEETIPIALAGRDILARAKNGTGKTASFLIPALQRVDTDvSKIQVVILVPTRELAFQ 376 8*************************************9988888************** PP HHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 60 tlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnls 118 t + +k+++k++++++++ +gg++l+ d+ +l+n v+i++gTpgr++dl +++ +ls Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 377 TSQVCKELGKHMNVQIMATTGGTSLK-DDIIRLNNPVHILIGTPGRVVDLARKTIADLS 434 ************************99.99999********************8766*** PP TEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 119 qvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvk 167 ++++lV+DEad+lls +f++ ++++ + +k++q++++SAT+p +vk Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 435 KCEMLVMDEADKLLSPEFQPLVDELFGYV-VPKTCQILLFSATFPVTVK 482 **************************997.7789**********98877 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.5 2 6e+03 13 28 .. 145 160 .. 134 174 .. 0.54 2 ! 87.4 0.1 1.4e-28 4.1e-25 3 78 .] 551 626 .. 549 626 .. 0.97 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 2 ESTTSTHHHHHHHHHH CS Helicase_C 13 lhgelpqnereeileq 28 ++ + +q+++++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 145 YQQQQQQQQQQQQQQA 160 4444445555444444 PP == domain 2 score: 87.4 bits; conditional E-value: 1.4e-28 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlp 61 ++ g++++++h++++q++r++++++f++g ++ lv+++ + rGid+++vnvVinfd+p Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 551 ITELGYSCFFIHARMKQEDRNRVFHDFRNGGCRNLVSSDLFTRGIDIQAVNVVINFDFP 609 6789******************************************************* PP SSHHHHHHHHTTSSTTT CS Helicase_C 62 rsvtsyiQriGRtgRag 78 ++ ++y++riGR gR+g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 610 KNAETYLHRIGRSGRFG 626 ***************87 PP >> PAT1 Topoisomerase II-associated protein PAT1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 34.2 0.00035 1 185 321 .. 113 225 .. 35 275 .. 0.38 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.00035 PAT1 185 qspprqaalpqqakpelpsqypqppqqlqqevqqqlqqapsqapaqaalpaqlpqqlqn 243 + pp + +++q+ + q++q + + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 113 PYPPG----------------------------------SQYQMQQY--QLQQQQYQLQ 135 11221..................................11111111..2222222222 PP PAT1 244 lqqqqlpqlsqqmppqpvqppqqqqqqvlklpqaqppplqqlsaspqlaqqqlaslplp 302 lqqqq+ q+ qq+++q++q++qqq+ ++ + ++ + ++++ s + +qqq+ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 136 LQQQQQYQQYQQQQQQQQQQQQQQAPKAATPSSTVNTSSNTNPTSASAPQQQQHDQETD 194 22222222222222222222221221111111111122222222222222222222222 PP PAT1 303 qqpqqkalqqqeqgqqea............n 321 qqp+q+++q +eq+q+++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 195 QQPKQQQQQPDEQKQNSDvpsetssaaspaS 225 2222222222211111112222222222220 PP >> TFIIA Transcription factor IIA, alpha/beta subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 28.7 0.00045 1.3 76 282 .. 68 287 .. 43 314 .. 0.46 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.00045 XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX.........XXXXXXXXXXXXX CS TFIIA 76 qpkkskaataaasaqenspssqeta.ksnaatkleag........kvpanvtiktesgq 125 ++ ++a + +s++++s + ++t+ ++n a++ + g p +++++ ++ q Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 68 KQADPNAPPGLNSNSNTSGGASNTSaNANNASQNPYGygaggfrsPYPPGSQYQMQQYQ 126 33333333333333333333333330223333333334444444444455555555555 PP XXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX... CS TFIIA 126 lakvavpvmntqtaagsttlttpaqqrsaqaleqpagaaaaaqassaqqqqapvss..n 182 l +++ + +q++++++ +++ +qq++ q++++p a+ ++ ++ ++++ +p s+ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 127 LQQQQYQLQLQQQQQYQQYQQQQQQQQQQQQQQAPKAATPSSTVN-TSSNTNPTSAsaP 184 555555555555555555444444444333333333333333333.2223333333112 PP ...XXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX...X............XXXXX CS TFIIA 183 aesqaqqqpnklvqqqqtdgasddvkasvprvleaaap...lqenqlqqvlksqiessi 238 +++q q+++++ +qqq++++++++++ vp ++ aa+ q ++ s+++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 185 QQQQHDQETDQQPKQQQQQPDEQKQNSDVPSETSSAASpasSSTPQVDSSSSSNTQAHA 243 22222233333333333333333334445555444444444444555555555555555 PP XXXXXXXXXXXXXXXXXX..............XXXXXXXXXXXX CS TFIIA 239 keleakkaskvleqkvkaakqekkskaveieilQlDGagdtsde 282 + ++ +a++ ++ +++ +e+ + + +i+ DG + t+d Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 244 ASSSSPSAATLSSSGPSESGTEEGDWKSRLNIPTADGRLKTEDV 287 55555555555555555555555555555577777777777765 PP >> Dicty_REP Dictyostelium (Slime Mold) REP protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 12.2 0.002 5.9 231 348 .. 140 257 .. 123 309 .. 0.64 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.002 Dicty_REP 231 dieqesiesentqrensqpskeknktttttttttttt..sqartrkrkaidddklsenq 287 ++ q+ + +++q++++q++ k++t +t +t+ t + a ++++ d+++ ++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 140 QQYQQYQQQQQQQQQQQQQQAPKAATPSSTVNTSSNTnpTSASAPQQQQHDQETDQQPK 198 33333333344444444444444444443333332220022233344445556666666 PP Dicty_REP 288 akekkknskksdddpqsdfskkssrksgslkdvrvdnisdseldddvnesispeekiis 346 +++++++++k ++d s+ s+ +s s s +v+ s+++ + +s+sp+ +s Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 199 QQQQQPDEQKQNSDVPSETSSAASPASSSTPQVDSSSSSNTQAH--AASSSSPSAATLS 255 66666666666666668888889999999988888877744444..4455555555555 PP Dicty_REP 347 vs 348 +s Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193999202 256 SS 257 44 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (668 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 3416 (0.230328); expected 296.6 (0.02) Passed bias filter: 748 (0.0504349); expected 296.6 (0.02) Passed Vit filter: 254 (0.0171263); expected 14.8 (0.001) Passed Fwd filter: 59 (0.00397815); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.74u 0.71s 00:00:01.45 Elapsed: 00:00:06.18 # Mc/sec: 282.15 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194002976 [L=661] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-49 167.9 0.0 1.8e-48 164.2 0.0 2.1 2 DEAD DEAD/DEAH box helicase 5.8e-27 93.3 0.3 1.6e-26 91.9 0.2 1.7 1 Helicase_C Helicase conserved C-terminal domain 0.0024 17.7 0.0 0.0068 16.2 0.0 1.7 1 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.07 12.1 0.0 0.15 11.1 0.0 1.4 1 CMS1 U3-containing 90S pre-ribosomal complex subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.2 0.0 4.7e-52 1.8e-48 1 168 [. 220 410 .. 220 411 .. 0.94 2 ? 1.4 0.0 0.05 1.9e+02 68 102 .. 482 520 .. 436 528 .. 0.77 Alignments for each domain: == domain 1 score: 164.2 bits; conditional E-value: 4.7e-52 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT.............. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............. RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq.............. 45 tp+Q+++ip ++ g+d++++a+TGsGKT+afl p++ ++ ++ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194002976 220 TPVQRNSIPIVMAGRDLMACAQTGSGKTAAFLFPILANIHKEWPRgrdrgdsygrgapg 278 79*************************************8874447************* PP ........EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.- CS ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 ........kalivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngv 96 al++aPtreLa q+++++++f +r ++++gg+++ ql+ l++g+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194002976 279 trrkktqpVALVLAPTRELASQIFKECEKFSYRSPFRGCVVYGGTDIG-SQLRDLERGC 336 *******************************9999***********99.9*****999* PP SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHH..SHHCTTS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF DEAD 97 divvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqi..lcdgkrl 153 di+v+Tpgrl+d++++g+ +l q+r+lVlDEadr+l++gf++q+++i+++ + +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194002976 337 DILVATPGRLVDMIERGRVSLDQIRYLVLDEADRMLDMGFEPQIRRIVEKedMPYTEDR 395 *****************99*****************************9933333337* PP EEEEEESS-THHHHH CS xxxxxxxxxxxxxxx RF DEAD 154 qvivlSATlpkdvkk 168 q++++SAT+p+++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194002976 396 QTLMFSATFPRQIQN 410 **********99886 PP == domain 2 score: 1.4 bits; conditional E-value: 0.05 TTT.SSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxx.xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 68 kky.pklrvlliiggvalardqlsvl....dngvdivvgT 102 ++ +l +++i+g+ + +rd++ l +++v i+v+T Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194002976 482 AEGrRGLAAVAIHGDRS-QRDREDALhafrSQRVPILVAT 520 44467789999999999.558888888999888*****99 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.9 0.2 4.2e-30 1.6e-26 6 78 .] 486 558 .. 483 558 .. 0.97 Alignments for each domain: == domain 1 score: 91.9 bits; conditional E-value: 4.2e-30 TTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSH CS Helicase_C 6 kgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsv 64 +g+ ++++hg+ +q++re+ l+ f++++ ++lvat+va+rG+d+p+v++Vin+dlp++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194002976 486 RGLAAVAIHGDRSQRDREDALHAFRSQRVPILVATDVAARGLDIPNVTHVINYDLPTDI 544 688999***************************************************** PP HHHHHHHTTSSTTT CS Helicase_C 65 tsyiQriGRtgRag 78 ++y++riGRtgRag Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194002976 545 DDYVHRIGRTGRAG 558 ************97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.0 1.8e-06 0.0068 30 184 .] 238 406 .. 224 406 .. 0.77 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 1.8e-06 EEESTTSTHHHHHH.HHHHHH-S..........................-EEEEESSHH CS ResIII 30 ivmaTGtGKTlvaa.sliarlar..........................kflflvprke 61 + TG+GKT + ++a++++ +l+l+p++e Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194002976 238 ACAQTGSGKTAAFLfPILANIHKewprgrdrgdsygrgapgtrrkktqpVALVLAPTRE 296 5578******9988435566666778888888888888888888889999********* PP HHHHHHHHGGGGTGG...GEEEESSS-B---SEEEEEHHHHH................. CS ResIII 62 lleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiq 120 l +q +e +kf+ + + v + + +++++++ d + ++i+++t Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194002976 297 LASQIFKECEKFSYR---SPFRGC-VVYGG---TDIGSQLRD----LERGCDILVATPG 344 ******999333332...323333.22222...234444444....44579******** PP .................HTHHHHTTT-SEEEEETGGGTTSTT....THHHHH......- CS ResIII 121 klhkaleeeeendeskseslealldefdviiiDEaHrlsakkk...yreile......f 170 +l +e+ + +ld+ +++ DEa r+ ++ r+i+e Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194002976 345 RLVDMIER-----------GRVSLDQIRYLVLDEADRMLDMGFepqIRRIVEkedmpyT 392 ***88875...........578899999***********99987777888889999998 PP --SEEEEEESS-S- CS ResIII 171 kkafllglTATper 184 ++ l ++AT++r Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194002976 393 EDRQTLMFSATFPR 406 88889******976 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 4e-05 0.15 180 209 .. 338 367 .. 333 372 .. 0.92 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 4e-05 CMS1 180 iavGtpgRiadLleeeslsvdeLkrivlDa 209 i v tpgR++d++e + +s+d+++++vlD Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194002976 338 ILVATPGRLVDMIERGRVSLDQIRYLVLDE 367 6789************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (661 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 370 (0.0249477); expected 296.6 (0.02) Passed bias filter: 288 (0.0194188); expected 296.6 (0.02) Passed Vit filter: 40 (0.00269705); expected 14.8 (0.001) Passed Fwd filter: 8 (0.000539411); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.34u 0.37s 00:00:00.71 Elapsed: 00:00:02.52 # Mc/sec: 684.69 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989232 [L=927] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-34 117.7 0.0 6.7e-34 116.8 0.0 1.4 1 DEAD DEAD/DEAH box helicase 4.3e-22 77.7 0.2 1e-21 76.5 0.1 1.7 1 Helicase_C Helicase conserved C-terminal domain 0.00061 19.4 0.2 0.0019 17.8 0.2 2.0 1 AAA_19 Part of AAA domain ------ inclusion threshold ------ 0.014 14.5 0.2 0.027 13.6 0.2 1.4 1 PBP_sp32 Proacrosin binding protein sp32 0.024 14.2 0.0 0.057 12.9 0.0 1.6 1 AAA_30 AAA domain 0.3 9.8 0.0 0.47 9.1 0.0 1.3 1 Terminase_6 Terminase-like family Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 116.8 0.0 2.7e-37 6.7e-34 2 164 .. 45 206 .. 44 211 .. 0.95 Alignments for each domain: == domain 1 score: 116.8 bits; conditional E-value: 2.7e-37 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeq 59 p+Q +aipl+ g dv+++a+ G+GKT +f+++ ++++ t + ++l++aPtre+a q Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989232 45 PVQIKAIPLARCGTDVIAQAKSGTGKTCVFAVASVERVVVTnPRPQVLVLAPTREIALQ 103 89********999*************************9998888************** PP HHHHHHHHTTT.SSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHC CS xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 60 tlnnlkqfkky.pklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnl 117 + + + q++ky +l v + igg++la ++l+ l+ ++ivv+ pgr+ +l++ gkl++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989232 104 IRDVIIQIGKYiNGLVVRAFIGGMPLA-EDLKALKSPCHIVVASPGRVRNLIEIGKLDV 161 ***********9999**********99.999999999********************** PP TTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-TH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 118 sqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpk 164 ++ ++VlDEad+l++ +f+dq+n + +l +++ qv++lSAT p Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989232 162 RNIAMFVLDEADKLMDDSFEDQVNWLHAAL--PAHKQVLALSATYPP 206 ****************************99..6669********984 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 76.5 0.1 4.2e-25 1e-21 3 78 .] 317 392 .. 315 392 .. 0.97 Alignments for each domain: == domain 1 score: 76.5 bits; conditional E-value: 4.2e-25 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlp 61 l+ g+++a++ g+l q er++ ++ ++ + +vlv+t+v +rGid+++vn+V+nfd p Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989232 317 LNSGGFPSAYIAGGLDQVERNAAIQATRDFRLRVLVSTDVTSRGIDVQHVNLVVNFDKP 375 67889****************************************************** PP SSHHHHHHHHTTSSTTT CS Helicase_C 62 rsvtsyiQriGRtgRag 78 +s ++y++r+GRtgR+g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989232 376 DSIETYLHRVGRTGRFG 392 ***************97 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 0.2 7.8e-07 0.0019 7 63 .. 54 112 .. 49 148 .. 0.78 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 7.8e-07 AAA_19 7 la.gnpllvvtGgPGtGKTttlaaiiaallaarekpgrsvllvaptgraakrlserl.. 62 ++ g +++ ++ GtGKT + a + ++++ p+ +vl++apt++ a ++++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989232 54 ARcGTDVIA-QAKSGTGKTCVFAVASVERVV-VTNPRPQVLVLAPTREIALQIRDVIiq 110 566788889.*********998888888883.2334558**************999865 PP AAA_19 63 .l 63 + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989232 111 iG 112 50 PP >> PBP_sp32 Proacrosin binding protein sp32 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.2 1.1e-05 0.027 82 189 .. 753 857 .. 736 884 .. 0.77 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 1.1e-05 PBP_sp32 82 hGlvPdGavcsnleyaswfesfcdfakyrcsnrvyyakrvrcsdpvsilspntlkevea 140 h P+ v + ++as f s+ + cs++vy a +r ++ si+s+ t+++ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989232 753 HSPLPNPDVGQDHDSASMFTSLMKTK--DCSKHVYPASLLRHINETSIVSSTTASNHQT 809 5667888899999********98754..6**************************9999 PP PBP_sp32 141 saevqsvtstlPiaehakvterqsfekeeerlsnnveellksslsldek 189 + +s+ st+ + + + + s++ + ll+ ls++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989232 810 PTHSPSTPSTSD-STIDGGGKQRGPDSLPSETSDDSQTLLEDQLSSESN 857 888888877776.333333344445556666666667777777666554 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.0 2.3e-05 0.057 9 102 .. 50 172 .. 44 190 .. 0.62 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 2.3e-05 AAA_30 9 aveavltsgdrvavvqGpAGtGKttv..lkalrealeaag.krviglAptgkaakvLee 64 a+ + + +d ++ q+ GtGKt v ++++++++ + +v++lApt + a ++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989232 50 AIPLARCGTD--VIAQAKSGTGKTCVfaVASVERVVVTNPrPQVLVLAPTREIALQIRD 106 5555544444..78899*******761155688899888769*************9998 PP AAA_30 65 elg.....iearTiasllerldkaeaegrke.......................ldakt 95 + i++ ++++++ ae+ ++ + +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989232 107 VIIqigkyINGLVVRAFIGGMPLAEDLKALKspchivvaspgrvrnlieigkldVRNIA 165 74322244444444444444444433333334555555555555555555553344444 PP AAA_30 96 llvvDEA 102 ++v+DEA Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989232 166 MFVLDEA 172 6666666 PP >> Terminase_6 Terminase-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.1 0.0 0.00019 0.47 7 46 .. 67 106 .. 66 183 .. 0.87 Alignments for each domain: == domain 1 score: 9.1 bits; conditional E-value: 0.00019 Terminase_6 7 qsGKTfalayellrhalakgprnqvilsaskaqlrneggl 46 + GKT ++a +++++ ++pr+qv++ a ++++++++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989232 67 GTGKTCVFAVASVERVVVTNPRPQVLVLAPTREIALQIRD 106 57*******************************9997665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (927 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 487 (0.0328366); expected 296.6 (0.02) Passed bias filter: 233 (0.0157103); expected 296.6 (0.02) Passed Vit filter: 25 (0.00168566); expected 14.8 (0.001) Passed Fwd filter: 9 (0.000606837); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.41u 0.33s 00:00:00.74 Elapsed: 00:00:01.93 # Mc/sec: 1253.77 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995504 [L=528] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-46 158.0 0.0 8.4e-46 155.5 0.0 1.9 2 DEAD DEAD/DEAH box helicase 9.8e-29 99.0 0.0 3.2e-28 97.4 0.0 1.9 1 Helicase_C Helicase conserved C-terminal domain 0.0018 18.1 0.0 0.0081 16.0 0.0 2.0 2 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.027 14.3 0.0 0.076 12.9 0.0 1.8 1 Sigma70_r3 Sigma-70 region 3 Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 155.5 0.0 2.3e-49 8.4e-46 1 168 [. 123 302 .. 123 303 .. 0.94 2 ? -0.0 0.0 0.14 5.2e+02 46 102 .. 353 408 .. 339 414 .. 0.58 Alignments for each domain: == domain 1 score: 155.5 bits; conditional E-value: 2.3e-49 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT...........EE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx...........xx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq...........ka 47 tp+Q++ai ++ +dv+++a+TGsGKT+afl+p+i i+l+ a Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995504 123 TPVQKHAIAAAKMMRDVMACAQTGSGKTAAFLLPMIAIMLSMdP-PsqpdprkpaapVA 180 79*******99999*************************99743.369*********** PP EEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 48 livaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrl 106 l++aPtreL+ q+++++++f ++++ ++++gg + q + +++g+di+v+Tpgrl Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995504 181 LVMAPTRELIVQIHDEARKFSYKTGIHPVVVYGGADPL-TQIREMSKGCDILVATPGRL 238 *********************99************966.888899899*********** PP HHHHHTTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTT..SEEEEEESS-T CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF DEAD 107 ddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkr..lqvivlSATlp 163 +d +++g+++l+++++lVlDEadr+l++gf++++++i+++++ + r +q++++SAT+p Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995504 239 KDFIQRGRITLKDIKFLVLDEADRMLDMGFEPDIREIVERCEMPPRdvRQTLMFSATFP 297 *******99*******************************8777767799********* PP HHHHH CS xxxxx RF DEAD 164 kdvkk 168 k++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995504 298 KEIQQ 302 99887 PP == domain 2 score: -0.0 bits; conditional E-value: 0.14 EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxx RF DEAD 46 kalivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvl....dngvdivv 100 k+l+ + t++ + +l++ ++++++i+g+ + +++ l ++++ +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995504 353 KVLVFVNTKAGCDRLWVSLEK----EGVKAVIIHGDRMQH-ERDDALkkfrKGTCPVLI 406 555555555555555555444....346788888866533.333334456888899999 PP EE CS xx RF DEAD 101 gT 102 +T Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995504 407 AT 408 88 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 97.4 0.0 8.6e-32 3.2e-28 2 78 .] 370 446 .. 369 446 .. 0.98 Alignments for each domain: == domain 1 score: 97.4 bits; conditional E-value: 8.6e-32 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSS CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl 60 lek+g+k++i+hg+ +q er++ l++f++g+++vl+at+va+rG+d+p v V+nfdl Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995504 370 SLEKEGVKAVIIHGDRMQHERDDALKKFRKGTCPVLIATDVAARGLDIPWVARVVNFDL 428 589******************************************************** PP SSSHHHHHHHHTTSSTTT CS Helicase_C 61 prsvtsyiQriGRtgRag 78 p++ +sy++riGRtgRag Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995504 429 PKDIDSYVHRIGRTGRAG 446 ****************97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.0 2.2e-06 0.0081 5 183 .. 123 297 .. 119 298 .. 0.71 2 ? -1.3 0.0 0.43 1.6e+03 51 92 .. 347 393 .. 338 402 .. 0.67 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 2.2e-06 -HHHHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S............ CS ResIII 5 rpyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar............ 51 p+Q++ai + + + ++ + TG+GKT + + +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995504 123 TPVQKHAIAAAKM-------MRDVMACAQTGSGKTAAFLLPMIAIMLsmdppsqpdprk 174 5666666666663.......356778899******9999644444445888999***** PP ....-EEEEESSHHHHHHHHHHGGGGTGG...GEEEESSS-B---SEEEEEHHHHH... CS ResIII 52 ....kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkee 106 +l+ +p++el+ q ++e +kf+ k ++v + + ++ + + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995504 175 paapVALVMAPTRELIVQIHDEARKFSYKTGIH----PVVVYGG-------ADPLTQIR 222 ***999*****************5555552222....2222222.......22222233 PP ...............................HTHHHHTTT-SEEEEETGGGTTSTT... CS ResIII 107 kkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkk.. 163 + +k ++i+++t +l+ ++++ + l+ ++++ DEa r+ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995504 223 EMSKGCDILVATPGRLKDFIQRG-----------RITLKDIKFLVLDEADRMLDMGFep 270 34567999********9998763...........3444556699999999999999888 PP .THHHHH......---SEEEEEESS-S CS ResIII 164 .yreile......fkkafllglTATpe 183 rei+e + l ++AT++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995504 271 dIREIVErcemppRDVRQTLMFSATFP 297 888888899988844555799999986 PP == domain 2 score: -1.3 bits; conditional E-value: 0.43 S.....-EEEEESSHHHHHHHHHHGGGGTGG...GEEEESSS-B--- CS ResIII 51 r.....kflflvprkelleqaleefkkfeskkiefekkniavakkdk 92 + k+l++v++k+ ++++ ++k+ k + + ++++ +d+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995504 347 QqevdnKVLVFVNTKAGCDRLWVSLEKEGVKAVIIHGDRMQHERDDA 393 23666799*****9998888888887776666666666666665555 PP >> Sigma70_r3 Sigma-70 region 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.0 2e-05 0.076 17 42 .. 266 291 .. 259 295 .. 0.90 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 2e-05 XXXXXXXXXXXXXXXXXXXXXXXXXX CS Sigma70_r3 17 lgRePtpeEiAeelgiseekvrevle 42 +g eP + Ei e++++++++vr++l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995504 266 MGFEPDIREIVERCEMPPRDVRQTLM 291 6779*******************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (528 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 448 (0.030207); expected 296.6 (0.02) Passed bias filter: 417 (0.0281168); expected 296.6 (0.02) Passed Vit filter: 46 (0.00310161); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.29u 0.48s 00:00:00.77 Elapsed: 00:00:03.07 # Mc/sec: 448.94 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 [L=784] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.5e-46 155.3 0.0 1.3e-43 148.3 0.0 2.3 2 DEAD DEAD/DEAH box helicase 3e-31 107.0 0.2 7.6e-31 105.8 0.1 1.7 1 Helicase_C Helicase conserved C-terminal domain 1.4e-06 26.9 0.0 0.00013 20.5 0.0 2.7 2 DUF1253 Protein of unknown function (DUF1253) 0.00021 21.1 0.0 0.0018 18.1 0.0 2.4 2 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.057 13.3 0.0 0.13 12.2 0.0 1.5 1 Helicase_C_2 Helicase C-terminal domain 1.3 8.7 46.2 0.045 13.4 16.7 2.4 2 DUF1777 Protein of unknown function (DUF1777) Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 148.3 0.0 5.5e-47 1.3e-43 2 169 .] 391 581 .. 390 581 .. 0.92 2 ! 4.6 0.0 0.0082 20 64 102 .. 645 686 .. 639 694 .. 0.82 Alignments for each domain: == domain 1 score: 148.3 bits; conditional E-value: 5.5e-47 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT........EEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx........xxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq........kaliva 51 piQ ++ip l+ +d++++aeTGsGKT+af+ p++ + + k + ali+a Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 391 PIQMQCIPIGLQRRDIIGVAETGSGKTAAFVFPMLVYISKLpKMTpanstegpYALILA 449 8**********************************99988755559************* PP SSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 52 PtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlv 110 PtreLa+q+ +++++f+ +++r+ ++ggv+++ +q l++g++i+++Tpgrl d + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 450 PTRELAQQIEDECTKFATCMGIRCYSVVGGVPIE-EQGFGLREGTEIIIATPGRLNDCL 507 ********************************99.999999999*************** PP HTTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCT......T.........SE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......x.........xx RF DEAD 111 stgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgk......r.........lq 154 +++ + l q++++VlDE+dr+l++gf++q+n+il ++ + + +q Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 508 ERRYIVLNQCNYVVLDECDRMLDMGFEPQVNTILDAMPSTNlkpenmDevdetkkvyRQ 566 **989*******************************977767666550556667787** PP EEEEESS-THHHHHH CS xxxxxxxxxxxxxxx RF DEAD 155 vivlSATlpkdvkkl 169 +i++SAT+p +v++l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 567 TIMFSATMPPNVERL 581 *********999975 PP == domain 2 score: 4.6 bits; conditional E-value: 0.0082 HHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 64 lkqfkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 l +++++ ++r+++++gg +++ ++++ l ++++d++v+T Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 645 LARYLEKEGIRATVLHGGRTQD-QRETALegfkSKKYDVLVAT 686 667888899**********966.4444556999899*****99 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 105.8 0.1 3.1e-34 7.6e-31 2 78 .] 648 724 .. 647 724 .. 0.98 Alignments for each domain: == domain 1 score: 105.8 bits; conditional E-value: 3.1e-34 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSS CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl 60 +lek+gi++++lhg+ +q++re le f+++k++vlvat+va+rGid+++vn+Vinfd+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 648 YLEKEGIRATVLHGGRTQDQRETALEGFKSKKYDVLVATDVAGRGIDIKGVNHVINFDM 706 79********************************************************* PP SSSHHHHHHHHTTSSTTT CS Helicase_C 61 prsvtsyiQriGRtgRag 78 p++ ++y +r+GRtgRag Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 707 PKNIEDYTHRVGRTGRAG 724 ****************97 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.0 0.43 1.1e+03 38 61 .. 443 466 .. 439 470 .. 0.82 2 ! 20.5 0.0 5.3e-08 0.00013 187 390 .. 536 717 .. 512 742 .. 0.84 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 0.43 DUF1253 38 pkvLillpfrniakevvdllikll 61 p Lil p+r+ a+++ d +k++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 443 PYALILAPTRELAQQIEDECTKFA 466 5679**********9988777765 PP == domain 2 score: 20.5 bits; conditional E-value: 5.3e-08 DUF1253 187 alnklpkkshdadisRvrkwvldgqaknyRQtiilssietpeinslfnsklaNlrgkvk 245 ++n ++ + +++++ ++ +d+ k yRQti++s+++ p++ l ++ l+N Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 536 QVNTILDAMPSTNLKPENMDEVDETKKVYRQTIMFSATMPPNVERLAKKYLRN------ 588 578888899999999999999****************************5555...... PP DUF1253 246 lkkkekkigvlekvvlkvrqvFerieaesilkeedarlkfFtknvlpkltkeskekgvl 304 + ig + ++v+ ++q e ++ke+++r n l+ l +++ e v+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 589 -PIVVQ-IGEVGRTVTTIKQRVE------FVKEQEKR------NRLKGLLRSGPEPPVM 633 .33344.5667777777777544......44555544......56788888999***** PP DUF1253 305 ifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkgrkkiLLvteRlhfy 363 +f++s + yl+ke i + ++ ++ + + a + Fk+++ +L+ t+ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 634 VFVSSKKGADVLARYLEKEGIRATVLHGGRTQDQRETALEGFKSKKYDVLVATDVAG-- 690 *******999*******************************************9775.. PP DUF1253 364 rRykikgvkkvifyslPefpefYseli 390 r + ikgv++vi + +P++ e Y+ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 691 RGIDIKGVNHVINFDMPKNIEDYTHRV 717 899****************99887655 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.7 1.3 3.2e+03 83 128 .. 54 99 .. 13 118 .. 0.63 2 ! 18.1 0.0 7.2e-07 0.0018 25 164 .. 403 554 .. 387 575 .. 0.65 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 1.3 EESSS-B---SEEEEEHHHHH......................... CS ResIII 83 kniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkalee 128 + +kk +++ e k++e+ k+ +k ++lt+ q+ a+++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 54 VTENAKKKTEPLSLEALLKKKTEQDKELTKPVFLTKTQREALAIQK 99 3444455555666666666666666666666666666665555554 PP == domain 2 score: 18.1 bits; conditional E-value: 7.2e-07 TSEEEEEESTTSTHHHHHHHHHHHH-S..............-EEEEESSHHHHHHHHHH CS ResIII 25 kkrglivmaTGtGKTlvaasliarlar..............kflflvprkelleqalee 69 ++ ++ v++TG+GKT ++ +++ +l+l+p++el +q ++e Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 403 RRDIIGVAETGSGKTAAFVFPMLVYISklpkmtpanstegpYALILAPTRELAQQIEDE 461 556667899******99885444444445669999999********************* PP GGGGTGG...GEEEESSS-B---SEEEEEHHHHH......................... CS ResIII 70 fkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkalee 128 +kf++ + + + +++ + ++++ + + +eii++t +l+ le+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 462 CTKFATC-MGIRCYSVV----------GGVPIEEQGFGLREGTEIIIATPGRLNDCLER 509 *655543.333233222..........22222223333346788999999999988765 PP .........HTHHHHTTT-SEEEEETGGGTTSTT.....................T CS ResIII 129 eeendeskseslealldefdviiiDEaHrlsakkk....................y 164 + l++ ++++ DE+ r+ ++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 510 -----------RYIVLNQCNYVVLDECDRMLDMGFepqvntildampstnlkpenM 554 ...........567788888999999888877776555555555555555554443 PP >> Helicase_C_2 Helicase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.0 5.1e-05 0.13 12 80 .. 632 698 .. 622 717 .. 0.84 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 5.1e-05 Helicase_C_2 12 vlvffpSyslleevverlkeeleskkievfeekeesrekvleeykeskgaillavcrgk 70 v+vf++S + + ++++l++e+ + ++ ++++re+ le +k++k +l+a+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 632 VMVFVSSKKGADVLARYLEKEGIRATVLHGGRTQDQRETALEGFKSKKYDVLVATD--V 688 89********************9655555555799********************9..9 PP Helicase_C_2 71 vseGidfsdd 80 Gid+++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 689 AGRGIDIKGV 698 999**99964 PP >> DUF1777 Protein of unknown function (DUF1777) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.8 9.8 0.14 3.4e+02 14 119 .. 3 112 .. 1 123 [. 0.38 2 ? 13.4 16.7 1.8e-05 0.045 19 85 .. 146 210 .. 135 266 .. 0.51 Alignments for each domain: == domain 1 score: 0.8 bits; conditional E-value: 0.14 DUF1777 14 keRseerkrrrgrsrdRdrreRereRsrsre.Rdr.arrrsRsrderrsrrsrSprrlk 70 k+R++++ +r ++Rd + +++rs e Rd + + +R + s s+S ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 3 KDRDNDSRKR----KERDDPD-LVSKQRSNEdRDGkKSKNERAVEDPASNGSKSNGVTE 56 3333333222....2222111.1122222222443122223333333344444444445 PP DUF1777 71 sgrersrsrsierrrdRkeerekkakep.......ekkrerqksvdgvkeikeedl 119 + +++ + s e ++k e++k+ +p + qk++ +v+e +++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 57 NAKKKTEPLSLEALLKKKTEQDKELTKPvfltktqREALAIQKREVAVTELRKKQV 112 55555555555555555666666665555543221111122333445555555544 PP == domain 2 score: 13.4 bits; conditional E-value: 1.8e-05 DUF1777 19 erkrrrgrsrdRdrreRereRsrsreRdrarrrsRsrderrsrrsrSprrlksgrersr 77 ++rr ++rdRdr++R+r+ +r+r+Rdr+ r+ +rd+ r + r r+ + + s+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 146 YKDRRDRDHRDRDRDHRDRD-HRDRDRDRRDSRDHYRDRDRDNKDRGGRD-RGAKGDSK 202 34444445555555555554.23444444334444444444444444333.11122222 PP DUF1777 78 srsierrr 85 + +++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001780 203 EGKVDKEK 210 22222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (784 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 887 (0.0598072); expected 296.6 (0.02) Passed bias filter: 334 (0.0225204); expected 296.6 (0.02) Passed Vit filter: 35 (0.00235992); expected 14.8 (0.001) Passed Fwd filter: 8 (0.000539411); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.37u 0.40s 00:00:00.77 Elapsed: 00:00:02.50 # Mc/sec: 818.60 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 [L=637] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-42 143.4 0.0 2.1e-19 69.6 0.0 3.0 3 DEAD DEAD/DEAH box helicase 2.4e-24 84.9 0.1 5.7e-24 83.7 0.1 1.7 1 Helicase_C Helicase conserved C-terminal domain 0.00016 21.5 0.0 0.00072 19.4 0.0 2.0 2 ResIII Type III restriction enzyme, res subunit 0.0031 15.9 0.5 0.33 9.2 0.0 3.3 3 DUF1253 Protein of unknown function (DUF1253) 0.0061 15.6 0.1 0.019 14.0 0.0 1.8 2 CMS1 U3-containing 90S pre-ribosomal complex subunit ------ inclusion threshold ------ 0.22 10.8 16.5 0.33 10.3 11.4 1.4 1 DUF605 Vta1 like Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 69.2 0.0 1.1e-22 2.7e-19 1 75 [. 125 207 .. 125 232 .. 0.83 2 ! 69.6 0.0 8.5e-23 2.1e-19 71 168 .. 341 437 .. 328 438 .. 0.89 3 ? 0.4 0.0 0.16 3.8e+02 60 102 .. 498 543 .. 495 559 .. 0.83 Alignments for each domain: == domain 1 score: 69.2 bits; conditional E-value: 1.1e-22 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT......EEEEEESS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq......kalivaPt 53 tpiQ ++ip +l+g+dv+++a+TGsGKTla+++p+++ l +t + ali+ P+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 125 TPIQMQTIPCVLSGRDVIANAPTGSGKTLAYALPLLKFLQTTTPAgpgvgpVALIIGPS 183 89***********************************997765458************* PP HHHHHHHHHHHHHHTTT..SSCCE CS xxxxxxxxxxxxxxxxx..xxxxx RF DEAD 54 reLaeqtlnnlkqfkky..pklrv 75 reL+eq+++++++f++ + ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 184 RELVEQIYSEVSKFIEAlkERSSA 207 ***************995333333 PP == domain 2 score: 69.6 bits; conditional E-value: 8.5e-23 SSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 71 pklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEad 129 ++++vl ++ggv+l ++ + +++gvd++v+Tpgrl+dl+++g l+l +v++lV+DEad Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 341 HQIKVLGVVGGVPLGTQVQPLVQKGVDVLVATPGRLLDLFERGALSLDRVSYLVMDEAD 399 6789999******996666666999********************************** PP HHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 130 rllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 r+l+ g++ ql++++ + +++ +q++++SATlp+ +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 400 RMLDLGMELQLRKVVGLASKY-ARQTLLFSATLPTALER 437 *****************8777.789*********88776 PP == domain 3 score: 0.4 bits; conditional E-value: 0.16 HHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 60 tlnnlkqfkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 +++++ q++k ++ v+ +++++++ + +v+ ++gvd++v+T Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 498 IVDKVVQLLKAEQFHVAGLHSDKSQP-YRFRVMkafkQGGVDVLVAT 543 78889999999999999999999955.5555666789999*****99 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.7 0.1 2.3e-27 5.7e-24 2 78 .] 505 581 .. 504 586 .. 0.98 Alignments for each domain: == domain 1 score: 83.7 bits; conditional E-value: 2.3e-27 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSS CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl 60 ll++++++va lh++ +q r ++++ f++g +vlvat+va+rGid+ dv++V+ +d+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 505 LLKAEQFHVAGLHSDKSQPYRFRVMKAFKQGGVDVLVATDVASRGIDVSDVTHVVLYDM 563 789999***************************************************** PP SSSHHHHHHHHTTSSTTT CS Helicase_C 61 prsvtsyiQriGRtgRag 78 p++ ++y++riGRtgRag Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 564 PDTIEDYVHRIGRTGRAG 581 ****************97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.4 0.0 2.9e-07 0.00072 27 84 .. 140 208 .. 124 256 .. 0.67 2 ? -1.9 0.0 1 2.5e+03 143 181 .. 386 430 .. 372 432 .. 0.66 Alignments for each domain: == domain 1 score: 19.4 bits; conditional E-value: 2.9e-07 EEEEEESTTSTHHHHHHHHHHHH-S...........-EEEEESSHHHHHHHHHHGGGGT CS ResIII 27 rglivmaTGtGKTlvaasliarlar...........kflflvprkelleqaleefkkfe 74 ++ +++TG+GKTl +a ++++++ +l++ p++el+eq + e kf Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 140 DVIANAPTGSGKTLAYALPLLKFLQtttpagpgvgpVALIIGPSRELVEQIYSEVSKFI 198 567899***********88888888999*******9999999***********994444 PP GG...GEEEE CS ResIII 75 skkiefekkn 84 ++ +e ++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 199 EALKERSSAS 208 3333322222 PP == domain 2 score: -1.9 bits; conditional E-value: 1 HTTT-SEEEEETGGGTTSTT....THHHHH......---SEEEEEESS CS ResIII 143 lldefdviiiDEaHrlsakkk...yreile......fkkafllglTAT 181 +ld+ ++++DEa r+ + + r + + l ++AT Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 386 SLDRVSYLVMDEADRMLDLGMelqLR---KvvglasKYARQTLLFSAT 430 56777899999998888777633333...3444554223334777777 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.2 0.76 1.9e+03 55 86 .. 44 74 .. 17 86 .. 0.57 2 ? -0.7 0.0 0.14 3.5e+02 39 112 .. 176 247 .. 174 249 .. 0.78 3 ! 9.2 0.0 0.00013 0.33 294 387 .. 480 571 .. 411 588 .. 0.83 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 0.76 DUF1253 55 dlliklleaekqvenkkrFeeefdlteeekke 86 + l k l+ k++ +++ F+e++ +++ + ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 44 EPLRKKLKR-KSTGKEDNFMESYYIEAPDVSA 74 334444444.5555666666666655555555 PP == domain 2 score: -0.7 bits; conditional E-value: 0.14 DUF1253 39 kvLillpfrniakevvdlliklleaekqvenkkrFeeefdlteeekkeeeekalkkkkp 97 Li+ p r+ ++ + + k++ea k+ + + F+++ +++ +++ ++++ +++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 176 VALIIGPSRELVEQIYSEVSKFIEALKERSSASLFSSSV--PNHYSSALQSHSSSQSHS 232 568999999999999999999999988888888888876..677777777777788888 PP DUF1253 98 edyralFkGnndDeF 112 +++ al n+++ F Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 233 NSFAALSDMNSQQYF 247 888888887877777 PP == domain 3 score: 9.2 bits; conditional E-value: 0.00013 DUF1253 294 ltkeskekgvlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkgrkk 352 l + +++ vlif ++ ++lk+e++ a+++ s+ r k+Fk+g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 480 LLRGTERPPVLIFCNMTHIVDKVVQLLKAEQFHVAGLHSDKSQPYRFRVMKAFKQGGVD 538 33366677788888777777799999***********9999999999************ PP DUF1253 353 iLLvteRlhfyrRykikgvkkvifyslPefpefYs 387 +L+ t+ + r + + +v++v++y +P+ e Y Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 539 VLVATDVAS--RGIDVSDVTHVVLYDMPDTIEDYV 571 *****9775..899**************9877665 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.0 0.0 7.7e-06 0.019 170 209 .. 358 397 .. 352 401 .. 0.86 2 ? -3.8 0.0 2.1 5.1e+03 121 144 .. 531 554 .. 526 560 .. 0.74 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 7.7e-06 CMS1 170 itylkksrigiavGtpgRiadLleeeslsvdeLkrivlDa 209 ++ l ++ + + v tpgR++dL+e ++ls+d++ ++v+D Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 358 VQPLVQKGVDVLVATPGRLLDLFERGALSLDRVSYLVMDE 397 5566667788999*************************96 PP == domain 2 score: -3.8 bits; conditional E-value: 2.1 CMS1 121 aksngsPhtlvltlaalRaaDlar 144 a ++g ++lv t a R +D++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 531 AFKQGGVDVLVATDVASRGIDVSD 554 455677789999999999999875 PP >> DUF605 Vta1 like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 11.4 0.00013 0.33 174 302 .. 205 332 .. 19 361 .. 0.61 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00013 ......................XXXXXXXXXXX.XXXX..XXXXXXXXXXX.XXXXXXX CS DUF605 174 aqesldssslpgeassasaspksaeesseslvs.ppls..dsdsstpglda.deasasp 228 ++ sl sss+p+ ssa +s +s++++s+s+ ++++ ++ +s++ l + + +++p Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 205 SSASLFSSSVPNHYSSALQSHSSSQSHSNSFAAlSDMNsqQYFNSYQPLYQlPPMPQPP 263 34444445555555555544444444444443311222232222222222102222223 PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........................... CS DUF605 229 seapssqpgvpsfpsppeseasnkdsqlPsaPtyaqknssssqsvfPpsseeeetssss 287 +++p + +++p+ p p + + +++P +P q++s+ + + +Pp+ ++ e+++s Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 264 EPPPLHLHPPPPPPPPLYGHHT--MVPPPHPP---QSASPPPPPPPPPPPPPAEPPMSW 317 3333333333333222222221..22222222...111111111111111111111111 PP ............... CS DUF605 288 ppsteapssppvqap 302 ++ ++ +s++ q+p Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020186 318 YSYPSGMPSSSFQQP 332 222222222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (637 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 756 (0.0509743); expected 296.6 (0.02) Passed bias filter: 580 (0.0391073); expected 296.6 (0.02) Passed Vit filter: 71 (0.00478727); expected 14.8 (0.001) Passed Fwd filter: 13 (0.000876542); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.39u 0.56s 00:00:00.95 Elapsed: 00:00:03.52 # Mc/sec: 472.38 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 [L=684] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-40 136.5 0.0 1.3e-39 135.4 0.0 1.6 1 DEAD DEAD/DEAH box helicase 3.5e-25 87.6 0.0 1.3e-24 85.8 0.0 2.0 1 Helicase_C Helicase conserved C-terminal domain 5e-06 26.4 0.0 1.7e-05 24.7 0.0 2.0 2 GUCT GUCT (NUC152) domain 1.8e-05 24.6 0.8 7.3e-05 22.6 0.0 2.2 2 ResIII Type III restriction enzyme, res subunit 0.0019 16.5 0.1 0.0046 15.3 0.0 1.5 2 Adaptin_N Adaptin N terminal region ------ inclusion threshold ------ 0.063 11.6 0.0 0.097 11.0 0.0 1.2 1 ILVD_EDD Dehydratase family 0.091 12.5 0.2 0.86 9.3 0.0 2.7 2 AAA_19 Part of AAA domain 0.29 9.5 15.0 0.42 9.0 10.4 1.1 1 Daxx Daxx Family 0.3 10.9 12.1 0.44 10.3 8.4 1.2 1 TFIIA Transcription factor IIA, alpha/beta subunit 1 8.5 10.5 1.6 7.9 7.3 1.1 1 NOA36 NOA36 protein 5.3 5.9 9.5 9.3 5.1 6.6 1.3 1 TRAP_alpha Translocon-associated protein (TRAP), alpha Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 135.4 0.0 9.3e-43 1.3e-39 1 165 [. 202 373 .. 202 377 .. 0.94 Alignments for each domain: == domain 1 score: 135.4 bits; conditional E-value: 9.3e-43 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT...........EEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq...........kal 48 tpiQae+++li++g+d++++++TG+GKTlaf++p+++++ ++ + ++l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 202 TPIQAETYDLIYDGSDIIGKSRTGTGKTLAFALPILERFRAEE-EgsgrsrrgrapRVL 259 89*************************************8863.247************ PP EEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 49 ivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrld 107 ++aPtreLa+q ++++ ++k + v++ +gg++ q++ l+ng d++v+Tpgr++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 260 VLAPTRELAKQDSREFELLGKG-FVDVACFYGGTSYI-PQEKALSNGLDVLVATPGRII 316 ********************98.69**********77.99999*9************** PP HHHHTTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 108 dlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkd 165 dl ++g l+lsq+++ +lDEad++l gf +++++i ++ + ++q++++SAT+p Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 317 DLANQGVLDLSQIEVAILDEADEMLRVGFAEDVEKIFEMFSTT-DRQTMMFSATIPPW 373 *****999******************************98555.99********9965 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.8 0.0 9.7e-28 1.3e-24 9 78 .] 450 519 .. 446 519 .. 0.98 Alignments for each domain: == domain 1 score: 85.8 bits; conditional E-value: 9.7e-28 -EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHH CS Helicase_C 9 kvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsy 67 ++a+lhg++ q +re l++f++gk++vlvat+va+rG+d+p+v++Vi++ lp+ +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 450 ECAVLHGDIAQYQRELALTRFREGKFRVLVATDVAARGLDIPAVDLVIQYQLPWEAETF 508 589******************************************************** PP HHHHTTSSTTT CS Helicase_C 68 iQriGRtgRag 78 i+r+GRtgRag Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 509 IHRSGRTGRAG 519 *********97 PP >> GUCT GUCT (NUC152) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.3 0.0 6.5 8.8e+03 44 64 .. 347 366 .. 339 367 .. 0.78 2 ! 24.7 0.0 1.2e-08 1.7e-05 1 80 [. 606 682 .. 606 684 .] 0.92 Alignments for each domain: == domain 1 score: -3.3 bits; conditional E-value: 6.5 HHHHTT-EEEEE-TTSSEEEE CS GUCT 44 eeaveeikgltlladekGavF 64 e ve+i +++ + d + +F Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 347 E-DVEKIFEMFSTTDRQTMMF 366 4.6789999999999999988 PP == domain 2 score: 24.7 bits; conditional E-value: 1.2e-08 S-S-------------EEEEEEE-SS--SSTHHHHHHHHHHS-HHHHTT-EEEEE-TTS CS GUCT 1 GyteikqRSLltseegyvTllLeaskeistlsyvwkvlkrfLseeaveeikgltllade 59 G +++++RSLlt+ +g + +l++ + + v ++ r ++e a ++ ++ l++d Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 606 GVKSVTTRSLLTGISGRTMVLIKDYYGRVSEGAVKAIIGRVFPE-ARAHLGNIELVQD- 662 77899************9999999999999999999*******9.8899*******98. PP SEEEEEEEHHHHHHHHHH--S CS GUCT 60 kGavFDvpeeeaeellaksqe 80 GavFD+p++ a++l + +qe Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 663 -GAVFDLPTDMAKQLAELPQE 682 .9************9998776 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.8 1.8 2.4e+03 97 120 .. 92 115 .. 60 154 .. 0.48 2 ! 22.6 0.0 5.4e-08 7.3e-05 28 72 .. 218 277 .. 184 303 .. 0.82 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 1.8 EEHHHHH................. CS ResIII 97 eqkkskdkeekkkkdkeiilttiq 120 +++++ +++e ++ ++e+i+ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 92 NEGEEYEESEDEEWEEELIVGEVE 115 333333333333334444444433 PP == domain 2 score: 22.6 bits; conditional E-value: 5.4e-08 EEEEESTTSTHHHHHHHHHHHH-S...............-EEEEESSHHHHHHHHHHGG CS ResIII 28 glivmaTGtGKTlvaasliarlar...............kflflvprkelleqaleefk 71 ++ + TGtGKTl a i++ +r ++l+l+p++el +q +ef+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 218 IIGKSRTGTGKTLAFALPILERFRaeeegsgrsrrgrapRVLVLAPTRELAKQDSREFE 276 566788**********99***************************************95 PP G CS ResIII 72 k 72 Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 277 L 277 4 PP >> Adaptin_N Adaptin N terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.0 0.93 1.3e+03 453 486 .. 415 448 .. 405 461 .. 0.79 2 ! 15.3 0.0 3.4e-06 0.0046 127 179 .. 556 607 .. 549 633 .. 0.85 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 0.93 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS Adaptin_N 453 sdllrslaekfvlesekvklailtalvKlsltsp 486 +d+lr+l++++ +e ++v+ + + +ls+ p Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 415 ADVLRDLISVYAQERAIVFTHTKKDADELSVHLP 448 6899999999999999998877777777666665 PP == domain 2 score: 15.3 bits; conditional E-value: 3.4e-06 SHHHHHHHHHHHHHCCCCHHHHHHCC.HHHHHHHTT-SSHHHHHHHHHHHHHH CS Adaptin_N 127 spyVrkkAalailklykkdpdlvrkqlveeikellsdkdpgVvlaAvalleei 179 + +Vr++A++a+ kl +++pd++ + e ++ll++++++ ++aA+a++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 556 EEVVRSQAIMASHKLSEVSPDVLTY-FEEAAQSLLNENSTRAMAAALAVISGV 607 568*******************987.59**********************988 PP >> ILVD_EDD Dehydratase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 7.2e-05 0.097 421 472 .. 614 668 .. 606 683 .. 0.80 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 7.2e-05 ILVD_EDD 421 alagkglgkkvalitD..GRfSGaskglvighvsPEAaa.gGpialvrdgDiiei 472 l g++++li D GR+S ++ ++ig v PEA a G+i lv+dg + + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 614 SLLTGISGRTMVLIKDyyGRVSEGAVKAIIGRVFPEARAhLGNIELVQDGAVFDL 668 45544557999****999*******************6637*********76655 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 0.0 0.00064 0.86 19 57 .. 224 270 .. 212 286 .. 0.81 2 ? -1.1 0.0 1.2 1.6e+03 35 62 .. 415 447 .. 398 458 .. 0.63 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.00064 AAA_19 19 PGtGKTttlaaiiaall........aarekp.grsvllvaptgraakr 57 GtGKT + a i +++ ++r+ + +vl++apt++ ak+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 224 TGTGKTLAFALPILERFraeeegsgRSRRGRaP-RVLVLAPTRELAKQ 270 59****888888999999999999954445535.8*********9997 PP == domain 2 score: -1.1 bits; conditional E-value: 1.2 AAA_19 35 l.........aarekpgrsvllvaptgraakrlserl 62 + +a ++ ++ + t + a++ls l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 415 AdvlrdlisvYA----QERAIVFTHTKKDADELSVHL 447 044444445544....788999999999999997666 PP >> Daxx Daxx Family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 10.4 0.00031 0.42 445 517 .. 83 156 .. 57 196 .. 0.57 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00031 Daxx 445 aekeedeeddekeeedkseeeeeeeeeeeeeeeadnee.eedleassegegddeeeeed 502 ++e+d+e++e ee ++se+ee eee e+e d e ee +e+ +++ +ddeeee+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 83 IQSENDDEENEGEEYEESEDEEWEEELIVGEVEDDIEAeEEGIEEEEDDIEDDEEEEHA 141 33333333333333333333333333333444444333033455555555555555555 PP Daxx 503 eekndevakgirvse 517 + ++d+ +kgi +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 142 DYNEDDETKGIVIPH 156 557888888986554 PP >> TFIIA Transcription factor IIA, alpha/beta subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 8.4 0.00033 0.44 277 330 .. 87 146 .. 36 154 .. 0.63 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00033 XXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS TFIIA 277 gdtsdeeesdedeeldeDd.........edldkeeedegvieedpddseDDvsdedeed 326 d++++e+++++e +eD+ e +d e +e++iee+ dd eDD+ e++ d Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 87 NDDEENEGEEYEE--SEDEeweeelivgEVEDDIEAEEEGIEEEEDDIEDDEE-EEHAD 142 3444444444444..44444466667665555556669999999999999974.44444 PP XX-- CS TFIIA 327 lfdt 330 ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 143 YNED 146 3333 PP >> NOA36 NOA36 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.9 7.3 0.0012 1.6 220 305 .. 65 147 .. 52 152 .. 0.73 Alignments for each domain: == domain 1 score: 7.9 bits; conditional E-value: 0.0012 NOA36 220 setkdlslstrsykfgrqtrgeesddeegygaykknlssdkygdaksvnygyesdddee 278 +e+ ++s+ + + +++ ++e+ d+e++ ++y ++ + + + g+ dd e Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 65 RESSNFSICALVQVPSKEIQSENDDEENEGEEYEESEDEEWEEE---LIVGEVEDDIEA 120 67789999999999999999999888888888887744333333...456777788888 PP NOA36 279 esaedydeeededddddeeedetsene 305 e+++ ++ee+d +dd++ee+ + +e++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 121 EEEGIEEEEDDIEDDEEEEHADYNEDD 147 888888888887777777766655443 PP >> TRAP_alpha Translocon-associated protein (TRAP), alpha subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 6.6 0.0069 9.3 9 80 .. 72 145 .. 66 171 .. 0.60 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.0069 TRAP_alpha 9 lllllalpavlllvgavkklaa.saqdltedeeaeddvvdedeedeaeveedekteaee 66 + +l+ +p+ + ++ ++ + + + +edee e++++ + ed+ e ee+ +e e+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 72 ICALVQVPSKEIQSENDDEENEgEEYEESEDEEWEEELIVGEVEDDIEAEEEGIEEEED 130 55677777777755544444330345778899999999999999999998885544322 PP TRAP_alpha 67 e.edeeeagevkasp 80 + ed+ee+++ + + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194014450 131 DiEDDEEEEHADYNE 145 212222222333333 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (684 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 738 (0.0497606); expected 296.6 (0.02) Passed bias filter: 409 (0.0275774); expected 296.6 (0.02) Passed Vit filter: 84 (0.00566381); expected 14.8 (0.001) Passed Fwd filter: 25 (0.00168566); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 0.41u 0.50s 00:00:00.90 Elapsed: 00:00:02.54 # Mc/sec: 702.94 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194024042 [L=2345] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-18 67.4 0.0 2.8e-18 66.3 0.0 1.5 1 ResIII Type III restriction enzyme, res subunit 2.1e-18 65.9 0.5 9.8e-18 63.8 0.1 2.4 2 Helicase_C Helicase conserved C-terminal domain 2.6e-17 62.8 0.0 6.6e-17 61.5 0.0 1.7 1 DEAD DEAD/DEAH box helicase Domain annotation for each model (and alignments): >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.3 0.0 5.7e-22 2.8e-18 7 182 .. 46 200 .. 40 202 .. 0.83 Alignments for each domain: == domain 1 score: 66.3 bits; conditional E-value: 5.7e-22 HHHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSH CS ResIII 7 yQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar.....kflflvprk 60 yQ +++ l +k+ l+ ++TG GKT++aa ++++++r k++f +p+k Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194024042 46 YQLSICKEGL--------FKNTLVSLPTGLGKTFIAAVIMYNYYRwfpagKIVFMAPTK 96 4444444444........7999************************************* PP HHHHHHHHHGGGGTGG...GEEEESSS-B---SEEEEEHHHHH................ CS ResIII 61 elleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiiltti 119 +l++q +++ +i + + ++++ ++++s +k+++ ++k+++++t Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194024042 97 SLVSQQMQAC------------YKITGIPQCDTVELSGDVSISKRGELWSTKRMLFATP 143 *******998............23344445566788999999999999*********** PP ..................HTHHHHTTT-SEEEEETGGGTTSTT.THHHHH.......-- CS ResIII 120 qklhkaleeeeendeskseslealldefdviiiDEaHrlsakkkyreile.......fk 171 q++ +++++ + + ++++DEaH+++ ++ + ++++ f Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194024042 144 QSIANDIQR-----------NTCPVTSIVCVVVDEAHKATGNHANCQVVReiaranrF- 190 ******986...........445666788***************88888888877553. PP -SEEEEEESS- CS ResIII 172 kafllglTATp 182 +l lTATp Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194024042 191 -FRILALTATP 200 .347******9 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 0.0 1.1 5.4e+03 46 60 .. 201 215 .. 197 234 .. 0.68 2 ! 63.8 0.1 2e-21 9.8e-18 13 77 .. 441 504 .. 421 505 .. 0.92 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 1.1 SSTSTTEEEEEESSS CS Helicase_C 46 GidlpdvnvVinfdl 60 G dl++v+ Vin l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194024042 201 GSDLNGVQAVINNLL 215 88*********9665 PP == domain 2 score: 63.8 bits; conditional E-value: 2e-21 ESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHH CS Helicase_C 13 lhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQri 71 + g l+ +e+ ++l++f++g+++ lv+t+v+e+G+d+ +v++++ fd+ s+t +iQr+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194024042 441 VKG-LNRQEQMDVLQKFRDGECNTLVCTSVGEEGLDIGEVDLIVCFDALSSPTRMIQRM 498 444.999**************************************************** PP TTSSTT CS Helicase_C 72 GRtgRa 77 GRtgR Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194024042 499 GRTGRK 504 *****6 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.5 0.0 1.3e-20 6.6e-17 5 166 .. 48 204 .. 43 207 .. 0.80 Alignments for each domain: == domain 1 score: 61.5 bits; conditional E-value: 1.3e-20 HHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF DEAD 5 aeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtln 62 ++ ++ l +++lv+ +TG GKT ++++ + + ++ k++++aPt++L+ q+++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194024042 48 LSICKEGL-FKNTLVSLPTGLGKTFIAAVIMYN-YYRWfPAGKIVFMAPTKSLVSQQMQ 104 55555555.389****************98876.55655677***************** PP HHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 63 nlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvr 121 + +++ p++ ++ ++g+v+++++ + + + +++ +Tp+++ + +++++ + ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194024042 105 ACYKITGIPQCDTVELSGDVSISKRGE-LWS-TKRMLFATPQSIANDIQRNTCPVTSIV 161 *********************884444.333.479**************9888999999 PP EEEEETHHHHHSTTTHHHHHHHHHHSHHCTT.SEEEEEESS-THHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF DEAD 122 llVlDEadrllsqgfsdqlnqilqilcdgkr.lqvivlSATlpkdv 166 ++V+DEa++ + q+ ++ +++++r +++++l+AT+ +d+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194024042 162 CVVVDEAHKATGNHANCQV---VREIARANRfFRILALTATPGSDL 204 ************6544433...333333334389*******98776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2345 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 668 (0.0450408); expected 296.6 (0.02) Passed bias filter: 196 (0.0132156); expected 296.6 (0.02) Passed Vit filter: 31 (0.00209022); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.82u 0.34s 00:00:01.15 Elapsed: 00:00:01.44 # Mc/sec: 4250.85 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001198 [L=405] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-38 131.9 1.4 4.1e-38 130.5 0.8 1.8 2 DEAD DEAD/DEAH box helicase 3.7e-29 100.4 0.1 2e-27 94.8 0.0 2.6 3 Helicase_C Helicase conserved C-terminal domain 0.002 17.2 0.1 0.0035 16.4 0.1 1.5 1 CMS1 U3-containing 90S pre-ribosomal complex subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 130.5 0.8 8.3e-42 4.1e-38 2 168 .. 50 217 .. 49 218 .. 0.96 2 ? -1.3 0.0 0.25 1.3e+03 63 102 .. 282 324 .. 278 329 .. 0.72 Alignments for each domain: == domain 1 score: 130.5 bits; conditional E-value: 8.3e-42 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeq 59 ++Q++++p+ g++v+++a+ G+GKT++f+i ++q++ + kd a+iv treLa+q Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001198 50 EVQSRCLPHSTFGKSVICQAKSGMGKTAVFVISLLQQIDPEsKDVAAIIVGHTRELAQQ 108 68******99999****************************9999************** PP HHHHHHHHTTT..SSCCEEEETTTSEHHHHHHHHH.TT.-SEEEEEHHHHHHHHHTTSS CS xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF DEAD 60 tlnnlkqfkky..pklrvlliiggvalardqlsvl.dngvdivvgTpgrlddlvstgkl 115 + +++++f+ + p+++vl +ig+v+++ ql++l + +++ivvgTpgrl++l+ gkl Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001198 109 INSEIERFIAKrlPGIKVLTLIGKVDKE-TQLKQLrELQPQIVVGTPGRLHELIMGGKL 166 **************************77.9999999889******************** PP HCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 116 nlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 ++s+v+ +V+DE+d++l+++++ + ++i +++ +k+ qv++++ATlp+++k+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001198 167 DVSKVSHFVIDECDQVLQSDMRIKTQEIFMRC--PKKKQVMLFTATLPQEAKD 217 ******************99999******998..7789**********98876 PP == domain 2 score: -1.3 bits; conditional E-value: 0.25 HHHHHTTTSSCCEEEETTTSEHHHHHHHHH.....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxx RF DEAD 63 nlkqfkkypklrvlliiggvalardqlsvl.....dngvdivvgT 102 +l++f+ ++++ i g+ a +dq++++ ++++i+v+T Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001198 282 TLSKFLAELNFPNDYINGNLA--QDQRTKIfnefkAGKIRILVAT 324 566777777777777888777..3555555578888889999998 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 0.0 0.025 1.3e+02 4 30 .. 120 146 .. 118 155 .. 0.82 2 ? -2.6 0.0 1 5e+03 17 32 .. 183 198 .. 166 210 .. 0.56 3 ! 94.8 0.0 4e-31 2e-27 1 78 [] 285 362 .. 285 362 .. 0.97 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 0.025 HHTTS-EEEESTTSTHHHHHHHHHHHH CS Helicase_C 4 ekkgikvailhgelpqnereeileqfn 30 + +gikv+ l g+ ++ +++ l++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001198 120 RLPGIKVLTLIGKVDKETQLKQLRELQ 146 679*********999999988887765 PP == domain 2 score: -2.6 bits; conditional E-value: 1 STHHHHHHHHHHHHTT CS Helicase_C 17 lpqnereeileqfnag 32 l+++ r ++ e f + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001198 183 LQSDMRIKTQEIFMRC 198 4445555555555444 PP == domain 3 score: 94.8 bits; conditional E-value: 4e-31 HHHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESS CS Helicase_C 1 lllekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfd 59 ++l + +++ +++g+l q++r++i+++f+agk ++lvat+ ++rGid+++vnvVinfd Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001198 285 KFLAELNFPNDYINGNLAQDQRTKIFNEFKAGKIRILVATDLMGRGIDVEHVNVVINFD 343 5888999999************************************************* PP SSSSHHHHHHHHTTSSTTT CS Helicase_C 60 lprsvtsyiQriGRtgRag 78 ++ s+++y++r+GR+gR+g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001198 344 MSPSPDQYLHRVGRAGRFG 362 *****************97 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.1 7.1e-07 0.0035 167 209 .. 136 178 .. 87 207 .. 0.86 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 7.1e-07 CMS1 167 kesitylkksrigiavGtpgRiadLleeeslsvdeLkrivlDa 209 + +++ l++ + i vGtpgR+ +L+ + l v+++ + v+D Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194001198 136 ETQLKQLRELQPQIVVGTPGRLHELIMGGKLDVSKVSHFVIDE 178 6678888999999****************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (405 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 606 (0.0408604); expected 296.6 (0.02) Passed bias filter: 474 (0.0319601); expected 296.6 (0.02) Passed Vit filter: 33 (0.00222507); expected 14.8 (0.001) Passed Fwd filter: 3 (0.000202279); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.25u 0.50s 00:00:00.75 Elapsed: 00:00:02.74 # Mc/sec: 385.83 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 [L=977] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-20 74.0 0.0 8.4e-18 64.8 0.0 3.1 3 Ribonuclease_3 Ribonuclease III domain 1.9e-19 69.9 0.0 3.8e-19 68.8 0.0 1.6 1 Ribonucleas_3_3 Ribonuclease-III-like 1.1e-13 51.5 0.0 1.1e-13 51.5 0.0 3.6 3 Acyl-CoA_dh_2 Acyl-CoA dehydrogenase, C-terminal domain 1.7e-09 38.2 0.2 1.7e-09 38.2 0.1 2.5 2 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain 2.5e-06 27.6 0.0 6.1e-06 26.4 0.0 1.6 1 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain 2.4e-05 24.8 0.2 9.4e-05 22.9 0.0 2.1 2 dsrm Double-stranded RNA binding motif 0.0055 16.1 0.1 0.019 14.4 0.0 1.9 2 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain ------ inclusion threshold ------ 0.087 12.4 4.4 0.14 11.7 3.1 1.3 1 Sigma70_ner Sigma-70, non-essential region Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.8 0.0 4.5e-21 8.4e-18 1 114 [] 323 412 .. 323 412 .. 0.89 2 ? -2.5 0.0 3.6 6.7e+03 62 80 .. 434 462 .. 420 519 .. 0.64 3 ? 5.6 0.0 0.011 21 14 45 .. 886 917 .. 878 948 .. 0.77 Alignments for each domain: == domain 1 score: 64.8 bits; conditional E-value: 4.5e-21 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBH CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylre 59 erLef+GDav++l+i ++l++ p ++eg++s+lrs lv++ +ar ++lg+ ++l++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 323 ERLEFIGDAVFSLLIADHLYRSLPYADEGEISRLRSHLVQASSCARYVESLGIANHLQV 381 8********************************************************96 PP HHHHHSTT--TSSSSS.SC...............TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 60 sefdppknwlplnkdlangkgrqsisydlkeqsiadkvladvvEAliGaiyldsg 114 +++ + +++ +ad++EA++Gaiyldsg Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 382 VSSKRGPS------------------------TPNRHLMADLFEAVLGAIYLDSG 412 33322222........................23479****************98 PP == domain 2 score: -2.5 bits; conditional E-value: 3.6 HHHSTT--TSSSSS.SC............ CS Ribonuclease_3 62 fdppknwlplnkdlangk..........g 80 pp+nw+ +++d a++k g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 434 LSPPRNWKGILQDVAQKKyrevpryedlG 462 47889999888888888844444444440 PP == domain 3 score: 5.6 bits; conditional E-value: 0.011 HHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHH CS Ribonuclease_3 14 aittylfetypdlhegklsklrsklvsnenla 45 + t +e+ypdlh + ls l+s++v+++n + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 886 YQATDWWERYPDLHDQLLSPLVSAKVTSQNNS 917 55677889******************666544 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 68.8 0.0 2.1e-22 3.8e-19 1 125 [. 292 426 .. 292 429 .. 0.81 Alignments for each domain: == domain 1 score: 68.8 bits; conditional E-value: 2.1e-22 Ribonucleas_3_3 1 deelllqaltHkSyan..grkgy.......NerLefLGdavLelvvseyllekakk.de 49 d++ll a++H+S n g +++ NerLef+Gdav +l+++++l+++ + de Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 292 DKHLLALAFVHSSSGNntGLRNHplkpmldNERLEFIGDAVFSLLIADHLYRSLPYaDE 350 789***********7633334434445566***********************666378 PP Ribonucleas_3_3 50 geltkklaslvseeslaeiakelgLgkvlrlrkgeeetessgrekvladaleAliGAiy 108 ge ++ ++ lv+ s+a+ + lg+ ++l++ +++ + s+ +++ +ad++eA++GAiy Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 351 GEISRLRSHLVQASSCARYVESLGIANHLQVVSSK-RGPSTPNRHLMADLFEAVLGAIY 408 888999999**********************6644.44455577899************ PP Ribonucleas_3_3 109 ldkG.aeeakefveekil 125 ld+G +++a+ f+ +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 409 LDSGgLATAEWFIFHHLS 426 *97526778888877665 PP >> Acyl-CoA_dh_2 Acyl-CoA dehydrogenase, C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.8 3.2 0.88 1.6e+03 24 81 .. 490 546 .. 479 556 .. 0.63 2 ? -0.3 0.4 0.61 1.1e+03 91 117 .. 623 649 .. 568 651 .. 0.56 3 ! 51.5 0.0 6e-17 1.1e-13 4 133 .. 825 956 .. 823 957 .. 0.94 Alignments for each domain: == domain 1 score: -0.8 bits; conditional E-value: 0.88 T-B-TTT-SB-TT-HHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHTT----HHHHH CS Acyl-CoA_dh_2 24 ervraaggaklaedpatqlrlAeaaa.eldaAralleraaerlealadrgaevtpeera 81 +r ++ a++a + ++++l++ a + ++A+a++++ aer a+ d+ +e +++er+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 490 GRGVSKKEAQQAAARSALIALGHLADvAPAEAEAAAREEAER--AVDDEEDEEEESERE 546 444456777777888888888886641456677777777777..334444443444444 PP == domain 2 score: -0.3 bits; conditional E-value: 0.61 HHHHHHHHHHHHTTS-GGGGBTT-HHH CS Acyl-CoA_dh_2 91 velavaavdrlfeaaGgsalfkesplq 117 + a aav++l e G++al+ + +lq Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 623 LSEACAAVEALAEGDGSTALSLSMHLQ 649 344556778888888888887777777 PP == domain 3 score: 51.5 bits; conditional E-value: 6e-17 HHHHHHHHHHHHHHHHHHHTT-B-......TTT-SB-TT-HHHHHHHHHHHHHHHHHHH CS Acyl-CoA_dh_2 4 aavalGaargalaafierarervr......aaggaklaedpatqlrlAeaaaeldaAra 56 + v lG+a++a+++ ++ erv +++ + ae ++++l++a+ l++ ra Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 825 SGVHLGIAKSAIRCTARYVSERVAaltnrrDTDINGFAEYDSILRKLGKAELLLQQSRA 883 6789********************9888888888889999******************* PP HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHHHHTTS-GGGGBTT-H CS Acyl-CoA_dh_2 57 lleraaerlealadrgaevtpeeraearrdaalavelavaavdrlfeaaGgsalfkesp 115 +l++a++ ++r + +++ + +++ + + ++a+++ +++++G+ +l ++ p Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 884 MLYQATDW----WERYPDLHDQLLSPLVSAKVTSQNNSIAICEICIRVTGSLGLTQALP 938 *******9....9999999999999999******************************* PP HHHHHHHHHHHTSSTTT- CS Acyl-CoA_dh_2 116 lqRfwRDahaaaaHalld 133 l+R++RD+ a+ +H l+d Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 939 LERYLRDVYAGITHPLTD 956 **************9987 PP >> Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 1.3 3.6 6.8e+03 4 31 .. 522 542 .. 518 559 .. 0.45 2 ! 38.2 0.1 9.3e-13 1.7e-09 6 91 .. 569 653 .. 565 662 .. 0.85 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 3.6 HHHHHHHHHHHHHHHTTTTHHHHHHHTS CS Acyl-CoA_dh_N 4 qealrdevrefaeeelapeaaewdeeee 31 ++a r+e+++ +++e +e + e Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 522 EAAAREEAERAVDDEE----DEEE---E 542 3334444444444433....2221...1 PP == domain 2 score: 38.2 bits; conditional E-value: 9.3e-13 HHHHHHHHHHHHHTTTTHHHHHHHTS--HHHHHHHHHTTCSSTTS-GGGTSCGT-HHHH CS Acyl-CoA_dh_N 6 alrdevrefaeeelapeaaewdeeeefprelwrklaelGllgitvpeeyGGagldalel 64 +++d +r+ a++ + ++aae+d++ +fp++ + + + G+ + vp+e+GG g+++ e+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 569 QYVDVARAIAAKFA-ERAAEHDRAVSFPHKNFFDIRASGISKMVVPKEFGGWGATLSEA 626 56788888887755.6799997666***8888899889***************99**** PP HHHHHHHHHH-HHHHHHHHHHHHTTHH CS Acyl-CoA_dh_N 65 alvleelaradaglavalgvhsslvap 91 + ++e+la +d+++a++l++h + v++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 627 CAAVEALAEGDGSTALSLSMHLQTVGE 653 ********************9887765 PP >> Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.4 0.0 3.3e-09 6.1e-06 25 129 .. 839 947 .. 824 951 .. 0.85 Alignments for each domain: == domain 1 score: 26.4 bits; conditional E-value: 3.3e-09 HHHHHHHHHHHHHHH--TTSS-GGGSHHHHHHHHHHHHHHHHHHHHHHHHHH...HHT- CS Acyl-CoA_dh_1 25 aarraleealeyarqrkafgrplidfqlireklaemaaeleaarllvyraae...alda 80 +ar + e++++++++r + + +++ +i +kl++ ++ l+++r+++y+a+ ++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 839 TARYVSERVAALTNRRDTDINGFAEYDSILRKLGKAELLLQQSRAMLYQATDwweRYPD 897 4677778888888888888899*****************************96665555 PP TTS-.HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHT CS Acyl-CoA_dh_1 81 gkpd.saeaamaKllaselaqevadeamqllGgrGyaeeyplerlyrdar 129 +++ aK+ + + ++++++ + G G+++ pler++rd+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 898 LHDQlLSPLVSAKVTSQNNSIAICEICIRVTGSLGLTQALPLERYLRDVY 947 555543333449************************************86 PP >> dsrm Double-stranded RNA binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.9 0.0 5.1e-08 9.4e-05 2 65 .. 441 508 .. 440 510 .. 0.69 2 ? -1.8 0.0 2.5 4.6e+03 53 65 .. 622 634 .. 611 635 .. 0.78 Alignments for each domain: == domain 1 score: 22.9 bits; conditional E-value: 5.1e-08 HHHHHHHHHHTT.....SCCEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEESSHHHH CS dsrm 2 kskLqelcqkkg.....kppnyeyvseegpphslkkFtvtvkvngklygtGvgssKKeA 55 k Lq +qkk ++ ++ g + s k+++v + ++++ +++G g sKKeA Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 441 KGILQDVAQKKYrevprYEDLGTEALPPGNSYS-KEWIVGAMLKNQVVAQGRGVSKKEA 498 666777666665433332222223334566666.777788888**************** PP HHHHHHHHHH CS dsrm 56 eqlAAekALq 65 +q+AA+ AL Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 499 QQAAARSALI 508 ********95 PP == domain 2 score: -1.8 bits; conditional E-value: 2.5 HHHHHHHHHHHHH CS dsrm 53 KeAeqlAAekALq 65 ++e +AA++AL+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 622 TLSEACAAVEALA 634 57999******96 PP >> Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 0.0 1e-05 0.019 6 49 .. 685 739 .. 684 741 .. 0.81 2 ? -3.3 0.0 3.6 6.6e+03 15 24 .. 835 844 .. 834 846 .. 0.82 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1e-05 Acyl-CoA_dh_M 6 Epg.aGsDv.....anlsTtArrdgdg.....yvlnGtKwfisnggiadlalvla 49 Ep+ G Dv + ++T+Ar++ g +++nG+K+ +++ d+++v a Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 685 EPDeNGRDVssnggGRPNTRARPVFVGgevdhWIINGAKTRAVMAPVLDYFIVPA 739 66666777777777788899988644445999*********************87 PP == domain 2 score: -3.3 bits; conditional E-value: 3.6 Acyl-CoA_dh_M 15 nlsTtArrdg 24 ++++tAr++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 835 AIRCTARYVS 844 799****975 PP >> Sigma70_ner Sigma-70, non-essential region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 3.1 7.7e-05 0.14 40 104 .. 517 583 .. 484 592 .. 0.66 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 7.7e-05 Sigma70_ner 40 eaeeeseddeeeeed.dddddededeeeeseeadegpdpeear.erFaelrkqyeklek 96 +++e+++++ ee+e dd++++e+e+e+++++d+gp a F+ +qy ++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 517 APAEAEAAAREEAERaVDDEEDEEEESERETAEDNGPSSVLAPvSPFESRGHQYVDVAR 575 33333333333333324555555555558899****99999862458888888888888 PP Sigma70_ner 97 alekegrk 104 a++ ++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193989450 576 AIAAKFAE 583 88776665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (977 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 731 (0.0492887); expected 296.6 (0.02) Passed bias filter: 425 (0.0286562); expected 296.6 (0.02) Passed Vit filter: 63 (0.00424786); expected 14.8 (0.001) Passed Fwd filter: 10 (0.000674263); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.45u 0.47s 00:00:00.92 Elapsed: 00:00:02.58 # Mc/sec: 988.49 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995824 [L=674] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-42 144.5 0.2 4.1e-42 143.5 0.2 1.5 2 DEAD DEAD/DEAH box helicase 1.5e-24 85.5 0.1 4e-24 84.2 0.1 1.7 1 Helicase_C Helicase conserved C-terminal domain 0.00034 20.2 0.2 0.00065 19.3 0.1 1.4 1 AAA_30 AAA domain 0.0014 18.4 0.0 0.0024 17.7 0.0 1.4 1 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.021 14.3 0.0 0.044 13.3 0.0 1.6 1 Plectin Plectin repeat 0.061 12.3 0.1 0.11 11.5 0.0 1.3 1 CMS1 U3-containing 90S pre-ribosomal complex subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 143.5 0.2 1.7e-45 4.1e-42 2 166 .. 140 314 .. 139 317 .. 0.92 2 ? -3.7 0.0 2.8 7e+03 76 102 .. 396 425 .. 369 426 .. 0.53 Alignments for each domain: == domain 1 score: 143.5 bits; conditional E-value: 1.7e-45 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT.......EEEEEESS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq.......kalivaPt 53 iQ+e+i i + +d++++a+TG+GKT+aflip++++ll++ ++ ++++++Pt Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995824 140 TIQTECIGPIKEMKDLVARARTGTGKTMAFLIPLVERLLQGPPSlargrqaRVVVITPT 198 69************************************9985457************** PP HHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 54 reLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvst 112 reLa q+ +++ ++ + l+ + ++gg++ + q ++l+ gvdivv+Tpgrl+dlv + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995824 199 RELAMQIGTEVASLSST--LQSATLYGGTSYE-TQVRKLQSGVDIVVATPGRLKDLVAR 254 ***************98..9**********88.9999**999***************** PP TSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCT......TSEEEEEESS-THH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF DEAD 113 gklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgk......rlqvivlSATlpkd 165 + ++ qv++lVlDEad++l+qgf d+++ i++ ++ + +lq++++SAT+p+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995824 255 RAMRYDQVETLVLDEADTMLDQGFADDMDAIIREIKASQqstpgaKLQILLFSATIPEW 313 999******************************9977775555545**********965 PP H CS x RF DEAD 166 v 166 Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995824 314 T 314 5 PP == domain 2 score: -3.7 bits; conditional E-value: 2.8 EEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 76 lliiggvalardqlsvl....dngvdivvgT 102 +++g+++++r+++ v+ + +++v+T Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995824 396 RALHGDHSQRRREE-VVsdfkAGAFNVLVAT 425 34578888664444.4447666666777766 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.2 0.1 1.6e-27 4e-24 12 78 .] 397 463 .. 391 463 .. 0.97 Alignments for each domain: == domain 1 score: 84.2 bits; conditional E-value: 1.6e-27 EESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHH CS Helicase_C 12 ilhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQr 70 +lhg+ +q+ ree++++f+ag ++vlvat+va+rG+d+p+v+ Vi+fd+p+s +++++r Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995824 397 ALHGDHSQRRREEVVSDFKAGAFNVLVATDVASRGLDIPNVTRVIHFDFPDSLETFVHR 455 79********************************************************* PP HTTSSTTT CS Helicase_C 71 iGRtgRag 78 +GR+gRag Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995824 456 SGRAGRAG 463 ******97 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.3 0.1 2.6e-07 0.00065 22 120 .. 156 292 .. 142 297 .. 0.78 Alignments for each domain: == domain 1 score: 19.3 bits; conditional E-value: 2.6e-07 AAA_30 22 vvqGpAGtGKttvlka..lrealea.......agkrviglAptgkaakvLeeelgiear 71 v +++ GtGKt + ++++l+ ++ rv++++pt + a +++ e++ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995824 156 VARARTGTGKTMAFLIplVERLLQGppslargRQARVVVITPTRELAMQIGTEVASLSS 214 567899*****764332255555559999987779************************ PP AAA_30 72 Tiasllerldkaeaegrke..........................ldaktllvvDEA.g 103 T++s + + +++ + d+ + lv+DEA + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995824 215 TLQSATLYGGTSYETQV-RklqsgvdivvatpgrlkdlvarramrYDQVETLVLDEAdT 272 **998877777554444.3589***************9999987777777*******44 PP AAA_30 104 mvdt...rqlarllraaeka 120 m+d+ +++++++r+++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995824 273 MLDQgfaDDMDAIIREIKAS 292 66643336777888777765 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 0.0 9.8e-07 0.0024 23 75 .. 150 214 .. 116 312 .. 0.67 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 9.8e-07 .TTSEEEEEESTTSTHHHHHHH.HHHHH-S...........-EEEEESSHHHHHHHHHH CS ResIII 23 dekkrglivmaTGtGKTlvaas.liarlar...........kflflvprkelleqalee 69 +e k ++ + TGtGKT+ + l++rl++ +++++ p++el q e Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995824 150 KEMKDLVARARTGTGKTMAFLIpLVERLLQgppslargrqaRVVVITPTRELAMQIGTE 208 5678889999********9996588899999999999******************9988 PP GGGGTG CS ResIII 70 fkkfes 75 +s Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995824 209 VASLSS 214 822222 PP >> Plectin Plectin repeat # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 1.8e-05 0.044 22 42 .. 111 131 .. 109 134 .. 0.91 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 1.8e-05 EEHHHHHHTTSS-HHHHHHHH CS Plectin 22 lsveeAirrGlidpelaqkLl 42 ++++eA+++Gli +++a kL Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995824 111 VPLDEAVANGLIQKGTANKLR 131 79*****************97 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.0 4.3e-05 0.11 176 210 .. 236 270 .. 227 296 .. 0.80 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 4.3e-05 CMS1 176 srigiavGtpgRiadLleeeslsvdeLkrivlDas 210 s + i v tpgR++dL+ ++ d+++ +vlD + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193995824 236 SGVDIVVATPGRLKDLVARRAMRYDQVETLVLDEA 270 568899*************************9853 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (674 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 548 (0.0369496); expected 296.6 (0.02) Passed bias filter: 339 (0.0228575); expected 296.6 (0.02) Passed Vit filter: 35 (0.00235992); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.33u 0.44s 00:00:00.77 Elapsed: 00:00:01.91 # Mc/sec: 921.13 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194025376 [L=424] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-26 90.1 0.0 2.2e-25 88.3 0.0 1.9 2 Helicase_C Helicase conserved C-terminal domain Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.3 0.0 1.5e-29 2.2e-25 2 78 .] 79 155 .. 78 155 .. 0.98 2 ? -1.7 0.0 0.18 2.7e+03 13 32 .. 294 313 .. 289 345 .. 0.78 Alignments for each domain: == domain 1 score: 88.3 bits; conditional E-value: 1.5e-29 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSS CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl 60 l k +++++ lhg+ q +r+ +l++f++ + ++lvat+va+rG+d+p++n+Vinfd+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194025376 79 RLMKANYPCLSLHGGKDQLDRDSTLDEFKKREVDILVATSVAARGLDVPSLNLVINFDC 137 68999****************************************************** PP SSSHHHHHHHHTTSSTTT CS Helicase_C 61 prsvtsyiQriGRtgRag 78 p+ +++y++r GRtgRag Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194025376 138 PDHYEDYVHRCGRTGRAG 155 ****************97 PP == domain 2 score: -1.7 bits; conditional E-value: 0.18 ESTTSTHHHHHHHHHHHHTT CS Helicase_C 13 lhgelpqnereeileqfnag 32 ++g+++ +e e+ + qfn+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194025376 294 CDGSISYSEAEASILQFNNA 313 67788888888888888874 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (424 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 960 (0.0647293); expected 296.6 (0.02) Passed bias filter: 738 (0.0497606); expected 296.6 (0.02) Passed Vit filter: 42 (0.00283191); expected 14.8 (0.001) Passed Fwd filter: 1 (6.74263e-05); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.27u 0.67s 00:00:00.94 Elapsed: 00:00:03.55 # Mc/sec: 311.77 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 [L=763] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-42 143.6 0.0 3e-41 140.7 0.0 2.1 2 DEAD DEAD/DEAH box helicase 2.1e-24 85.1 0.1 5.9e-24 83.7 0.0 1.7 1 Helicase_C Helicase conserved C-terminal domain 1e-07 31.8 0.0 2.3e-07 30.6 0.0 1.7 1 GUCT GUCT (NUC152) domain 0.00025 20.2 0.0 0.00025 20.2 0.0 3.6 4 CMS1 U3-containing 90S pre-ribosomal complex subunit 0.00086 19.1 0.0 0.00086 19.1 0.0 3.1 4 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 1.8 7.2 6.8 3.6 6.2 4.7 1.4 1 DUF2217 Uncharacterized conserved protein (DUF2217) Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 140.7 0.0 1.2e-44 3e-41 2 167 .. 132 307 .. 131 309 .. 0.90 2 ? 0.1 0.0 0.19 4.6e+02 46 101 .. 336 394 .. 314 420 .. 0.64 Alignments for each domain: == domain 1 score: 140.7 bits; conditional E-value: 1.2e-44 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT.........EEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.........xxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq.........kaliv 50 p+Q e++p+il g+dv+v+a+TG+GKTlaf++pvi+++ + + ++l + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 132 PVQHETLPWILAGNDVIVKARTGTGKTLAFALPVIEHMRANhR-PtdgkrgrapRVLTL 189 89************************************88644.26************* PP ESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 51 aPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddl 109 aPtreLa q+ ++++ +++ ++ +++gg + + q s l +g di vgTpgr++d+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 190 APTRELAIQVETEFQVVGQG--FSSICLYGGAPYQ-PQISALTRGLDIAVGTPGRIVDH 245 *****************987..8999******977.9*****999************** PP HHTTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTT....SEEEEEESS-TH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxx RF DEAD 110 vstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkr....lqvivlSATlpk 164 +++++l+l ++++l+lDEad++l+qgf+d l+ il+++ r ++++++SAT+p+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 246 LEKNTLSLDNLEWLILDEADQMLDQGFQDSLDFILNAVPAERRtsrtVHILLFSATVPS 304 ***999***********************77777776644442344499********97 PP HHH CS xxx RF DEAD 165 dvk 167 v+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 305 WVR 307 665 PP == domain 2 score: 0.1 bits; conditional E-value: 0.19 EEEEEESSHHHHHHHHHHHHHHTTT.SSCCEEEE..TTTSEHHHHHHHHHTT.-SEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 kalivaPtreLaeqtlnnlkqfkky.pklrvlli..iggvalardqlsvldngvdivvg 101 k l +a + + +qtl+++ ++++ k r+ + +++ a + ++s ++n+++++ g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 336 KHLAIACSNSVRQQTLSDVIKVYSGgIKSRTIVFanTKSEANEIATKSSISNECQVLHG 394 56777777888888888888888774333333332233333333344444666776654 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.7 0.0 2.4e-27 5.9e-24 10 78 .] 389 457 .. 383 457 .. 0.97 Alignments for each domain: == domain 1 score: 83.7 bits; conditional E-value: 2.4e-27 EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHH CS Helicase_C 10 vailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyi 68 + +lhg+++q +re +l++f++g++ +lvat+va+rG+d+++v++Vi++++prs ++yi Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 389 CQVLHGDISQGQREITLKDFRDGNFSILVATDVAARGLDIEGVELVIQCEPPRSHETYI 447 679******************************************************** PP HHHTTSSTTT CS Helicase_C 69 QriGRtgRag 78 +r+GRtgRag Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 448 HRSGRTGRAG 457 ********97 PP >> GUCT GUCT (NUC152) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.6 0.0 9.4e-11 2.3e-07 5 96 .. 580 668 .. 575 669 .. 0.89 Alignments for each domain: == domain 1 score: 30.6 bits; conditional E-value: 9.4e-11 ------------EEEEEEE-SS--SSTHHHHHHHHHHS-HHHHTT-EEEEE-TTSSEEE CS GUCT 5 ikqRSLltseegyvTllLeaskeistlsyvwkvlkrfLseeaveeikgltlladekGav 63 +RSLl s eg++Tl+++++++is+ + ++ + + L+ v++i+++ +++ a Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 580 EAERSLLGSLEGFITLMVHSKQPISSSGSLYSKMSKYLDPISVNSIRDVRTCEGGAIAN 638 579**************************************************999999 PP EEEEHHHHHHHHHH--SS.S-EEE---XXXXXX CS GUCT 64 FDvpeeeaeellaksqeaagvelevvtelPelq 96 F v+++++ +l+ ++ +v++e++ elPel+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 639 FPVRSAHK--VLELQNT-GDVTFERCLELPELE 668 98888766..7776444.49***********96 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.7 3.5 0.98 2.4e+03 6 46 .. 29 51 .. 4 119 .. 0.56 2 ! 20.2 0.0 1e-07 0.00025 179 209 .. 233 263 .. 224 277 .. 0.90 3 ? 1.6 0.0 0.047 1.2e+02 169 205 .. 470 511 .. 467 516 .. 0.69 4 ? -2.6 0.6 0.87 2.1e+03 18 31 .. 545 555 .. 536 579 .. 0.47 Alignments for each domain: == domain 1 score: -2.7 bits; conditional E-value: 0.98 CMS1 6 rkrkaendekgkkeksekkRskkkerkkeklketqDveagl 46 + +k+++++++ ek +k++k l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 29 KTEKSQKEQQAVPEKVTGKKRK------------------L 51 1122222222222222222222..................2 PP == domain 2 score: 20.2 bits; conditional E-value: 1e-07 CMS1 179 giavGtpgRiadLleeeslsvdeLkrivlDa 209 iavGtpgRi+d le+++ls+d+L+ ++lD Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 233 DIAVGTPGRIVDHLEKNTLSLDNLEWLILDE 263 69***************************96 PP == domain 3 score: 1.6 bits; conditional E-value: 0.047 CMS1 169 sitylkk..srigia...vGtpgRiadLl.eeeslsvdeLkri 205 +++ylk+ +gi +Gtp+R +L+ + s+++d++k + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 470 KMGYLKRieENVGIKfqlIGTPQRS-QLIeYNSSIALDQIKAV 511 5666665223455534447*****5.67747999*****9976 PP == domain 4 score: -2.6 bits; conditional E-value: 0.87 CMS1 18 keksekkRskkker 31 kek k+skkk+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 545 KEK---KKSKKKDA 555 122...22222211 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.5 3.2 6 1.5e+04 84 133 .. 23 69 .. 4 97 .. 0.40 2 ! 19.1 0.0 3.5e-07 0.00086 27 75 .. 146 208 .. 128 229 .. 0.81 3 ? -1.2 0.0 0.59 1.5e+03 52 133 .. 336 386 .. 315 417 .. 0.48 4 ? -3.6 0.0 3.2 8e+03 93 113 .. 544 564 .. 526 586 .. 0.53 Alignments for each domain: == domain 1 score: -4.5 bits; conditional E-value: 6 ESSS-B---SEEEEEHHHHH.............................. CS ResIII 84 niavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeend 133 + +k+ + +++qk+ + ek + +k+ + t +kl+ a + ++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 23 KK---TKKPKTEKSQKEQQAVPEKVTGKKRKLEETSSKLQPAAKVQKTIG 69 11...122222222222222222323333333333333333333333333 PP == domain 2 score: 19.1 bits; conditional E-value: 3.5e-07 EEEEEESTTSTHHHHHH....HHHHHH-S..............-EEEEESSHHHHHHHH CS ResIII 27 rglivmaTGtGKTlvaa....sliarlar..............kflflvprkelleqal 67 +++++ TGtGKTl a + + r ++l l+p++el q + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 146 DVIVKARTGTGKTLAFAlpviEHM----RanhrptdgkrgrapRVLTLAPTRELAIQVE 200 67899**********995444234....33555999999******************** PP HHGGGGTG CS ResIII 68 eefkkfes 75 ef+ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 201 TEFQVVGQ 208 ***55544 PP == domain 3 score: -1.2 bits; conditional E-value: 0.59 -EEEEESSHHHHHHHHHHGGGGTGG...GEEEESSS-B---SEEEEEHHHHH....... CS ResIII 52 kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkk 110 k l ++ ++++ +q+l + k s i+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 336 KHLAIACSNSVRQQTLSDVIKVYSGGIK------------------------------- 363 4455566666666666665222222222............................... PP ....................... CS ResIII 111 dkeiilttiqklhkaleeeeend 133 +++i++++ ++ +++ ++++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 364 SRTIVFANTKSEANEIATKSSIS 386 22222222222222222222222 PP == domain 4 score: -3.6 bits; conditional E-value: 3.2 SEEEEEHHHHH.......... CS ResIII 93 lfgeeqkkskdkeekkkkdke 113 +++++k kd e k+ +e Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 544 DKEKKKSKKKDAEDAPKDATE 564 222333333333334444444 PP >> DUF2217 Uncharacterized conserved protein (DUF2217) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 4.7 0.0015 3.6 39 141 .. 20 127 .. 9 139 .. 0.58 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0015 DUF2217 39 rkrkkkeegeklitrrplsakkdkvssrrvr....ssssksndtlsvvsskasskssss 93 +k kk +++++ ++++++a +kv+ ++ + ss+ ++ ++ ++ ss ssss Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 20 KKTKKTKKPKTEKSQKEQQAVPEKVTGKKRKleetSSKLQPAAKVQKTIGSSSSSSSSS 78 34344444555556666666666665544333332444444444555555556666666 PP DUF2217 94 ssSlasvsarnSvsssaaansgsweaaga.eeslettdttaenLylmgm 141 ssSlas a + ++ ++++++e ++ e+++++ t + L l+g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193994680 79 SSSLASSAADSTGKKEMKIKGKAVEMEKIpIEDFSISSETIKGLKLQGY 127 6677766655555555555577777777666666777777777777775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (763 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1497 (0.100937); expected 296.6 (0.02) Passed bias filter: 518 (0.0349268); expected 296.6 (0.02) Passed Vit filter: 85 (0.00573124); expected 14.8 (0.001) Passed Fwd filter: 13 (0.000876542); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.45u 0.53s 00:00:00.98 Elapsed: 00:00:03.01 # Mc/sec: 661.69 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022620 [L=258] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-29 99.9 0.0 9.5e-29 99.0 0.0 1.4 1 Helicase_C Helicase conserved C-terminal domain Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 99.0 0.0 6.4e-33 9.5e-29 2 78 .] 65 141 .. 64 141 .. 0.98 Alignments for each domain: == domain 1 score: 99.0 bits; conditional E-value: 6.4e-33 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSS CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl 60 lek+g+k++i+hg+ +q er++ l++f++g+++vl+at+va+rG+d+p v V+nfdl Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022620 65 SLEKEGVKAVIIHGDRMQHERDDALKKFRKGTCPVLIATDVAARGLDIPWVARVVNFDL 123 589******************************************************** PP SSSHHHHHHHHTTSSTTT CS Helicase_C 61 prsvtsyiQriGRtgRag 78 p++ +sy++riGRtgRag Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022620 124 PKDIDSYVHRIGRTGRAG 141 ****************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (258 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 394 (0.026566); expected 296.6 (0.02) Passed bias filter: 385 (0.0259591); expected 296.6 (0.02) Passed Vit filter: 33 (0.00222507); expected 14.8 (0.001) Passed Fwd filter: 1 (6.74263e-05); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.22u 0.43s 00:00:00.65 Elapsed: 00:00:02.38 # Mc/sec: 282.97 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 [L=835] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-22 79.7 2.3 5.1e-22 78.5 0.4 2.1 2 ResIII Type III restriction enzyme, res subunit 8.4e-22 77.4 0.7 8.4e-22 77.4 0.5 2.2 3 DEAD DEAD/DEAH box helicase 6e-14 51.6 0.0 1.5e-13 50.4 0.0 1.7 1 Helicase_C Helicase conserved C-terminal domain 1.3e-11 43.8 0.6 2.3e-11 43.0 0.4 1.3 1 SNF2_N SNF2 family N-terminal domain 1.9e-07 30.7 0.0 1.1e-06 28.3 0.1 2.2 2 AAA_19 Part of AAA domain 3.7e-07 30.3 0.7 2.8e-06 27.5 0.1 2.9 1 AAA_22 AAA domain 5.5e-06 25.9 0.2 0.0016 17.9 0.0 3.3 3 AAA_25 AAA domain 3.2e-05 23.0 0.7 0.00023 20.2 0.4 2.1 2 DUF2075 Uncharacterized conserved protein (DUF2075) 4e-05 23.2 0.9 0.00042 19.9 0.3 2.5 2 AAA_30 AAA domain 6.7e-05 22.4 1.2 0.3 10.4 0.0 3.9 3 AAA_10 AAA-like domain 0.00074 19.1 1.0 0.31 10.5 0.0 2.5 2 AAA_11 AAA domain 0.00084 18.7 0.5 0.0052 16.2 0.0 2.4 2 IstB_IS21 IstB-like ATP binding protein 0.0017 18.1 0.2 0.0072 16.1 0.0 2.2 1 SAM_2 SAM domain (Sterile alpha motif) 0.0018 18.2 0.6 0.069 13.1 0.0 3.2 3 Ste50p-SAM Ste50p, sterile alpha motif 0.0022 17.6 1.5 0.0042 16.7 1.0 1.5 1 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/C 0.0044 16.4 0.1 0.013 14.8 0.1 1.8 1 DEAD_2 DEAD_2 0.0046 17.1 5.2 0.012 15.7 2.2 2.8 2 AAA ATPase family associated with various cellula 0.0058 15.8 0.1 0.012 14.8 0.1 1.5 1 PhoH PhoH-like protein 0.0063 16.8 1.0 0.046 14.0 0.1 2.7 2 AAA_18 AAA domain 0.0085 16.2 0.0 0.021 14.9 0.0 1.8 1 SAM_1 SAM domain (Sterile alpha motif) 0.0096 15.9 0.4 0.27 11.1 0.0 3.0 2 AAA_16 AAA ATPase domain ------ inclusion threshold ------ 0.018 15.8 0.1 0.11 13.3 0.0 2.5 1 AAA_17 AAA domain 0.046 13.3 1.0 0.51 9.9 0.2 2.5 2 NACHT NACHT domain 0.064 12.8 1.4 0.1 12.2 0.2 1.9 2 Helicase_RecD Helicase 0.076 12.4 2.0 0.13 11.6 1.4 1.4 1 SRP54 SRP54-type protein, GTPase domain 0.077 12.8 0.3 8.1 6.3 0.0 2.9 2 HsbA Hydrophobic surface binding protein A 0.088 12.5 0.0 0.24 11.1 0.0 1.7 1 SAM_PNT Sterile alpha motif (SAM)/Pointed domain 0.099 11.9 6.6 0.068 12.4 3.2 1.8 1 UvrD-helicase UvrD/REP helicase N-terminal domain 0.11 12.6 0.0 0.5 10.5 0.0 2.2 1 RNA_helicase RNA helicase Domain annotation for each model (and alignments): >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 78.5 0.4 1e-24 5.1e-22 3 183 .. 125 285 .. 123 286 .. 0.85 2 ? 0.1 0.0 1.2 6e+02 51 108 .. 479 545 .. 435 557 .. 0.80 Alignments for each domain: == domain 1 score: 78.5 bits; conditional E-value: 1e-24 EE-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S.......-EE CS ResIII 3 klrpyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar.......kfl 54 +lrpyQee + + +++iv++TGtGKT v a+++ r+++ k+l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 125 QLRPYQEELYKYAMK-------CGNVIIVAPTGTGKTTVGAAIARRILQeeakmgaKVL 176 789999999887774.......3599***************977777779********* PP EEESSHHHHHHHHHHGGGGTGG...GEEEESSS-B---SEEEEEHHHHH.......... CS ResIII 55 flvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdke 113 f+ +k+l q +ef +e++ + k++ +++k +++ +++ k+ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 177 FVTQTKALATQQGKEF---------EEQL-----SPHKVVVWSGEKATKEPMEDFKKHS 221 ****************.........3333.....34677788999999999******** PP ........................HTHHHHTTT-SEEEEETGGGTTSTT.THHHHH... CS ResIII 114 iilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkkyreile... 169 i+++t+q l +++ e + ++ +++i+DE+H++ +k+ ++++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 222 IVVSTAQYLMNQSIE-----------DLLKTKKVKLVIFDECHHVVKKHPFKRVMDsik 269 **********99765...........223344567***************999998888 PP ..---SEEEEEESS-S CS ResIII 170 ..fkkafllglTATpe 183 k+++++glTATp Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 270 klDKQPKVVGLTATPA 285 8*99***********6 PP == domain 2 score: 0.1 bits; conditional E-value: 1.2 S.........-EEEEESSHHHHHHHHHHGGGGTGG...GEEEESSS-B---SEEEEEHH CS ResIII 51 r.........kflflvprkelleqaleefkkfeskkiefekkniavakkdklfgeeqkk 100 + l+++ +k+ + ++le f++ +++ + + kn+++++ d +++++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 479 AnvggdptkfRGLIFATEKKTVARLLEVFENHPDEQLKNFLKNVKKCDGDVNDKQTERL 537 35555666566689999999999999999888888888889999888888888888877 PP HHH..... CS ResIII 101 skdkeekk 108 +kd +e++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 538 LKDFREGH 545 77766654 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.4 0.5 1.7e-24 8.4e-22 2 164 .. 128 286 .. 127 291 .. 0.85 2 ? -2.6 0.0 6.4 3.3e+03 124 144 .. 311 331 .. 292 391 .. 0.57 3 ? -1.9 0.0 3.9 2e+03 63 102 .. 514 552 .. 451 557 .. 0.75 Alignments for each domain: == domain 1 score: 77.4 bits; conditional E-value: 1.7e-24 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT..EEEEEESSHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx..xxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq..kalivaPtreLa 57 p+Q+e ++ +++ g+v+++a+TG+GKT++ + + +il e+ k k+l+v+ t++La Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 128 PYQEELYKYAMKCGNVIIVAPTGTGKTTVGAAIARRILQEEaK-MgaKVLFVTQTKALA 185 89***************************99888888877654.258************ PP HHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 58 eqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkln 116 q+ +++++ +++ +v++++g++a++ + + +++ ivv+T + l++ ++ l+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 186 TQQGKEFEEQLSP--HKVVVWSGEKATK-EPMEDFKK-HSIVVSTAQYLMNQSIEDLLK 240 ***********98..69******99977.55556644.8*********99998876669 PP CTTEEEEEEETHHHHHST.TTHHHHHHHHHHSHHCTTSEEEEEESS-TH CS xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 117 lsqvrllVlDEadrllsq.gfsdqlnqilqilcdgkrlqvivlSATlpk 164 +++v+l+++DE++++ ++ f++ +++i ++ k+ +v+ l+AT+ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 241 TKKVKLVIFDECHHVVKKhPFKRVMDSIKKLD---KQPKVVGLTATPAF 286 99**************9856666666666553...4578*******984 PP == domain 2 score: -2.6 bits; conditional E-value: 6.4 EEETHHHHHSTTTHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxx RF DEAD 124 VlDEadrllsqgfsdqlnqil 144 V+D +d+l + ++ +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 311 VVDHVDELRQATTEPRFIRVP 331 333333333333333333333 PP == domain 3 score: -1.9 bits; conditional E-value: 3.9 HHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 63 nlkqfkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 +lk+f+k +v + g+v+ + ++++ l ++++++v++T Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 514 QLKNFLK----NVKKCDGDVNDK-QTERLLkdfrEGHTNLVIAT 552 3445554....467777888744.44444477787888888887 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 50.4 0.0 2.9e-16 1.5e-13 3 76 .. 515 587 .. 513 589 .. 0.93 Alignments for each domain: == domain 1 score: 50.4 bits; conditional E-value: 2.9e-16 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlp 61 l+++ +v +++g+ + ++ e+ l++f++g ++ ++at+ +e+G+d+p++n Vi +d Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 515 LKNFLKNVKKCDGDVNDKQTERLLKDFREGHTNLVIATDKLEEGLDVPACNIVIRYDSV 573 6666678899************************************************* PP SSHHHHHHHHTTSST CS Helicase_C 62 rsvtsyiQriGRtgR 76 + + ++Q +GR +R Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 574 STARALVQSRGR-AR 587 ************.55 PP >> SNF2_N SNF2 family N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 43.0 0.4 4.6e-14 2.3e-11 27 173 .. 142 285 .. 127 304 .. 0.85 Alignments for each domain: == domain 1 score: 43.0 bits; conditional E-value: 4.6e-14 EEEE---TTSSCCHHHHHHHH.HHCCCHS-.....EEEE--T.TTHHHHHHHHHHCS.T CS xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF SNF2_N 27 ggiLaDemGlGKTvqvialil.llkeeaerkkkkstLivvPs.slldqWvneierhvsp 83 ++i+ +G GKT a+ + +l+eea++ ++L v + +l++q +e+e+ +sp Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 142 NVIIVAPTGTGKTTVGAAIARrILQEEAKMG--AKVLFVTQTkALATQQGKEFEEQLSP 198 57788889****8655555554677776665..35666666659*************88 PP .T--EEE--HCCCHHHTT-SSSTT-SEEEE-CCHHH..TSTCTCHHHHTSEEEEEEETT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SNF2_N 84 salrvlvyggqkkakksaaklladydvvittydvlralrekkrksvlkkvkwkrvvlDE 142 +v+v+ g+k a k+ + ++++ +v+ t ++l +++ + lk+ k+k v+ DE Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 199 --HKVVVWSGEK-ATKEPMEDFKKHSIVVSTAQYLM---NQSIEDLLKTKKVKLVIFDE 251 ..89*******9.8999999****************...888899999999******** PP CCGG..TTCSSHHHHHHCCCC.ECCEEEC-SS-S CS xxxx..xxxxxxxxxxxxxxx.xxxxxxxxxxxx RF SNF2_N 143 ahrl..knstskaaeallkls.tknrwiltGTPi 173 +h++ k +++ ++kl+ + + lt+TP Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 252 CHHVvkKHPFKRVMDSIKKLDkQPKVVGLTATPA 285 ****988899999******997888999*****6 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.3 0.1 2.1e-09 1.1e-06 13 56 .. 143 186 .. 134 204 .. 0.83 2 ? -2.5 0.0 8.2 4.2e+03 5 35 .. 787 814 .. 783 820 .. 0.74 Alignments for each domain: == domain 1 score: 28.3 bits; conditional E-value: 2.1e-09 AAA_19 13 lvvtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraak 56 +++ ++ GtGKTt+ aai++++l+ +e++ g++vl+v++t + a Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 143 VIIVAPTGTGKTTVGAAIARRILQ-EEAKmGAKVLFVTQTKALAT 186 5679********888888888887.57777********9998775 PP == domain 2 score: -2.5 bits; conditional E-value: 8.2 AAA_19 5 aalagnpllvvtGgPGtGKTttlaaiiaall 35 +a + n+ + tG PG + tl ++ a++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 787 DARS-NKGSC-TGSPGKEYA-TLNERVQARF 814 4556.88888.999*99988.8877777777 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.5 0.1 5.4e-09 2.8e-06 4 113 .. 140 273 .. 136 290 .. 0.78 Alignments for each domain: == domain 1 score: 27.5 bits; conditional E-value: 5.4e-09 AAA_22 4 agilvvtGesGvGKTtlarrlaeqldevaeaae...karvvfveapsstspkellkkll 59 g +++++++G+GKTt+ +a++ + +e a+v+fv+ ++ ++ k++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 140 CGNVIIVAPTGTGKTTVGAAIARRILQ----EEakmGAKVLFVTQTKAL-ATQQGKEFE 193 57799******************8643....234468888888888777.666667777 PP AAA_22 60 ralglpakg.....................rltteell.eallralrrrrvglliiDEa 96 ++l + t++ l+ + +++ l++++v+l+i DE Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 194 EQLSPHKVVvwsgekatkepmedfkkhsivVSTAQYLMnQSIEDLLKTKKVKLVIFDEC 252 77774444477778888888889******9999999998999999999999******** PP AAA_22 97 qh.Lrs...eelleelrdlld 113 +h +++ +++++ ++ l + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 253 HHvVKKhpfKRVMDSIKKLDK 273 **5532468888887777644 PP >> AAA_25 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 0.0 3e-06 0.0016 30 83 .. 138 210 .. 104 267 .. 0.58 2 ? 4.1 0.0 0.05 26 79 139 .. 334 388 .. 300 392 .. 0.82 3 ? -2.9 0.0 7.2 3.7e+03 75 146 .. 491 549 .. 481 550 .. 0.58 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 3e-06 AAA_25 30 lprgsltllaGapgtGKStlalqlaaava......................tGepflgp 66 + + +++++++gtGK+t+ +++a +++ +G++f Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 138 MK-CGNVIIVAPTGTGKTTVGAAIARRILqeeakmgakvlfvtqtkalatqQGKEFEEQ 195 33.44599*********************666555555555555444444444444222 PP AAA_25 67 vvpepgrVlylsaEdse 83 p +V+++s+E + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 196 L--SPHKVVVWSGEKAT 210 2..45555555555544 PP == domain 2 score: 4.1 bits; conditional E-value: 0.05 AAA_25 79 aEdseaelrrrlsailaalddpanlllvslagvgslrlvaddrrdalltadlerleaai 137 +E+ e ++++ +s + + l +a l ++ +++ +s++l++++ + +t+++e+l++ai Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 334 LEGEEVQVQKAISGAIGTL--QASLAVHLTPE-ESRTLRSMK---TFVTPEYEHLIKAI 386 7999999*****9999888..56665554455.699999887...4589********99 PP AAA_25 138 ee 139 + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 387 AK 388 87 PP == domain 3 score: -2.9 bits; conditional E-value: 7.2 AAA_25 75 lylsaEdseaelrrrlsailaalddpanlllvslagvgslrlvaddrrdalltadlerl 133 l++++E rl +++++++d++ +++ +v ++ ++ + + + erl Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 491 LIFATEKKT---VARLLEVFENHPDEQLKNFLK--NV-------KKCDGDVNDKQTERL 537 555555555...567777888887777777765..44.......122344445566666 PP AAA_25 134 eaaieelegpdlv 146 ++ +e + lv Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 538 LKDFRE-GHTNLV 549 666666.445555 PP >> DUF2075 Uncharacterized conserved protein (DUF2075) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.0 0.0 0.63 3.2e+02 162 190 .. 19 47 .. 7 65 .. 0.87 2 ! 20.2 0.4 4.4e-07 0.00023 10 98 .. 149 274 .. 142 387 .. 0.67 Alignments for each domain: == domain 1 score: 0.0 bits; conditional E-value: 0.63 DUF2075 162 qfRsaaseayiewvdalldkkkekakpls 190 q+R +++++w++ +l+ k++++ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 19 QIRAWNPQDVAAWLHGVLNVKAKEPLEEV 47 89999*************99999887765 PP == domain 2 score: 20.2 bits; conditional E-value: 4.4e-07 DUF2075 10 aGtGKtvlalnllael..edseeertavflsgNhplvkvlrealakkl........... 55 GtGKt ++ +++ ++ e+ + + + f+++ ++l ++++++l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 149 TGTGKTTVGAAIARRIlqEEAKMGAKVLFVTQTKALATQQGKEFEEQLsphkvvvwsge 207 7***************7633444444444444444444333333333344346666655 PP DUF2075 56 .ekkkkkeavkkpssfinnls.......kaekkkpkedvvivDEAhrllt......... 97 +k+ +e++kk s ++ +++ ++ k +k+++vi+DE h + + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 208 kATKEPMEDFKKHSIVVSTAQylmnqsiEDLLKTKKVKLVIFDECHHVVKkhpfkrvmd 266 5445555666666666666667777777788999**************99555555555 PP DUF2075 98 .......k 98 + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 267 sikkldkQ 274 55444430 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.9 0.3 8.2e-07 0.00042 1 119 [. 125 270 .. 125 313 .. 0.67 2 ? 0.6 0.0 0.66 3.4e+02 141 165 .. 691 715 .. 683 719 .. 0.84 Alignments for each domain: == domain 1 score: 19.9 bits; conditional E-value: 8.2e-07 AAA_30 1 tlsaeQkeaveavltsgdrvavvqGpAGtGKttvlkalre.alea...agkrviglApt 55 +l++ Q+e+ + +++ g+ +++++p GtGKttv +a+++ +l++ g +v+ ++ t Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 125 QLRPYQEELYKYAMKCGN--VIIVAPTGTGKTTVGAAIARrILQEeakMGAKVLFVTQT 181 58899********99995..66669**********996551555555448999999999 PP AAA_30 56 gkaakvLeeelgiearTiasllerldkaeaegrke........................ 90 ++ a + ++e++ + ++++ + +++++++ e Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 182 KALATQQGKEFEEQ-LSPHKVVVWSGEKATKEPMEdfkkhsivvstaqylmnqsiedll 239 99999999985522.22334444444433333333333555555555555555555554 PP AAA_30 91 .ldaktllvvDEAgmv.dtrqlarllraaek 119 +++ +l++ DE v ++ ++r+++ ++k Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 240 kTKKVKLVIFDECHHVvKKHPFKRVMDSIKK 270 3444447777776543144456666666665 PP == domain 2 score: 0.6 bits; conditional E-value: 0.66 AAA_30 141 vfrllaeeggetaeLtevvRqkdee 165 + ++l++ +g+t++L+e+ R++ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 691 LTKELQRLTGQTVKLDEMCRFTRQK 715 56899999************98765 PP >> AAA_10 AAA-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 0.0 0.017 8.6 2 29 .. 141 168 .. 141 182 .. 0.84 2 ! 10.4 0.0 0.00058 0.3 198 283 .. 221 308 .. 184 315 .. 0.74 3 ? 2.1 0.1 0.2 1e+02 176 176 .. 559 559 .. 412 716 .. 0.60 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.017 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF AAA_10 2 pnalvlGpsGsGKStllklivlqllaag 29 +n+++++p+G GK+t + i+++ l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 141 GNVIIVAPTGTGKTTVGAAIARRILQEE 168 599************9999988877655 PP == domain 2 score: 10.4 bits; conditional E-value: 0.00058 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF AAA_10 198 aavlliilsalirkmrkeepkgrrkaliiDEahrllsspegvdlldelaregRkfgval 256 ++v+ + + + +++++ + ++ k++i+DE+h++ ++ +++ +d++ ++ + +v Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 221 SIVVSTAQYLMNQSIEDLLKTKKVKLVIFDECHHVVKKHPFKRVMDSIKKLDKQPKVVG 279 555555555555666666669999********999999999999999999888888888 PP xxxxxxxxxxxxxxxx..xxxxxxxxxxx RF AAA_10 257 ilatQslsdlisspia..dgiinnsstki 283 ++at ++ i+ ++ +++++n++ +i Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 280 LTATPAFANSITGTARkvQTLMKNMEARI 308 88887775555444445777777776666 PP == domain 3 score: 2.1 bits; conditional E-value: 0.2 x RF AAA_10 176 l 176 l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 559 L 559 1 PP >> AAA_11 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.5 0.0 0.00061 0.31 5 64 .. 129 183 .. 125 205 .. 0.82 2 ! 6.8 0.1 0.0086 4.4 165 205 .. 214 256 .. 185 259 .. 0.82 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00061 AAA_11 5 sqlealkealksqgitliqGpPgtGKtttivelisqllekldgrealkkkrvLvcapsn 63 q e k a+k + +i p gtGKtt+ +++ +++l ++ea+ +++vL ++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 129 YQEELYKYAMKCGN-VIIVAPTGTGKTTVGAAIARRIL----QEEAKMGAKVLFVTQTK 182 56666777777777.899*******************4....47888999999888776 PP AAA_11 64 a 64 a Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 183 A 183 5 PP == domain 2 score: 6.8 bits; conditional E-value: 0.0086 AAA_11 165 keileeaeivcaTlsgsgskllaklte..kfdvviIDEAaqav 205 e +++++iv++T ++++++l + k++ vi DE+ ++v Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 214 MEDFKKHSIVVSTAQYLMNQSIEDLLKtkKVKLVIFDECHHVV 256 566799******************98888*********97665 PP >> IstB_IS21 IstB-like ATP binding protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.0 1e-05 0.0052 46 89 .. 139 186 .. 131 199 .. 0.75 2 ? -1.2 0.0 2.2 1.1e+03 69 101 .. 297 329 .. 290 331 .. 0.85 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 1e-05 IstB_IS21 46 qaenlvllGpsGvGKthlAialgveavr....aglsvlfvrledLvee 89 + n++++ p+G+GKt + +a++ + + g +vlfv+ ++ +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 139 KCGNVIIVAPTGTGKTTVGAAIARRILQeeakMGAKVLFVTQTKALAT 186 567******************997665421117899999987766554 PP == domain 2 score: -1.2 bits; conditional E-value: 2.2 IstB_IS21 69 veavraglsvlfvrledLveeLkrakgdgrler 101 v+ +++++++ v++ d v+eL++a + r+ r Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 297 VQTLMKNMEARIVKVVDHVDELRQATTEPRFIR 329 677889999999*************99988765 PP >> SAM_2 SAM domain (Sterile alpha motif) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.0 1.4e-05 0.0072 3 47 .. 22 75 .. 20 92 .. 0.79 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 1.4e-05 GHHHHHHHHHHHHT.......TTGGGHHHHHHTTCSCHHHHCTSCHHHH...HHT CS SAM_2 3 swsledvaeWLrsi.......glkqYadnFrdqgitgaelllrlteedL...krl 47 w+++dva WL+ + l++ +F ++i+g ++ll+lt+ +L ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 22 AWNPQDVAAWLHGVlnvkakePLEEVIAKFVVNQISG-SHLLELTHYHLftlLEI 75 7***********6666677779***************.********999643244 PP >> Ste50p-SAM Ste50p, sterile alpha motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.1 0.0 0.00014 0.069 5 63 .. 22 83 .. 19 93 .. 0.77 2 ? -0.8 0.1 3 1.5e+03 12 34 .. 522 544 .. 520 557 .. 0.87 3 ? 0.7 0.0 1 5.2e+02 19 36 .. 635 652 .. 629 658 .. 0.84 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 0.00014 T--HHHHHHHHHHHHSS-TTSCH...HHHHHHTT--CCCHHHHHHHHHHHCTTS-HHHHHH CS Ste50p-SAM 5 kWstdevvkkvkaeLgleetdpl...ilriRenditGsvLseltLqDCkeLcdddlkkaik 62 W ++v + + +L+++ ++pl i + n+i Gs L elt L + l ai Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 22 AWNPQDVAAWLHGVLNVKAKEPLeevIAKFVVNQISGSHLLELTHYHLFTLLEIKLAYAID 82 79*******************98333455667***********977666666666666665 PP H CS Ste50p-SAM 63 l 63 + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 83 I 83 5 PP == domain 2 score: -0.8 bits; conditional E-value: 3 HHHHHHHHSS-TTSCHHHHHHHT CS Ste50p-SAM 12 vkkvkaeLgleetdplilriRen 34 vkk+ ++ ++t+ l+++ Re Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 522 VKKCDGDVNDKQTERLLKDFREG 544 7999999999**********995 PP == domain 3 score: 0.7 bits; conditional E-value: 1 HSS-TTSCHHHHHHHTT- CS Ste50p-SAM 19 LgleetdplilriRendi 36 g ++td+l+ + +n+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 635 YGFDDTDTLCDYLYDNEY 652 6899*******9*99985 PP >> CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 1.0 8.2e-06 0.0042 3 133 .. 140 278 .. 138 310 .. 0.71 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 8.2e-06 CobA_CobO_BtuR 3 kgllivltGnGKGKstaalGmvlRalghgl....rvavvqFiKgkrevgEeaalealee 57 g +i++ +G GK+t + ++ R l ++ +v+ v K+ + +++ e+l+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 140 CGNVIIVAPTGTGKTTVGAAIARRILQEEAkmgaKVLFVTQTKALATQQGKEFEEQLSP 198 588999999*************9998876544448899999999555555667777766 PP CobA_CobO_BtuR 58 .velekmgegftwetqdreed....aaaaeeawe.kakellaseeydlvvLDElnyalk 110 + ge+ t+e ++ ++ ++a+ ++ +++ll++++++lv++DE ++k Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 199 hKVVVWSGEKATKEPMEDFKKhsivVSTAQYLMNqSIEDLLKTKKVKLVIFDECHHVVK 257 322333455555553332222235567777776515789999*************9999 PP CobA_CobO_BtuR 111 lglldveevlellkerpeelevv 133 + + ++v++ +k+ ++ +vv Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 258 KH--PFKRVMDSIKKLDKQPKVV 278 87..5567777777666666665 PP >> DEAD_2 DEAD_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.1 2.6e-05 0.013 118 159 .. 218 257 .. 211 269 .. 0.89 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 2.6e-05 GG-SEEEEECHHHCSHHHHHHHCT--CCCEEEEETTGGGHHH CS DEAD_2 118 kdadiillpYqyLldekireslkginlknsivilDEAhnied 159 k+ i++ + qyL++++i++ lk + k ++vi+DE h + + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 218 KKHSIVVSTAQYLMNQSIEDLLK--TKKVKLVIFDECHHVVK 257 6778******************8..7999*********9866 PP >> AAA ATPase family associated with various cellular activities (AAA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 2.2 2.4e-05 0.012 1 88 [. 143 263 .. 143 295 .. 0.65 2 ? -1.6 0.0 5.3 2.7e+03 37 72 .. 288 320 .. 261 327 .. 0.65 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 2.4e-05 EEEESSTTSSHHHHHHHHHHH.......HTCEEEEEETTTTCSS............... CS AAA 1 vllyGppGtGKTllakavake.......lgvefleisgsellsk............... 37 v+++ p GtGKT++ a+a+ +g+++l + ++ l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 143 VIIVAPTGTGKTTVGAAIARRilqeeakMGAKVLFVTQTKALATqqgkefeeqlsphkv 201 57899****************54444442455444444444422345566666777777 PP .....................STTHHHHHHHHHHHHHHHTS.SEEEEEETGGGCCHHHS CS AAA 38 .....................yvgesekkirelfkeakekakpsilfiDEidalaksrs 75 +v+ ++ +++ ++++ + +k + +++DE + ++k+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 202 vvwsgekatkepmedfkkhsiVVSTAQYLMNQSIEDLLKTKKVKLVIFDECHHVVKKH- 259 666666666678889888888666666667777777433333699*********9998. PP SCTTCHHHHHHHH CS AAA 76 gseseeeervvnq 88 ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 260 ---------PFKR 263 .........3333 PP == domain 2 score: -1.6 bits; conditional E-value: 5.3 SSTTHHHHHHHHHHHHHHHTS.SEEEEEETGGGCCH CS AAA 37 kyvgesekkirelfkeakekakpsilfiDEidalak 72 + + +++k++ l+k++++ ++ ++D +d+l + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 288 NSITGTARKVQTLMKNMEAR---IVKVVDHVDELRQ 320 45556677777777775433...5667777777744 PP >> PhoH PhoH-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.1 2.4e-05 0.012 7 47 .. 128 168 .. 124 252 .. 0.87 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 2.4e-05 PhoH 7 keQkeylealkkndivfaiGpaGtGKTylavalavealkkk 47 Q+e+++ +k v++++p+GtGKT + a+a + l+++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 128 PYQEELYKYAMKCGNVIIVAPTGTGKTTVGAAIARRILQEE 168 5699999999************************9999874 PP >> AAA_18 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.0 0.1 9e-05 0.046 1 82 [. 143 253 .. 143 286 .. 0.57 2 ? 0.1 0.0 1.8 9.3e+02 11 68 .. 497 554 .. 497 594 .. 0.72 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 9e-05 AAA_18 1 IlitGtpGsGKtTlakeLaerl.......gdvlrdlakeegleeevddk.....idtke 47 ++i+ ++G+GKtT++ ++a+r+ g+++ + +++ l + + ++ + +k Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 143 VIIVAPTGTGKTTVGAAIARRIlqeeakmGAKVLFVTQTKALATQQGKEfeeqlSPHKV 201 78999**************9976777777555544444444444444443333322233 PP AAA_18 48 skeldedkldelldkleenes.................elaegenviidghl 82 + e+ +e ++ +++++ + ++ + vi+d ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 202 VVWSGEKATKEPMEDFKKHSIvvstaqylmnqsiedllKTKKVKLVIFDECH 253 3333333333333333333334444444444444444455555555555555 PP == domain 2 score: 0.1 bits; conditional E-value: 1.8 AAA_18 11 KtTlakeL...aerlgdvlrdlakeegleeevddkidtkeskeldedkldelldkleen 66 K T+a++L +++ + l++++k+ ++++ ++ k+ ++l +d+++ + + +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 497 KKTVARLLevfENHPDEQLKNFLKNVKKCDGDVND---KQTERLLKDFREGHTNLVIAT 552 78899999444333377777777777777777777...777777777777666666665 PP AAA_18 67 es 68 ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 553 DK 554 55 PP >> SAM_1 SAM domain (Sterile alpha motif) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.9 0.0 4.1e-05 0.021 2 49 .. 22 77 .. 21 91 .. 0.77 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 4.1e-05 TTTHSSHHHHHHH.......TTSGGGHHHHHCTTSSHHHHTTSSHHHHHH.TT-SS CS SAM_1 2 ewsvedVgeWLes.......iglgqYadnFrageidgdaLlllteedLek.lgvtl 49 w+++dV+ WL+ l++ + +F ++i+g +Ll+lt+ +L l ++l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 22 AWNPQDVAAWLHGvlnvkakEPLEEVIAKFVVNQISGSHLLELTHYHLFTlLEIKL 77 6***********87554444445*********************999866566665 PP >> AAA_16 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.1 0.0 0.00053 0.27 24 57 .. 140 177 .. 135 335 .. 0.68 2 ? 1.1 0.0 0.62 3.2e+02 66 160 .. 458 556 .. 423 596 .. 0.59 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00053 AAA_16 24 pravlvvGpsGsGKSslvrelleslerd....ggl.vlr 57 +++v++v p G+GK+++ ++++++ ++ g + vl Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 140 CGNVIIVAPTGTGKTTVGAAIARRILQEeakmG-AkVLF 177 689**********************99966532.22333 PP == domain 2 score: 1.1 bits; conditional E-value: 0.62 AAA_16 66 a...plsal.rsllrellrqlldegeateldplaeklaaslgdde....akllvllpel 116 a s+ r llrellr l+ g++ + + ++ e a+ll++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 458 AkesAASPKeRVLLRELLRLLANVGGDPTKFR------GLIFATEkktvARLLEVFENH 510 24554555668999999999999988865433......344444422334444433332 PP AAA_16 117 ell......eaeaalapaaarnrlenalarllrrlaarrkplvlvlDdlq 160 + +++ +++ +++ e++l+++ r+ ++ lv+ D l+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 511 PDEqlknflKNVKKCDGDVNDKQTERLLKDF-REGHTN---LVIATDKLE 556 2223345565555555555553333444444.444444...888888887 PP >> AAA_17 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 0.00022 0.11 2 27 .. 143 175 .. 142 276 .. 0.69 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 0.00022 EEEEESTTSSHHHHHHHHHHHS.......TCEE CS AAA_17 2 iaitGppGsGKsTlakeLaerl.......glpv 27 ++i+ p+G+GK+T+ ++a+r g +v Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 143 VIIVAPTGTGKTTVGAAIARRIlqeeakmGAKV 175 78899***************9544444445554 PP >> NACHT NACHT domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.9 0.2 0.001 0.51 3 89 .. 143 251 .. 142 282 .. 0.65 2 ? 1.7 0.1 0.35 1.8e+02 71 134 .. 283 367 .. 227 388 .. 0.63 Alignments for each domain: == domain 1 score: 9.9 bits; conditional E-value: 0.001 NACHT 3 vilqGeaGsGKTtLlqklasawakgklpqdafklvFflslrelsrskna.....rslad 56 vi++ + G GKTt + +a+ + +++ + +a k++F+ + ++l ++ +s+ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 143 VIIVAPTGTGKTTVGAAIARRILQEEAKMGA-KVLFVTQTKALATQQGKefeeqLSPHK 200 6778899**********************97.********9999887663454444444 PP NACHT 57 lLfsqlpepaapvse..................vwivllelperlLlilDg 89 +++ + + +++ e + ll+ ++ L i+D Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 201 VVVWSGEKATKEPMEdfkkhsivvstaqylmnqSIEDLLKTKKVKLVIFDE 251 444444444444444666555444444444444444444444444455555 PP == domain 2 score: 1.7 bits; conditional E-value: 0.35 NACHT 71 e.............vwivllelperlLlilDglDelvsdlgq...........kekqpv 105 + v +++ + r++ ++D +Del++ + e+ +v Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 283 TpafansitgtarkVQTLMKNMEARIVKVVDHVDELRQATTEprfirvpvileGEEVQV 341 25555555556663556666678899999******999888877777777777677777 PP NACHT 106 rtlLselirkkllpeasllltvrpdalrd 134 ++ +s+ i +asl + ++p+++r Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 342 QKAISGAIGT---LQASLAVHLTPEESRT 367 7777777666...4555555555555555 PP >> Helicase_RecD Helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.2 0.0002 0.1 2 101 .. 145 254 .. 144 319 .. 0.68 2 ? -2.6 0.0 6.8 3.5e+03 10 54 .. 742 789 .. 737 815 .. 0.64 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 0.0002 Helicase_RecD 2 ltAdRGRGKSaalGlalaalvaegk....snilvtapskenvktlfeflekglealglk 56 + A G+GK+++ + ++ ++++e+ + ++vt ++ ++++ ef ++l+ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 145 IVAPTGTGKTTVGAAIARRILQEEAkmgaKVLFVTQTKALATQQGKEFE-EQLSPHKVV 202 8899*****9865555555555555888566677777777777777776.555444444 PP Helicase_RecD 57 e...eekkekaekaevrve..kqrieyiapdellklkeqa..dllvvDEAAa 101 e+ ++++ + +++ ++ +y+ +++ +l +++ +l++ DE+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 203 VwsgEKATKEPMEDFKKHSivVSTAQYLMNQSIEDLLKTKkvKLVIFDECHH 254 46763333333333333336677888887766655544333389999**865 PP == domain 2 score: -2.6 bits; conditional E-value: 6.8 Helicase_RecD 10 KSaalGlalaalvaegk.snilvtapskenv..ktlfeflekglealg 54 KS+a+ a+a+++++ n+ + p +++ +++fe ++ l++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 742 KSTAIDQACASALSALGsLNLSMATPASTSMtpRRIFEETAELLNDAR 789 899999888877765444777777776666522456766666666554 PP >> SRP54 SRP54-type protein, GTPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 1.4 0.00026 0.13 4 165 .. 143 300 .. 140 329 .. 0.68 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 0.00026 EEEEESTTSSHHHHHHHHHHHHHHT....T--EEEEEESTSSTTHHHHHHHHHHHHT.E CS SRP54 4 illvGlqGaGKTttlaKLaallkkk....gkkvllvaaDtfRaaAveQLktlaeklkvp 58 +++v ++G+GKTt a +a+++ ++ g kvl+v+ +a A++Q k + e+l + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 143 VIIVAPTGTGKTTVGAAIARRILQEeakmGAKVLFVT--QTKALATQQGKEFEEQLSPH 199 678999*************998877565566666666..57889999999999999844 PP EECSSSSSCHHHHHHHHHHHHHHTTSSEEEEEE--SSSSHHHHHHHHHHHHHHC..SSS CS SRP54 59 vikskkekdpaavakeavekakeekidvvlvDTaGrlqndkelmeelkkikevl..kpd 115 + + + +ke +e +k++ ++v Ta l n+ +e+l k+k+v d Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 200 KVVVW---SGEKATKEPMEDFKKH---SIVVSTAQYLMNQ--SIEDLLKTKKVKlvIFD 250 33333...4457788888888885...4888888776654..46777766666544667 PP EEEEEEEGGGGHHHHHHHHHHHHHTSTSEEEEESTTTSSCTHHHHHHHHH CS SRP54 116 evllvldatigqealkqakaFkeaveltgviltklDgdakgGaalsiaae 165 e v+ + ++ +k+ +++ ++ g+ t +++ G+a +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 251 ECHHVVKKHPFKRVMDSIKKLDKQPKVVGLTATPAFANSITGTARKVQTL 300 77777777777777777777777777777777766666666666666655 PP >> HsbA Hydrophobic surface binding protein A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.4 0.0 0.12 62 34 66 .. 80 112 .. 72 114 .. 0.91 2 ? 6.3 0.0 0.016 8.1 38 90 .. 335 389 .. 294 396 .. 0.87 Alignments for each domain: == domain 1 score: 3.4 bits; conditional E-value: 0.12 HsbA 34 alkilsdsnalvsaikqatadakasaplteees 66 a++i+ ++ +l+++i ++ +++ +p ++++s Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 80 AIDIEKAIEELKASISAGSGTLNEPKPSSVTDS 112 899***************************998 PP == domain 2 score: 6.3 bits; conditional E-value: 0.016 HsbA 38 lsdsnalvsaikqatadakas..aplteeeslsvleavqtlepsikdaldalisK 90 + ++ ++ +ai a+ +++as +lt+ees ++ + + ++p+ + ++a+ +K Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 335 EGEEVQVQKAISGAIGTLQASlaVHLTPEESRTLRSMKTFVTPEYEHLIKAIAKK 389 55677999************7669***********9999************9988 PP >> SAM_PNT Sterile alpha motif (SAM)/Pointed domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 0.00046 0.24 16 65 .. 19 73 .. 5 79 .. 0.83 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00046 SGGG--HHHHHHHHHHHHHH...TT-SS-HGGGC..TS-HHHHHHS-HHHHHHHS CS SAM_PNT 16 dPqeWtkedVleWlewavke...fdlakidfskf..dmsGkeLcsltkeefleaa 65 + + W +dV+ Wl+ +++ l+++ +++ ++sG +L++lt+ ++ +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 19 QIRAWNPQDVAAWLHGVLNVkakEPLEEVIAKFVvnQISGSHLLELTHYHLFTLL 73 5678**********9988765557789998888788***********99887765 PP >> UvrD-helicase UvrD/REP helicase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 3.2 0.00013 0.068 12 68 .. 139 209 .. 127 417 .. 0.71 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 0.00013 -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTG.GGEEEEESSHHHHHHHHHHHHH.. CS UvrD-helicase 12 lggpilveAsAGsGKTfvlaerilrlikeeeiep.drilvvTFTnkAaeElkeRiee.. 67 g+++++A G+GKT+v + i+r i +ee + ++l vT T++ a + ee Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 139 KCGNVIIVAPTGTGKTTV-GAAIARRILQEEAKMgAKVLFVTQTKALATQQGKEFEEql 196 5699************87.667777777777666156********98866555555544 PP ............H CS UvrD-helicase 68 ............a 68 a Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 197 sphkvvvwsgekA 209 4455555555541 PP >> RNA_helicase RNA helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.0 0.00098 0.5 2 85 .. 144 232 .. 143 249 .. 0.80 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00098 RNA_helicase 2 wlyGpsgeGKStlakeLakallkkl.......klkkkdsvysrnpeddfwdgYtgqevv 53 +++ p+g+GK+t+ +a+++l++ + ++ + + + ++f ++ + ++vv Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 144 IIVAPTGTGKTTVGAAIARRILQEEakmgakvLFVTQTKALATQQGKEFEEQLSPHKVV 202 688899****************7766778877666677777889999999999999999 PP RNA_helicase 54 vidDfgqvkdeenpsdlaelirlvsstpypln 85 v+ +++k+ +d++ +vs+++y +n Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194020042 203 VWSGEKATKEP--MEDFKKHSIVVSTAQYLMN 232 99988888766..4488888888888887666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (835 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 880 (0.0593352); expected 296.6 (0.02) Passed bias filter: 559 (0.0376913); expected 296.6 (0.02) Passed Vit filter: 81 (0.00546153); expected 14.8 (0.001) Passed Fwd filter: 29 (0.00195536); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 29 [number of targets reported over threshold] # CPU time: 0.48u 0.58s 00:00:01.06 Elapsed: 00:00:02.98 # Mc/sec: 731.42 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194025390 [L=677] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6e-33 113.7 0.1 6.9e-32 110.2 0.0 2.5 2 DEAD DEAD/DEAH box helicase 1.8e-22 78.9 0.1 4.3e-22 77.7 0.1 1.7 1 Helicase_C Helicase conserved C-terminal domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 110.2 0.0 9.4e-36 6.9e-32 1 165 [. 167 360 .. 167 364 .. 0.86 2 ? -0.1 0.0 0.072 5.3e+02 47 92 .. 416 457 .. 374 477 .. 0.66 Alignments for each domain: == domain 1 score: 110.2 bits; conditional E-value: 9.4e-36 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT............. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx............. RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq............. 45 tpiQ +aip+++ ++ vl++a+TGsGKT+af++p++ +l+e k + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194025390 167 TPIQIQAIPALMADREVLCCAPTGSGKTGAFVLPLLMHLKEPmK-Eisrkgkstkkpgi 224 89*************************************88744.369*********** PP EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 kalivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpg 104 +a+i++PtreLa qt+ ++q+ + + ++++ +++ + + +n +d++++Tp Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194025390 225 RAVIISPTRELALQTHVCISQLSEGKPFKIHFLSKATGDP----EHTKN-YDVLISTPL 278 *************************999999998866633....33455.********* PP HHHHHHHTTSSHC...................TTEEEEEEETHHHHHSTTTHHHHHHHH CS xxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 105 rlddlvstgklnl...................sqvrllVlDEadrllsqgfsdqlnqil 144 rl+ l++++ s v++lV+DEad+l ++gf q+++i+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194025390 279 RLVRLIQEQAXXXxxxxxxxxxaliqeqaidlSAVEYLVFDEADQLFEMGFLHQVDEII 337 *999999844422356667777777777777477************************* PP HHSHHCT..TSEEEEEESS-THH CS xxxxxxx..xxxxxxxxxxxxxx RF DEAD 145 qilcdgk..rlqvivlSATlpkd 165 +++ g+ r++ ++SATl + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194025390 338 AACSAGSsqRCKRALFSATLGPS 360 **9988865688*******9844 PP == domain 2 score: -0.1 bits; conditional E-value: 0.072 EEEEESSHHHHHHHHHHHHHHTTT...SSCCEEEETTTSEHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx RF DEAD 47 alivaPtreLaeqtlnnlkqfkky...pklrvlliiggvalardqlsvl 92 +li + t+e a q ++ + +++v +i+++ + a++++s Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194025390 416 VLIFVQTKERAVQLFH-------ElvyDNINVDIITSDRTRAQRDRSIE 457 4455555555555544.......44445678888888888664444433 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.7 0.1 5.8e-26 4.3e-22 4 78 .] 434 508 .. 431 508 .. 0.96 Alignments for each domain: == domain 1 score: 77.7 bits; conditional E-value: 5.8e-26 HHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSS CS Helicase_C 4 ekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlpr 62 +i+v i++++ + +r++ +e+ ++ + vl++t+ ++rG+d++++n+Vin+d+p Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194025390 434 VYDNINVDIITSDRTRAQRDRSIEKLRRLEVWVLICTDLMARGMDFKGCNLVINYDMPS 492 5679******************************************************* PP SHHHHHHHHTTSSTTT CS Helicase_C 63 svtsyiQriGRtgRag 78 s +yi+riGRtgRag Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194025390 493 SAVQYIHRIGRTGRAG 508 **************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (677 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1355 (0.0913627); expected 296.6 (0.02) Passed bias filter: 487 (0.0328366); expected 296.6 (0.02) Passed Vit filter: 40 (0.00269705); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.38u 0.51s 00:00:00.89 Elapsed: 00:00:02.23 # Mc/sec: 792.46 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 [L=411] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.4e-44 149.6 0.5 2e-43 147.8 0.0 1.9 2 DEAD DEAD/DEAH box helicase 7.2e-28 96.2 0.1 4.7e-27 93.6 0.1 2.1 2 Helicase_C Helicase conserved C-terminal domain 0.00026 20.6 0.4 0.00063 19.4 0.1 1.7 1 AAA_19 Part of AAA domain 0.00027 20.8 0.0 0.00071 19.4 0.0 1.7 1 ResIII Type III restriction enzyme, res subunit 0.0073 14.7 0.1 0.52 8.6 0.0 2.1 2 DUF1253 Protein of unknown function (DUF1253) 0.0098 15.4 0.1 0.054 13.0 0.0 2.0 2 AAA_30 AAA domain ------ inclusion threshold ------ 0.018 14.1 0.1 0.046 12.8 0.0 1.7 2 CMS1 U3-containing 90S pre-ribosomal complex subunit 0.019 14.1 0.0 0.049 12.7 0.0 1.7 2 tRNA-synt_1b tRNA synthetases class I (W and Y) 0.033 13.9 0.3 0.089 12.5 0.2 1.9 1 Flavi_DEAD Flavivirus DEAD domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 147.8 0.0 1.2e-46 2e-43 2 167 .. 63 226 .. 62 228 .. 0.96 2 ? -0.4 0.0 0.4 6.6e+02 64 102 .. 293 334 .. 264 350 .. 0.65 Alignments for each domain: == domain 1 score: 147.8 bits; conditional E-value: 1.2e-46 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeq 59 +iQ++ai +l+g+dv+++a+ G+GKT+ f+i v+q++ + ++++al++aPtreLa+q Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 63 AIQQRAIVPLLKGHDVIAQAQSGTGKTATFAIGVLQNIDMSlRRTQALLLAPTRELAQQ 121 69*************************************999999************** PP HHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 60 tlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnls 118 + + +k++++y+++ ++++igg++ + d+ + l+ng+++vvgTpgr+ d++++g l++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 122 IQKVVKNLGDYMNVICHACIGGTNVR-DDIKTLENGCHVVVGTPGRVYDMINRGALRTT 179 ***********99999********77.999999999*********************9* PP TEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 119 qvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvk 167 ++++++lDEad++ls gf+dq++++ + + + ++qv ++SAT+p dv Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 180 DMKMFILDEADEMLSRGFKDQIYDVFKNM--PPKIQVGLFSATMPGDVL 226 ****************************9..667***********7765 PP == domain 2 score: -0.4 bits; conditional E-value: 0.4 HHHHTTTSSCCEEEETTTSEHHHHHHHHH...TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF DEAD 64 lkqfkkypklrvlliiggvalardqlsvl...dngvdivvgT 102 l+q ++ ++ v +++g++++++++l + ++ +++++T Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 293 LTQKMQARDFTVSAMHGDMDQKERELIMKefrSGSSRVLITT 334 334444456789999999996645444437866666666666 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.5 0.0 0.69 1.1e+03 15 38 .. 218 241 .. 208 244 .. 0.80 2 ! 93.6 0.1 2.8e-30 4.7e-27 2 78 .] 296 372 .. 295 372 .. 0.96 Alignments for each domain: == domain 1 score: -0.5 bits; conditional E-value: 0.69 TTSTHHHHHHHHHHHHTTSSSEEE CS Helicase_C 15 gelpqnereeileqfnagkskvlv 38 + +++ + +ei ++f ++ ++lv Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 218 SATMPGDVLEITQRFMRDPIRILV 241 447888889999999999999998 PP == domain 2 score: 93.6 bits; conditional E-value: 2.8e-30 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSS CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl 60 +++++++ v ++hg++ q+ere i+++f++g+s+vl++t+ ++rGid+++v++Vin+dl Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 296 KMQARDFTVSAMHGDMDQKERELIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 354 56788999*************************************************** PP SSSHHHHHHHHTTSSTTT CS Helicase_C 61 prsvtsyiQriGRtgRag 78 p+++++y++riGR gR+g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 355 PTNKENYLHRIGRSGRFG 372 ****************87 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.4 0.1 3.8e-07 0.00063 6 62 .. 72 126 .. 67 151 .. 0.83 Alignments for each domain: == domain 1 score: 19.4 bits; conditional E-value: 3.8e-07 AAA_19 6 alagnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraakrlserl 62 l+g+ +++ ++ GtGKT+t a ++ + + + + ll+apt++ a+++++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 72 LLKGHDVIA-QAQSGTGKTATFAIGVLQNI--DMSLrRTQALLLAPTRELAQQIQKVV 126 455999999.********************..33455888**************9887 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.4 0.0 4.3e-07 0.00071 26 89 .. 76 144 .. 58 223 .. 0.64 Alignments for each domain: == domain 1 score: 19.4 bits; conditional E-value: 4.3e-07 SEEEEEESTTSTHHHHHH.....HHHHHH-S.-EEEEESSHHHHHHHHHHGGGGTGG.. CS ResIII 26 krglivmaTGtGKTlvaa.....sliarlar.kflflvprkelleqaleefkkfeskki 78 + ++ ++ GtGKT + a +++ l r ++l+l+p++el +q ++ k +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 76 HDVIAQAQSGTGKTATFAigvlqNIDMSLRRtQALLLAPTRELAQQIQKVV-KNLGDYM 133 57789999**********7777556666666****************9877.5556666 PP .GEEEESSS-B CS ResIII 79 efekkniavak 89 ++ ++ +++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 134 NVICHACIGGT 144 66666664333 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.0 0.0 0.008 13 29 57 .. 98 126 .. 74 138 .. 0.78 2 ! 8.6 0.0 0.00031 0.52 315 388 .. 292 363 .. 264 374 .. 0.84 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 0.008 DUF1253 29 elrdqgftrpkvLillpfrniakevvdll 57 + d ++ r++ L+l p+r+ a+++ + + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 98 QNIDMSLRRTQALLLAPTRELAQQIQKVV 126 55799*****************8764433 PP == domain 2 score: 8.6 bits; conditional E-value: 0.00031 DUF1253 315 rirnylkkekisFaaiseytsekkisrarklFkkgrkkiLLvteRlhfyrRykikgvkk 373 +++ +++++++ a++ ++k+ + + k F +g+ ++L++t+ l r + +++v+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 292 WLTQKMQARDFTVSAMHGDMDQKERELIMKEFRSGSSRVLITTDLLA--RGIDVQQVSL 348 56778889999999999999***********************9776..89******** PP DUF1253 374 vifyslPefpefYse 388 vi y lP+++e Y Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 349 VINYDLPTNKENYLH 363 *********998865 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.0 0.0 3.3e-05 0.054 5 105 .. 64 192 .. 61 203 .. 0.59 2 ? -0.8 0.0 0.57 9.3e+02 47 85 .. 278 316 .. 265 333 .. 0.79 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 3.3e-05 AAA_30 5 eQkeaveavltsgdrvavvqGpAGtGKttvlka..lrealea.agkrviglAptgkaak 60 Q++a+ +l+ +d ++ q+ GtGKt + + l+++ + + + ++lApt + a+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 64 IQQRAIVPLLKGHD--VIAQAQSGTGKTATFAIgvLQNIDMSlRRTQALLLAPTRELAQ 120 58888888888887..88899******987654314444333235899*********** PP AAA_30 61 vLeee..............lgiearTiasllerldkaeaegrke............... 90 ++++ + i +++++ +++l e Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 121 QIQKVvknlgdymnvichaC-IGGTNVRDDIKTL---------Engchvvvgtpgrvyd 169 **998333333333333320.2222222222222.........0333334455555666 PP AAA_30 91 ........ldaktllvvDEAgmv 105 +++ +++++DEA + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 170 minrgalrTTDMKMFILDEADEM 192 65555544555557888887655 PP == domain 2 score: -0.8 bits; conditional E-value: 0.57 AAA_30 47 krviglAptgkaakvLeeelgiearTiasllerldkaea 85 + i+++ t + ++ L+++++++ T++++ ++ d++e+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 278 TQAIIYSNTRRKVDWLTQKMQARDFTVSAMHGDMDQKER 316 567889999999999999999999999999999888654 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 2.8e-05 0.046 166 209 .. 146 188 .. 111 195 .. 0.89 2 ? -3.5 0.0 2.6 4.2e+03 45 67 .. 276 298 .. 259 305 .. 0.65 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 2.8e-05 CMS1 166 lkesitylkksrigiavGtpgRiadLleeeslsvdeLkrivlDa 209 ++++i++l + + vGtpgR+ d+++ ++l ++k +lD Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 146 VRDDIKTLE-NGCHVVVGTPGRVYDMINRGALRTTDMKMFILDE 188 567777775.456799**************************96 PP == domain 2 score: -3.5 bits; conditional E-value: 2.6 CMS1 45 glneavarmdpelLadylasklk 67 +++a++ + + +d+l++k++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 276 TITQAIIYSNTRRKVDWLTQKMQ 298 37888888888888888888765 PP >> tRNA-synt_1b tRNA synthetases class I (W and Y) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.0 1.1 1.9e+03 219 245 .. 227 263 .. 222 308 .. 0.56 2 ? 12.7 0.0 3e-05 0.049 48 119 .. 306 382 .. 289 398 .. 0.73 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 1.1 HHHHHSHCSTTC.SHHHHHHHHHCHHH.........C CS tRNA-synt_1b 219 kkiqkaitdsde.evrkllklktelsn.........e 245 + q++++d+ + v++++ ++ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 227 EITQRFMRDPIRiLVKRDELTLEGIRQfyiavekeeW 263 6667788888887777777777777773333333330 PP == domain 2 score: 12.7 bits; conditional E-value: 3e-05 HCTTTTT.....SSHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEECHHHHTCH.HHHHH CS tRNA-synt_1b 48 Aligdps....kaeerklrkreeelenakaqlakgldpekaeivlqsewlehl.elael 101 A+ gd++ + ++++r+ + ++ + +la+g+d +++++v++++ + ++ +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 306 AMHGDMDqkerELIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNKeNYLHR 364 666666620022223344444444444489*******************9877589999 PP HHHHCTCHCHHHHHHHHH CS tRNA-synt_1b 102 lrdlgklgslnrmlqfks 119 + + g++g+ +++f + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 365 IGRSGRFGRKGVAINFVT 382 999999988777777665 PP >> Flavi_DEAD Flavivirus DEAD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.2 5.4e-05 0.089 7 104 .. 78 189 .. 72 230 .. 0.62 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 5.4e-05 EEEE--TTS-TTTTHHHHHHHHH..HHTT--EEEEESSHHHHHHHHHHTTTS-..EEE- CS Flavi_DEAD 7 tvldlhPGaGktrkvlpelvkea..ierrlrtlvLaPtrvvlaemeealkgle..vryk 61 + ++ G+Gkt + ++++ rr ++l+LaPtr ++ +++ +k+l ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 78 VIAQAQSGTGKTATFAIGVLQNIdmSLRRTQALLLAPTRELAQQIQKVVKNLGdyMNVI 136 5667889******9999888864115578899*************99998764123333 PP XXXXX.XXXX---S..EEEEEHHHH.....HHHHHH..T------SEEEEETT CS Flavi_DEAD 62 tsavk.eektgrel..vdvmchatf.....tkrlls..pvrkknyeliimDea 104 +a+ +++ +++ ++ ch + +++ r+++++++i+Dea Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194008410 137 CHACIgGTNVRDDIktLENGCHVVVgtpgrVYDMINrgALRTTDMKMFILDEA 189 33332022223333113445665432111123333333455666666666666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (411 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 669 (0.0451082); expected 296.6 (0.02) Passed bias filter: 565 (0.0380959); expected 296.6 (0.02) Passed Vit filter: 34 (0.0022925); expected 14.8 (0.001) Passed Fwd filter: 9 (0.000606837); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 0.27u 0.56s 00:00:00.83 Elapsed: 00:00:02.37 # Mc/sec: 452.68 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194012542 [L=358] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-18 66.9 0.0 2.2e-18 66.4 0.0 1.3 1 Ribonucleas_3_3 Ribonuclease-III-like 1.7e-13 50.9 0.0 6.3e-13 49.1 0.0 2.0 2 Ribonuclease_3 Ribonuclease III domain 0.0029 18.1 0.0 0.0058 17.1 0.0 1.5 1 dsrm Double-stranded RNA binding motif Domain annotation for each model (and alignments): >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.4 0.0 4.5e-22 2.2e-18 3 127 .. 104 244 .. 102 245 .. 0.79 Alignments for each domain: == domain 1 score: 66.4 bits; conditional E-value: 4.5e-22 Ribonucleas_3_3 3 elllqaltHkSyangrk.......gyN...erLefLGdavLelvvseyllekakk.deg 50 +lll+al+H Sy +++ ++N + Le +Gd++L+++v yl++ ++ g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194012542 104 DLLLHALVHPSYLQENVpsmdlgeSHNqlgQMLELIGDSILSFAVGSYLFQTNHTlTRG 162 799*********76543222233234422279******************996653799 PP Ribonucleas_3_3 51 eltkklaslvseeslaeiake.lgLgkvlrl....rkgeeetessgrekvladaleAli 104 +l++ +a +v++++l +++++ l+++++l++ + +es+ +++++e li Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194012542 163 QLSQARAMIVCNNALYRFGRDvLQIDRLLLFsrkiLARVNVLESKIFPDTVSNTVEMLI 221 *******************983589999988755423344467777777999******* PP Ribonucleas_3_3 105 GAiyldkGaeeakefveekilkd 127 GA+yld+G e+a +f++e +l++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194012542 222 GALYLDRGQEAALRFIMEFMLPN 244 ******************99976 PP >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.0 1.5 7.3e+03 61 71 .. 61 75 .. 38 104 .. 0.59 2 ! 49.1 0.0 1.3e-16 6.3e-13 2 114 .] 135 229 .. 134 229 .. 0.84 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 1.5 HHHHSTT--T....S CS Ribonuclease_3 61 efdppknwlp....l 71 f p ++w++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194012542 61 LFPPNDSWRNrcpkI 75 456666666633331 PP == domain 2 score: 49.1 bits; conditional E-value: 1.3e-16 HHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHT.TTCHCHHBH CS Ribonuclease_3 2 rLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakk.lglpsylre 59 Le +GD++l++a+ +ylf+t+ l g+ls++r+ +v+n++l+r++++ l+++++l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194012542 135 MLELIGDSILSFAVGSYLFQTNHTLTRGQLSQARAMIVCNNALYRFGRDvLQIDRLLL- 192 69**********************************************8455666666. PP HHHHHSTT--TSSSSS.SC................TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 60 sefdppknwlplnkdlangkgrqsisydlk.eqsiadkvladvvEAliGaiyldsg 114 +++++l + + e++i + + + +vE liGa+yld g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194012542 193 ----FSRKILA---------------RVNVlESKIFPDTVSNTVEMLIGALYLDRG 229 ....3333332...............334468899******************987 PP >> dsrm Double-stranded RNA binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 0.0 1.2e-06 0.0058 8 67 .] 264 326 .. 258 326 .. 0.69 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 1.2e-06 HHHHTT.SCCEEEEEEEESSTSSSE.EEEEEEEE..TTEEEEEEEESSHHHHHHHHHHH CS dsrm 8 lcqkkg.kppnyeyvseegpphslk.kFtvtvkv..ngklygtGvgssKKeAeqlAAek 62 lcqkk +p+y+ + + ++ + ++++++ + k +g+G+g+s eA+ +AA++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194012542 264 LCQKKLgSTPQYVRRFLTREEDG-MsWCKIEIRLqnDPKPIGYGEGRSIIEAKENAAKD 321 67776665555555555555554.314444555575559999***************** PP HHHHH CS dsrm 63 ALqkL 67 AL L Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194012542 322 ALDRL 326 **865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (358 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 257 (0.0173286); expected 296.6 (0.02) Passed bias filter: 252 (0.0169914); expected 296.6 (0.02) Passed Vit filter: 24 (0.00161823); expected 14.8 (0.001) Passed Fwd filter: 3 (0.000202279); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.24u 0.33s 00:00:00.57 Elapsed: 00:00:01.26 # Mc/sec: 741.67 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193985282 [L=768] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-43 147.0 0.0 2.8e-41 140.8 0.0 2.9 2 DEAD DEAD/DEAH box helicase 7.2e-23 80.2 0.1 1.9e-21 75.7 0.1 2.5 2 Helicase_C Helicase conserved C-terminal domain 0.00086 18.1 0.0 0.0017 17.2 0.0 1.4 1 SNF2_N SNF2 family N-terminal domain ------ inclusion threshold ------ 0.044 13.3 0.0 0.12 11.9 0.0 1.6 1 DUF460 Protein of unknown function (DUF460) 0.1 12.7 0.3 0.21 11.7 0.2 1.4 1 Collagen_bind Collagen binding domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 140.8 0.0 9.4e-45 2.8e-41 1 151 [. 222 377 .. 222 448 .. 0.78 2 ? 1.9 0.0 0.045 1.3e+02 45 102 .. 484 555 .. 457 571 .. 0.74 Alignments for each domain: == domain 1 score: 140.8 bits; conditional E-value: 9.4e-45 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT.......EEEEEES CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq.......kalivaP 52 tpiQ +a+p il+g+dv++ a+TGsGKT+afl p++ +++++ ++ +i aP Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193985282 222 TPIQVQALPVILSGRDVIGLAKTGSGKTAAFLFPLLVHIMDQ-PElskgdgpIGIICAP 279 89**********************************999875.23679***9******* PP SHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 53 treLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvs 111 treLa+q+++++k+f+k ++rv++++gg + + +q + l++g++i+v+Tpgrl+d+++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193985282 280 TRELAQQIHSEAKKFAKGYGIRVCAVYGGAS-KFEQFKELRQGAEIIVATPGRLIDMIK 337 ******************************9.559999**999**************** PP TTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 112 tgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgk 151 ++ ++ +v +lVlDEadr+ ++gf++q+++i+ +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193985282 338 MKGTKMNRVTYLVLDEADRMFDMGFEPQVRSIVGQIRPDR 377 97779999***********************999975443 PP == domain 2 score: 1.9 bits; conditional E-value: 0.045 T...............EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHH CS x...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 45 q...............kalivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardq 88 + +l+ + t++ ae+ ++nl q + + +++i+g++++ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193985282 484 KwnwvtsrlrdlvvlgTVLVFVSTKQGAEELADNLHQHG----FTAAAIHGDKDQW-ER 537 155555566666666678899999999999999998877....5799999999955.33 PP HHHH....TT.-SEEEEE CS xxxx....xxxxxxxxxx RF DEAD 89 lsvl....dngvdivvgT 102 ++ + +++ i+++T Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193985282 538 SELIkmlkEQTLPILIAT 555 333356887778999988 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.7 0.0 0.076 2.2e+02 2 29 .. 294 321 .. 293 329 .. 0.80 2 ! 75.7 0.1 6.4e-25 1.9e-21 3 78 .] 518 593 .. 516 593 .. 0.98 Alignments for each domain: == domain 1 score: 1.7 bits; conditional E-value: 0.076 HHHHTTS-EEEESTTSTHHHHHHHHHHH CS Helicase_C 2 llekkgikvailhgelpqnereeileqf 29 + + +gi+v++++g+ ++ e+ + l+q Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193985282 294 FAKGYGIRVCAVYGGASKFEQFKELRQG 321 56779*********99999998777765 PP == domain 2 score: 75.7 bits; conditional E-value: 6.4e-25 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlp 61 l + g+ +a++hg+ q er e ++ ++++ ++l+at+va+rG+d++ +++V+nfd+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193985282 518 LHQHGFTAAAIHGDKDQWERSELIKMLKEQTLPILIATDVAARGLDIKTIKTVVNFDVA 576 7899******************************************************* PP SSHHHHHHHHTTSSTTT CS Helicase_C 62 rsvtsyiQriGRtgRag 78 r+ +s ++riGRtgRag Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193985282 577 RDIDSHVHRIGRTGRAG 593 ***************97 PP >> SNF2_N SNF2 family N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.0 5.7e-07 0.0017 34 146 .. 244 357 .. 228 373 .. 0.85 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 5.7e-07 TTSSCCHHHHHHHHHHCCCHS-........EEEE--T.TTHHHHHHHHHHCS.T.T--E CS xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF SNF2_N 34 mGlGKTvqvialilllkeeaerkkkks...tLivvPs.slldqWvneierhvspsalrv 88 +G GKT + +l+ + +++ +k + +i +P+ +l++q +e +++++ +rv Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193985282 244 TGSGKTAAFLFPLLVHIMDQPELSKGDgpiGIICAPTrELAQQIHSEAKKFAKGYGIRV 302 79999*99999888666666666655579889999**9********************* PP EE--HCCCHHHTT-SSSTT-SEEEE-CCHHH..TSTCTCHHHHTSEEEEEEETTCCGG CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SNF2_N 89 lvyggqkkakksaaklladydvvittydvlralrekkrksvlkkvkwkrvvlDEahrl 146 ++++g ++ +++++l + +++++ t +l + + k ++ ++vlDEa r+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193985282 303 CAVYGGASKFEQFKELRQGAEIIVATPGRLI---DMIKMKGTKMNRVTYLVLDEADRM 357 9988888899*********************...44444455556799*******886 PP >> DUF460 Protein of unknown function (DUF460) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.0 3.9e-05 0.12 62 100 .. 534 572 .. 526 577 .. 0.87 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 3.9e-05 DUF460 62 eldrsevieliselGkpvivAtDvspapetvkklaaslk 100 +++rse+i++++e p+++AtDv+ +k ++ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193985282 534 QWERSELIKMLKEQTLPILIATDVAARGLDIKTIKTVVN 572 6899*********************99888888887665 PP >> Collagen_bind Collagen binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.2 7e-05 0.21 71 116 .. 710 756 .. 691 765 .. 0.78 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 7e-05 HHHSTT-EEEEETTTTEEEEEE-H.HTTEEEEEEEEEEES-TT-S.E CS Collagen_bind 71 lseapgvksideatdngfkvtfgg.tidnavkisYktkitdsgkkqs 116 s ++ v ++++a ++ f+ +f++ +++++ +sY t++ ++ ++q+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193985282 710 SSRQEAVGDLKQAMTSQFQSRFRKaSTQEPTAVSYHTSTQEQPQPQQ 756 34899999****************99**************9998873 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (768 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 654 (0.0440968); expected 296.6 (0.02) Passed bias filter: 426 (0.0287236); expected 296.6 (0.02) Passed Vit filter: 37 (0.00249477); expected 14.8 (0.001) Passed Fwd filter: 6 (0.000404558); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.36u 0.44s 00:00:00.80 Elapsed: 00:00:02.00 # Mc/sec: 1002.37 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 [L=485] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-45 153.6 0.1 3.1e-44 150.4 0.0 2.6 3 DEAD DEAD/DEAH box helicase 4.6e-26 90.5 0.1 1e-25 89.4 0.0 1.6 1 Helicase_C Helicase conserved C-terminal domain 0.0003 20.6 0.5 0.002 17.9 0.0 2.6 2 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.014 15.1 0.0 0.04 13.6 0.0 1.7 1 DUF2103 Predicted metal-binding protein (DUF2103) 0.017 14.8 0.1 0.15 11.8 0.1 2.6 3 AAA_19 Part of AAA domain 0.051 11.9 0.9 1.2 7.4 0.2 3.1 3 DUF1253 Protein of unknown function (DUF1253) Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 150.4 0.0 1.3e-47 3.1e-44 1 163 [. 74 236 .. 74 243 .. 0.94 2 ? -0.5 0.0 0.28 7e+02 67 133 .. 312 328 .. 237 352 .. 0.49 3 ? -1.4 0.0 0.55 1.4e+03 94 132 .. 390 428 .. 377 448 .. 0.73 Alignments for each domain: == domain 1 score: 150.4 bits; conditional E-value: 1.3e-47 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT...EEEEEESSHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq...kalivaPtreL 56 tp+Q+++ip++l g++v+++aeTGsGKT+af++p++q+l e ali++PtreL Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 74 TPVQKACIPQVLLGKNVVGNAETGSGKTAAFALPILQKLSED--PfgiFALILTPTREL 130 79**********99*************************985..3456*********** PP HHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 57 aeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkl 115 a+q+ ++l+ f+++ +lr +l+igg l+ dq+++l +++++v++Tpgrl+d++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 131 AHQISEQLTVFGSKIGLRHTLVIGGLGLQ-DQARKLARKPHVVIATPGRLVDHLQNCPT 188 ***************************99.******999*****************666 PP .HCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-T CS .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 116 .nlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlp 163 nl +++++V+DEadrll ++++ ++qi ++l ++++q++++SAT++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 189 fNLDRIKFFVMDEADRLLT-EQGRFVEQICSHLPPLSQRQTLFFSATMT 236 6******************.99***********9999***********8 PP == domain 2 score: -0.5 bits; conditional E-value: 0.28 HTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 67 fkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVl 125 ++k+ +r+ V+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 312 MMKE-------------------------------------------------LRIAVV 321 2222.................................................333333 PP ETHHHHHS CS xxxxxxxx RF DEAD 126 DEadrlls 133 E ++lls Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 322 -ELHGLLS 328 .3333333 PP == domain 3 score: -1.4 bits; conditional E-value: 0.55 T.-SEEEEEHHHHHHHHHTTSSHCTT.EEEEEEETHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF DEAD 94 ngvdivvgTpgrlddlvstgklnlsq.vrllVlDEadrll 132 g+ i +Tp+ ld + ++ +++l + ++ + +DE +l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 390 AGTAITFVTPNDLDLM-QHIESTLNKeIEEMQMDEESVML 428 5688999999998765.44566666667777777766665 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 89.4 0.0 4e-29 1e-25 3 78 .] 313 388 .. 311 388 .. 0.96 Alignments for each domain: == domain 1 score: 89.4 bits; conditional E-value: 4e-29 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlp 61 +++ i v+ lhg l+q+er l++f++ + k+l+at++a+rG+d+p+v++Vinfd+p Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 313 MKELRIAVVELHGLLSQRERITNLQSFRSEEAKILIATDIAGRGLDIPSVKYVINFDVP 371 5677899**************************************************** PP SSHHHHHHHHTTSSTTT CS Helicase_C 62 rsvtsyiQriGRtgRag 78 +s ++y++r+GRt+Rag Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 372 FSAEEYVHRVGRTARAG 388 ***************97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.4 2 5e+03 80 90 .. 28 38 .. 8 63 .. 0.45 2 ! 17.9 0.0 8.1e-07 0.002 26 182 .. 88 235 .. 70 237 .. 0.73 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 2 GEEEESSS-B- CS ResIII 80 fekkniavakk 90 +++k+ ++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 28 VPSKSSGPEER 38 22222221111 PP == domain 2 score: 17.9 bits; conditional E-value: 8.1e-07 SEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG.. CS ResIII 26 krglivmaTGtGKTlvaasliarlar......kflflvprkelleqaleefkkfeskki 78 k+++ +++TG+GKT a i++ ++ +l+l p++el q e+++ f sk Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 88 KNVVGNAETGSGKTAAFALPILQKLSedpfgiFALILTPTRELAHQISEQLTVFGSKIG 146 55666899*******999755555555***9999*****************66666533 PP .GEEEESSS-B---SEEEEEHHHHH.................................. CS ResIII 79 efekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendesks 137 ++ + ++d+ +k + + ++++t +l l++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 147 LR-----------HTLVIGGLGLQDQARKLARKPHVVIATPGRLVDHLQN--------- 185 33...........3334455666666667777888888899999888774......... PP HTHHHHTTT-SEEEEETGGGTTSTT.THHHHH.......---SEEEEEESS- CS ResIII 138 eslealldefdviiiDEaHrlsakkkyreile.......fkkafllglTATp 182 ++ld+ +++++DEa rl ++ r + + +++ l ++AT Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 186 -CPTFNLDRIKFFVMDEADRLLTEQ-GRFVEQicshlppLSQRQTLFFSATM 235 .456788888899999999998888.44444455588887788888888885 PP >> DUF2103 Predicted metal-binding protein (DUF2103) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 1.6e-05 0.04 7 80 .. 143 216 .. 138 217 .. 0.86 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 1.6e-05 DUF2103 7 eklggsHstliggreGkklikkiakhpevKkviPgvisakgsrsrgg..leaKvtrade 63 k+g +H+ +igg + +k+a++p+v +Pg++ + ++ ++ ++K + de Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 143 SKIGLRHTLVIGGLGLQDQARKLARKPHVVIATPGRLVDHLQNCPTFnlDRIKFFVMDE 201 799***********8899******************99888887776545889999999 PP DUF2103 64 eGnlrlllrdgssvQev 80 rll ++g+ v ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 202 AD--RLLTEQGRFVEQI 216 88..9999999888765 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.1 6.1e-05 0.15 9 63 .. 87 144 .. 81 177 .. 0.83 2 ? -3.8 0.0 4.4 1.1e+04 47 58 .. 205 216 .. 204 224 .. 0.79 3 ? -1.8 0.0 1.1 2.6e+03 28 52 .. 378 401 .. 377 422 .. 0.72 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 6.1e-05 AAA_19 9 gnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraakrlserl.... 62 g +++ ++ G+GKT++ a i + l e+p g l+++pt++ a ++se l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 87 GKNVVG-NAETGSGKTAAFALPILQKL--SEDPfGIFALILTPTRELAHQISEQLtvfg 142 567777.9999*****88888888888..789999999***************996554 PP AAA_19 63 .l 63 Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 143 sK 144 42 PP == domain 2 score: -3.8 bits; conditional E-value: 4.4 AAA_19 47 lvaptgraakrl 58 l++ +gr+++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 205 LLTEQGRFVEQI 216 678899999998 PP == domain 3 score: -1.8 bits; conditional E-value: 1.1 AAA_19 28 aaiiaallaarekp.grsvllvaptg 52 ++++ + + r+ g + +v+p++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 378 VHRVGRTA--RAGRaGTAITFVTPND 401 57777777..4455566688888876 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.2 0.0 0.2 5e+02 41 58 .. 122 139 .. 120 145 .. 0.88 2 ? 7.4 0.2 0.00049 1.2 215 358 .. 225 351 .. 213 389 .. 0.72 3 ? -2.0 0.0 0.35 8.6e+02 314 362 .. 428 475 .. 425 477 .. 0.82 Alignments for each domain: == domain 1 score: -1.2 bits; conditional E-value: 0.2 DUF1253 41 Lillpfrniakevvdlli 58 Lil+p+r+ a+++ ++l+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 122 LILTPTRELAHQISEQLT 139 9***********999886 PP == domain 2 score: 7.4 bits; conditional E-value: 0.00049 DUF1253 215 yRQtiilssietpeinslfnsklaNlrgkvklkkkekkigvlekvvlkvrqvFerieae 273 RQt+++s+++tp+ +sl+++ ++ + ++ +++ + +++ k+ q + + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 225 QRQTLFFSATMTPSHRSLIEQMVSEMPPFIYQQNSDQ-----FTITAKLDQKYMLVP-- 276 5999999999999999999997777766666555554.....456677777776643.. PP DUF1253 274 silkeedarlkfFtknvlpkltkeskekgvlifipsYfdyvrirnylkkekisFaaise 332 ++ +++ l +++ +++ + +++f+++ + ++k+ +i ++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 277 --EDLKECYLVEYIS--------KTRPSSTIVFVSTCRGAALLGRMMKELRIAVVELHG 325 ..3333333222222........233566788888888888888888888888888888 PP DUF1253 333 ytsekkisrarklFkkgrkkiLLvte 358 s+++ + + F ++++kiL+ t+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 326 LLSQRERITNLQSFRSEEAKILIATD 351 88888888888888888888888886 PP == domain 3 score: -2.0 bits; conditional E-value: 0.35 DUF1253 314 vrirnylkkekisFaaiseytsekkisrarklFkkgrkkiLLvteRlhf 362 +r+ +lk+++i ++++e +s ++ r++ + +r+++ L++e +h+ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0194022506 428 LRVPRVLKAKHIGQVGVDEDSSGNHRGIKRRQVQ-EREQVRLLSEATHY 475 799999***************9999988888865.56677777777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (485 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 968 (0.0652687); expected 296.6 (0.02) Passed bias filter: 590 (0.0397815); expected 296.6 (0.02) Passed Vit filter: 84 (0.00566381); expected 14.8 (0.001) Passed Fwd filter: 9 (0.000606837); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.32u 0.56s 00:00:00.88 Elapsed: 00:00:02.58 # Mc/sec: 490.70 // Query: Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 [L=523] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-38 131.6 0.3 5.8e-38 130.0 0.1 1.8 2 DEAD DEAD/DEAH box helicase 9.7e-29 99.0 0.1 2.7e-28 97.6 0.1 1.8 1 Helicase_C Helicase conserved C-terminal domain 0.0001 22.2 0.0 0.0011 18.8 0.0 2.3 2 ResIII Type III restriction enzyme, res subunit 0.00048 20.3 0.0 0.0013 18.9 0.0 1.8 1 AAA ATPase family associated with various cellular ac 0.0011 18.6 0.1 0.0058 16.3 0.0 2.1 2 AAA_19 Part of AAA domain ------ inclusion threshold ------ 0.015 15.4 0.1 0.047 13.8 0.0 1.7 1 AAA_22 AAA domain 0.022 13.1 0.0 0.11 10.8 0.0 2.0 2 DUF1253 Protein of unknown function (DUF1253) Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 130.0 0.1 2.7e-41 5.8e-38 2 166 .. 68 230 .. 67 233 .. 0.94 2 ? -1.6 0.0 0.73 1.5e+03 47 102 .. 285 339 .. 263 351 .. 0.66 Alignments for each domain: == domain 1 score: 130.0 bits; conditional E-value: 2.7e-41 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeq 59 +iQ++ai +++g+dv+++a+ G+GKT +++++++q++ ++ ++ +al++ PtreLa+q Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 68 AIQQRAIIPMVSGRDVIAQAQSGTGKTSMMCMAILQNIDTQlRECQALVLNPTRELAQQ 126 6899999999999*************************9999989************** PP HHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 60 tlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnls 118 t + l +++ ++++++ ++gg++ ++ ++l+ngv+iv gTpgr++d++++++l++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 127 TQKVLLALGEFMSIQAHSCVGGKSVG-EDIRKLENGVHIVSGTPGRVHDMIRRRTLRTR 184 ************************99.788899999*****************999999 PP TEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 119 qvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdv 166 ++++l lDEad++l gf++q++++ + l + qvi++SATlp++v Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 185 SIKVLLLDEADEMLGRGFKEQIYDVYRYL--PPATQVILISATLPHEV 230 ****************************9..555***********766 PP == domain 2 score: -1.6 bits; conditional E-value: 0.73 EEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxx RF DEAD 47 alivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvl....dngvdivvg 101 a+i + tr + ++++q + v +++g+++++ ++++ + ++ +++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 285 AVIFCNTRRKVDWLTDKMRQAN----FTVSAMHGDMPQK-EREEIMkefrGGNSRVLIT 338 5555555555555555555544....5788999999865.3333334676555666666 PP E CS x RF DEAD 102 T 102 T Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 339 T 339 6 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 97.6 0.1 1.3e-31 2.7e-28 2 78 .] 301 377 .. 300 377 .. 0.97 Alignments for each domain: == domain 1 score: 97.6 bits; conditional E-value: 1.3e-31 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSS CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl 60 ++++ ++ v ++hg++pq+ereei+++f+ g+s+vl++t+v +rGid+++v++Vin+dl Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 301 KMRQANFTVSAMHGDMPQKEREEIMKEFRGGNSRVLITTDVWARGIDVQQVSLVINYDL 359 67899****************************************************** PP SSSHHHHHHHHTTSSTTT CS Helicase_C 61 prsvtsyiQriGRtgRag 78 p +++ yi+riGR gR+g Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 360 PNNRELYIHRIGRSGRFG 377 ****************87 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.8 0.0 5.3e-07 0.0011 27 70 .. 82 131 .. 65 228 .. 0.77 2 ? 0.8 0.0 0.18 3.7e+02 95 137 .. 438 481 .. 414 497 .. 0.74 Alignments for each domain: == domain 1 score: 18.8 bits; conditional E-value: 5.3e-07 EEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHG CS ResIII 27 rglivmaTGtGKTlvaasliarlar......kflflvprkelleqaleef 70 ++ ++ GtGKT +++ +i++ + ++l+l p++el +q+++ + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 82 DVIAQAQSGTGKTSMMCMAILQNIDtqlrecQALVLNPTRELAQQTQKVL 131 56788999*********5444444456667****************9877 PP == domain 2 score: 0.8 bits; conditional E-value: 0.18 EEEEHHHHH................................... CS ResIII 95 geeqkkskdkeekkkkdkeiilttiqklhkaleeeeend.esks 137 + ++k++ e + ++d++ +t i kl++ ee+++ + + + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 438 IVKSKNIVLAEIIIETDTNPTFTHIGKLKNIYEEGKKGQyMYAE 481 4566677777888899999************9999887755554 PP >> AAA ATPase family associated with various cellular activities (AAA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.9 0.0 6e-07 0.0013 6 74 .. 88 201 .. 83 232 .. 0.78 Alignments for each domain: == domain 1 score: 18.9 bits; conditional E-value: 6e-07 STTSSHHH.HHHHHHHHHTCE............................EEEEETTTTC CS AAA 6 ppGtGKTl.lakavakelgve............................fleisgsell 35 GtGKT+ ++ a+ ++++++ f++i++++++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 88 QSGTGKTSmMCMAILQNIDTQlrecqalvlnptrelaqqtqkvllalgeFMSIQAHSCV 146 57****9626899****865544556666666677777777777888889999999999 PP .SS..............STTHHHHHHHHHHHHHHHTS...SEEEEEETGGGCCHHH CS AAA 36 .sk..............yvgesekkirelfkeakeka..kpsilfiDEidalaksr 74 k +v+ ++ ++++++++ ++ + + ++l++DE+d++ ++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 147 gGKsvgedirklengvhIVSGTPGRVHDMIRR-RTLRtrSIKVLLLDEADEMLGRG 201 6669************99999*********99.44444457***********9987 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 2.8e-06 0.0058 7 63 .. 78 133 .. 72 150 .. 0.79 2 ? -1.2 0.0 0.77 1.6e+03 6 20 .. 157 170 .. 151 171 .. 0.83 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 2.8e-06 AAA_19 7 lagnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraakrlserl.l 63 ++g+ +++ ++ GtGKT + +i + +++ + + l+++pt++ a++ +++l + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 78 VSGRDVIA-QAQSGTGKTSMMCMAILQNIDT--QLrECQALVLNPTRELAQQTQKVLlA 133 44888999.********************55..555677*************9999953 PP == domain 2 score: -1.2 bits; conditional E-value: 0.77 AAA_19 6 alagnpllvvtGgPG 20 l+ n++ +v+G PG Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 157 KLE-NGVHIVSGTPG 170 566.99*9******9 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.0 2.2e-05 0.047 11 114 .. 87 214 .. 83 228 .. 0.58 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 2.2e-05 AAA_22 11 GesGvGKTtlarrlaeqldevaeaae...............karvvfveapsstspkel 54 ++sG+GKT + + +q+ + + +e +++ Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 87 AQSGTGKTSMMCMAILQN-IDTQLREcqalvlnptrelaqqT--------------QKV 130 589**********99996.44444445444444444444431..............333 PP AAA_22 55 lkkllralglpakg.....................rltteelleallralrrrrv.gll 91 l +l + + +a++ ++t ++ ++++r r+r ++l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 131 LLALGEFMSIQAHScvggksvgedirklengvhivSGTPGRVHDMIRRRTLRTRSiKVL 189 33333333333333555666666666666666666667777777777666665556*** PP AAA_22 92 iiDEaqh.Lrseelleelrdlld..e 114 ++DEa+ L e++ d + Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 190 LLDEADEmL-GRGFKEQIYDVYRylP 214 *******66.4444444444444444 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.9 0.0 0.19 4.1e+02 31 60 .. 105 134 .. 84 143 .. 0.80 2 ? 10.8 0.0 5.3e-05 0.11 316 388 .. 298 368 .. 268 388 .. 0.86 Alignments for each domain: == domain 1 score: -0.9 bits; conditional E-value: 0.19 DUF1253 31 rdqgftrpkvLillpfrniakevvdllikl 60 d + ++ L+l p+r+ a++ + l+ l Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 105 IDTQLRECQALVLNPTRELAQQTQKVLLAL 134 57777889999********99998888766 PP == domain 2 score: 10.8 bits; conditional E-value: 5.3e-05 DUF1253 316 irnylkkekisFaaiseytsekkisrarklFkkgrkkiLLvteRlhfyrRykikgvkkv 374 +++ +++++++ a++ +k+ +++ k F g+ ++L++t+ ++ r + +++v+ v Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 298 LTDKMRQANFTVSAMHGDMPQKEREEIMKEFRGGNSRVLITTD--VWARGIDVQQVSLV 354 67788899999999999999**********************9..77899********* PP DUF1253 375 ifyslPefpefYse 388 i y lP+++e+Y Gloeochaete-witrockiana-SAG46_84_CAMPEP_0193988324 355 INYDLPNNRELYIH 368 ************76 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (523 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 535 (0.0360731); expected 296.6 (0.02) Passed bias filter: 455 (0.030679); expected 296.6 (0.02) Passed Vit filter: 41 (0.00276448); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.29u 0.49s 00:00:00.78 Elapsed: 00:00:02.16 # Mc/sec: 632.04 // Query: endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 [L=1829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-67 224.9 0.0 1.9e-48 163.6 0.0 3.3 3 Ribonuclease_3 Ribonuclease III domain 2.1e-39 133.9 0.1 4.3e-39 132.9 0.1 1.6 1 PAZ PAZ domain 6.6e-31 105.9 0.0 1.8e-30 104.5 0.0 1.8 1 Dicer_dimer Dicer dimerisation domain 8.1e-21 74.3 0.0 1.2e-12 47.9 0.0 3.3 3 Ribonucleas_3_3 Ribonuclease-III-like 8.4e-18 64.0 0.0 2.5e-17 62.4 0.0 1.8 1 Helicase_C Helicase conserved C-terminal domain 8.9e-11 41.5 0.0 1.8e-10 40.5 0.0 1.5 1 DEAD DEAD/DEAH box helicase 5e-10 39.5 0.4 1.7e-09 37.7 0.0 2.1 2 ResIII Type III restriction enzyme, res subunit Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.0 2.5 5.3e+03 33 67 .. 305 343 .. 283 421 .. 0.72 2 ! 163.6 0.0 8.9e-52 1.9e-48 1 114 [] 1313 1575 .. 1313 1575 .. 0.96 3 ! 57.3 0.0 8.5e-19 1.8e-15 1 67 [. 1702 1768 .. 1702 1804 .. 0.88 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 2.5 HHHHHHT.....SHHHHHHHHHTTTCHCHHBHHHHHHSTT CS Ribonuclease_3 33 klrsklv.....snenlarlakklglpsylresefdppkn 67 + r+ lv +++ a + + +l++y++++ ++++++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 305 DCRAVLVvlgpwCADKVAGMMVR-ELQKYIKHEQEELHRK 343 55555555555544444444444.5999999888888765 PP == domain 2 score: 163.6 bits; conditional E-value: 8.9e-52 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 erLe+LGD++lk+aittylf+typd+heg+ls++rsk+vs endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352 8*************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T....SSSSS. CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp....lnkdla 76 n+nl+rl+kk+glps++++s+fdpp+nwlp +n+d+ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1353 NCNLYRLGKKKGLPSRMVVSIFDPPVNWLPpgyvVNQDKS 1392 **********************************777777 PP SC...................................... CS Ribonuclease_3 77 ngk..................................... 79 n++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1393 NTDkwekdemtkdcmlangkldedyeeedeeeeslmwrap 1432 77788888888889999999999999999*********** PP ........................................ CS Ribonuclease_3 80 ........................................ 79 endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1433 keeadyeddfleydqehirfidnmlmgsgafvkkislspf 1472 **************************************** PP ........................................ CS Ribonuclease_3 80 ........................................ 79 endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1473 sttdsayewkmpkksslgsmpfssdfedfdysswdamcyl 1512 **************************************** PP ........................................ CS Ribonuclease_3 80 ...........................grqsisydlk.eq 91 g+qsisydl+ eq endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1513 dpskaveeddfvvgfwnpseencgvdtGKQSISYDLHtEQ 1552 *********99999999999999999999*********** PP ..TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 92 siadkvladvvEAliGaiyldsg 114 +iadk++ad+vEAl+G++++++g endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1553 CIADKSIADCVEALLGCYLTSCG 1575 **********************8 PP == domain 3 score: 57.3 bits; conditional E-value: 8.5e-19 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 +rLefLGDa+l+++it++l+e + + ++g l++lrs+lv+ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1702 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVN 1741 7********************99999************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT CS Ribonuclease_3 41 nenlarlakklglpsylresefdppkn 67 n+ a la k++ ++y+++ + ++ + endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1742 NTIFASLAVKYDYHKYFKAVSPELFHV 1768 ****************99877766655 PP >> PAZ PAZ domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 132.9 0.1 2e-42 4.3e-39 4 134 .. 894 1064 .. 891 1065 .. 0.98 Alignments for each domain: == domain 1 score: 132.9 bits; conditional E-value: 2e-42 HHHHHHCCCSSSHCCTSHHHH........HHHHHTTEEEE CS PAZ 4 leflerilkqetrrqkkfrkk........lakalkglivl 35 ++f+e+i+k+e r ++ ++k+ +++++++++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 894 FKFMEDIEKSEARIGIPSTKYtketpfvfKLEDYQDAVII 933 78****************999*******999********* PP ETTSCGG..EEEEEEEEECCETTTSEEEETTTEEEEHHHH CS PAZ 36 ttyrnne..rkyriadiseeptpestfpdkegkeitvaeY 73 ++yrn + +++++ad+ ++ tp s+fp +++t+aeY endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 934 PRYRNFDqpHRFYVADVYTDLTPLSKFPSP--EYETFAEY 971 ******************************..******** PP HHHCCT---SSTTSEEEEEECSSSS............... CS PAZ 74 fkkkYnielkypnqplldvkktsrr............... 98 +k+kYn++l++ nqplldv++ts+r endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 972 YKTKYNLDLTNLNQPLLDVDHTSSRlnlltprhlnqkgka 1011 **************************************** PP .................SEEEE-CCCEEEETTT---S--X CS PAZ 99 .................qeqylppElcdivplqrslkkdf 121 ++q+l+pElc i+p+++sl++++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1012 lplssaekrkakweslqNKQILVPELCAIHPIPASLWRKA 1051 **************************************** PP XXXXXXXXXXXXX CS PAZ 122 aaqksilyrtral 134 ++++silyr ++l endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1052 VCLPSILYRLHCL 1064 *********9986 PP >> Dicer_dimer Dicer dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 104.5 0.0 8.6e-34 1.8e-30 1 90 [. 630 721 .. 630 722 .. 0.97 Alignments for each domain: == domain 1 score: 104.5 bits; conditional E-value: 8.6e-34 HHHHHHHHHTTSSS-TT--SS-EEEEEE--G-EEE.EEE- CS Dicer_dimer 1 aiallarYCakLpsdaftklkpefevekeeeglvc.tveL 39 ai +++rYCa+Lpsd+ft+l+p++++++ +g+++ t++L endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 630 AIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYsTLYL 669 799***************************988888**** PP -TT-SS--.EEEE--SSHHHHHHHHHHHHHHHHHHH-S-T CS Dicer_dimer 40 Plnsplre.iegkpmkskklakqsaAfkackkLyelgeLn 78 P+nsplr+ i+g+pm+ ++la++ +A+ +c+kL+++geL+ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 670 PINSPLRAsIVGPPMSCVRLAERVVALICCEKLHKIGELD 709 **************************************** PP TTS--HHHH-S- CS Dicer_dimer 79 dhLlPvkkerva 90 dhL+Pv+ke+v+ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 710 DHLMPVGKETVK 721 ********9986 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.8 0.0 6.3e-08 0.00013 17 80 .. 1306 1371 .. 1293 1409 .. 0.81 2 ? -0.4 0.0 0.47 9.9e+02 93 119 .. 1556 1582 .. 1547 1588 .. 0.73 3 ! 47.9 0.0 5.6e-16 1.2e-12 1 79 [. 1679 1759 .. 1679 1768 .. 0.88 Alignments for each domain: == domain 1 score: 21.8 bits; conditional E-value: 6.3e-08 Ribonucleas_3_3 17 grkgyN.erLefLGdavLelvvseyllek.akkdegeltk 54 ++ g+N erLe+LGd+ L+ ++++yl+ ++ eg+l+ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1306 ASDGFNlERLEMLGDSFLKHAITTYLFCTyPDAHEGRLSY 1345 44444449*****************9866267789***** PP Ribonucleas_3_3 55 klaslvseeslaeiakelgLgkvlrl 80 ++++ vs+ +l +++k+ gL + +++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1346 MRSKKVSNCNLYRLGKKKGLPSRMVV 1371 *******************9988876 PP == domain 2 score: -0.4 bits; conditional E-value: 0.47 Ribonucleas_3_3 93 ekvladaleAliGAiyldkGaeeakef 119 +k +ad++eAl+G G ++a+ f endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1556 DKSIADCVEALLGCYLTSCGERAAQLF 1582 56679********86666666666555 PP == domain 3 score: 47.9 bits; conditional E-value: 5.6e-16 Ribonucleas_3_3 1 deelllqaltHkSyangr.kgyNerLefLGdavLelvvse 39 ++ +llqa+tH Sy+++ +++++rLefLGda+L+ ++++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1679 NKAYLLQAFTHASYHYNTiTDCYQRLEFLGDAILDYLITK 1718 57889*********8665389******************* PP Ribonucleas_3_3 40 yllekakk.degeltkklaslvseeslaeiakelgLgkvl 78 +l+e++++ + g lt +++lv+++ a +a + + k+ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1719 HLYEDPRQhSPGVLTDLRSALVNNTIFASLAVKYDYHKYF 1758 *****8662689*******************999888886 PP Ribonucleas_3_3 79 r 79 + endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1759 K 1759 5 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.4 0.0 1.2e-20 2.5e-17 16 76 .. 495 554 .. 469 556 .. 0.85 Alignments for each domain: == domain 1 score: 62.4 bits; conditional E-value: 1.2e-20 TSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEE CS Helicase_C 16 elpqnereeileqfnagkskvlvatnvaerGidlpdvnvV 55 e + +++ee+l++f+a++++ l+at+++e+G+d+p++n+V endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 495 EAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLV 534 5667899********************************* PP EESSSSSSHHHHHHHHTTSST CS Helicase_C 56 infdlprsvtsyiQriGRtgR 76 + fdlp+ ++sy+Q GR +R endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 535 VRFDLPTEYRSYVQSKGR-AR 554 ******************.55 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.5 0.0 8.6e-14 1.8e-10 2 161 .. 46 208 .. 45 213 .. 0.73 Alignments for each domain: == domain 1 score: 40.5 bits; conditional E-value: 8.6e-14 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqille 41 ++Q e ++++l+ ++++v+ +TGsGKT ++++ + ++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 46 KYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQ 84 679999999995.9*****************976665554 PP TCTT........EEEEEESSHHHHHHHHHHHHHHTTT..S CS xxxx........xxxxxxxxxxxxxxxxxxxxxxxxx..x RF DEAD 42 tkdq........kalivaPtreLaeqtlnnlkqfkky..p 71 + ++++++ + ++q+++ +++ + endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 85 I--RgdfsrngkRTVFLVNSANQVAQQVSAVRTHSDLkvG 122 3..1346788889999999988888888888666654443 PP SCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 72 klrvlliiggvalardqlsvldngvdivvgTpgrlddlvs 111 + + l + + +++r ++++ + +++++T +++++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 123 EYSNLEVNASWTKERWNQEFT--KHQVLIMTCYVALNVLK 160 334444444445555566566..47*************** PP TTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 112 tgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgk 151 +g l+ls+++llV+DE++ +++i++++++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 161 NGYLSLSDINLLVFDECHLAIL---DHPYREIMKLCENCP 197 ******************8766...234555666654444 PP TSE.EEEEESS CS xxx.xxxxxxx RF DEAD 152 rlq.vivlSAT 161 +++ ++ l+A endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 198 SCPrILGLTAS 208 44447778776 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.7 0.0 8.1e-13 1.7e-09 2 180 .. 42 207 .. 30 209 .. 0.73 2 ? -3.9 0.3 4.9 1e+04 99 138 .. 1390 1431 .. 1386 1449 .. 0.54 Alignments for each domain: == domain 1 score: 37.7 bits; conditional E-value: 8.1e-13 -EE-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHH CS ResIII 2 lklrpyQeeaienllesiekedekkrglivmaTGtGKTlv 41 +++r+yQ e +e+ l ++ ++ + TG+GKT++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 42 YTPRKYQVELLEAAL--------DHNTIVCLNTGSGKTFI 73 456777777777777........56899999********* PP HHHHHHHH-S...........-EEEEESSHHHHHHHHHHG CS ResIII 42 aasliarlar...........kflflvprkelleqaleef 70 a l ++l +++flv++ + + q + endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 74 AVLLTKELSYqirgdfsrngkRTVFLVNSANQVAQQVSAV 113 **666666558889***********************999 PP GGGTGG...GEEEESSS-B---SEEEEEHHHHH....... CS ResIII 71 kkfeskkiefekkniavakkdklfgeeqkkskdkeekkkk 110 ++ s+ + e++n+ + + k++ +++ + endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 114 -RTHSDLKVGEYSNLE---------VNASWTKERWNQEFT 143 .455554444444443.........344444444444445 PP ...........................HTHHHHTTT-SEE CS ResIII 111 dkeiilttiqklhkaleeeeendeskseslealldefdvi 150 + +++++t + l++ +l +++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 144 KHQVLIMTCYVALNVLKN-----------GYLSLSDINLL 172 555555555555555444...........456677788** PP EEETGGGTTSTT.THHHHH.....---SEEEEEES CS ResIII 151 iiDEaHrlsakkkyreile.....fkkafllglTA 180 ++DE+H + ++ yrei++ + + +lglTA endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 173 VFDECHLAILDHPYREIMKlcencPSCPRILGLTA 207 *******************9998855667899999 PP == domain 2 score: -3.9 bits; conditional E-value: 4.9 HHHHH................................... CS ResIII 99 kkskdkeekkkkdkeiilttiqklhkaleeeeend.esks 137 +ks+ + +k++ +++++ + kl ++ eee+e++ + ++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1390 DKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEeSLMW 1429 4444444444555556666667888887776666633333 PP .H CS ResIII 138 .e 138 + endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1430 rA 1431 53 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1829 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 558 (0.0376239); expected 296.6 (0.02) Passed bias filter: 242 (0.0163172); expected 296.6 (0.02) Passed Vit filter: 37 (0.00249477); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.65u 0.37s 00:00:01.02 Elapsed: 00:00:01.22 # Mc/sec: 3913.36 // Query: _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 [L=1922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-75 249.3 0.1 2e-48 163.5 0.0 3.3 3 Ribonuclease_3 Ribonuclease III domain 2.2e-39 133.8 0.1 4.6e-39 132.8 0.1 1.6 1 PAZ PAZ domain 5.8e-31 106.1 0.0 1.9e-30 104.4 0.0 2.0 1 Dicer_dimer Dicer dimerisation domain 1.1e-25 90.0 0.0 3.1e-17 62.7 0.0 3.8 3 Ribonucleas_3_3 Ribonuclease-III-like 9e-18 63.9 0.0 2.7e-17 62.3 0.0 1.8 1 Helicase_C Helicase conserved C-terminal domain 9.5e-11 41.4 0.0 2e-10 40.4 0.0 1.5 1 DEAD DEAD/DEAH box helicase 5.4e-10 39.4 0.4 1.8e-09 37.6 0.0 2.1 2 ResIII Type III restriction enzyme, res subunit 0.00085 19.8 0.0 0.0031 18.0 0.0 2.1 1 dsrm Double-stranded RNA binding motif Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.0 3.1 5.7e+03 33 67 .. 305 343 .. 283 419 .. 0.72 2 ! 163.5 0.0 1.1e-51 2e-48 1 114 [] 1313 1575 .. 1313 1575 .. 0.96 3 ! 82.1 0.0 1.9e-26 3.6e-23 1 114 [] 1702 1824 .. 1702 1824 .. 0.83 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 3.1 HHHHHHT.....SHHHHHHHHHTTTCHCHHBHHHHHHSTT CS Ribonuclease_3 33 klrsklv.....snenlarlakklglpsylresefdppkn 67 + r+ lv +++ a + + +l++y++++ ++++++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 305 DCRAVLVvlgpwCADKVAGMMVR-ELQKYIKHEQEELHRK 343 55555555555544444444444.5999999888888765 PP == domain 2 score: 163.5 bits; conditional E-value: 1.1e-51 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 erLe+LGD++lk+aittylf+typd+heg+ls++rsk+vs _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352 8*************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T....SSSSS. CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp....lnkdla 76 n+nl+rl+kk+glps++++s+fdpp+nwlp +n+d+ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1353 NCNLYRLGKKKGLPSRMVVSIFDPPVNWLPpgyvVNQDKS 1392 **********************************777777 PP SC...................................... CS Ribonuclease_3 77 ngk..................................... 79 n++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1393 NTDkwekdemtkdcmlangkldedyeeedeeeeslmwrap 1432 77788888888889999999999999999*********** PP ........................................ CS Ribonuclease_3 80 ........................................ 79 _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1433 keeadyeddfleydqehirfidnmlmgsgafvkkislspf 1472 **************************************** PP ........................................ CS Ribonuclease_3 80 ........................................ 79 _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1473 sttdsayewkmpkksslgsmpfssdfedfdysswdamcyl 1512 **************************************** PP ........................................ CS Ribonuclease_3 80 ...........................grqsisydlk.eq 91 g+qsisydl+ eq _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1513 dpskaveeddfvvgfwnpseencgvdtGKQSISYDLHtEQ 1552 *********99999999999999999999*********** PP ..TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 92 siadkvladvvEAliGaiyldsg 114 +iadk++ad+vEAl+G++++++g _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1553 CIADKSIADCVEALLGCYLTSCG 1575 **********************8 PP == domain 3 score: 82.1 bits; conditional E-value: 1.9e-26 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 +rLefLGDa+l+++it++l+e + + ++g l++lrs+lv+ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1702 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVN 1741 7********************99999************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T.....SSSSS CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp.....lnkdl 75 n+ a la k++ ++y+++ + ++ + + + l+k++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1742 NTIFASLAVKYDYHKYFKAVSPELFHVIDDfvqfqLEKNE 1781 ******************9999999999999887633333 PP .SC...................TSHHHHHHHHHHHHHHHH CS Ribonuclease_3 76 angk....grqsisydlkeqsiadkvladvvEAliGaiyl 111 +g +r++ ++ + e +k ++d++E+l+Gaiy+ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1782 MQGMdselRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYM 1821 33335554334433333366668***************** PP HTT CS Ribonuclease_3 112 dsg 114 dsg _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1822 DSG 1824 *97 PP >> PAZ PAZ domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 132.8 0.1 2.5e-42 4.6e-39 4 134 .. 894 1064 .. 891 1065 .. 0.98 Alignments for each domain: == domain 1 score: 132.8 bits; conditional E-value: 2.5e-42 HHHHHHCCCSSSHCCTSHHHH........HHHHHTTEEEE CS PAZ 4 leflerilkqetrrqkkfrkk........lakalkglivl 35 ++f+e+i+k+e r ++ ++k+ +++++++++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 894 FKFMEDIEKSEARIGIPSTKYtketpfvfKLEDYQDAVII 933 78****************999*******999********* PP ETTSCGG..EEEEEEEEECCETTTSEEEETTTEEEEHHHH CS PAZ 36 ttyrnne..rkyriadiseeptpestfpdkegkeitvaeY 73 ++yrn + +++++ad+ ++ tp s+fp +++t+aeY _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 934 PRYRNFDqpHRFYVADVYTDLTPLSKFPSP--EYETFAEY 971 ******************************..******** PP HHHCCT---SSTTSEEEEEECSSSS............... CS PAZ 74 fkkkYnielkypnqplldvkktsrr............... 98 +k+kYn++l++ nqplldv++ts+r _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 972 YKTKYNLDLTNLNQPLLDVDHTSSRlnlltprhlnqkgka 1011 **************************************** PP .................SEEEE-CCCEEEETTT---S--X CS PAZ 99 .................qeqylppElcdivplqrslkkdf 121 ++q+l+pElc i+p+++sl++++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1012 lplssaekrkakweslqNKQILVPELCAIHPIPASLWRKA 1051 **************************************** PP XXXXXXXXXXXXX CS PAZ 122 aaqksilyrtral 134 ++++silyr ++l _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1052 VCLPSILYRLHCL 1064 *********9986 PP >> Dicer_dimer Dicer dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 104.4 0.0 1e-33 1.9e-30 1 90 [. 630 721 .. 630 722 .. 0.97 Alignments for each domain: == domain 1 score: 104.4 bits; conditional E-value: 1e-33 HHHHHHHHHTTSSS-TT--SS-EEEEEE--G-EEE.EEE- CS Dicer_dimer 1 aiallarYCakLpsdaftklkpefevekeeeglvc.tveL 39 ai +++rYCa+Lpsd+ft+l+p++++++ +g+++ t++L _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 630 AIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYsTLYL 669 799***************************988888**** PP -TT-SS--.EEEE--SSHHHHHHHHHHHHHHHHHHH-S-T CS Dicer_dimer 40 Plnsplre.iegkpmkskklakqsaAfkackkLyelgeLn 78 P+nsplr+ i+g+pm+ ++la++ +A+ +c+kL+++geL+ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 670 PINSPLRAsIVGPPMSCVRLAERVVALICCEKLHKIGELD 709 **************************************** PP TTS--HHHH-S- CS Dicer_dimer 79 dhLlPvkkerva 90 dhL+Pv+ke+v+ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 710 DHLMPVGKETVK 721 ********9986 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.8 0.0 7.6e-08 0.00014 17 80 .. 1306 1371 .. 1293 1409 .. 0.81 2 ? -0.5 0.0 0.57 1e+03 93 119 .. 1556 1582 .. 1547 1588 .. 0.73 3 ! 62.7 0.0 1.7e-20 3.1e-17 1 114 [. 1679 1826 .. 1679 1831 .. 0.87 Alignments for each domain: == domain 1 score: 21.8 bits; conditional E-value: 7.6e-08 Ribonucleas_3_3 17 grkgyN.erLefLGdavLelvvseyllek.akkdegeltk 54 ++ g+N erLe+LGd+ L+ ++++yl+ ++ eg+l+ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1306 ASDGFNlERLEMLGDSFLKHAITTYLFCTyPDAHEGRLSY 1345 44444449*****************9866267789***** PP Ribonucleas_3_3 55 klaslvseeslaeiakelgLgkvlrl 80 ++++ vs+ +l +++k+ gL + +++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1346 MRSKKVSNCNLYRLGKKKGLPSRMVV 1371 *******************9988876 PP == domain 2 score: -0.5 bits; conditional E-value: 0.57 Ribonucleas_3_3 93 ekvladaleAliGAiyldkGaeeakef 119 +k +ad++eAl+G G ++a+ f _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1556 DKSIADCVEALLGCYLTSCGERAAQLF 1582 56679********86666666666555 PP == domain 3 score: 62.7 bits; conditional E-value: 1.7e-20 Ribonucleas_3_3 1 deelllqaltHkSyangr.kgyNerLefLGdavLelvvse 39 ++ +llqa+tH Sy+++ +++++rLefLGda+L+ ++++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1679 NKAYLLQAFTHASYHYNTiTDCYQRLEFLGDAILDYLITK 1718 57889*********8665389******************* PP Ribonucleas_3_3 40 yllekakk.degeltkklaslvseeslaeiakelg..... 73 +l+e++++ + g lt +++lv+++ a +a + + _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1719 HLYEDPRQhSPGVLTDLRSALVNNTIFASLAVKYDyhkyf 1758 *****8662689*******************9999999** PP Ribonucleas_3_3 74 ..........................Lgkvlrl.rkgeee 86 +++ lr +++ee+ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1759 kavspelfhviddfvqfqleknemqgMDSELRRsEEDEEK 1798 **********999999997777777766666665666777 PP Ribonucleas_3_3 87 tessgrekvladaleAliGAiyldkGae 114 +e + k ++d++e+l GAiy+d+G++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1799 EEDIEVPKAMGDIFESLAGAIYMDSGMS 1826 77778889******************85 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.3 0.0 1.4e-20 2.7e-17 16 76 .. 495 554 .. 469 556 .. 0.85 Alignments for each domain: == domain 1 score: 62.3 bits; conditional E-value: 1.4e-20 TSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEE CS Helicase_C 16 elpqnereeileqfnagkskvlvatnvaerGidlpdvnvV 55 e + +++ee+l++f+a++++ l+at+++e+G+d+p++n+V _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 495 EAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLV 534 5667899********************************* PP EESSSSSSHHHHHHHHTTSST CS Helicase_C 56 infdlprsvtsyiQriGRtgR 76 + fdlp+ ++sy+Q GR +R _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 535 VRFDLPTEYRSYVQSKGR-AR 554 ******************.55 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.4 0.0 1.1e-13 2e-10 2 161 .. 46 208 .. 45 213 .. 0.73 Alignments for each domain: == domain 1 score: 40.4 bits; conditional E-value: 1.1e-13 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqille 41 ++Q e ++++l+ ++++v+ +TGsGKT ++++ + ++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 46 KYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQ 84 679999999995.9*****************976665554 PP TCTT........EEEEEESSHHHHHHHHHHHHHHTTT..S CS xxxx........xxxxxxxxxxxxxxxxxxxxxxxxx..x RF DEAD 42 tkdq........kalivaPtreLaeqtlnnlkqfkky..p 71 + ++++++ + ++q+++ +++ + _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 85 I--RgdfsrngkRTVFLVNSANQVAQQVSAVRTHSDLkvG 122 3..1346788889999999988888888888666654443 PP SCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 72 klrvlliiggvalardqlsvldngvdivvgTpgrlddlvs 111 + + l + + +++r ++++ + +++++T +++++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 123 EYSNLEVNASWTKERWNQEFT--KHQVLIMTCYVALNVLK 160 334444444445555566566..47*************** PP TTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 112 tgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgk 151 +g l+ls+++llV+DE++ +++i++++++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 161 NGYLSLSDINLLVFDECHLAIL---DHPYREIMKLCENCP 197 ******************8766...234555666654444 PP TSE.EEEEESS CS xxx.xxxxxxx RF DEAD 152 rlq.vivlSAT 161 +++ ++ l+A _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 198 SCPrILGLTAS 208 44447778776 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.6 0.0 9.9e-13 1.8e-09 2 180 .. 42 207 .. 30 209 .. 0.73 2 ? -4.0 0.3 5.9 1.1e+04 99 138 .. 1390 1431 .. 1386 1449 .. 0.54 Alignments for each domain: == domain 1 score: 37.6 bits; conditional E-value: 9.9e-13 -EE-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHH CS ResIII 2 lklrpyQeeaienllesiekedekkrglivmaTGtGKTlv 41 +++r+yQ e +e+ l ++ ++ + TG+GKT++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 42 YTPRKYQVELLEAAL--------DHNTIVCLNTGSGKTFI 73 456777777777777........56899999********* PP HHHHHHHH-S...........-EEEEESSHHHHHHHHHHG CS ResIII 42 aasliarlar...........kflflvprkelleqaleef 70 a l ++l +++flv++ + + q + _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 74 AVLLTKELSYqirgdfsrngkRTVFLVNSANQVAQQVSAV 113 **666666558889***********************999 PP GGGTGG...GEEEESSS-B---SEEEEEHHHHH....... CS ResIII 71 kkfeskkiefekkniavakkdklfgeeqkkskdkeekkkk 110 ++ s+ + e++n+ + + k++ +++ + _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 114 -RTHSDLKVGEYSNLE---------VNASWTKERWNQEFT 143 .455554444444443.........344444444444445 PP ...........................HTHHHHTTT-SEE CS ResIII 111 dkeiilttiqklhkaleeeeendeskseslealldefdvi 150 + +++++t + l++ +l +++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 144 KHQVLIMTCYVALNVLKN-----------GYLSLSDINLL 172 555555555555555444...........456677788** PP EEETGGGTTSTT.THHHHH.....---SEEEEEES CS ResIII 151 iiDEaHrlsakkkyreile.....fkkafllglTA 180 ++DE+H + ++ yrei++ + + +lglTA _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 173 VFDECHLAILDHPYREIMKlcencPSCPRILGLTA 207 *******************9998855667899999 PP == domain 2 score: -4.0 bits; conditional E-value: 5.9 HHHHH................................... CS ResIII 99 kkskdkeekkkkdkeiilttiqklhkaleeeeend.esks 137 +ks+ + +k++ +++++ + kl ++ eee+e++ + ++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1390 DKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEeSLMW 1429 4444444444555556666667888887776666633333 PP .H CS ResIII 138 .e 138 + _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1430 rA 1431 53 PP >> dsrm Double-stranded RNA binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 1.7e-06 0.0031 14 67 .] 1860 1912 .. 1853 1912 .. 0.82 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 1.7e-06 SCCEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEESSHH CS dsrm 14 kppnyeyvseegpphslkkFtvtvkvngklygtGvgssKK 53 ++p++ s + + + k +vtv+v gk +Gvg+s + _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1860 MEPETAKFSPAERTYD-GKVRVTVEVVGKGKFKGVGRSYR 1898 5666666666677777.7899*****998888******** PP HHHHHHHHHHHHHH CS dsrm 54 eAeqlAAekALqkL 67 A+++AA++AL+ L _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1899 IAKSAAARRALRSL 1912 ***********987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1922 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 608 (0.0409952); expected 296.6 (0.02) Passed bias filter: 261 (0.0175983); expected 296.6 (0.02) Passed Vit filter: 40 (0.00269705); expected 14.8 (0.001) Passed Fwd filter: 8 (0.000539411); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:01.59 # Mc/sec: 3155.38 // Query: dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 [L=1965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-40 137.5 0.6 5.6e-23 81.5 0.0 6.7 7 Ribonuclease_3 Ribonuclease III domain 6.8e-22 77.7 4.1 6.2e-13 48.8 0.0 4.7 4 Ribonucleas_3_3 Ribonuclease-III-like 1.5e-14 54.2 4.0 1.5e-14 54.2 2.8 7.4 8 ResIII Type III restriction enzyme, res subunit 6.7e-12 45.0 0.1 3.9e-11 42.6 0.0 2.3 2 Helicase_C Helicase conserved C-terminal domain 6e-08 32.3 2.2 9.8e-07 28.4 1.5 2.9 1 DEAD DEAD/DEAH box helicase 1.1e-06 28.3 0.1 3.5e-06 26.6 0.0 2.0 1 Dicer_dimer Dicer dimerisation domain Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.1 3 7.3e+03 45 101 .. 330 389 .. 320 389 .. 0.57 2 ? -9.2 5.4 6 1.5e+04 34 52 .. 619 637 .. 497 730 .. 0.65 3 ? 2.1 0.3 0.1 2.6e+02 41 110 .. 871 948 .. 853 956 .. 0.65 4 ? -2.1 0.1 2 5e+03 48 71 .. 1329 1360 .. 1306 1416 .. 0.56 5 ! 64.4 0.1 4.7e-21 1.2e-17 1 113 [. 1455 1613 .. 1455 1614 .. 0.78 6 ? -3.9 0.1 6 1.5e+04 29 47 .. 1699 1717 .. 1686 1738 .. 0.49 7 ! 81.5 0.0 2.3e-26 5.6e-23 1 113 [. 1750 1862 .. 1750 1863 .. 0.90 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 3 HHHHHTTTCHC.HHBHHHHHHSTT--T.........SSSS CS Ribonuclease_3 45 arlakklglps.ylresefdppknwlp.........lnkd 74 ++l+ + l+ ++++++++ +k +++ ++k+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 330 SELCTN--LDAnFVKYNIEESKKYIKEaticveeygEEKN 367 556665..43337777777777777776666543322222 PP S.SC...............TSHHHHHH CS Ribonuclease_3 75 langkgrqsisydlkeqsiadkvladv 101 ++ + +++ l+eq i +k ++d+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 368 IQ-----ERANQFLQEQIIGEKWISDI 389 22.....23344555888999988885 PP == domain 2 score: -9.2 bits; conditional E-value: 6 HHHHHTSHHHHHHHHHTTT CS Ribonuclease_3 34 lrsklvsnenlarlakklg 52 s++++n+n + ++++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 619 QNSEFTQNDNFEFAEEEYR 637 2333333333333333333 PP == domain 3 score: 2.1 bits; conditional E-value: 0.1 HHHHHHHHHT...TTCHCHHBHHHHHHSTT--T....... CS Ribonuclease_3 41 nenlarlakk...lglpsylresefdppknwlp....... 70 ++++a + + + +++ylr+ ++++++++ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 871 ACFQAVIILYrqyKIFDQYLRNISQKIQNSQSEkseslfe 910 555554444311133799*********9999998877643 PP SSSSS.SC...............TSHHHHHHHHHHHHHHH CS Ribonuclease_3 71 lnkdlangkgrqsisydlkeqsiadkvladvvEAliGaiy 110 +kd++ ++ +y ++ ++++k +++++G ++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 911 DEKDEKL--TKILQKYCKSYVDVKQKCKMYYFQSVMGECF 948 2333333..3344455555777777777777777777655 PP == domain 4 score: -2.1 bits; conditional E-value: 2 HHTTTCHCHHBHHHHHHSTT--T........S CS Ribonuclease_3 48 akklglpsylresefdppknwlp........l 71 +++++lp+++ + +++++n++ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1329 FQQIRLPKFFDKAYQRIKNNNKTscsynldqI 1360 33455666666666666666655433322220 PP == domain 5 score: 64.4 bits; conditional E-value: 4.7e-21 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 er+efLGD vlk++ +t+++ ++p+ e++l+ r+ +++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1455 ERYEFLGDTVLKCLSSTQIYFEHPKSMEDHLHVHRTIIIQ 1494 8*************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T.......... CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp.......... 70 n+nla++a k+++ +y+ +s+ ++ p dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1495 NRNLAQIAVKKKIFKYILSSKIETLS---Pigikyeiavd 1531 ******************98888865...34558999988 PP .......................SSSSS.SC......... CS Ribonuclease_3 71 .......................lnkdlangk........ 79 + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1532 ddeqnqfqkekepdeydkadqrnK-------Nkkgneedg 1564 887777666666665555554440.......045555555 PP .............................TSHHHHHHHHH CS Ribonuclease_3 80 ...........grqsisydlk....eqsiadkvladvvEA 104 ++++i + l+ ++i+ k+lad++E+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1565 daeneeieeqqQQNDIPNLLRleptYRHIKGKTLADTLES 1604 55555555444667777777777888999*********** PP HHHHHHHHT CS Ribonuclease_3 105 liGaiylds 113 +iG+ + ++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1605 IIGVFFQQK 1613 ****99875 PP == domain 6 score: -3.9 bits; conditional E-value: 6 HHHHHHHHHHTSHHHHHHH CS Ribonuclease_3 29 gklsklrsklvsnenlarl 47 +kl+++ +++ ++en+ ++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1699 NKLHQINNAIQKKENQGTF 1717 3444444444444444332 PP == domain 7 score: 81.5 bits; conditional E-value: 2.3e-26 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 +rLefLGDavl+l+i++ylf+++p+ ++g+l++++++lv+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1750 QRLEFLGDAVLDLIIVEYLFNKFPNSDPGELTQMKTSLVQ 1789 7*************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--TSSSSS.SC.. CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlplnkdlangkg 80 n++l+ + +g++++++ s+++ ++ ++ l+++ + g dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1790 NKTLCLINLMKGFYKFIIGSIQHNKEEIELLLNNVEMFMG 1829 ******************9888888777764444444448 PP .............TSHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 81 rqsisydlkeqsiadkvladvvEAliGaiylds 113 ++s yd +++ k+l+dv+E+l+Gai++d+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1830 DTSLMYDTTYNQSLIKTLGDVIESLVGAIFIDN 1862 88999999999999*****************97 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.2 0.1 0.73 1.8e+03 29 75 .. 130 177 .. 128 197 .. 0.57 2 ! 24.5 0.1 8.3e-09 2e-05 16 82 .. 1448 1515 .. 1436 1524 .. 0.85 3 ? 1.1 0.0 0.14 3.5e+02 62 110 .. 1568 1612 .. 1544 1620 .. 0.73 4 ! 48.8 0.0 2.5e-16 6.2e-13 20 126 .. 1747 1879 .. 1736 1881 .. 0.75 Alignments for each domain: == domain 1 score: -1.2 bits; conditional E-value: 0.73 Ribonucleas_3_3 29 GdavLelvvseyllekakk.degeltkklaslvseeslae 67 G+ +++ ++++y+++k+kk +++++ la+ v+ + ++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 130 GKTMIATMLINYFFQKQKKaPQKKKIIFLANTVQLVKQQY 169 7778889999999999655234455555555444333333 PP Ribonucleas_3_3 68 iakelgLg 75 + +L+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 170 AEIKNNLQ 177 33333333 PP == domain 2 score: 24.5 bits; conditional E-value: 8.3e-09 Ribonucleas_3_3 16 ngrkgyNerLefLGdavLe.lvvseyllekakkdegeltk 54 n+++++ er efLGd vL+ l+++++++e++k e l dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1448 NNKESSLERYEFLGDTVLKcLSSTQIYFEHPKSMEDHLHV 1487 5567889************445667889************ PP Ribonucleas_3_3 55 klaslvseeslaeiakelgLgkvlrlrk 82 ++ ++++++la+ia + ++ k+++ +k dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1488 HRTIIIQNRNLAQIAVKKKIFKYILSSK 1515 ********************99998765 PP == domain 3 score: 1.1 bits; conditional E-value: 0.14 Ribonucleas_3_3 62 eeslaeiakelgLgkvlrlrkgeeetessgrekvladale 101 +e+++e ++ ++ ++lrl+ t ++ + k lad+le dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1568 NEEIEEQQQQNDIPNLLRLEP----TYRHIKGKTLADTLE 1603 567777777888888888855....4444455689***** PP Ribonucleas_3_3 102 AliGAiyld 110 ++iG + + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1604 SIIGVFFQQ 1612 ****76655 PP == domain 4 score: 48.8 bits; conditional E-value: 2.5e-16 Ribonucleas_3_3 20 gyNerLefLGdavLelvvseyllek.akkdegeltkklas 58 +N+rLefLGdavL+l+++eyl++k ++ d gelt++++s dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1747 LCNQRLEFLGDAVLDLIIVEYLFNKfPNSDPGELTQMKTS 1786 47***********************445678********* PP Ribonucleas_3_3 59 lvseeslaeiakelg...................Lgkv.l 78 lv++++l i g L++v + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1787 LVQNKTLCLINLMKGfykfiigsiqhnkeeiellLNNVeM 1826 *****88776666666688888888888888897777634 PP Ribonucleas_3_3 79 rlrkgeee...tessgrekvladaleAliGAiyldkG..a 113 ++++++ + t ++++ k l+d++e+l+GAi++d+ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1827 FMGDTSLMydtTYNQSLIKTLGDVIESLVGAIFIDNNldY 1866 55554444111555566679***************96225 PP Ribonucleas_3_3 114 eeakefveekilk 126 e +k++v+e +++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1867 EITKKIVMETLFA 1879 6678888877765 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 1.0 3.6 8.8e+03 79 108 .. 19 48 .. 3 84 .. 0.48 2 ! 54.2 2.8 6.2e-18 1.5e-14 4 182 .. 105 312 .. 97 314 .. 0.67 3 ? -18.0 14.7 6 1.5e+04 69 125 .. 604 657 .. 463 703 .. 0.62 4 ? -0.5 0.8 0.36 9e+02 48 107 .. 871 932 .. 854 945 .. 0.59 5 ? -1.1 0.2 0.57 1.4e+03 78 133 .. 1215 1274 .. 1197 1356 .. 0.67 6 ? -3.6 1.1 3.4 8.4e+03 101 118 .. 1538 1555 .. 1491 1582 .. 0.52 7 ? -4.6 0.9 6 1.5e+04 70 90 .. 1708 1728 .. 1692 1752 .. 0.43 8 ? -3.3 0.6 2.6 6.4e+03 51 97 .. 1904 1952 .. 1895 1965 .] 0.50 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 3.6 .GEEEESSS-B---SEEEEEHHHHH..... CS ResIII 79 efekkniavakkdklfgeeqkkskdkeekk 108 + ++ +++ ak+ ++f ++ ++s+d++e++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 19 NSQQDSVIFAKNTENFLKSDSSSSDQDEEF 48 222333333333333333333333333322 PP == domain 2 score: 54.2 bits; conditional E-value: 6.2e-18 E-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHHHH CS ResIII 4 lrpyQeeaienllesiekedekkrglivmaTGtGKTlvaa 43 +r+yQ+e +n + k+ +i ++TG+GKT++a+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 105 IRNYQKELFKN--------SYSKNSIIYLETGAGKTMIAT 136 44445444444........457899*************** PP HHHHHH-S.........-EEEEESSHHHHHHHHHHG.... CS ResIII 44 sliarlar.........kflflvprkelleqaleef.... 70 li ++++ k++fl+++ +l++q + e+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 137 MLINYFFQkqkkapqkkKIIFLANTVQLVKQQYAEIknnl 176 ************************************7666 PP .........GGGTGG...GEEEESS.S-B---SEEEEEHH CS ResIII 71 .........kkfeskkiefekknia.vakkdklfgeeqkk 100 +k+ s+ +f ++ + +e+ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 177 qrisemmenDKEISQILKF----QEgINYRRIFEKENHIV 212 6666433332222222222....22122333222333333 PP HHH..................................... CS ResIII 101 skdkeekkkkdkeiilttiqklhkaleeeeendesks... 137 + + k+k++ +i +t qk+ le+ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 213 KCHGSYKQKDNLQIETFTKQKWDYLLENY-------Eifv 245 33444555666666677777777666652.......0344 PP ..........HTHHHHTTT-SEEEEETGGGTTSTT.THHH CS ResIII 138 ..........eslealldefdviiiDEaHrlsakkkyrei 167 + + + +vii DE+H++ +++ y i dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 246 migqvllnglRRGYIRIEDIEVIIYDECHHTRQDHPYCLI 285 556678888755566666777**************96666 PP HH............---SEEEEEESS- CS ResIII 168 le............fkkafllglTATp 182 + ++ +++ glTA p dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 286 QYefyhfhkrrneqVQLPKIYGLTASP 312 555555555555566777788999877 PP == domain 3 score: -18.0 bits; conditional E-value: 6 HGGGGTGG...GEEEESSS-B---SEEEEEHHHHH..... CS ResIII 69 efkkfeskkiefekkniavakkdklfgeeqkkskdkeekk 108 +f++ ++k+ + ++ ++++ +++++f++ +++ ++++k dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 604 NFQDRKKKNLNKNQYQNSEFTQNDNFEFAEEEYRQQQMK- 642 233333333333333333333333333333333333222. PP ................. CS ResIII 109 kkdkeiilttiqklhka 125 ++++i ++i k + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 643 --QESLISSQINKEEDI 657 ..333333333333333 PP == domain 4 score: -0.5 bits; conditional E-value: 0.36 HH-S-EEEEESSHHHHHHHHHHG.GGGTGG....GEEEES CS ResIII 48 rlarkflflvprkelleqaleef.kkfeskki.efekkni 85 ++++ +++l + ++ +q l+++ +k+++++ + e+++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 871 ACFQAVIILYRQYKIFDQYLRNIsQKIQNSQSeKSESLFE 910 4555899999999999999999963333332202233333 PP SS-B---SEEEEEHHHHH.... CS ResIII 86 avakkdklfgeeqkkskdkeek 107 +++++ + + ++++ ++ + k dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 911 DEKDEKLTKILQKYCKSYVDVK 932 3444444444555555555444 PP == domain 5 score: -1.1 bits; conditional E-value: 0.57 ..GEEEESS....S-B---SEEEEEHHHHH.......... CS ResIII 78 iefekknia....vakkdklfgeeqkkskdkeekkkkdke 113 +e+ +k+++ +++ k++++ +++++ +e +++++++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1215 YEEIQKEYQqvptGKDPFKQIKQLKAQVELEEVSFTSNEN 1254 4333333332212444445556666677777788888888 PP .................... CS ResIII 114 iilttiqklhkaleeeeend 133 +++ ++q ++k l+++ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1255 HMVLQVQLFTKHLRSQTNLY 1274 88888888888777655544 PP == domain 6 score: -3.6 bits; conditional E-value: 3.4 HHH............... CS ResIII 101 skdkeekkkkdkeiiltt 118 +++++e ++ dk + + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1538 FQKEKEPDEYDKADQRNK 1555 222222222222221111 PP == domain 7 score: -4.6 bits; conditional E-value: 6 GGGGTGG...GEEEESSS-B- CS ResIII 70 fkkfeskkiefekkniavakk 90 ++k e++ + ++ +i+++++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1708 IQKKENQGTFEKIDQISKENQ 1728 222222222221111111111 PP == domain 8 score: -3.3 bits; conditional E-value: 2.6 S....-EEEEESSHHHHHHHHHHGGGGTGG...GEEEESS CS ResIII 51 r....kflflvprkelleqaleefkkfeskkiefekknia 86 + k+ ++ +++++ e ++ f ++s+ + e ++ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1904 KkefgKVSLIEDETDIKEGKKRFF--IQSEDNNKEVSFEV 1941 234447777777777777777777..44444444444444 PP S-B---SEEEE CS ResIII 87 vakkdklfgee 97 a+++ +++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1942 YAYDQIDAIDQ 1952 44443333333 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.0 1.3 3.2e+03 9 31 .. 210 231 .. 205 238 .. 0.73 2 ! 42.6 0.0 1.6e-14 3.9e-11 12 74 .. 676 738 .. 667 741 .. 0.90 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 1.3 -EEEESTTSTHHHHHHHHHHHHT CS Helicase_C 9 kvailhgelpqnereeileqfna 31 +++++hg+ +q+++++i f++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 210 HIVKCHGSYKQKDNLQIE-TFTK 231 57899*******998874.4555 PP == domain 2 score: 42.6 bits; conditional E-value: 1.6e-14 EESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTT CS Helicase_C 12 ilhgelpqnereeileqfnagkskvlvatnvaerGidlpd 51 ++ + + +++ e +e f++++ +++++t+v e+G d+p+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 676 LVNLDFEVSKQSENIEAFRKKELQIILSTSVTEEGFDIPS 715 556667778999**************************** PP EEEEEESSSSSSHHHHHHHHTTS CS Helicase_C 52 vnvVinfdlprsvtsyiQriGRt 74 +n+Vi f+ + s++Q+ GR+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 716 CNLVISFNKISNLKSFVQIKGRA 738 **********************5 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.4 1.5 4e-10 9.8e-07 2 133 .. 107 278 .. 106 315 .. 0.71 Alignments for each domain: == domain 1 score: 28.4 bits; conditional E-value: 4e-10 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHH...HH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipvi...qi 38 ++Q+e +++ ++ ++ ++ eTG+GKT+++ + + q+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 107 NYQKELFKNSYS-KNSIIYLETGAGKTMIATMLINyffQK 145 579999999996.999*************99855412244 PP HHHTCTT....EEEEEESSHHHHHHHHHHHHHHTTT..SS CS xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxx..xx RF DEAD 39 lletkdq....kalivaPtreLaeqtlnnlkqfkky..pk 72 ++ k++++a t +L++q++ ++k+ ++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 146 QKK---ApqkkKIIFLANTVQLVKQQYAEIKNNLQRisE- 181 444...25555*******************999988851. PP C...........................CEEEETTTSEHH CS x...........................xxxxxxxxxxxx RF DEAD 73 l...........................rvlliiggvala 85 + ++ ++g+ +++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 182 MmendkeisqilkfqeginyrrifekenHIVKCHGSYKQK 221 3444555566677777777777777665333334444422 PP HHHHHHH...........TT.-SEEEEEHHHHHHHHHTTS CS xxxxxxx...........xxxxxxxxxxxxxxxxxxxxxx RF DEAD 86 rdqlsvl...........dngvdivvgTpgrlddlvstgk 114 d+l+ +n ++i v+ + l++ +++g dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 222 -DNLQIEtftkqkwdyllEN-YEIFVMIGQVLLNGLRRGY 259 .3333334455555555355.8999999999999999988 PP SHCTTEEEEEEETHHHHHS CS xxxxxxxxxxxxxxxxxxx RF DEAD 115 lnlsqvrllVlDEadrlls 133 ++++++++++ DE+++ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 260 IRIEDIEVIIYDECHHTRQ 278 89999**********9877 PP >> Dicer_dimer Dicer dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.6 0.0 1.4e-09 3.5e-06 2 77 .. 808 885 .. 807 899 .. 0.79 Alignments for each domain: == domain 1 score: 26.6 bits; conditional E-value: 1.4e-09 HHHHHHHHTTSSS-TT--SS.-EEEEEE--G.-EEEEEE- CS Dicer_dimer 2 iallarYCakLpsdaftklk.pefevekeee.glvctveL 39 ++l + Y+++L + + + k p + +++ + g++c+++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 808 VNLFHTYANQLLYSYDSNIKgPFYYYIEITNvGFICQIIV 847 77889999999887777766355555555555******** PP -TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S- CS Dicer_dimer 40 PlnsplreiegkpmkskklakqsaAfkackkLyelgeL 77 P +s l+++ ++p ++k+ ak++a+f+a++ Ly+ ++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 848 PSQSGLKTFCSNPQAQKEDAKKDACFQAVIILYRQYKI 885 ********************************975443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1965 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 2327 (0.156901); expected 296.6 (0.02) Passed bias filter: 114 (0.0076866); expected 296.6 (0.02) Passed Vit filter: 28 (0.00188794); expected 14.8 (0.001) Passed Fwd filter: 6 (0.000404558); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.80u 0.24s 00:00:01.04 Elapsed: 00:00:00.72 # Mc/sec: 7124.03 // Query: Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 [L=1275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-28 98.0 1.0 1.4e-14 54.4 0.1 5.9 4 Ribonuclease_3 Ribonuclease III domain 1.5e-10 41.1 5.2 5e-05 23.2 0.1 4.2 3 Ribonucleas_3_3 Ribonuclease-III-like Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -23.3 18.0 2 1.5e+04 102 102 .. 471 471 .. 212 635 .. 0.63 2 ! 51.9 0.0 1.2e-17 9e-14 2 113 .. 753 861 .. 752 862 .. 0.93 3 ? -1.1 0.1 0.33 2.5e+03 80 98 .. 926 945 .. 868 1001 .. 0.61 4 ! 54.4 0.1 1.9e-18 1.4e-14 2 113 .. 1049 1162 .. 1048 1163 .. 0.85 Alignments for each domain: == domain 1 score: -23.3 bits; conditional E-value: 2 H CS Ribonuclease_3 102 v 102 + Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 471 F 471 1 PP == domain 2 score: 51.9 bits; conditional E-value: 1.2e-17 HHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSH CS Ribonuclease_3 2 rLefLGDavlklaittylfetypdlhegklsklrsklvsn 41 Le +GD v+k++ + yl+ + p+ +e+ l+ +r+ +++n Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 753 LLEVIGDVVIKYISSLYLYLHLPNQSENALTMIRTIFINN 792 69************************************** PP HHHHHHHHTTTCHCHHBHHHHHHSTT--TSSSSS.SC... CS Ribonuclease_3 42 enlarlakklglpsylresefdppknwlplnkdlangkgr 81 + l a + gl+ y++ + +++ + l n +++ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 793 KYLGISAFRNGLQFYVQTKRPSSYDWRFN----LFNLNSF 828 ************99999888888888877....8888899 PP .............TSHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 82 qsisydlk.eqsiadkvladvvEAliGaiylds 113 +++ +d+k + + + + l+d++E+++G+ y ++ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 829 TEAPQDQKqSFQLSYSNLSDTLESVVGCFYASN 861 99999999999999****************986 PP == domain 3 score: -1.1 bits; conditional E-value: 0.33 ...............TSHHH CS Ribonuclease_3 80 grqsisydlk.eqsiadkvl 98 ++ +i+ ++k eq+ ++k+ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 926 KEFEIQANKKmEQCFEEKIQ 945 22333334444555555554 PP == domain 4 score: 54.4 bits; conditional E-value: 1.9e-18 HHHHHHHHHHHHHHHHHHHH....HSTTS.SHHHHHHHHH CS Ribonuclease_3 2 rLefLGDavlklaittylfe....typdl.hegklsklrs 36 LefLGDa+++++++++ ++ + +++ ++ +++++s Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 1049 ILEFLGDALIEILVVSHGYHisrnRQKKInSPYFFCEMKS 1088 69*****************977654466656********* PP HHTSHHHHHHHHHTTTCHCHHBHHHHHHSTT--TSSSSS. CS Ribonuclease_3 37 klvsnenlarlakklglpsylresefdppknwlplnkdla 76 l sn++++r+a+ +++ y + ++ ++ + ++ +d++ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 1089 LLLSNDFMSRMAILNKFHYYALNISKYQQDEIIQFIEDCN 1128 *************999999999888888888888999999 PP SC...............TSHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 77 ngkgrqsisydlkeqsiadkvladvvEAliGaiylds 113 +++++++ ++q ++kvl+d++E+++Gai +ds Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 1129 LNTKFKES---VSHQANSPKVLGDLWESVAGAIIMDS 1162 88866554...3356678*****************98 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.1 0.31 2.3e+03 40 76 .. 29 64 .. 10 111 .. 0.63 2 ! 17.2 0.0 4.9e-07 0.0036 12 111 .. 743 861 .. 732 873 .. 0.72 3 ! 23.2 0.1 6.7e-09 5e-05 1 117 [. 1024 1168 .. 1024 1178 .. 0.64 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 0.31 Ribonucleas_3_3 40 yllekakkdegeltkklaslvseeslaeiakelgLgk 76 ++++k d+g++ k+l+++ +++ +i +++L++ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 29 KKTKQKKIDKGQSKKRLTAIK-QKQGYDIKMDMQLSQ 64 234445556666666665554.444455555555554 PP == domain 2 score: 17.2 bits; conditional E-value: 4.9e-07 Ribonucleas_3_3 12 kSyangrkgyNerLefLGdavLelvvseyllek.akkdeg 50 Sy ++++ e Le++Gd v++ ++s yl+ + ++++e Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 743 ISY--SKTKNLELLEVIGDVVIKYISSLYLYLHlPNQSEN 780 344..467899**************999987664889999 PP Ribonucleas_3_3 51 eltkklaslvseeslaeiakelgLgkvlrl.......... 80 lt ++ +++++ l a + gL+ +++ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 781 ALTMIRTIFINNKYLGISAFRNGLQFYVQTkrpssydwrf 820 999999999******9999999988888876666666666 PP Ribonucleas_3_3 81 ........rkgeeetessgrek..vladaleAliGAiyld 110 + ++++++s + + l+d+le+++G y Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 821 nlfnlnsfTEAPQDQKQSFQLSysNLSDTLESVVGCFYAS 860 6666655544444444444433347788888888877766 PP Ribonucleas_3_3 111 k 111 + Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 861 N 861 5 PP == domain 3 score: 23.2 bits; conditional E-value: 6.7e-09 Ribonucleas_3_3 1 deelllqaltHkSyangrk..gyNerLefLGdavLelvvs 38 d++ll +al S +n ++ + ++ LefLGda++e++v+ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 1024 DKSLLIKALNCHSNSNFEHyfQDYQILEFLGDALIEILVV 1063 68999999998888876554588*************7655 PP Ribonucleas_3_3 39 e..yllekakkdege....ltkklaslvseeslaeiakel 72 y + + ++++ + ++++ l+s++ ++++a Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 1064 ShgYHISRNRQKKINspyfFCEMKSLLLSNDFMSRMAILN 1103 5133344444444445555234444466666666666554 PP Ribonucleas_3_3 73 g.................Lgkvlrl.......rkgeee.t 87 + + k +e+ + Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 1104 KfhyyalniskyqqdeiiQ-----FiedcnlnTKFKESvS 1138 4445555555666555440.....2444444444444426 PP Ribonucleas_3_3 88 essgrekvladaleAliGAiyldkGaeeak 117 + + kvl+d+ e++ GAi +d+++++ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 1139 HQANSPKVLGDLWESVAGAIIMDSDISTFV 1168 6667788****************9987765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1275 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 2516 (0.169645); expected 296.6 (0.02) Passed bias filter: 126 (0.00849572); expected 296.6 (0.02) Passed Vit filter: 10 (0.000674263); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.91 # Mc/sec: 3657.33 // Query: Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 [L=2249] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-60 202.7 0.0 3.9e-35 120.7 0.0 3.1 2 Ribonuclease_3 Ribonuclease III domain 2.5e-37 127.1 0.0 7.2e-37 125.7 0.0 1.8 1 PAZ PAZ domain 3.7e-29 100.3 0.2 3.7e-28 97.1 0.0 2.6 2 Dicer_dimer Dicer dimerisation domain 3.2e-26 91.7 0.2 6.7e-16 58.4 0.0 4.5 3 Ribonucleas_3_3 Ribonuclease-III-like 1.3e-17 63.3 0.0 3.3e-17 62.1 0.0 1.7 1 Helicase_C Helicase conserved C-terminal domain Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 120.7 0.0 1.3e-38 3.9e-35 1 114 [] 1742 1919 .. 1742 1919 .. 0.92 2 ! 78.8 0.0 1.3e-25 3.9e-22 1 113 [. 2029 2149 .. 2029 2150 .. 0.80 Alignments for each domain: == domain 1 score: 120.7 bits; conditional E-value: 1.3e-38 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHT CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakk 50 erLe++GD++lk+aittyl+ ty+++hegkls+lrsk v n nl+rl+++ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1742 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRR 1791 8************************************************* PP TTCHCHHBHHHHHHSTT--T........SSSSS.SC.............. CS Ribonuclease_3 51 lglpsylresefdppknwlp........lnkdlangk............. 79 ++l +y+++ +f+p++nwlp l+k l ++k Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1792 KRLGEYMIATKFEPHDNWLPpcyyvpkeLEKALIEAKipthhwkladlld 1841 ************************88885555555557777778888999 PP .................................................. CS Ribonuclease_3 80 ..........................................grqsisyd 87 +++ i y+ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1842 iknlssvqicemvrekadalgleqnggaqngqlddsndscndFSCFIPYN 1891 999999999999999999999999999999999999888888889***** PP .......TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 88 lk.eqsiadkvladvvEAliGaiyldsg 114 l ++si dk++ad+vEAliGa+++++g Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1892 LVsQHSIPDKSIADCVEALIGAYLIECG 1919 ***************************8 PP == domain 2 score: 78.8 bits; conditional E-value: 1.3e-25 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHT CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakk 50 +rLefLGDavl+++it++l+e + + ++g l++lrs+lv+n+ a la + Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 2029 QRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVR 2078 7********************99999************************ PP TTCHCHHBHHHHHHSTT--T...SSSSS.SC................... CS Ribonuclease_3 51 lglpsylresefdppknwlp...lnkdlangk...........grqsisy 86 +g+++++r+ + + + + + +++ng+ + + Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 2079 HGFHKFFRHLSPGLNDVIDRfvrI--QQENGHciseeyyllseE-----E 2121 ********8777777666668441..444444555555444221.....2 PP ........TSHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 87 dlk.eqsiadkvladvvEAliGaiylds 113 + e +k l+dv+E+++Gai+lds Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 2122 CDDaEDVEVPKALGDVFESIAGAIFLDS 2149 233466678*****************98 PP >> PAZ PAZ domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 125.7 0.0 2.4e-40 7.2e-37 6 133 .. 1111 1267 .. 1100 1269 .. 0.94 Alignments for each domain: == domain 1 score: 125.7 bits; conditional E-value: 2.4e-40 HHHHCCCSSSHCCTSHHHHHHHHHTTEEEEETTSCGG..EEEEEEEEECC CS PAZ 6 flerilkqetrrqkkfrkklakalkglivlttyrnne..rkyriadisee 53 ++r +e+r+ + f + + +++++v+++yrn++ +++++a+i+++ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1111 TMPRAVPDEERQAQPF---DPQRFQDAVVMPWYRNQDqpQYFYVAEICPH 1157 5666666677777667...779**************************** PP ETTTSEEEETTTEEEEHHHHHHHCCT---SSTTSEEEEEECSSSS..... CS PAZ 54 ptpestfpdkegkeitvaeYfkkkYnielkypnqplldvkktsrr..... 98 +p s+fp + ++ t+++Y+ kY+++++++ qplldv++ts+r Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1158 LSPLSCFPGD--NYRTFKHYYLVKYGLTIQNTSQPLLDVDHTSARlnflt 1205 **********..************************************** PP ...........................SEEEE-CCCEEEETTT---S--X CS PAZ 99 ...........................qeqylppElcdivplqrslkkdf 121 q+q+l+pElc+++p+++sl++++ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1206 pryvnrkgvalptsseetkrakrenleQKQILVPELCTVHPFPASLWRTA 1255 ************************************************** PP XXXXXXXXXXXX CS PAZ 122 aaqksilyrtra 133 +++++ilyr++ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1256 VCLPCILYRING 1267 *********985 PP >> Dicer_dimer Dicer dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 97.1 0.0 1.3e-31 3.7e-28 1 89 [. 825 918 .. 825 920 .. 0.97 2 ? -0.5 0.1 0.34 1e+03 54 77 .. 2222 2245 .. 2217 2248 .. 0.89 Alignments for each domain: == domain 1 score: 97.1 bits; conditional E-value: 1.3e-31 HHHHHHHHHTTSSS-TT--SS-EEEEEE--G....-EEEEEE--TT-SS--. CS Dicer_dimer 1 aiallarYCakLpsdaftklkpefevekeee....glvctveLPlnsplre. 47 aial+++YCa+Lpsd+ftkl++ ++++++e+ +++t++LP+nspl++ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 825 AIALVNKYCARLPSDTFTKLTALWRCTRNERagvtLFQYTLRLPINSPLKHd 876 799***************************999989999************* PP EEEE--SSHHHHHHHHHHHHHHHHHHH-S-TTTS--HHHH-S CS Dicer_dimer 48 iegkpmkskklakqsaAfkackkLyelgeLndhLlPvkkerv 89 i+g pm+++ la++ aA++ac +L+++geL+d+L+P++ke + Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 877 IVGLPMPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGF 918 *************************************99976 PP == domain 2 score: -0.5 bits; conditional E-value: 0.34 SSHHHHHHHHHHHHHHHHHHH-S- CS Dicer_dimer 54 kskklakqsaAfkackkLyelgeL 77 ++ ++ak++aA a ++L + g++ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 2222 RNYRIAKCTAAKCALRQLKKQGLI 2245 5789***************99987 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.0 0.0 9.9e-09 2.9e-05 5 81 .. 1726 1801 .. 1722 1808 .. 0.80 2 ? 2.9 0.0 0.033 98 93 112 .. 1900 1919 .. 1892 1928 .. 0.77 3 ! 58.4 0.0 2.3e-19 6.7e-16 1 113 [. 2006 2151 .. 2006 2155 .. 0.88 Alignments for each domain: == domain 1 score: 24.0 bits; conditional E-value: 9.9e-09 Ribonucleas_3_3 5 llqaltHkSyangrkg.yNerLefLGdavLelvvseyll.ekakkdegel 52 +lqalt +n++ g + erLe +Gd+ L+ ++++yl+ + + eg+l Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1726 ILQALTM---SNANDGiNLERLETIGDSFLKYAITTYLYiTYENVHEGKL 1772 5666663...344444155*****************9861557779**** PP Ribonucleas_3_3 53 tkklaslvseeslaeiakelgLgkvlrlr 81 + +++ v + +l +++++ +Lg+++ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1773 SHLRSKQVANLNLYRLGRRKRLGEYMIAT 1801 **************************874 PP == domain 2 score: 2.9 bits; conditional E-value: 0.033 Ribonucleas_3_3 93 ekvladaleAliGAiyldkG 112 +k +ad++eAliGA ++ G Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1900 DKSIADCVEALIGAYLIECG 1919 55679*********777666 PP == domain 3 score: 58.4 bits; conditional E-value: 2.3e-19 Ribonucleas_3_3 1 deelllqaltHkSya.ngrkgyNerLefLGdavLelvvseyllekakk.d 48 d+++llqa+tH Sy n +++++rLefLGdavL+ +++++l+e++++ + Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 2006 DRSYLLQAMTHASYTpNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQhS 2055 57899*********7255589************************86626 PP Ribonucleas_3_3 49 egeltkklaslvseeslaeiakelg......................... 73 g lt +++lv+++ a +a ++g Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 2056 PGALTDLRSALVNNTIFASLAVRHGfhkffrhlspglndvidrfvriqqe 2105 799**********************99*************9999999999 PP Ribonucleas_3_3 74 .....Lgkvlrl.rkgeeetessgrekvladaleAliGAiyldkGa 113 +++ +l +++ ++ e + k l+d++e++ GAi+ld+ + Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 2106 nghciSEEYYLLsEEECDDAEDVEVPKALGDVFESIAGAIFLDSNM 2151 999976777777444455678888899***************9865 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.1 0.0 1.1e-20 3.3e-17 15 76 .. 544 604 .. 519 606 .. 0.93 Alignments for each domain: == domain 1 score: 62.1 bits; conditional E-value: 1.1e-20 TTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHH CS Helicase_C 15 gelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvts 66 +el+++ +ee+l++f+ ++++vl+ t+v+e+Gid+p++n+V+ +d+p++++s Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 544 AELEHRRQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRS 595 58999*********************************************** PP HHHHHTTSST CS Helicase_C 67 yiQriGRtgR 76 y+Q+ GR +R Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 596 YVQCKGR-AR 604 *******.55 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2249 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 642 (0.0432877); expected 296.6 (0.02) Passed bias filter: 223 (0.0150361); expected 296.6 (0.02) Passed Vit filter: 33 (0.00222507); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.78u 0.32s 00:00:01.10 Elapsed: 00:00:01.25 # Mc/sec: 4696.51 // Query: Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 [L=1721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-48 163.6 0.0 6.3e-23 81.3 0.0 2.7 2 Ribonuclease_3 Ribonuclease III domain 9.1e-31 105.5 0.2 3e-30 103.8 0.0 2.1 2 Dicer_dimer Dicer dimerisation domain 6.6e-25 87.5 0.1 1.1e-12 48.0 0.0 4.5 4 Ribonucleas_3_3 Ribonuclease-III-like 1.2e-15 57.8 0.0 2.4e-12 47.2 0.1 3.0 2 dsrm Double-stranded RNA binding motif 3e-14 52.8 0.0 7.8e-14 51.5 0.0 1.7 1 DEAD DEAD/DEAH box helicase 1.9e-12 46.8 0.0 7.3e-12 44.9 0.0 2.0 2 Helicase_C Helicase conserved C-terminal domain 1.6e-11 44.4 0.0 4.5e-11 42.9 0.0 1.8 1 ResIII Type III restriction enzyme, res subunit 4.1e-09 35.8 0.4 9.5e-09 34.6 0.3 1.6 1 PAZ PAZ domain ------ inclusion threshold ------ 0.019 15.1 0.0 0.094 12.8 0.0 2.2 1 AAA_22 AAA domain Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.6 0.0 1.4e-25 2.2e-22 1 113 [. 1209 1380 .. 1209 1381 .. 0.87 2 ! 81.3 0.0 3.8e-26 6.3e-23 1 113 [. 1468 1626 .. 1468 1627 .. 0.83 Alignments for each domain: == domain 1 score: 79.6 bits; conditional E-value: 1.4e-25 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 erLe+LGD++lkl +t yl ++y+d++eg l++ +sklvs Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1209 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVS 1248 8*************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T.......... CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp.......... 70 n+nl +++++ ++p+ l+ f+p+ wlp Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1249 NRNLLFCLIDADIPKTLNTIQFTPRYTWLPpgislphnvl 1288 ******************************9999888887 PP .........SSSSS.SC....................... CS Ribonuclease_3 71 .........lnkdlangk...................... 79 k Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1289 alwrenpefA-------Kiigphnlrdlalgdeeslvkgn 1321 7755555550.......25555555556666688888899 PP .......................................T CS Ribonuclease_3 80 ........................grqsisydlk.eqsia 94 +++s + i Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1322 csdinynrfvegcrangqsfyagaDFSSEVNFCVgLVTIP 1361 999999999999999999999988778888889999**** PP SHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 95 dkvladvvEAliGaiylds 113 +kv+ad++EAl+G+i+ ++ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1362 NKVIADTLEALLGVIVKNY 1380 **************98765 PP == domain 2 score: 81.3 bits; conditional E-value: 3.8e-26 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 + Lef+GDa+l+++i+ y+fe+++++++g l++lrs+lv+ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1468 QELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVN 1507 68************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T.......... CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp.......... 70 n++la ++ +++l+ ++ +++ ++++ + + Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1508 NTTLACICVRHRLHFFILAENAKLSEIISKfvnfqesqgh 1547 ************************9999999775544444 PP SSSSS.SC................................ CS Ribonuclease_3 71 lnkdlangk............................... 79 Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1548 R-------Vtnyvrilleeadvqptpldlddeldmtelph 1580 0.......25566666666666677788888888888888 PP ...............................TSHHHHHHH CS Ribonuclease_3 80 .................grqsisydlkeqsiadkvladvv 102 +++ +++ +k l+dv+ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1581 ankcisqeaekgvppkgEFNMSTNVD-----VPKALGDVL 1615 88888888888888886555554444.....5******** PP HHHHHHHHHHT CS Ribonuclease_3 103 EAliGaiylds 113 EAli+a+yld+ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1616 EALIAAVYLDC 1626 **********9 PP >> Dicer_dimer Dicer dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 103.8 0.0 1.8e-33 3e-30 1 90 [. 571 673 .. 571 674 .. 0.97 2 ? -4.1 0.1 8.1 1.3e+04 53 72 .. 1698 1717 .. 1677 1719 .. 0.78 Alignments for each domain: == domain 1 score: 103.8 bits; conditional E-value: 1.8e-33 HHHHHHHHHTTSSS-TT--SS-EEEEEE--G......... CS Dicer_dimer 1 aiallarYCakLpsdaftklkpefevekeee......... 31 a+a+l+rYC+++p+daf+++ p+f+v +e+e Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 571 ALAILHRYCQTIPTDAFGFVIPWFHVLQEDErdrifgvsa 610 789***************************99******** PP ..-EEEEEE--TT-SS--.EEEE--SSHHHHHHHHHHHHH CS Dicer_dimer 32 ..glvctveLPlnsplre.iegkpmkskklakqsaAfkac 68 ++v+++++P+n++lr+ i+++pm+++k+ak saAfkac Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 611 kgKHVISINMPVNCMLRDtIYSDPMDNVKTAKISAAFKAC 650 **************************************** PP HHHHHH-S-TTTS--H.HHH-S- CS Dicer_dimer 69 kkLyelgeLndhLlPv.kkerva 90 k Ly+lgeLn++++P+ kerva Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 651 KVLYSLGELNERFVPKtLKERVA 673 ****************8888875 PP == domain 2 score: -4.1 bits; conditional E-value: 8.1 -SSHHHHHHHHHHHHHHHHH CS Dicer_dimer 53 mkskklakqsaAfkackkLy 72 ++k ak saA a ++L Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1698 GSNKDQAKLSAAKHALQQLS 1717 56788999999999999986 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 0.0 6.2e-07 0.001 23 78 .. 1209 1265 .. 1195 1273 .. 0.88 2 ? 5.4 0.0 0.01 17 93 120 .. 1362 1389 .. 1359 1394 .. 0.89 3 ! 48.0 0.0 6.6e-16 1.1e-12 2 81 .. 1446 1527 .. 1445 1543 .. 0.86 4 ! 9.0 0.0 0.00073 1.2 92 110 .. 1607 1625 .. 1595 1637 .. 0.84 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 6.2e-07 Ribonucleas_3_3 23 erLefLGdavLelvvseyllekakk.degeltkklaslvs 61 erLe LGd+ L+l+ + yl k+++ +eg lt+ +++lvs Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1209 ERLEILGDSFLKLSATLYLASKYSDwNEGTLTEVKSKLVS 1248 9*****************9888655499************ PP Ribonucleas_3_3 62 eeslaeiakelgLgkvl 78 +++l + + ++ k+l Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1249 NRNLLFCLIDADIPKTL 1265 ****9998888887766 PP == domain 2 score: 5.4 bits; conditional E-value: 0.01 Ribonucleas_3_3 93 ekvladaleAliGAiyldkGaeeakefv 120 +kv+ad+leAl+G i + G+++a +++ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1362 NKVIADTLEALLGVIVKNYGLQHAFKML 1389 689******************9998775 PP == domain 3 score: 48.0 bits; conditional E-value: 6.6e-16 Ribonucleas_3_3 2 eelllqaltHkSy.angrkgyNerLefLGdavLelvvsey 40 + +llqaltH Sy n +g+++ Lef+Gda+L++++s+y Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1446 RRYLLQALTHPSYpTNRITGSYQELEFIGDAILDFLISAY 1485 67899********4456689******************** PP Ribonucleas_3_3 41 llek.akkdegeltkklaslvseeslaeiakelgLgkvlr 79 ++e+ +k++ g lt +++lv++++la i +++L +++ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1486 IFENnTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1525 **993455789******************99999988877 PP Ribonucleas_3_3 80 lr 81 + Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1526 AE 1527 64 PP == domain 4 score: 9.0 bits; conditional E-value: 0.00073 Ribonucleas_3_3 92 rekvladaleAliGAiyld 110 k l+d+leAli+A+yld Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1607 VPKALGDVLEALIAAVYLD 1625 56789*************8 PP >> dsrm Double-stranded RNA binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.3 0.0 0.0043 7 49 67 .] 634 653 .. 575 653 .. 0.86 2 ! 47.2 0.1 1.4e-15 2.4e-12 1 67 [] 1652 1716 .. 1652 1716 .. 0.98 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0043 ES.SHHHHHHHHHHHHHHHH CS dsrm 49 gs.sKKeAeqlAAekALqkL 67 + + K A+ +AA kA+++L Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 634 PMdNVKTAKISAAFKACKVL 653 4449*************987 PP == domain 2 score: 47.2 bits; conditional E-value: 1.4e-15 HHHHHHHHHHHTTSCCEEEEEEEESSTSSSE.EEEE...E CS dsrm 1 pkskLqelcqkkgkppnyeyvseegpphslk.kFtv...t 36 p++++++l+++k+ +p++ ++++eg + + +Ft+ t Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1652 PINHIRQLVEHKHAKPVFSSPIVEGETVMVScQFTCmekT 1691 89****************************9*****9999 PP EEETTEEEEEEEESSHHHHHHHHHHHHHHHH CS dsrm 37 vkvngklygtGvgssKKeAeqlAAekALqkL 67 +kv +G+gs+K++A+ +AA++ALq+L Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1692 IKV------YGFGSNKDQAKLSAAKHALQQL 1716 999......********************98 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.5 0.0 4.7e-17 7.8e-14 8 138 .. 16 152 .. 9 179 .. 0.77 Alignments for each domain: == domain 1 score: 51.5 bits; conditional E-value: 4.7e-17 HHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx. RF DEAD 8 iplilgggdvlvaaeTGsGKTlaflipviqillet.kdq. 45 ++++ +++ +v +TGsGKT ++++ v++++ + + + Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 16 VDHLT-KSNGIVYLPTGSGKTFVAIL-VLKRFSQDfD-Kp 52 55444.588899***********987.6777877644.35 PP ......EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEET CS ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 ......kalivaPtreLaeqtlnnlkqfkkypklrvllii 79 +al+++ t eLa+q++ ++++++ +v ++ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 53 iesggkRALFMCNTVELARQQAMAVRRCTNF---KVGFYV 89 999999***********************87...999999 PP TTSEHHHHHHHHH....TT.-SEEEEEHHHHHHHHHTTSS CS xxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx RF DEAD 80 ggvalardqlsvl....dngvdivvgTpgrlddlvstgkl 115 g++ + d ++ + ++ +++vgT + ++d+v ++ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 90 GEQGVD-DWTRGMwsdeIKKNQVLVGTAQVFLDMVTQTYV 128 988766.44444446775668***************9988 PP HCTTEEEEEEETHHHHHST.TTHH CS xxxxxxxxxxxxxxxxxxx.xxxx RF DEAD 116 nlsqvrllVlDEadrllsq.gfsd 138 ls+++++++DE+++ f++ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 129 ALSSLSVVIIDECHHGTGHhPFRE 152 *************98666524444 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 44.9 0.0 4.4e-15 7.3e-12 20 74 .. 441 495 .. 433 498 .. 0.92 2 ? -4.3 0.0 9 1.5e+04 17 34 .. 907 924 .. 905 932 .. 0.83 Alignments for each domain: == domain 1 score: 44.9 bits; conditional E-value: 4.4e-15 HHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESS CS Helicase_C 20 nereeileqfnagkskvlvatnvaerGidlpdvnvVinfd 59 + ++ ++qf++g+ + +++++v+e+Gid++++n+V+++d Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 441 KWQKSAIQQFRDGNANLMICSSVLEEGIDVQACNHVFILD 480 567899********************************** PP SSSSHHHHHHHHTTS CS Helicase_C 60 lprsvtsyiQriGRt 74 + ++ y+Q GR+ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 481 PVKTFNMYVQSKGRA 495 **************5 PP == domain 2 score: -4.3 bits; conditional E-value: 9 STHHHHHHHHHHHHTTSS CS Helicase_C 17 lpqnereeileqfnagks 34 +++n+++++ +f+ +k+ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 907 MEKNQQDKTYYEFTMSKY 924 8999****9999999887 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.9 0.0 2.7e-14 4.5e-11 2 179 .. 6 172 .. 5 176 .. 0.73 Alignments for each domain: == domain 1 score: 42.9 bits; conditional E-value: 2.7e-14 -EE-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHH CS ResIII 2 lklrpyQeeaienllesiekedekkrglivmaTGtGKTlv 41 +k+r yQ + ++ l k +g++ ++TG+GKT+v Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 6 IKPRGYQLRLVDHLT--------KSNGIVYLPTGSGKTFV 37 566777777777776........679************** PP HHHHHHHH-S............-EEEEESSHHHHHHHHHH CS ResIII 42 aasliarlar............kflflvprkelleqalee 69 a+ l+++ ++ ++lf +++ el q + Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 38 AI-LVLKRFSqdfdkpiesggkRALFMCNTVELARQQAMA 76 **.555555559999***********************99 PP GGGGTGG...GEEEESSS-B---SEEEEEHHHHH...... CS ResIII 70 fkkfeskkiefekkniavakkdklfgeeqkkskdkeekkk 109 +++f+ ++ +++ + + +++e Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 77 V----RRCTNFKVGFY----VGEQGVDDWTRGMWSDE--I 106 9....55555544444....44334444444444334..4 PP ............................HTHHHHTTT-SE CS ResIII 110 kdkeiilttiqklhkaleeeeendeskseslealldefdv 149 k++++++ t+q + +++ l v Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 107 KKNQVLVGTAQVFLDMVTQ-----------TYVALSSLSV 135 6789999999999988764...........556677899* PP EEEETGGGTTSTT.THHHHH.......---SEEEEEE CS ResIII 150 iiiDEaHrlsakkkyreile.......fkkafllglT 179 +iiDE+H+ + + +re ++ k + ++glT Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 136 VIIDECHHGTGHHPFREFMRlftianqTKLPRVVGLT 172 **********999988887766654444444446665 PP >> PAZ PAZ domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.6 0.3 5.7e-12 9.5e-09 4 130 .. 848 997 .. 844 999 .. 0.84 Alignments for each domain: == domain 1 score: 34.6 bits; conditional E-value: 5.7e-12 HHHHHHCCCSSSHCCTSHHHH......HHHHHTTEEEEET CS PAZ 4 leflerilkqetrrqkkfrkk......lakalkglivltt 37 + +++r++++ +++ +++ +++ g iv+ + Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 848 MTNFRRLPQSHGSNV---QQReqqpapRPEDFEGKIVTQW 884 333444444333333...33333477799*********** PP TSCGGEEEEEEEEECCETTTSEEEETTTEEEEHHHHHHHC CS PAZ 38 yrnnerkyriadiseeptpestfpdkegkeitvaeYfkkk 77 y n ++ ++++++e tp s +++ ++ t++e+ k Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 885 YANYDKPMLVTKVHRELTPLSYMEKN-QQDKTYYEFTMSK 923 **************************.************* PP CT---S...STTSEEEEEECSSSS................ CS PAZ 78 Ynielk...ypnqplldvkktsrr................ 98 Y+ ++ +++ ++ v+ + + Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 924 YGNRIGdvvHKDKFMIEVRDLTEQltfyvhnrgkfnaksk 963 **99861215799*******9999**************** PP ..SEEEE-CCCEEEETTT---S--XXXXXXXXXX CS PAZ 99 ..qeqylppElcdivplqrslkkdfaaqksilyr 130 +++l+pElc+ +++ l+ + ++sil r Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 964 akMKVILIPELCFNFNFPGDLWLKLIFLPSILNR 997 **********************999999998765 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 5.7e-05 0.094 4 120 .. 21 168 .. 17 173 .. 0.74 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 5.7e-05 AAA_22 4 agilvvtGesGvGKTtlarrlaeqldevaeaae...karv 40 ++ ++v+ ++G+GKT++a +++++ + + +r+ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 21 KSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIesgGKRA 60 66789999*************9999876665558995555 PP AAA_22 41 vfveapsst.spkellkkllralglpakg........... 68 +f+ + + +++++ + + +++++ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 61 LFMCNTVELaRQQAMAVRRCTNFKVGFYVgeqgvddwtrg 100 5444444443777778888888887776687788888888 PP AAA_22 69 ...........rltteell.eallralrrrrv.glliiDE 95 +t++++ ++++++ + + ++iiDE Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 101 mwsdeikknqvLVGTAQVFlDMVTQTYVALSSlSVVIIDE 140 888887777774444444447777777777779******* PP AAA_22 96 aqhLr...seelleelrdlldetgvklv 120 +h + + + + l +++++t+++ v Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 141 CHHGTghhPFREFMRLFTIANQTKLPRV 168 ***6556548888888899999998865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1721 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 584 (0.039377); expected 296.6 (0.02) Passed bias filter: 314 (0.0211719); expected 296.6 (0.02) Passed Vit filter: 33 (0.00222507); expected 14.8 (0.001) Passed Fwd filter: 9 (0.000606837); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 0.61u 0.41s 00:00:01.02 Elapsed: 00:00:01.68 # Mc/sec: 2674.04 // Query: Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 [L=1722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-48 163.6 0.0 6.3e-23 81.3 0.0 2.7 2 Ribonuclease_3 Ribonuclease III domain 9e-31 105.5 0.2 3e-30 103.8 0.0 2.1 2 Dicer_dimer Dicer dimerisation domain 6.6e-25 87.5 0.1 1.1e-12 48.0 0.0 4.5 4 Ribonucleas_3_3 Ribonuclease-III-like 1.2e-15 57.8 0.0 2.4e-12 47.2 0.1 3.1 2 dsrm Double-stranded RNA binding motif 3e-14 52.8 0.0 7.8e-14 51.5 0.0 1.7 1 DEAD DEAD/DEAH box helicase 1.9e-12 46.8 0.0 7.3e-12 44.9 0.0 2.0 2 Helicase_C Helicase conserved C-terminal domain 1.6e-11 44.3 0.0 4.5e-11 42.9 0.0 1.8 1 ResIII Type III restriction enzyme, res subunit 4.1e-09 35.8 0.4 9.5e-09 34.6 0.3 1.6 1 PAZ PAZ domain ------ inclusion threshold ------ 0.019 15.1 0.0 0.095 12.8 0.0 2.2 1 AAA_22 AAA domain Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.6 0.0 1.4e-25 2.2e-22 1 113 [. 1210 1381 .. 1210 1382 .. 0.87 2 ! 81.3 0.0 3.8e-26 6.3e-23 1 113 [. 1469 1627 .. 1469 1628 .. 0.83 Alignments for each domain: == domain 1 score: 79.6 bits; conditional E-value: 1.4e-25 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 erLe+LGD++lkl +t yl ++y+d++eg l++ +sklvs Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1210 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVS 1249 8*************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T.......... CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp.......... 70 n+nl +++++ ++p+ l+ f+p+ wlp Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1250 NRNLLFCLIDADIPKTLNTIQFTPRYTWLPpgislphnvl 1289 ******************************9999888887 PP .........SSSSS.SC....................... CS Ribonuclease_3 71 .........lnkdlangk...................... 79 k Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1290 alwrenpefA-------Kiigphnlrdlalgdeeslvkgn 1322 7755555550.......25555555556666688888899 PP .......................................T CS Ribonuclease_3 80 ........................grqsisydlk.eqsia 94 +++s + i Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1323 csdinynrfvegcrangqsfyagaDFSSEVNFCVgLVTIP 1362 999999999999999999999988778888889999**** PP SHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 95 dkvladvvEAliGaiylds 113 +kv+ad++EAl+G+i+ ++ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1363 NKVIADTLEALLGVIVKNY 1381 **************98765 PP == domain 2 score: 81.3 bits; conditional E-value: 3.8e-26 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 + Lef+GDa+l+++i+ y+fe+++++++g l++lrs+lv+ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1469 QELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVN 1508 68************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T.......... CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp.......... 70 n++la ++ +++l+ ++ +++ ++++ + + Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1509 NTTLACICVRHRLHFFILAENAKLSEIISKfvnfqesqgh 1548 ************************9999999775544444 PP SSSSS.SC................................ CS Ribonuclease_3 71 lnkdlangk............................... 79 Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1549 R-------Vtnyvrilleeadvqptpldlddeldmtelph 1581 0.......25566666666666677788888888888888 PP ...............................TSHHHHHHH CS Ribonuclease_3 80 .................grqsisydlkeqsiadkvladvv 102 +++ +++ +k l+dv+ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1582 ankcisqeaekgvppkgEFNMSTNVD-----VPKALGDVL 1616 88888888888888886555554444.....5******** PP HHHHHHHHHHT CS Ribonuclease_3 103 EAliGaiylds 113 EAli+a+yld+ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1617 EALIAAVYLDC 1627 **********9 PP >> Dicer_dimer Dicer dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 103.8 0.0 1.8e-33 3e-30 1 90 [. 571 673 .. 571 674 .. 0.97 2 ? -4.1 0.1 8.1 1.3e+04 53 72 .. 1699 1718 .. 1678 1720 .. 0.78 Alignments for each domain: == domain 1 score: 103.8 bits; conditional E-value: 1.8e-33 HHHHHHHHHTTSSS-TT--SS-EEEEEE--G......... CS Dicer_dimer 1 aiallarYCakLpsdaftklkpefevekeee......... 31 a+a+l+rYC+++p+daf+++ p+f+v +e+e Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 571 ALAILHRYCQTIPTDAFGFVIPWFHVLQEDErdrifgvsa 610 789***************************99******** PP ..-EEEEEE--TT-SS--.EEEE--SSHHHHHHHHHHHHH CS Dicer_dimer 32 ..glvctveLPlnsplre.iegkpmkskklakqsaAfkac 68 ++v+++++P+n++lr+ i+++pm+++k+ak saAfkac Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 611 kgKHVISINMPVNCMLRDtIYSDPMDNVKTAKISAAFKAC 650 **************************************** PP HHHHHH-S-TTTS--H.HHH-S- CS Dicer_dimer 69 kkLyelgeLndhLlPv.kkerva 90 k Ly+lgeLn++++P+ kerva Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 651 KVLYSLGELNERFVPKtLKERVA 673 ****************8888875 PP == domain 2 score: -4.1 bits; conditional E-value: 8.1 -SSHHHHHHHHHHHHHHHHH CS Dicer_dimer 53 mkskklakqsaAfkackkLy 72 ++k ak saA a ++L Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1699 GSNKDQAKLSAAKHALQQLS 1718 56788999999999999986 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 0.0 6.2e-07 0.001 23 78 .. 1210 1266 .. 1196 1274 .. 0.88 2 ? 5.4 0.0 0.01 17 93 120 .. 1363 1390 .. 1360 1395 .. 0.89 3 ! 48.0 0.0 6.6e-16 1.1e-12 2 81 .. 1447 1528 .. 1446 1544 .. 0.86 4 ! 9.0 0.0 0.00073 1.2 92 110 .. 1608 1626 .. 1596 1638 .. 0.84 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 6.2e-07 Ribonucleas_3_3 23 erLefLGdavLelvvseyllekakk.degeltkklaslvs 61 erLe LGd+ L+l+ + yl k+++ +eg lt+ +++lvs Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1210 ERLEILGDSFLKLSATLYLASKYSDwNEGTLTEVKSKLVS 1249 9*****************9888655499************ PP Ribonucleas_3_3 62 eeslaeiakelgLgkvl 78 +++l + + ++ k+l Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1250 NRNLLFCLIDADIPKTL 1266 ****9998888887766 PP == domain 2 score: 5.4 bits; conditional E-value: 0.01 Ribonucleas_3_3 93 ekvladaleAliGAiyldkGaeeakefv 120 +kv+ad+leAl+G i + G+++a +++ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1363 NKVIADTLEALLGVIVKNYGLQHAFKML 1390 689******************9998775 PP == domain 3 score: 48.0 bits; conditional E-value: 6.6e-16 Ribonucleas_3_3 2 eelllqaltHkSy.angrkgyNerLefLGdavLelvvsey 40 + +llqaltH Sy n +g+++ Lef+Gda+L++++s+y Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1447 RRYLLQALTHPSYpTNRITGSYQELEFIGDAILDFLISAY 1486 67899********4456689******************** PP Ribonucleas_3_3 41 llek.akkdegeltkklaslvseeslaeiakelgLgkvlr 79 ++e+ +k++ g lt +++lv++++la i +++L +++ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1487 IFENnTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1526 **993455789******************99999988877 PP Ribonucleas_3_3 80 lr 81 + Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1527 AE 1528 64 PP == domain 4 score: 9.0 bits; conditional E-value: 0.00073 Ribonucleas_3_3 92 rekvladaleAliGAiyld 110 k l+d+leAli+A+yld Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1608 VPKALGDVLEALIAAVYLD 1626 56789*************8 PP >> dsrm Double-stranded RNA binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.3 0.0 0.0043 7 49 67 .] 634 653 .. 575 653 .. 0.86 2 ! 47.2 0.1 1.4e-15 2.4e-12 1 67 [] 1653 1717 .. 1653 1717 .. 0.98 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0043 ES.SHHHHHHHHHHHHHHHH CS dsrm 49 gs.sKKeAeqlAAekALqkL 67 + + K A+ +AA kA+++L Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 634 PMdNVKTAKISAAFKACKVL 653 4449*************987 PP == domain 2 score: 47.2 bits; conditional E-value: 1.4e-15 HHHHHHHHHHHTTSCCEEEEEEEESSTSSSE.EEEE...E CS dsrm 1 pkskLqelcqkkgkppnyeyvseegpphslk.kFtv...t 36 p++++++l+++k+ +p++ ++++eg + + +Ft+ t Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1653 PINHIRQLVEHKHAKPVFSSPIVEGETVMVScQFTCmekT 1692 89****************************9*****9999 PP EEETTEEEEEEEESSHHHHHHHHHHHHHHHH CS dsrm 37 vkvngklygtGvgssKKeAeqlAAekALqkL 67 +kv +G+gs+K++A+ +AA++ALq+L Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1693 IKV------YGFGSNKDQAKLSAAKHALQQL 1717 999......********************98 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.5 0.0 4.7e-17 7.8e-14 8 138 .. 16 152 .. 9 179 .. 0.77 Alignments for each domain: == domain 1 score: 51.5 bits; conditional E-value: 4.7e-17 HHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx. RF DEAD 8 iplilgggdvlvaaeTGsGKTlaflipviqillet.kdq. 45 ++++ +++ +v +TGsGKT ++++ v++++ + + + Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 16 VDHLT-KSNGIVYLPTGSGKTFVAIL-VLKRFSQDfD-Kp 52 55444.588899***********987.6777877644.35 PP ......EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEET CS ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 ......kalivaPtreLaeqtlnnlkqfkkypklrvllii 79 +al+++ t eLa+q++ ++++++ +v ++ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 53 iesggkRALFMCNTVELARQQAMAVRRCTNF---KVGFYV 89 999999***********************87...999999 PP TTSEHHHHHHHHH....TT.-SEEEEEHHHHHHHHHTTSS CS xxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx RF DEAD 80 ggvalardqlsvl....dngvdivvgTpgrlddlvstgkl 115 g++ + d ++ + ++ +++vgT + ++d+v ++ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 90 GEQGVD-DWTRGMwsdeIKKNQVLVGTAQVFLDMVTQTYV 128 988766.44444446775668***************9988 PP HCTTEEEEEEETHHHHHST.TTHH CS xxxxxxxxxxxxxxxxxxx.xxxx RF DEAD 116 nlsqvrllVlDEadrllsq.gfsd 138 ls+++++++DE+++ f++ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 129 ALSSLSVVIIDECHHGTGHhPFRE 152 *************98666524444 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 44.9 0.0 4.4e-15 7.3e-12 20 74 .. 441 495 .. 433 498 .. 0.92 2 ? -4.3 0.0 9 1.5e+04 17 34 .. 908 925 .. 906 933 .. 0.83 Alignments for each domain: == domain 1 score: 44.9 bits; conditional E-value: 4.4e-15 HHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESS CS Helicase_C 20 nereeileqfnagkskvlvatnvaerGidlpdvnvVinfd 59 + ++ ++qf++g+ + +++++v+e+Gid++++n+V+++d Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 441 KWQKSAIQQFRDGNANLMICSSVLEEGIDVQACNHVFILD 480 567899********************************** PP SSSSHHHHHHHHTTS CS Helicase_C 60 lprsvtsyiQriGRt 74 + ++ y+Q GR+ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 481 PVKTFNMYVQSKGRA 495 **************5 PP == domain 2 score: -4.3 bits; conditional E-value: 9 STHHHHHHHHHHHHTTSS CS Helicase_C 17 lpqnereeileqfnagks 34 +++n+++++ +f+ +k+ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 908 MEKNQQDKTYYEFTMSKY 925 8999****9999999887 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.9 0.0 2.7e-14 4.5e-11 2 179 .. 6 172 .. 5 176 .. 0.73 Alignments for each domain: == domain 1 score: 42.9 bits; conditional E-value: 2.7e-14 -EE-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHH CS ResIII 2 lklrpyQeeaienllesiekedekkrglivmaTGtGKTlv 41 +k+r yQ + ++ l k +g++ ++TG+GKT+v Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 6 IKPRGYQLRLVDHLT--------KSNGIVYLPTGSGKTFV 37 566777777777776........679************** PP HHHHHHHH-S............-EEEEESSHHHHHHHHHH CS ResIII 42 aasliarlar............kflflvprkelleqalee 69 a+ l+++ ++ ++lf +++ el q + Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 38 AI-LVLKRFSqdfdkpiesggkRALFMCNTVELARQQAMA 76 **.555555559999***********************99 PP GGGGTGG...GEEEESSS-B---SEEEEEHHHHH...... CS ResIII 70 fkkfeskkiefekkniavakkdklfgeeqkkskdkeekkk 109 +++f+ ++ +++ + + +++e Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 77 V----RRCTNFKVGFY----VGEQGVDDWTRGMWSDE--I 106 9....55555544444....44334444444444334..4 PP ............................HTHHHHTTT-SE CS ResIII 110 kdkeiilttiqklhkaleeeeendeskseslealldefdv 149 k++++++ t+q + +++ l v Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 107 KKNQVLVGTAQVFLDMVTQ-----------TYVALSSLSV 135 6789999999999988764...........556677899* PP EEEETGGGTTSTT.THHHHH.......---SEEEEEE CS ResIII 150 iiiDEaHrlsakkkyreile.......fkkafllglT 179 +iiDE+H+ + + +re ++ k + ++glT Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 136 VIIDECHHGTGHHPFREFMRlftianqTKLPRVVGLT 172 **********999988887766654444444446665 PP >> PAZ PAZ domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.6 0.3 5.7e-12 9.5e-09 4 130 .. 849 998 .. 845 1000 .. 0.84 Alignments for each domain: == domain 1 score: 34.6 bits; conditional E-value: 5.7e-12 HHHHHHCCCSSSHCCTSHHHH......HHHHHTTEEEEET CS PAZ 4 leflerilkqetrrqkkfrkk......lakalkglivltt 37 + +++r++++ +++ +++ +++ g iv+ + Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 849 MTNFRRLPQSHGSNV---QQReqqpapRPEDFEGKIVTQW 885 333444444333333...33333477799*********** PP TSCGGEEEEEEEEECCETTTSEEEETTTEEEEHHHHHHHC CS PAZ 38 yrnnerkyriadiseeptpestfpdkegkeitvaeYfkkk 77 y n ++ ++++++e tp s +++ ++ t++e+ k Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 886 YANYDKPMLVTKVHRELTPLSYMEKN-QQDKTYYEFTMSK 924 **************************.************* PP CT---S...STTSEEEEEECSSSS................ CS PAZ 78 Ynielk...ypnqplldvkktsrr................ 98 Y+ ++ +++ ++ v+ + + Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 925 YGNRIGdvvHKDKFMIEVRDLTEQltfyvhnrgkfnaksk 964 **99861215799*******9999**************** PP ..SEEEE-CCCEEEETTT---S--XXXXXXXXXX CS PAZ 99 ..qeqylppElcdivplqrslkkdfaaqksilyr 130 +++l+pElc+ +++ l+ + ++sil r Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 965 akMKVILIPELCFNFNFPGDLWLKLIFLPSILNR 998 **********************999999998765 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 5.7e-05 0.095 4 120 .. 21 168 .. 17 173 .. 0.74 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 5.7e-05 AAA_22 4 agilvvtGesGvGKTtlarrlaeqldevaeaae...karv 40 ++ ++v+ ++G+GKT++a +++++ + + +r+ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 21 KSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIesgGKRA 60 66789999*************9999876665558995555 PP AAA_22 41 vfveapsst.spkellkkllralglpakg........... 68 +f+ + + +++++ + + +++++ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 61 LFMCNTVELaRQQAMAVRRCTNFKVGFYVgeqgvddwtrg 100 5444444443777778888888887776687788888888 PP AAA_22 69 ...........rltteell.eallralrrrrv.glliiDE 95 +t++++ ++++++ + + ++iiDE Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 101 mwsdeikknqvLVGTAQVFlDMVTQTYVALSSlSVVIIDE 140 888887777774444444447777777777779******* PP AAA_22 96 aqhLr...seelleelrdlldetgvklv 120 +h + + + + l +++++t+++ v Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 141 CHHGTghhPFREFMRLFTIANQTKLPRV 168 ***6556548888888899999998865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1722 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 376 (0.0253523); expected 296.6 (0.02) Passed bias filter: 204 (0.013755); expected 296.6 (0.02) Passed Vit filter: 32 (0.00215764); expected 14.8 (0.001) Passed Fwd filter: 9 (0.000606837); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:01.11 # Mc/sec: 4049.54 // Query: Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 [L=1886] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-56 187.8 0.0 8e-27 93.9 0.0 3.0 2 Ribonuclease_3 Ribonuclease III domain 2.3e-32 111.1 0.0 4.1e-32 110.3 0.0 1.5 1 PAZ PAZ domain 8.4e-29 100.1 0.8 1.9e-14 53.7 0.0 4.4 3 Ribonucleas_3_3 Ribonuclease-III-like 5.4e-26 90.1 1.4 7.6e-25 86.5 0.0 3.1 3 Dicer_dimer Dicer dimerisation domain 4.8e-22 78.2 0.2 1.7e-08 34.9 0.0 3.8 3 dsrm Double-stranded RNA binding motif 8.7e-17 61.1 0.1 8.2e-14 51.6 0.0 3.6 3 DND1_DSRM double strand RNA binding domain from DEAD E 2.2e-14 53.0 0.0 4.8e-14 51.9 0.0 1.6 1 Helicase_C Helicase conserved C-terminal domain 3.5e-12 46.5 0.1 9.5e-12 45.1 0.1 1.7 1 ResIII Type III restriction enzyme, res subunit 2.3e-11 43.4 0.2 2.3e-10 40.2 0.0 2.3 2 DEAD DEAD/DEAH box helicase 0.0014 17.5 0.3 0.0032 16.3 0.2 1.5 1 SNF2_N SNF2 family N-terminal domain Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 90.8 0.0 5.1e-29 7.6e-26 1 114 [] 1352 1495 .. 1352 1495 .. 0.84 2 ! 93.9 0.0 5.4e-30 8e-27 1 114 [] 1571 1684 .. 1571 1684 .. 0.90 Alignments for each domain: == domain 1 score: 90.8 bits; conditional E-value: 5.1e-29 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTC CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklgl 53 er e LGDa+lk+++++ lf +yp+ heg+l+++r+++vsn +l+++a +gl Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1352 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGL 1404 799************************************************** PP HCHHBHHHHHHSTT--T.....SSSSS.SC....................... CS Ribonuclease_3 54 psylresefdppknwlp.....lnkdlangk...................... 79 +sy++++ f p+++ p + +d + g Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1405 QSYIQADRFAPSRWSAPgvppvFDEDTKDGGssffdeeqkpvseensdvfedg 1457 *********************95555555556666666666666667777777 PP .................TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 80 ..grqsisydlk.eqsiadkvladvvEAliGaiyldsg 114 ++ + + dl+ + + k+ladvvEAliG++y+++g Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1458 emEDGELEGDLSsYRVLSSKTLADVVEALIGVYYVEGG 1495 773344445555677778*****************986 PP == domain 2 score: 93.9 bits; conditional E-value: 5.4e-30 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTC CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklgl 53 +rLef+GDavl+++it++lf ty++l++g+l++lr++ v+nen ar+a k++l Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1571 QRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKL 1623 7**************************************************** PP HCHHBHHHHHHSTT--TSSSSS.SC..................TSHHHHHHHH CS Ribonuclease_3 54 psylresefdppknwlplnkdlangkgrqsisydlk...eqsiadkvladvvE 103 + ylr+ ++ + k+++++ k+ +++ +s+ ++ + a+kvl+d+vE Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1624 HLYLRHGSSALEKQIREFVKEVQTE---SSKPGFNSfglGDCKAPKVLGDIVE 1673 *****************65555554...444455555678899********** PP HHHHHHHHHTT CS Ribonuclease_3 104 AliGaiyldsg 114 +++Gai+ldsg Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1674 SIAGAIFLDSG 1684 *********97 PP >> PAZ PAZ domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 110.3 0.0 2.8e-35 4.1e-32 2 134 .. 1158 1317 .. 1157 1318 .. 0.97 Alignments for each domain: == domain 1 score: 110.3 bits; conditional E-value: 2.8e-35 EHHHHHHHCCCSSSHCCTSHHHH...HHHHHTTEEEEETTSCGGEEEEEEEEE CS PAZ 2 evleflerilkqetrrqkkfrkk...lakalkglivlttyrnnerkyriadis 51 +v + +e+ +++ +++k ++++ +a++l+g iv++++++ +++++++i+ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1158 PVRDAFEKEVEEDLSKGKLMMADgcmVAEDLIGKIVTAAHSG--KRFYVDSIC 1208 67888999999999999999999*******************..********* PP CCETTTSEEEET.....TTEEEEHHHHHHHCCT---SSTTSEEEEEECSSSS. CS PAZ 52 eeptpestfpdk.....egkeitvaeYfkkkYnielkypnqplldvkktsrr. 98 +++++e++fp+k + ++ t+a+Y+k+kY+++l++++qpl++ ++ s++ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1209 YDMSAETSFPRKegylgPLEYNTYADYYKQKYGVDLNCKQQPLIKGRGVSYCk 1261 ***************************************************** PP ....................SEEEE-CCCEEEETTT---S--XXXXXXXXXXX CS PAZ 99 ....................qeqylppElcdivplqrslkkdfaaqksilyrt 131 ++++lppElc ++pl+ sl++ +++++si+ r+ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1262 nllsprfeqsgesetvldktYYVFLPPELCVVHPLSGSLIRGAQRLPSIMRRV 1314 ****************************************************9 PP XXX CS PAZ 132 ral 134 +++ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1315 ESM 1317 986 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.5 0.0 9.4e-11 1.4e-07 7 80 .. 1338 1410 .. 1333 1419 .. 0.85 2 ! 7.7 0.0 0.0021 3.1 93 120 .. 1476 1503 .. 1463 1507 .. 0.83 3 ! 53.7 0.0 1.3e-17 1.9e-14 2 116 .. 1550 1688 .. 1549 1697 .. 0.80 Alignments for each domain: == domain 1 score: 31.5 bits; conditional E-value: 9.4e-11 Ribonucleas_3_3 7 qaltHkSyangrkgyNerLefLGdavLelvvseyl.lekakkdegeltkklas 58 +alt S + ++ ++er e LGda L+ vvs++l l++++k eg+lt+++++ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1338 EALTAASCQ--ETFCYERAELLGDAYLKWVVSRFLfLKYPQKHEGQLTRMRQQ 1388 566666665..4579*******************934557778********** PP Ribonucleas_3_3 59 lvseeslaeiakelgLgkvlrl 80 +vs+ l ++a gL+++++ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1389 MVSNMVLYQFALVKGLQSYIQA 1410 *******************986 PP == domain 2 score: 7.7 bits; conditional E-value: 0.0021 Ribonucleas_3_3 93 ekvladaleAliGAiyldkGaeeakefv 120 +k lad++eAliG y+++G+ +a++++ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1476 SKTLADVVEALIGVYYVEGGKIAANHLM 1503 4689**************9988877655 PP == domain 3 score: 53.7 bits; conditional E-value: 1.3e-17 Ribonucleas_3_3 2 eelllqaltHkSyangrkgyNerLefLGdavLelvvseyl.lekakkdegelt 53 + ll +a+tH S + ++++rLef+GdavL+ +++++l + +++ + g+lt Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1550 KGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLfFTYTSLPPGRLT 1602 67999********99999***************77666652788999****** PP Ribonucleas_3_3 54 kklaslvseeslaeiakelgLgkvlrl.....................rkgee 85 +a+ v++e+ a++a +++L +lr + g + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1603 DLRAAAVNNENFARVAVKHKLHLYLRHgssalekqirefvkevqtessKPGFN 1655 ********************888888888888888877876555444322222 PP Ribonucleas_3_3 86 e..tessgrekvladaleAliGAiyldkGaeea 116 + ++ + kvl+d++e++ GAi+ld+G++++ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1656 SfgLGDCKAPKVLGDIVESIAGAIFLDSGKDTT 1688 21123334466******************9876 PP >> Dicer_dimer Dicer dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.5 0.0 5.1e-28 7.6e-25 1 86 [. 840 930 .. 840 935 .. 0.96 2 ? -4.2 0.3 10 1.5e+04 54 72 .. 1754 1772 .. 1750 1777 .. 0.80 3 ? 1.0 0.0 0.23 3.5e+02 49 71 .. 1859 1881 .. 1853 1884 .. 0.83 Alignments for each domain: == domain 1 score: 86.5 bits; conditional E-value: 5.1e-28 HHHHHHHHHTTSSS-TT--SS-EEEEEE--G.....-EEEEEE--TT-SS--EEE CS Dicer_dimer 1 aiallarYCakLpsdaftklkpefevekeee.....glvctveLPlnsplreieg 50 a+ l++ YC++Lp d++ l+pef++ek e+ +++c+++LP+n+p++ +eg Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 840 AVGLVHFYCSQLPGDRYAILRPEFSMEKHEKpgghtEYSCRLQLPCNAPFEILEG 894 789***************************999********************** PP E--SSHHHHHHHHHHHHHHHHHHH-S-TTTS--HHH CS Dicer_dimer 51 kpmkskklakqsaAfkackkLyelgeLndhLlPvkk 86 ++++s++la+q++++ ackkL+e+g+++d+LlP k Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 895 PVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKG 930 *********************************975 PP == domain 2 score: -4.2 bits; conditional E-value: 10 SSHHHHHHHHHHHHHHHHH CS Dicer_dimer 54 kskklakqsaAfkackkLy 72 ++kk+a++ aA +a +L Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1754 PQKKMAQKLAARNALAALK 1772 5789999999999998884 PP == domain 3 score: 1.0 bits; conditional E-value: 0.23 EEE--SSHHHHHHHHHHHHHHHH CS Dicer_dimer 49 egkpmkskklakqsaAfkackkL 71 g+pm+s+k ak saA + L Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1859 IGEPMPSVKKAKDSAAVLLLELL 1881 689*************8777666 PP >> dsrm Double-stranded RNA binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.2 0.0 0.0011 1.7 14 67 .] 859 915 .. 843 915 .. 0.79 2 ! 29.5 0.2 5.3e-10 7.9e-07 1 67 [] 1711 1771 .. 1711 1771 .. 0.90 3 ! 34.9 0.0 1.1e-11 1.7e-08 3 67 .] 1811 1881 .. 1809 1881 .. 0.79 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.0011 SCCEEEEEEEESSTSSSEEEEEEEEETTEEEE...EEEE.SSHHHHHHHHHHHHH CS dsrm 14 kppnyeyvseegpphslkkFtvtvkvngklyg...tGvg.ssKKeAeqlAAekAL 64 +p++ ++e+p ++ +++++ + + ++ + +G + ss ++A+q+ + +A+ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 859 LRPEFSMEKHEKPGGH-TEYSCRLQLPCNAPFeilEGPVcSSMRLAQQAVCLAAC 912 679999999****999.9********444443444554426************** PP HHH CS dsrm 65 qkL 67 +kL Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 913 KKL 915 *98 PP == domain 2 score: 29.5 bits; conditional E-value: 5.3e-10 HHHHHHHHHHHTTSCCEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEESSHH CS dsrm 1 pkskLqelcqkkgkppnyeyvseegpphslkkFtvtvkvngklygtGvgssKK 53 p++ Lqe cq++ +++y+ +++ + tv+v ++g ++g + + KK Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1711 PVRELQERCQQQAEGLEYK----ASRSGN--TATVEVFIDGVQVGVAQNPQKK 1757 789*************995....555555..899******************* PP HHHHHHHHHHHHHH CS dsrm 54 eAeqlAAekALqkL 67 A++lAA++AL+ L Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1758 MAQKLAARNALAAL 1771 ***********876 PP == domain 3 score: 34.9 bits; conditional E-value: 1.1e-11 HHHHH.HHHHTTSCCEEEEEEEESSTSSSE.EEEEEEEETTEEEE...EEEES CS dsrm 3 skLqe.lcqkkgkppnyeyvseegpphslk.kFtvtvkvngklyg...tGvgs 50 + L+ + k++++p+y++v+e+gp+h+++ +F v v+ ++ ++ +G+ + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1811 QTLNDiCLRKNWPMPSYRCVKEGGPAHAKRfTFGVRVNTSDRGWTdecIGEPM 1863 689**666777799999999999999995555555555555555598899998 PP .SHHHHHHHHHHHHHHHH CS dsrm 51 .sKKeAeqlAAekALqkL 67 s K+A+ +AA++ L+ L Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1864 pSVKKAKDSAAVLLLELL 1881 8*************9976 PP >> DND1_DSRM double strand RNA binding domain from DEAD END PROTEIN 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.5 0.0 0.23 3.5e+02 18 65 .. 860 901 .. 853 919 .. 0.71 2 ? 3.3 0.1 0.067 1e+02 55 80 .] 1746 1772 .. 1711 1772 .. 0.78 3 ! 51.6 0.0 5.5e-17 8.2e-14 3 79 .. 1809 1881 .. 1808 1882 .. 0.95 Alignments for each domain: == domain 1 score: 1.5 bits; conditional E-value: 0.23 DND1_DSRM 18 sPvYelhseagpdgrllFlYkVvipglatqleglvqiftpsklsstke 65 +P+++++++ p g + ++ +p a ++i++ ++s++ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 860 RPEFSMEKHEKPGGHTEYSCRLQLPCNAP-----FEILE-GPVCSSMR 901 7********************99997665.....45555.33344444 PP == domain 2 score: 3.3 bits; conditional E-value: 0.067 DND1_DSRM 55 ft.psklsstkeeAkeaaAeqvLqaLg 80 ++ + +++k+ A+++aA+++L+aL+ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1746 VQvGVAQNPQKKMAQKLAARNALAALK 1772 4446677899**************995 PP == domain 3 score: 51.6 bits; conditional E-value: 5.5e-17 DND1_DSRM 3 avslLeelCqknkwgsPvYelhseagpdgrllFlYkVvipglatqleglvqif 55 ++++L+++C +++w++P Y++ +e gp++ ++F++ V +++ ++ g+++ + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1809 TRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDR---GWTDEC 1858 689*****************************************...999999 PP DND1_DSRM 56 tpsklsstkeeAkeaaAeqvLqaL 79 + ++++++Ak++aA +L+ L Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1859 I-GEPMPSVKKAKDSAAVLLLELL 1881 8.799***************9987 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.9 0.0 3.3e-17 4.8e-14 9 74 .. 694 764 .. 686 768 .. 0.89 Alignments for each domain: == domain 1 score: 51.9 bits; conditional E-value: 3.3e-17 -EEEEST.....TSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEES CS Helicase_C 9 kvailhg.....elpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinf 58 ++a + g e+++++ ++++++f++g lvat+vae+G+d+ ++nvV+ f Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 694 RCASMIGhnnsqEMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRF 748 5555555666679****************************************** PP SSSSSHHHHHHHHTTS CS Helicase_C 59 dlprsvtsyiQriGRt 74 dl ++v yiQ +GR+ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 749 DLAKTVLAYIQSRGRA 764 ***************7 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.1 0.1 6.4e-15 9.5e-12 12 182 .. 250 415 .. 238 417 .. 0.76 Alignments for each domain: == domain 1 score: 45.1 bits; conditional E-value: 6.4e-15 HHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S.........-EEEEE CS ResIII 12 ienllesiekedekkrglivmaTGtGKTlvaasliarlar.........kflflv 57 + l+ +e++ + k+ + ++TG+GKTl+a+ li+ +++ +flv Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 250 RRYQLDVLEQA-KAKNTIAFLETGAGKTLIAILLIKSVHKdlmsqnrkmLSVFLV 303 44444445555.78899999************99999999999999978789*** PP SSHHHHHHHHHHGGGGTGG...GEEEESSS-B---SEEEEEHHHHH......... CS ResIII 58 prkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdk 112 p+ l+ q e + +++++++ + ++++ +d f +++ +++ ++k Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 304 PKVPLVYQQAEVI--RNQTCFQV-GHYCGEMGQD--FW-----DSRRWQREFESK 348 ***********99..22222222.3333333322..22.....222234456789 PP .........................HTHHHHTTT-SEEEEETGGGTTSTT.THHH CS ResIII 113 eiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkkyrei 167 +++++t+q l + l+ + + ++ d++i DE+H++ +k+ y + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 349 QVLVMTAQILLNILRH-----------SIIRMETIDLLILDECHHAVKKHPYSLV 392 *************874...........445677899***************9999 PP HH........---SEEEEEESS- CS ResIII 168 le........fkkafllglTATp 182 + k + ++g+TA p Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 393 MSefyhttpkDKRPAIFGMTASP 415 9999999999888999*****88 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.2 0.0 1.5e-13 2.3e-10 4 162 .. 253 415 .. 250 420 .. 0.76 2 ? 0.0 0.0 0.34 5e+02 25 83 .. 1683 1747 .. 1665 1763 .. 0.74 Alignments for each domain: == domain 1 score: 40.2 bits; conditional E-value: 1.5e-13 HHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT....EEEEEESS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx....xxxxxxxx RF DEAD 4 QaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq....kalivaPt 53 Q +++++ +++++ eTG+GKTl++++ i+ + + +q ++++P Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 253 QLDVLEQAK-AKNTIAFLETGAGKTLIAILL-IKSVHKDlMSQnrkmLSVFLVPK 305 556666555.59999************9984.444544444445556999***** PP HHHHHHHHHHHHHHTTTSSCCEEEETTTSE.....HHHHHHHHHTT.-SEEEEEH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxx RF DEAD 54 reLaeqtlnnlkqfkkypklrvlliiggva.....lardqlsvldngvdivvgTp 103 L+ q+++ +++ + +v + g++ +r q+++ +++v+T Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 306 VPLVYQQAEVIRNQTCF---QVGHYCGEMGqdfwdSRRWQREFE--SKQVLVMTA 355 ***********999887...777776655522232233333333..479****** PP HHHHHHHHTTSSHCTTEEEEEEETHHHHHST.TTHHHHHHHHHHSHHCTTSEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF DEAD 104 grlddlvstgklnlsqvrllVlDEadrllsq.gfsdqlnqilqilcdgkrlqviv 157 + l++++++ ++++ + ll+lDE+++ ++ +s + + + + kr + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 356 QILLNILRHSIIRMETIDLLILDECHHAVKKhPYSLVMSEFYHTTPKDKRPAIFG 410 ********96669999**********99997678889999999998888888999 PP EESS- CS xxxxx RF DEAD 158 lSATl 162 ++A + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 411 MTASP 415 99976 PP == domain 2 score: 0.0 bits; conditional E-value: 0.34 SSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHHHHHHHTTT.....S CS xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x RF DEAD 25 sGKTlaflipviqillet.kdqkalivaPtreLaeqtlnnlkqfkky.....p 71 sGK + ++ +v+q ll+ + ++l + P reL e + ++++ + + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1683 SGKDTTAAWKVFQPLLQPmVTPETLPMHPVRELQERCQQQAEGLEYKasrsgN 1735 89988999999999988877789**********99888887655443344554 PP SCCEEEETTTSE CS xxxxxxxxxxxx RF DEAD 72 klrvlliiggva 83 v + i gv+ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1736 TATVEVFIDGVQ 1747 455555566555 PP >> SNF2_N SNF2 family N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.2 2.1e-06 0.0032 21 146 .. 258 383 .. 242 407 .. 0.71 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 2.1e-06 ..TTT-EEEE---TTSSCCHHHHHHHHHHCCCH.S-.....EEEE--T.TTHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxx RF SNF2_N 21 aeqsvrggiLaDemGlGKTvqvialilllkeea.erkkkkstLivvPs.slldqW 73 ++ ++++ i + e+G GKT+ +i li+ +++ ++++k + +vP+ l+ q Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 258 EQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLmSQNRKMLSVFLVPKvPLVYQQ 312 567788899999***************5544320222222355667775666666 PP HHHHHHCS.T.T--EEE--HCC....CHHHTT-SSSTT-SEEEE-CCHHH..TST CS xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SNF2_N 74 vneierhvspsalrvlvyggqk....kakksaaklladydvvittydvlralrek 124 + i++ + +v +y g+ ++ ++ +++++v++ t ++l + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 313 AEVIRNQT-C--FQVGHYCGEMgqdfWDSRRWQREFESKQVLVMTAQILL---NI 361 66666665.3..3455554444333433455688999*************...77 PP CTCHHHHTSEEEEEEETTCCGG CS xxxxxxxxxxxxxxxxxxxxxx RF SNF2_N 125 krksvlkkvkwkrvvlDEahrl 146 r s + ++ ++lDE+h+ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 362 LRHSIIRMETIDLLILDECHHA 383 7777777778*********985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1886 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 572 (0.0385679); expected 296.6 (0.02) Passed bias filter: 232 (0.0156429); expected 296.6 (0.02) Passed Vit filter: 24 (0.00161823); expected 14.8 (0.001) Passed Fwd filter: 10 (0.000674263); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 0.68u 0.35s 00:00:01.03 Elapsed: 00:00:01.30 # Mc/sec: 3786.99 //