# hmmscan :: search sequence(s) against a profile database # HMMER 3.0 (March 2010); http://hmmer.org/ # Copyright (C) 2010 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: Chrysophyte.Dicer.fa # target HMM database: /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm # output directed to file: Chrysophyte.Dicer.PFam-27-A # number of worker threads: 16 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Spumella-elongata-CCAP-955-1_CAMPEP_0185013184 [L=295] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-32 109.4 0.4 2.5e-25 88.1 0.0 2.6 2 Helicase_C Helicase conserved C-terminal domain 2.2e-06 27.2 0.1 5.4e-06 25.9 0.1 1.7 1 DEAD DEAD/DEAH box helicase 0.0017 16.8 3.7 0.0047 15.3 2.6 1.8 1 DUF1253 Protein of unknown function (DUF1253) Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 0.0 1.8e-07 0.0009 2 40 .. 115 153 .. 114 157 .. 0.94 2 ! 88.1 0.0 5.1e-29 2.5e-25 2 78 .] 175 251 .. 174 251 .. 0.97 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 1.8e-07 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvat 40 ll +++++++++h++l+q+er e + f++ +++++v+t Spumella-elongata-CCAP-955-1_CAMPEP_0185013184 115 LLIECNFPSIAIHSGLKQEERIERYKAFKEFQKRIMVST 153 688999********************************9 PP == domain 2 score: 88.1 bits; conditional E-value: 5.1e-29 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsv 64 ll +++++++++h++l+q+er e +qf++ +++++v+t+ ++rGid++ vn Vin+d+p++ Spumella-elongata-CCAP-955-1_CAMPEP_0185013184 175 LLVECNFPSIAIHSGLSQEERIERYKQFKEFQKRIMVSTDLFGRGIDIERVNIVINYDMPDDS 237 678899********************************************************* PP HHHHHHHTTSSTTT CS Helicase_C 65 tsyiQriGRtgRag 78 +sy++r+GR+gR+g Spumella-elongata-CCAP-955-1_CAMPEP_0185013184 238 DSYLHRVGRAGRFG 251 ************97 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.9 0.1 1.1e-09 5.4e-06 123 165 .. 2 43 .. 1 47 [. 0.88 Alignments for each domain: == domain 1 score: 25.9 bits; conditional E-value: 1.1e-09 EEEETHHHHHST.TTHHHHHHHHHHSHHCTTSEEEEEESS-THH CS xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 123 lVlDEadrllsq.gfsdqlnqilqilcdgkrlqvivlSATlpkd 165 +VlDE+d+ l++ +++++++qi + +k+ qv+++SAT++++ Spumella-elongata-CCAP-955-1_CAMPEP_0185013184 2 FVLDECDKCLDKlDMRKDIQQIFIET--PKKKQVMMFSATMTTE 43 69*********989999999999888..888**********954 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 2.6 9.6e-07 0.0047 281 387 .. 140 241 .. 9 247 .. 0.88 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 9.6e-07 DUF1253 281 arlkfFtknvlpkltkeskekgvlifipsYfdyvrirnylkkekisFaaiseytsekkisrar 343 + +k F+k+++ + + ++v+if+ s v ++++l + ++ ai+ s+++ + Spumella-elongata-CCAP-955-1_CAMPEP_0185013184 140 KAFKEFQKRIMVSTX---EFNQVVIFVKSVQRAVALDKLLVECNFPSIAIHSGLSQEERIERY 199 468889999998888...9*************************9999999999999999999 PP DUF1253 344 klFkkgrkkiLLvteRlhfyrRykikgvkkvifyslPefpefYs 387 k+Fk+ +k+i++ t+ +f r + i v+ vi y +P+ ++ Y Spumella-elongata-CCAP-955-1_CAMPEP_0185013184 200 KQFKEFQKRIMVSTD--LFGRGIDIERVNIVINYDMPDDSDSYL 241 9*************8..78899***************9988775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (295 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 657 (0.0442991); expected 296.6 (0.02) Passed bias filter: 417 (0.0281168); expected 296.6 (0.02) Passed Vit filter: 33 (0.00222507); expected 14.8 (0.001) Passed Fwd filter: 3 (0.000202279); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.20u 0.32s 00:00:00.52 Elapsed: 00:00:00.49 # Mc/sec: 1571.53 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0185011214 [L=152] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-26 90.9 0.1 4.9e-26 90.3 0.1 1.3 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.064 12.6 0.2 0.073 12.4 0.2 1.2 1 zf-SNAP50_C snRNA-activating protein of 50kDa MW C terminal Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 90.3 0.1 6.6e-30 4.9e-26 3 78 .] 36 111 .. 34 111 .. 0.97 Alignments for each domain: == domain 1 score: 90.3 bits; conditional E-value: 6.6e-30 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHH CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvt 65 ++ g++++++h+++ q+ r++++++f++g +++lv+++ + rGid+++vnvVinfd+p++ + Spumella-elongata-CCAP-955-1_CAMPEP_0185011214 36 ITELGYSCFFIHSRMYQSHRNRVFHDFRNGACRCLVSSDLFTRGIDIESVNVVINFDFPKNSE 98 6789*********************************************************** PP HHHHHHTTSSTTT CS Helicase_C 66 syiQriGRtgRag 78 +y++riGR gR+g Spumella-elongata-CCAP-955-1_CAMPEP_0185011214 99 TYLHRIGRSGRFG 111 ***********97 PP >> zf-SNAP50_C snRNA-activating protein of 50kDa MW C terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.2 9.9e-06 0.073 17 60 .. 19 64 .. 3 101 .. 0.84 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 9.9e-06 zf-SNAP50_C 17 daisCvsdlqvlelakkkak..ssfffiegtfYnDlrdedavdyse 60 i+C s ++v+ lakk ++ s+ffi+ +Y+ +r+ ++d+ + Spumella-elongata-CCAP-955-1_CAMPEP_0185011214 19 AIIFCNSVTRVELLAKKITElgYSCFFIHSRMYQSHRNRVFHDFRN 64 5689999999988777655422689*************99999865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (152 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 307 (0.0206999); expected 296.6 (0.02) Passed bias filter: 286 (0.0192839); expected 296.6 (0.02) Passed Vit filter: 20 (0.00134853); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.14u 0.19s 00:00:00.33 Elapsed: 00:00:00.36 # Mc/sec: 1102.14 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0184980914 [L=226] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-25 88.6 0.3 5.9e-25 86.9 0.0 2.0 2 Helicase_C Helicase conserved C-terminal domain 0.0057 15.8 0.0 1.9 7.5 0.0 2.2 2 tRNA-synt_1b tRNA synthetases class I (W and Y) ------ inclusion threshold ------ 0.017 14.6 0.1 0.035 13.5 0.1 1.6 1 DEAD DEAD/DEAH box helicase 0.092 12.7 0.2 0.34 10.9 0.1 2.0 2 RyR RyR domain Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.0 0.89 3.3e+03 11 28 .. 24 41 .. 8 49 .. 0.54 2 ! 86.9 0.0 1.6e-28 5.9e-25 2 78 .] 106 182 .. 105 182 .. 0.97 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 0.89 EEESTTSTHHHHHHHHHH CS Helicase_C 11 ailhgelpqnereeileq 28 +++ + +++ e ++ ++ Spumella-elongata-CCAP-955-1_CAMPEP_0184980914 24 VMMFSATMTAESRALCKK 41 223333444444455555 PP == domain 2 score: 86.9 bits; conditional E-value: 1.6e-28 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsv 64 ll +++++++++h++l+q+er + +qf++ +++++v+t+ ++rGid++ vn Vin+d+p + Spumella-elongata-CCAP-955-1_CAMPEP_0184980914 106 LLVECNFPSIAIHSGLNQEERIARYKQFKEFQKRIMVSTDLFGRGIDIERVNIVINYDMPADS 168 678899********************************************************* PP HHHHHHHTTSSTTT CS Helicase_C 65 tsyiQriGRtgRag 78 +sy++r+GR+gR+g Spumella-elongata-CCAP-955-1_CAMPEP_0184980914 169 DSYLHRVGRAGRFG 182 ************97 PP >> tRNA-synt_1b tRNA synthetases class I (W and Y) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.2 0.1 0.0013 4.7 216 268 .. 34 84 .. 27 102 .. 0.89 2 ! 7.5 0.0 0.00051 1.9 63 119 .. 135 192 .. 115 214 .. 0.74 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0013 HHHHHHHHSHCSTTCSHHHHHHHHHCHHHCHHHHHHHHHTSEEESSHHHHHHH CS tRNA-synt_1b 216 svkkkiqkaitdsdeevrkllklktelsnelieileallgkkpkreaeellae 268 + + +++k+++d+ e +r +++ k l+ l++++ +l++k+++r++++ll + Spumella-elongata-CCAP-955-1_CAMPEP_0184980914 34 ESRALCKKFMQDPHE-IRVDEESKLTLHG-LLQYYVKLTEKEKNRKLNDLLDA 84 667899*******99.*************.************99999999876 PP == domain 2 score: 7.5 bits; conditional E-value: 0.00051 HHHHHHHHHHHHHHHTCHTTTEEEEECHHHHTCH.HHHHHHHHHCTCHCHHHHHHHHH CS tRNA-synt_1b 63 kreeelenakaqlakgldpekaeivlqsewlehl.elaellrdlgklgslnrmlqfks 119 + +++ + + + +g+d+e+++iv+++++++ + +++ + + g++g+ +l+f s Spumella-elongata-CCAP-955-1_CAMPEP_0184980914 135 EFQKRIMVSTDLFGRGIDIERVNIVINYDMPADSdSYLHRVGRAGRFGTKGLALTFVS 192 44444444467899*****************998568888888888888877777777 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.1 9.6e-06 0.035 135 164 .. 6 33 .. 1 38 [. 0.78 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 9.6e-06 TTHHHHHHHHHHSHHCTTSEEEEEESS-TH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 135 gfsdqlnqilqilcdgkrlqvivlSATlpk 164 +++++++qi + + +k+ qv+++SAT++ Spumella-elongata-CCAP-955-1_CAMPEP_0184980914 6 DMRKDIQQIFMET--PKKKQVMMFSATMTA 33 5677888998887..888**********94 PP >> RyR RyR domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.1 9.1e-05 0.34 48 84 .. 53 89 .. 16 100 .. 0.83 2 ? -1.3 0.0 0.61 2.3e+03 52 70 .. 121 139 .. 111 144 .. 0.69 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 9.1e-05 -BTTTTEETT-S-GGGS-HHHHHHHHHHHHHHHHHHH CS RyR 48 esekkkthplLvpYdtLtekekerdrekaqellktll 84 e++k h lL+ Y +Ltekek+r+ + + ++l + + Spumella-elongata-CCAP-955-1_CAMPEP_0184980914 53 EESKLTLHGLLQYYVKLTEKEKNRKLNDLLDALEFNQ 89 455667899***************9998888887655 PP == domain 2 score: -1.3 bits; conditional E-value: 0.61 TTEETT-S-GGGS-HHHHH CS RyR 52 kkthplLvpYdtLtekeke 70 +++ ++ Y++++e +k+ Spumella-elongata-CCAP-955-1_CAMPEP_0184980914 121 LNQEERIARYKQFKEFQKR 139 4556677778888877776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (226 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 687 (0.0463219); expected 296.6 (0.02) Passed bias filter: 466 (0.0314207); expected 296.6 (0.02) Passed Vit filter: 40 (0.00269705); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.18u 0.28s 00:00:00.46 Elapsed: 00:00:00.35 # Mc/sec: 1685.53 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 [L=701] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-42 143.8 0.1 3.9e-41 140.3 0.0 2.3 2 DEAD DEAD/DEAH box helicase 1.4e-29 101.7 0.1 3.7e-29 100.4 0.1 1.8 1 Helicase_C Helicase conserved C-terminal domain 0.0099 14.9 0.0 0.0099 14.9 0.0 3.3 3 CMS1 U3-containing 90S pre-ribosomal complex subunit ------ inclusion threshold ------ 0.011 15.7 0.0 0.03 14.2 0.0 1.7 1 Helicase_C_2 Helicase C-terminal domain 0.047 13.5 1.3 1.2 9.0 0.4 3.1 3 DNA_pol3_chi DNA polymerase III chi subunit, HolC Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 140.3 0.0 1.3e-44 3.9e-41 2 168 .. 290 489 .. 289 490 .. 0.89 2 ? 0.8 0.0 0.095 2.8e+02 70 102 .. 562 597 .. 508 604 .. 0.73 Alignments for each domain: == domain 1 score: 140.3 bits; conditional E-value: 1.3e-44 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT.........EEEEEESSH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.........xxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq.........kalivaPtr 54 piQ++a+p l+g+d+++ aeTGsGKT afl+p++ ll+ k+ a+i+aPtr Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 290 PIQRQAVPIGLSGRDIIGIAETGSGKTCAFLLPLVCYLLRLpKEYidrvqaqgpLAVIMAPTR 352 8*************************************9986666****************** PP HHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHC CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 55 eLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnl 117 eLa+q+ +++ +++k +++r++ ++gg++++ dq l+ngv+iv+gTpgr++d ++++ l l Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 353 ELAQQIEEECIKLLKFTNFRTVSVVGGQSIQ-DQGFTLRNGVEIVIGTPGRMLDCIENNYLVL 414 *****************************99.**************************999** PP TTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCT......T..................SEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......x..................xxxx RF DEAD 118 sqvrllVlDEadrllsqgfsdqlnqilqilcdgk......r..................lqvi 156 q++++VlDEadr+ ++gf++q+ +l+++ + + + + Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 415 NQCNYVVLDEADRMIDMGFEPQVVAVLEAMGGLLkdedeeQaelqlkqnegaetakqifRVTA 477 *********************8877776653333333355155556666777788889677** PP EEESS-THHHHH CS xxxxxxxxxxxx RF DEAD 157 vlSATlpkdvkk 168 ++SAT+p v++ Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 478 MFSATMPPAVEQ 489 *******88876 PP == domain 2 score: 0.8 bits; conditional E-value: 0.095 TSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 70 ypklrvlliiggvalardqlsvl....dngvdivvgT 102 ++ +++gg +++ ++++ l +++v+++v+T Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 562 TLGYHSGILHGGRSQD-QREETLdqfrSGEVQVLVAT 597 3444678899999955.4455556889999*****99 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 100.4 0.1 1.2e-32 3.7e-29 3 78 .] 560 635 .. 558 635 .. 0.97 Alignments for each domain: == domain 1 score: 100.4 bits; conditional E-value: 1.2e-32 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHH CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvt 65 l g+++ ilhg+ +q++ree+l+qf++g+ +vlvat+va+rG+d+pdv++Vinfd+p + Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 560 LDTLGYHSGILHGGRSQDQREETLDQFRSGEVQVLVATDVAARGLDIPDVSHVINFDCPNKIQ 622 67889********************************************************** PP HHHHHHTTSSTTT CS Helicase_C 66 syiQriGRtgRag 78 sy +riGRtgRag Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 623 SYCHRIGRTGRAG 635 ***********97 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -4.7 5.3 3.2 9.6e+03 7 34 .. 59 85 .. 51 114 .. 0.52 2 ? 0.1 1.2 0.11 3.3e+02 14 72 .. 191 250 .. 174 253 .. 0.73 3 ! 14.9 0.0 3.3e-06 0.0099 175 210 .. 390 425 .. 382 433 .. 0.89 Alignments for each domain: == domain 1 score: -4.7 bits; conditional E-value: 3.2 CMS1 7 krkaendekgkkeksekkRskkkerkke 34 kr++ + ++ k ek +++R k+++++++ Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 59 KREE-RLAREKEEKERERRVKEESKESK 85 2222.22333333333344333333222 PP == domain 2 score: 0.1 bits; conditional E-value: 0.11 CMS1 14 ekgkkeksekkRskkkerkkeklketqDveaglneav.armdpelLadylasklkrfekD 72 e+ k+e+ + + + +e+k++ ++e+ + + ++ + +++ Lad + f +D Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 191 EEQKRERARAREEAAQEFKRRRIQELSSLDKQVDSKMgSHWSEKALADMTERDWRIFRED 250 555666666677778899999999999777778877724578999999988888777777 PP == domain 3 score: 14.9 bits; conditional E-value: 3.3e-06 CMS1 175 ksrigiavGtpgRiadLleeeslsvdeLkrivlDas 210 ++ + i +GtpgR++d +e++ l +++ +++vlD + Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 390 RNGVEIVIGTPGRMLDCIENNYLVLNQCNYVVLDEA 425 677899****************************75 PP >> Helicase_C_2 Helicase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.0 1e-05 0.03 8 79 .. 539 608 .. 531 617 .. 0.91 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 1e-05 Helicase_C_2 8 vpggvlvffpSyslleevverlkeeleskkievfeekeesrekvleeykeskgaillavcrgk 70 + ++v+vf++S ++ +++ ++l++ + ++i+ ++++re++l+++++++ ++l+a+ Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 539 SSDKVIVFVNSKKQGDNLGRHLDTLGYHSGILHGGRSQDQREETLDQFRSGEVQVLVATD--V 599 5699*********************999998888889**********************9..8 PP Helicase_C_2 71 vseGidfsd 79 G+d++d Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 600 AARGLDIPD 608 899999987 PP >> DNA_pol3_chi DNA polymerase III chi subunit, HolC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.0 0.4 0.00039 1.2 79 123 .. 158 202 .. 152 211 .. 0.85 2 ? -2.7 0.0 1.5 4.5e+03 87 116 .. 497 526 .. 488 536 .. 0.78 3 ? 0.9 0.0 0.12 3.5e+02 25 68 .. 536 579 .. 516 584 .. 0.75 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.00039 DNA_pol3_chi 79 eeenpngeadvlinldgavpeeaerfervvelvdgdde.akqaaRe 123 + +++++ +++l++l+++ +ea+r+e e+ ++++ ++++aRe Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 158 Q-KEQRKDSNFLMSLSEKRINEANRYEDTSEILTEEQKrERARARE 202 3.34666699***********************9998888888887 PP == domain 2 score: -2.7 bits; conditional E-value: 1.5 DNA_pol3_chi 87 advlinldgavpeeaerfervvelvdgdde 116 + vl+ + ++ + +r+e+ v +v++ ++ Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 497 HPVLVRIGDEDSGKNKRIEQRVLFVPEAQK 526 678888888888888889888888887766 PP == domain 3 score: 0.9 bits; conditional E-value: 0.12 DNA_pol3_chi 25 alrqgkrvlvlcedeeqaealDelLWtfepesFlPHglageapa 68 +++ ++v+v +++++q ++l ++L t+ +s + Hg +++++ Spumella-elongata-CCAP-955-1_CAMPEP_0184978736 536 RMASSDKVIVFVNSKKQGDNLGRHLDTLGYHSGILHGGRSQDQR 579 456778999************99998887777777776666555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (701 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1378 (0.0929135); expected 296.6 (0.02) Passed bias filter: 333 (0.022453); expected 296.6 (0.02) Passed Vit filter: 37 (0.00249477); expected 14.8 (0.001) Passed Fwd filter: 8 (0.000539411); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.45 # Mc/sec: 4066.32 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0185014684 [L=408] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-42 143.6 0.0 1.6e-31 109.1 0.0 2.3 2 DEAD DEAD/DEAH box helicase 3e-38 129.5 0.5 4e-19 68.2 0.1 2.6 2 Helicase_C Helicase conserved C-terminal domain 5.2e-05 22.5 0.0 0.21 10.6 0.0 2.3 2 tRNA-synt_1b tRNA synthetases class I (W and Y) 0.0057 16.3 0.1 0.025 14.3 0.0 2.0 2 AAA_19 Part of AAA domain ------ inclusion threshold ------ 0.012 14.7 0.3 0.038 13.0 0.0 1.9 2 CMS1 U3-containing 90S pre-ribosomal complex subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 109.1 0.0 5.3e-35 1.6e-31 8 139 .. 1 132 [. 1 140 [. 0.95 2 ! 32.5 0.0 1.8e-11 5.4e-08 121 165 .. 141 183 .. 134 187 .. 0.88 Alignments for each domain: == domain 1 score: 109.1 bits; conditional E-value: 5.3e-35 HHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHHHHHHHTT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 8 iplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtlnnlkqfkk 69 i+ +l+g+d++++a+ G+GKT+ f+i ++q+l + k + li+aPtreLa+q+ + +++ Spumella-elongata-CCAP-955-1_CAMPEP_0185014684 1 IKPLLDGRDTIGQAQSGTGKTATFVIGMLQRLDVNlKACQGLILAPTRELANQIQKVTLALGD 63 677899****************************99999************************ PP TSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 70 ypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrll 132 y+k+r++ +igg++ + d+ +l++g +++vgTpgr+ d++s+++l++ ++ ++VlDEad++l Spumella-elongata-CCAP-955-1_CAMPEP_0185014684 64 YMKIRCHSCIGGTSVR-DDIDKLREGQHVIVGTPGRVFDMISKRHLRVDDLLTFVLDEADEML 125 **************77.999999999*****************999***************** PP STTTHHH CS xxxxxxx RF DEAD 133 sqgfsdq 139 s gf+d Spumella-elongata-CCAP-955-1_CAMPEP_0185014684 126 SRGFKDX 132 ****995 PP == domain 2 score: 32.5 bits; conditional E-value: 1.8e-11 EEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 121 rllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkd 165 ++VlDEad++ls gf+dq+++i + l + ++qv+++SAT+ + Spumella-elongata-CCAP-955-1_CAMPEP_0185014684 141 LTFVLDEADEMLSRGFKDQIYDIFKCL--PPNIQVCLFSATMAPE 183 578*********************999..778*********9855 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 59.2 0.0 8.5e-20 2.5e-16 2 62 .. 255 315 .. 254 319 .. 0.95 2 ! 68.2 0.1 1.3e-22 4e-19 28 78 .] 319 369 .. 317 369 .. 0.98 Alignments for each domain: == domain 1 score: 59.2 bits; conditional E-value: 8.5e-20 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSS CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlpr 62 +l k+++ + +h++l q+er+ ++++f++g+s+vl++t+ ++rGid+++v++Vinfdlp Spumella-elongata-CCAP-955-1_CAMPEP_0185014684 255 QLAKRDFTISTMHADLDQKERDLVMREFRSGSSRVLISTDLLARGIDVQQVSLVINFDLPH 315 67889999***************************************************95 PP == domain 2 score: 68.2 bits; conditional E-value: 1.3e-22 HHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHHTTSSTTT CS Helicase_C 28 qfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRag 78 +f++g+s+vl++t+ ++rGid+++v++Vinfdlp+++++y++riGR gR+g Spumella-elongata-CCAP-955-1_CAMPEP_0185014684 319 EFRSGSSRVLISTDLLARGIDVQQVSLVINFDLPQNMENYLHRIGRSGRFG 369 7************************************************87 PP >> tRNA-synt_1b tRNA synthetases class I (W and Y) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.6 0.0 0.00015 0.43 41 93 .. 261 314 .. 248 318 .. 0.92 2 ! 10.6 0.0 7.2e-05 0.21 72 119 .. 331 379 .. 317 398 .. 0.80 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.00015 EEEEHHHHCTTTTT..SSHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEECHHHH CS tRNA-synt_1b 41 fliaDltAligdps.kaeerklrkreeelenakaqlakgldpekaeivlqsewl 93 f i ++A +++++ + +r++r+ + ++ + +la+g+d +++++v++ + + Spumella-elongata-CCAP-955-1_CAMPEP_0185014684 261 FTISTMHADLDQKErDLVMREFRSGSSRVLISTDLLARGIDVQQVSLVINFDLP 314 6678899*******99**********9999999*****************9987 PP == domain 2 score: 10.6 bits; conditional E-value: 7.2e-05 HHHHHHTCHTTTEEEEECHHHHTCH.HHHHHHHHHCTCHCHHHHHHHHH CS tRNA-synt_1b 72 kaqlakgldpekaeivlqsewlehl.elaellrdlgklgslnrmlqfks 119 +la+g+d +++++v++ + ++++ +++ + + g++g+ +++f + Spumella-elongata-CCAP-955-1_CAMPEP_0185014684 331 TDLLARGIDVQQVSLVINFDLPQNMeNYLHRIGRSGRFGRKGVAINFVT 379 479********************99789999999999998888888777 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.0 8.4e-06 0.025 16 63 .. 13 60 .. 3 81 .. 0.80 2 ? -1.5 0.0 0.7 2.1e+03 49 74 .. 243 268 .. 226 270 .. 0.60 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 8.4e-06 AAA_19 16 tGgPGtGKTttlaaiiaall..aarekpgrsvllvaptgraakrlserl.l 63 ++ GtGKT+t + + ++l ++++ l++apt++ a ++++++ + Spumella-elongata-CCAP-955-1_CAMPEP_0185014684 13 QAQSGTGKTATFVIGMLQRLdvNLKACQ---GLILAPTRELANQIQKVTlA 60 7888****************54323333...5***************9962 PP == domain 2 score: -1.5 bits; conditional E-value: 0.7 AAA_19 49 aptgraakrlserlllgvekastihr 74 t+r ++ l+e l+ + + st h+ Spumella-elongata-CCAP-955-1_CAMPEP_0185014684 243 CNTRRKVDFLAEQLAKRDFTISTMHA 268 36777777777777333444666666 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 0.0 1.3e-05 0.038 167 209 .. 79 120 .. 76 125 .. 0.85 2 ? -2.3 0.0 0.6 1.8e+03 46 68 .. 236 258 .. 218 298 .. 0.70 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 1.3e-05 CMS1 167 kesitylkksrigiavGtpgRiadLleeeslsvdeLkrivlDa 209 +++i l++ + + vGtpgR+ d++ + l vd+L vlD Spumella-elongata-CCAP-955-1_CAMPEP_0185014684 79 RDDIDKLREGQH-VIVGTPGRVFDMISKRHLRVDDLLTFVLDE 120 566777776664.669*************************96 PP == domain 2 score: -2.3 bits; conditional E-value: 0.6 CMS1 46 lneavarmdpelLadylasklkr 68 +++a++ + + +d+la++l + Spumella-elongata-CCAP-955-1_CAMPEP_0185014684 236 ITQAIIYCNTRRKVDFLAEQLAK 258 67778888888888888777644 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (408 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 481 (0.0324321); expected 296.6 (0.02) Passed bias filter: 416 (0.0280494); expected 296.6 (0.02) Passed Vit filter: 33 (0.00222507); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.23u 0.31s 00:00:00.54 Elapsed: 00:00:00.65 # Mc/sec: 1638.49 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 [L=602] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-37 127.0 0.0 8.7e-35 119.6 0.0 2.4 2 DEAD DEAD/DEAH box helicase 8.3e-26 89.6 0.1 2e-25 88.4 0.1 1.7 1 Helicase_C Helicase conserved C-terminal domain 4e-06 26.7 0.5 8.2e-05 22.5 0.0 2.8 2 ResIII Type III restriction enzyme, res subunit 0.00063 19.4 1.2 0.0019 17.9 0.2 2.3 3 AAA_19 Part of AAA domain 0.0031 16.1 1.7 0.012 14.1 0.0 2.2 2 T4SS-DNA_transf Type IV secretory system Conjugative DNA tra 0.0057 16.6 0.0 0.015 15.2 0.0 1.6 1 Helicase_C_2 Helicase C-terminal domain ------ inclusion threshold ------ 0.98 7.3 22.1 0.89 7.5 8.2 2.3 2 CDC45 CDC45-like protein 3.3 7.7 10.1 13 5.8 3.9 2.5 2 DUF4484 Domain of unknown function (DUF4484) 5.7 6.4 16.9 7.1 6.1 1.1 2.5 2 Sigma70_ner Sigma-70, non-essential region Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 119.6 0.0 5.3e-38 8.7e-35 1 134 [. 148 285 .. 148 305 .. 0.87 2 ! 4.9 0.0 0.0099 16 135 168 .. 330 362 .. 323 363 .. 0.81 Alignments for each domain: == domain 1 score: 119.6 bits; conditional E-value: 5.3e-38 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT..EEEEEESSHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx..xxxxxxxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq..kalivaPtreLaeqt 60 tpiQ +aip+il+g+dvl++a+TGsGKT+af+ip +++l+ + + +al++aPtreLaeq+ Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 148 TPIQMQAIPAILSGRDVLACAPTGSGKTAAFVIPTVSHLKAPgN-NgiRALLLAPTRELAEQI 209 89*************************************77643.369*************** PP HHHHHHHTTTSSCCEEEE...TTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTE CS xxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 61 lnnlkqfkkypklrvlli...iggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqv 120 ++++ ++ + +++++l+ ++++a+a +++s+ +++ d++v+Tp rl+++v+++ ++ls+v Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 210 HREVLRLVDGRRFKICLLgkkVSSKAIASQDKSW-SRKFDLLVATPLRLLSVVRAQAIDLSHV 271 ******************5554555566444444.567*****************999***** PP EEEEEETHHHHHST CS xxxxxxxxxxxxxx RF DEAD 121 rllVlDEadrllsq 134 ++lVlDEad+l + Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 272 QILVLDEADKLFEL 285 **********9874 PP == domain 2 score: 4.9 bits; conditional E-value: 0.0099 TTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 135 gfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 +f +q+++il++ c k +q ++SAT+ vk+ Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 330 SFLSQVDEILSQ-CPSKGVQRALFSATVGPFVKE 362 788899999999.67779*********9977776 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.4 0.1 1.2e-28 2e-25 3 78 .] 432 507 .. 430 507 .. 0.97 Alignments for each domain: == domain 1 score: 88.4 bits; conditional E-value: 1.2e-28 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHH CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvt 65 l gi+v ++h+e ++ +ree++++f+ag+ vl++t+ ++rGid+++v++Vin+dlp + Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 432 LIYDGINVDVMHAERSAAQREEVIRRFRAGEIWVLICTDLMARGIDFKGVQMVINYDLPLTAV 494 66789********************************************************** PP HHHHHHTTSSTTT CS Helicase_C 66 syiQriGRtgRag 78 yi+riGRtgRag Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 495 AYIHRIGRTGRAG 507 ***********97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.5 1.2 0.54 9e+02 76 107 .. 52 84 .. 22 130 .. 0.62 2 ! 22.5 0.0 5e-08 8.2e-05 3 85 .. 146 243 .. 145 325 .. 0.74 Alignments for each domain: == domain 1 score: -0.5 bits; conditional E-value: 0.54 G...GEEEESSS-B---SEEEEEHHHHH..... CS ResIII 76 kkiefekkniavakkdklfgeeqkkskd.keek 107 +k +k ++ ++++++ ++e+qk+++d ++e+ Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 52 NKAPSNKRKNDEESDNESDDESQKSNNDsNSES 84 333333333333444443333333333303333 PP == domain 2 score: 22.5 bits; conditional E-value: 5e-08 EE-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHHHHH.HHHHH-S......-EEEEES CS ResIII 3 klrpyQeeaienllesiekedekkrglivmaTGtGKTlvaas.liarlar......kflflvp 58 ++ p Q++ai ++l + +l ++TG+GKT +++l ++l+l+p Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 146 EPTPIQMQAIPAILS-------GRDVLACAPTGSGKTAAFVIpTVSHLKApgnngiRALLLAP 201 577889999999993.......4788999********9988524455555999********** PP SHHHHHHHHHHG...............GGGTGG...GEEEES CS ResIII 59 rkelleqaleef...............kkfeskkiefekkni 85 ++el eq ++e kk +sk i+ + k++ Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 202 TRELAEQIHREVlrlvdgrrfkicllgKKVSSKAIASQDKSW 243 *********998666666666555555555555555555544 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 0.2 1.1e-06 0.0019 4 63 .. 156 217 .. 153 238 .. 0.77 2 ? -2.5 0.0 2.6 4.3e+03 44 63 .. 349 377 .. 344 388 .. 0.67 3 ? -2.8 0.0 3.3 5.4e+03 49 62 .. 501 514 .. 496 527 .. 0.73 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 1.1e-06 AAA_19 4 eaala.gnpllvvtGgPGtGKTt.tlaaiiaallaarekp.grsvllvaptgraakrl.serl 62 a+ g+ +l+ ++ G+GKT+ ++ +++l a + g + ll+apt++ a+++ +e+l Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 156 P-AILsGRDVLA-CAPTGSGKTAaFVIPTVSHLKA--PGNnGIRALLLAPTRELAEQIhREVL 214 4.4445899999.9********7257778888884..4666999**************66666 PP AAA_19 63 ..l 63 + Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 215 rlV 217 552 PP == domain 2 score: -2.5 bits; conditional E-value: 2.6 AAA_19 44 svllvaptgraakrlserl.........l 63 + l+ a g ++k+l++++ + Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 349 RALFSATVGPFVKELASSFlsnpvsitiG 377 67788888999999988776655555553 PP == domain 3 score: -2.8 bits; conditional E-value: 3.3 AAA_19 49 aptgraakrlserl 62 + tgra +r + + Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 501 GRTGRAGRRGEAIT 514 67999999986666 PP >> T4SS-DNA_transf Type IV secretory system Conjugative DNA transfer # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.2 0.5 0.12 2e+02 161 241 .. 29 105 .. 6 117 .. 0.75 2 ! 14.1 0.0 7.6e-06 0.012 47 66 .. 164 183 .. 140 191 .. 0.91 Alignments for each domain: == domain 1 score: 0.2 bits; conditional E-value: 0.12 T4SS-DNA_transf 161 evllkketetegqtlkvvramlsepnledenkeeaklleelkgkeedrvgdnlrvlvektdet 223 + ++k ++ +q++++ + +s++ ++++ k ee++++ d++++ + ++ de Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 29 DIFRSKASKQSKQVIDLFGDDDSNK----APSNKRKNDEESDNESDDESQKSNNDSNSESDED 87 5667777777888888888888887....7777777777777777777777777777777777 PP T4SS-DNA_transf 224 rsSvlgtakselalyadp 241 +v + e++ +++ Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 88 DEGVPLEKDDEINAFRNR 105 778877777777777765 PP == domain 2 score: 14.1 bits; conditional E-value: 7.6e-06 T4SS-DNA_transf 47 vlvvAptrsgKgvgvviPnl 66 vl Apt+sgK++++viP++ Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 164 VLACAPTGSGKTAAFVIPTV 183 6789**************97 PP >> Helicase_C_2 Helicase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 9.1e-06 0.015 12 92 .. 415 491 .. 404 500 .. 0.88 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 9.1e-06 Helicase_C_2 12 vlvffpSyslleevverlkeeleskkievfeekeesrekvleeykeskgaillavcrgkvseG 74 vl+f +S + +e++++l ++ + ++ e ++++re+v++++++++ +l+++ + G Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 415 VLLFLQSIDRAKELYRELIYDGINVDVMHAERSAAQREEVIRRFRAGEIWVLICTD--LMARG 475 899*******************988888888899*********************9..***** PP Helicase_C_2 75 idfsddllraviivglPf 92 idf++ + +vi lP+ Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 476 IDFKGVQ--MVINYDLPL 491 ****755..566666665 PP >> CDC45 CDC45-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.5 8.2 0.00054 0.89 88 182 .. 5 106 .. 2 143 .. 0.61 2 ? 5.2 1.8 0.0026 4.2 100 152 .. 274 324 .. 256 343 .. 0.49 Alignments for each domain: == domain 1 score: 7.5 bits; conditional E-value: 0.00054 CDC45 88 nleNvfg............asdqvvvlddgdieeelqeeeeekdayealvemkeeee.....e 133 n+ N+f+ +++ + ++ ++ ++ q + d + + ++ + Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 5 NMSNIFAslasgtkfsgkrNQEAIDIFRSKASKQSKQVI----DLFGDDDSN----KapsnkR 59 667777777777777777777777777776666664444....444444222....1222225 PP CDC45 134 esdedsdseedeeseessksekeksesdedeeddddeedederkrkrsn 182 ++de+sd+e+d+es++s++++ +sesded+e+ e+d+++++ + + Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 60 KNDEESDNESDDESQKSNNDS--NSESDEDDEGVPLEKDDEINAFRNRM 106 556666666655555555543..56666666666655555554443333 PP == domain 2 score: 5.2 bits; conditional E-value: 0.0026 CDC45 100 vvlddgdieeelqeeeeekdayealvemkeeeeeesdedsdseedeeseessk 152 +vld+ d el++ +++k+ e+ +e++e e+es++++++ ++e se++ + Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 274 LVLDEADKLFELDNGGKNKNQEEDVSEQEE--ESESENEGEQSDNEGSEKAPA 324 455554444444444333333333322221..122222222222222222222 PP >> DUF4484 Domain of unknown function (DUF4484) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 3.9 0.0076 13 89 127 .. 63 100 .. 20 113 .. 0.67 2 ? 3.5 0.1 0.04 65 90 121 .. 294 333 .. 284 376 .. 0.57 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0076 DUF4484 89 eddddeeddeeepeesddeteddeeddsrsplddkesie 127 e++d+e+dde++++++d+++e+d edd+ pl+++++i+ Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 63 EESDNESDDESQKSNNDSNSESD-EDDEGVPLEKDDEIN 100 34445555555444444444444.788889998888776 PP == domain 2 score: 3.5 bits; conditional E-value: 0.04 DUF4484 90 ddddeeddeeepeesddeteddeeddsrspl........d 121 +++d +++eee+e++++ ++d+e+++++p + Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 294 QEEDVSEQEEESESENEGEQSDNEGSEKAPAervrtsflS 333 4445555555556666666677777777777443333332 PP >> Sigma70_ner Sigma-70, non-essential region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 5.5 0.0094 16 24 83 .. 41 95 .. 33 135 .. 0.51 2 ? 6.1 1.1 0.0043 7.1 42 81 .. 293 328 .. 254 344 .. 0.54 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.0094 Sigma70_ner 24 dlisGfidpaaaaeeeeaeeeseddeeeeeddddddededeeeeseeadegpdpeearer 83 ++i+ f d+ +++++++ + + dee+++++dd+ ++++++ s++++ + d +e+ Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 41 QVIDLFGDD---DSNKAPSNKRKNDEESDNESDDESQKSNND--SNSESDEDDEGVPLEK 95 567777777...333333333333333333322222222222..3333333333333333 PP == domain 2 score: 6.1 bits; conditional E-value: 0.0043 Sigma70_ner 42 eeeseddeeeeeddddddededeee...eseeadegpdpeear 81 ++e++ +e+e +e+e+e+e +++e++e++ e++r Spumella-elongata-CCAP-955-1_CAMPEP_0184975692 293 NQEEDVSEQE-------EESESENEgeqSDNEGSEKAPAERVR 328 1111111111.......11111111122334444444444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (602 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1203 (0.0811139); expected 296.6 (0.02) Passed bias filter: 415 (0.0279819); expected 296.6 (0.02) Passed Vit filter: 63 (0.00424786); expected 14.8 (0.001) Passed Fwd filter: 25 (0.00168566); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.67 # Mc/sec: 2345.40 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0184991886 [L=220] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-28 98.6 0.0 2.3e-28 97.8 0.0 1.4 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.037 12.5 0.0 0.048 12.1 0.0 1.1 1 RgpF Rhamnan synthesis protein F Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 97.8 0.0 3.1e-32 2.3e-28 2 78 .] 76 152 .. 75 152 .. 0.98 Alignments for each domain: == domain 1 score: 97.8 bits; conditional E-value: 3.1e-32 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsv 64 l + g++v+ +hg+ +q++re +++f++g++++lvat+va+rG+d+++v Vinfd+p++ Spumella-elongata-CCAP-955-1_CAMPEP_0184991886 76 SLDNSGYRVCSIHGGKSQEQREWAMNSFKEGRYDILVATDVAGRGLDIEGVMQVINFDMPKTI 138 68899********************************************************** PP HHHHHHHTTSSTTT CS Helicase_C 65 tsyiQriGRtgRag 78 ++y +riGRtgRag Spumella-elongata-CCAP-955-1_CAMPEP_0184991886 139 EDYTHRIGRTGRAG 152 ************97 PP >> RgpF Rhamnan synthesis protein F # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 6.5e-06 0.048 302 382 .. 43 114 .. 38 133 .. 0.77 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 6.5e-06 RgpF 302 dekkaeieealakakgvknvkvrvvknrGRDissllislkdelvddrYDlvcrlhtkkskead 364 ++kk+ +ee+l+ a+ ++v+v + + D+++ + l d+ vc +h ks+e Spumella-elongata-CCAP-955-1_CAMPEP_0184991886 43 AKKKKRLEEMLVGAEP--PIIVFVNQKKAVDVLA------KSL-DNSGYRVCSIHGGKSQEQR 96 5778888888855554..5666666666666544......334.4444579************ PP RgpF 365 fsagesfkeelienllkt 382 +a +sfke ++ l+ t Spumella-elongata-CCAP-955-1_CAMPEP_0184991886 97 EWAMNSFKEGRYDILVAT 114 **************9987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (220 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 353 (0.0238015); expected 296.6 (0.02) Passed bias filter: 338 (0.0227901); expected 296.6 (0.02) Passed Vit filter: 22 (0.00148338); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.18u 0.22s 00:00:00.40 Elapsed: 00:00:00.44 # Mc/sec: 1305.17 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0185012796 [L=641] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.5e-41 139.2 0.0 4.1e-19 68.6 0.0 3.5 3 DEAD DEAD/DEAH box helicase 2.5e-22 78.5 0.0 1e-21 76.5 0.0 2.1 2 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.15 11.8 0.0 0.43 10.3 0.0 1.7 2 ResIII Type III restriction enzyme, res subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 65.0 0.0 1.1e-21 5.5e-18 1 85 [. 92 188 .. 92 191 .. 0.95 2 ! 68.6 0.0 8.3e-23 4.1e-19 58 163 .. 190 327 .. 188 333 .. 0.87 3 ? 1.8 0.0 0.028 1.4e+02 70 102 .. 407 445 .. 368 452 .. 0.79 Alignments for each domain: == domain 1 score: 65.0 bits; conditional E-value: 1.1e-21 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT...........EEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx...........xxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq...........kaliva 51 tp+Q+++++l++gg+dv+++++TG+GKT af +p+i+++ ++ q +++++ Spumella-elongata-CCAP-955-1_CAMPEP_0185012796 92 TPVQSQSYDLVYGGDDVVARSRTGTGKTFAFGLPLIEKIVRSgAMQdvnprsrgavpLVIVLE 154 79**********************************99999877779**************** PP SSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 52 PtreLaeqtlnnlkqfkkypklrvlliiggvala 85 PtreLa q++++l++++++ ++rv i+gg++ + Spumella-elongata-CCAP-955-1_CAMPEP_0185012796 155 PTRELAIQVAQELSSVCNEYGMRVQTIYGGSSFD 188 *****************************99855 PP == domain 2 score: 68.6 bits; conditional E-value: 8.3e-23 HHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 58 eqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqv 120 +q++++l++++++ ++rv i+gg++ + q+ +l++gv+i+v+Tpgr++d++ +g+ +ls + Spumella-elongata-CCAP-955-1_CAMPEP_0185012796 190 RQVAQELSSVCNEYGMRVQTIYGGSSFD-VQADNLRRGVQILVATPGRMLDHITRGTVDLSGI 251 79************************99.999999999******************99***** PP EEEEEETHHHHHSTTTHHHHHHHHHHSHHCT............T................... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............x................... RF DEAD 121 rllVlDEadrllsqgfsdqlnqilqilcdgk............r................... 152 + +VlDE d++l++gf++ +++i++ ++ + + Spumella-elongata-CCAP-955-1_CAMPEP_0185012796 252 KHVVLDEGDTMLEMGFQKSVESIIRNVKMPGeksrkaaasaleEnysddsydddedeetgkak 314 ************************998666666666666555505556666667777788888 PP ..SEEEEEESS-T CS ..xxxxxxxxxxx RF DEAD 153 ..lqvivlSATlp 163 +q++++SAT+p Spumella-elongata-CCAP-955-1_CAMPEP_0185012796 315 aaVQMLLFSATMP 327 88*********98 PP == domain 3 score: 1.8 bits; conditional E-value: 0.028 T...SSCCEEEETTTSEHHHHHHHHH...TT.-SEEEEE CS x...xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF DEAD 70 y...pklrvlliiggvalardqlsvl...dngvdivvgT 102 +l++ +++g+ ++a +q++ ++vd++v+T Spumella-elongata-CCAP-955-1_CAMPEP_0185012796 407 SecfGQLNCQVLHGDISQASRQTTIKafkAGNVDVLVAT 445 23446789999999999886666555889888****999 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.0 1.2 6.1e+03 4 28 .. 201 225 .. 199 233 .. 0.75 2 ! 76.5 0.0 2.1e-25 1e-21 8 78 .] 413 483 .. 409 483 .. 0.97 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 1.2 HHTTS-EEEESTTSTHHHHHHHHHH CS Helicase_C 4 ekkgikvailhgelpqnereeileq 28 +++g++v ++g+ + + + + l++ Spumella-elongata-CCAP-955-1_CAMPEP_0185012796 201 NEYGMRVQTIYGGSSFDVQADNLRR 225 6788899999998887777777665 PP == domain 2 score: 76.5 bits; conditional E-value: 2.1e-25 S-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHH CS Helicase_C 8 ikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQr 70 +++ +lhg+++q +r+ +++ f+ag+ +vlvat+va+rG+d+ +v++V + +p + ++y++r Spumella-elongata-CCAP-955-1_CAMPEP_0185012796 413 LNCQVLHGDISQASRQTTIKAFKAGNVDVLVATDVAARGLDIAGVDLVLHIAPPNDADTYVHR 475 67899********************************************************** PP HTTSSTTT CS Helicase_C 71 iGRtgRag 78 +GRtgRag Spumella-elongata-CCAP-955-1_CAMPEP_0185012796 476 SGRTGRAG 483 ******97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.3 0.0 8.7e-05 0.43 30 100 .. 110 193 .. 75 222 .. 0.82 2 ? -3.2 0.0 1.3 6.2e+03 61 84 .. 489 513 .. 487 545 .. 0.52 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 8.7e-05 EEESTTSTHHHHHHH.HHHHH-S................-EEEEESSHHHHHHHHHHGGGGTG CS ResIII 30 ivmaTGtGKTlvaas.liarlar................kflflvprkelleqaleefkkfes 75 TGtGKT+ li+++ r +++l p++el q +e+ s Spumella-elongata-CCAP-955-1_CAMPEP_0185012796 110 ARSRTGTGKTFAFGLpLIEKIVRsgamqdvnprsrgavpLVIVLEPTRELAIQVAQEL----S 168 5678*******887448999999999999999*****9999*****************....8 PP G...GEEEESSS-B---SEEEEEHH CS ResIII 76 kkiefekkniavakkdklfgeeqkk 100 + +++ +++ + ++ f+ q Spumella-elongata-CCAP-955-1_CAMPEP_0185012796 169 SVCNEYGMRVQTIYGGSSFDVRQVA 193 8888888887777777666655544 PP == domain 2 score: -3.2 bits; conditional E-value: 1.3 HHHHHHHHHG...GGGTGG...GEEEE CS ResIII 61 elleqaleef...kkfeskkiefekkn 84 +ll+q ++++ +k +f+ + Spumella-elongata-CCAP-955-1_CAMPEP_0185012796 489 ILLSQYRDDYklnA--FEKALKFQFQT 513 68888888884321..12222222222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (641 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 527 (0.0355337); expected 296.6 (0.02) Passed bias filter: 445 (0.0300047); expected 296.6 (0.02) Passed Vit filter: 40 (0.00269705); expected 14.8 (0.001) Passed Fwd filter: 3 (0.000202279); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.35u 0.30s 00:00:00.64 Elapsed: 00:00:00.45 # Mc/sec: 3718.27 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 [L=400] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-43 147.5 1.1 3.9e-43 146.8 0.2 1.7 2 DEAD DEAD/DEAH box helicase 3.3e-28 97.3 0.6 1.5e-27 95.2 0.3 2.1 2 Helicase_C Helicase conserved C-terminal domain 0.0003 20.4 0.3 0.0009 18.9 0.0 1.9 2 AAA_19 Part of AAA domain 0.00033 20.5 0.1 0.0006 19.6 0.1 1.6 1 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.012 14.1 0.1 0.76 8.1 0.0 2.1 2 DUF1253 Protein of unknown function (DUF1253) 0.014 14.5 0.1 0.045 12.8 0.0 1.8 2 tRNA-synt_1b tRNA synthetases class I (W and Y) 0.018 14.0 0.0 0.061 12.3 0.0 1.8 2 CMS1 U3-containing 90S pre-ribosomal complex subuni 0.019 14.5 0.1 0.059 12.9 0.0 1.8 2 AAA_30 AAA domain 0.02 14.5 0.0 0.036 13.7 0.0 1.4 1 Helicase_RecD Helicase 0.038 13.2 0.2 0.091 12.0 0.1 1.4 1 UvrD-helicase UvrD/REP helicase N-terminal domain 0.079 13.1 0.1 0.35 11.0 0.1 2.1 1 AAA_22 AAA domain 0.084 12.6 0.1 0.34 10.7 0.1 1.9 2 Fanconi_A Fanconi anaemia group A protein Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 146.8 0.2 3.1e-46 3.9e-43 2 164 .. 52 213 .. 51 217 .. 0.95 2 ? -1.6 0.0 1.3 1.6e+03 65 102 .. 283 323 .. 256 339 .. 0.67 Alignments for each domain: == domain 1 score: 146.8 bits; conditional E-value: 3.1e-46 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtlnn 63 +iQ++ai+ l g+dv+++a+ G+GKT+ f+i ++q+l + kd +al++aPtreLa+q+++ Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 52 AIQQRAIKPTLLGKDVIAQAQSGTGKTATFAIGILQKLDMNiKDCQALVLAPTRELAQQIVKV 114 69*********99************************************************** PP HHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 64 lkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlD 126 ++++++ +++++++++gg+a + d+ + l++gv++vvgTpgr+ d+++++ l+l +v l+VlD Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 115 ISSLGDFMNIKIHACVGGTAVR-DDIRTLQEGVHVVVGTPGRVYDMINRRALRLDHVALFVLD 176 ********************77.999999999*****************999*********** PP THHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-T.H CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF DEAD 127 EadrllsqgfsdqlnqilqilcdgkrlqvivlSATlp.k 164 Ead++ls gf++q++++ + + + +q+ ++SAT+p + Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 177 EADEMLSRGFKEQIYDVFKYMPEM--VQCTIFSATMPlE 213 *********************666..**********944 PP == domain 2 score: -1.6 bits; conditional E-value: 1.3 HHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 65 kqfkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 +q ++++++ v ++g+ +++ ++++ + ++ +++++T Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 283 TQKMQEKDFTVSSMHGDLDQR-ERDTIMrefrSGSSRVLITT 323 455555677888888888844.44444446766656666665 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.0 1.2 1.5e+03 12 38 .. 204 230 .. 198 233 .. 0.81 2 ! 95.2 0.3 1.2e-30 1.5e-27 2 78 .] 285 361 .. 284 361 .. 0.97 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 1.2 EESTTSTHHHHHHHHHHHHTTSSSEEE CS Helicase_C 12 ilhgelpqnereeileqfnagkskvlv 38 + + +++ e +e+ ++f ++ k+lv Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 204 TIFSATMPLEVLEVTQKFMRDPIKILV 230 4556688889999*******9999998 PP == domain 2 score: 95.2 bits; conditional E-value: 1.2e-30 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsv 64 ++++k++ v +hg+l q+er+ i+++f++g+s+vl++t+ ++rGid+++v++Vin+dlp+++ Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 285 KMQEKDFTVSSMHGDLDQRERDTIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNR 347 6788999******************************************************** PP HHHHHHHTTSSTTT CS Helicase_C 65 tsyiQriGRtgRag 78 ++yi+riGR gR+g Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 348 ENYIHRIGRSGRFG 361 ************87 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.9 0.0 7.2e-07 0.0009 2 62 .. 57 115 .. 56 144 .. 0.78 2 ? -2.0 0.0 2.4 2.9e+03 6 20 .. 141 154 .. 133 155 .. 0.72 Alignments for each domain: == domain 1 score: 18.9 bits; conditional E-value: 7.2e-07 AAA_19 2 aveaalagnpllvvtGgPGtGKTttlaaiiaallaarekpgrsvllvaptgraakrlserl 62 a++ +l g +++ ++ GtGKT+t a +i + l+ k + + l++apt++ a+++ +++ Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 57 AIKPTLLGKDVIA-QAQSGTGKTATFAIGILQKLDMNIK-DCQALVLAPTRELAQQIVKVI 115 5554455788999.********************54444.555**************8888 PP == domain 2 score: -2.0 bits; conditional E-value: 2.4 AAA_19 6 alagnpllvvtGgPG 20 +l+ +++ vv G PG Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 141 TLQ-EGVHVVVGTPG 154 444.89999999999 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.6 0.1 4.9e-07 0.0006 8 85 .. 54 129 .. 48 210 .. 0.80 Alignments for each domain: == domain 1 score: 19.6 bits; conditional E-value: 4.9e-07 HHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHH CS ResIII 8 QeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar......kflflvprkelle 64 Q++ai+ +l k ++ ++ GtGKT + a i++ + ++l+l+p++el + Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 54 QQRAIKPTL-------LGKDVIAQAQSGTGKTATFAIGILQKLDmnikdcQALVLAPTRELAQ 109 666666666.......2467899999**********5333333357778************** PP HHHHHGGGGTGG...GEEEES CS ResIII 65 qaleefkkfeskkiefekkni 85 q + + + ++++++ + + Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 110 QIVKVI-SSLGDFMNIKIHAC 129 **9988.66666666666555 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.8 0.0 0.012 15 32 60 .. 90 118 .. 69 126 .. 0.85 2 ? 8.1 0.0 0.00062 0.76 300 387 .. 266 351 .. 246 363 .. 0.86 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.012 DUF1253 32 dqgftrpkvLillpfrniakevvdllikl 60 d + ++ L+l p+r+ a+++v+ + +l Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 90 DMNIKDCQALVLAPTRELAQQIVKVISSL 118 555667899***************99776 PP == domain 2 score: 8.1 bits; conditional E-value: 0.00062 DUF1253 300 ekgvlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkgrkkiLLvteRlhf 362 + + +i+ + + +++ +++++++ +++ ++++ + + F +g+ ++L++t+ l Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 266 ITQAIIYCNTRRKVDWLTQKMQEKDFTVSSMHGDLDQRERDTIMREFRSGSSRVLITTDLLA- 327 56666666666666667889999999999*****************************9776. PP DUF1253 363 yrRykikgvkkvifyslPefpefYs 387 r + +++v+ vi y lP+++e Y Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 328 -RGIDVQQVSLVINYDLPTNRENYI 351 .89*****************99886 PP >> tRNA-synt_1b tRNA synthetases class I (W and Y) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.0 0.93 1.2e+03 216 249 .. 213 247 .. 205 257 .. 0.80 2 ? 12.8 0.0 3.7e-05 0.045 31 110 .. 281 362 .. 275 391 .. 0.83 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.93 HHHHHHHHSHCSTTC.SHHHHHHHHHCHHHCHHHH CS tRNA-synt_1b 216 svkkkiqkaitdsde.evrkllklktelsneliei 249 +v ++ qk+++d+ + v+k++ ++ +++ + i i Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 213 EVLEVTQKFMRDPIKiLVKKDELTLEGIKQFYIAI 247 5678899********99999999998888866655 PP == domain 2 score: 12.8 bits; conditional E-value: 3.7e-05 HHHHTTSEEEEEEEHHHHCTTTTT..SSHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEECHHH CS tRNA-synt_1b 31 qlqkaghevffliaDltAligdps.kaeerklrkreeelenakaqlakgldpekaeivlqsew 92 +l+++ +e f + +++ +++ + ++ +r++r+ + ++ + +la+g+d +++++v++++ Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 281 WLTQKMQEKDFTVSSMHGDLDQRErDTIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 343 56666667778889999999999989999*****999999999******************** PP HTCH.HHHHHHHHHCTCHC CS tRNA-synt_1b 93 lehl.elaellrdlgklgs 110 + + +++ + + g++g+ Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 344 PTNReNYIHRIGRSGRFGR 362 9876588888888888765 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 4.9e-05 0.061 166 209 .. 135 177 .. 132 185 .. 0.89 2 ? -2.2 0.0 1.4 1.7e+03 46 155 .. 266 292 .. 248 299 .. 0.57 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 4.9e-05 CMS1 166 lkesitylkksrigiavGtpgRiadLleeeslsvdeLkrivlDa 209 ++++i +l++ + + vGtpgR+ d+++ +l +d++ vlD Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 135 VRDDIRTLQE-GVHVVVGTPGRVYDMINRRALRLDHVALFVLDE 177 5677888876.48899**********************999996 PP == domain 2 score: -2.2 bits; conditional E-value: 1.4 CMS1 46 lneavarmdpelLadylasklkrfekDlssvELeDryisasaikDttsftkPrtldnlpefle 108 +++a++ + + +d+l++k++ Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 266 ITQAIIYCNTRRKVDWLTQKMQ----------------------------------------- 287 4555666666666666665554......................................... PP CMS1 109 klsefttklvkaaksngsPhtlvltlaalRaaDlaravrklqtkdsk 155 +kd+ Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 288 ------------------------------------------EKDFT 292 ..........................................33333 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.0 4.8e-05 0.059 5 105 .. 53 181 .. 50 194 .. 0.61 2 ? -3.4 0.0 4.6 5.7e+03 52 84 .. 272 304 .. 267 318 .. 0.71 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 4.8e-05 AAA_30 5 eQkeaveavltsgdrvavvqGpAGtGKttvlka..lrealeaa.gkrviglAptgkaakvLee 64 Q++a++ +l +d ++ q+ GtGKt + + l+++ + + + ++lApt + a+++ + Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 53 IQQRAIKPTLLGKD--VIAQAQSGTGKTATFAIgiLQKLDMNIkDCQALVLAPTRELAQQIVK 113 58899998888887..88999******9776543277776664269************99888 PP AAA_30 65 e.............lgiearTiasllerldkaeaegrke........................ 90 + ++ ++ +++ + Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 114 VisslgdfmnikihA---------CVGGTAVRDDI---Rtlqegvhvvvgtpgrvydminrra 164 733333333333320.........33222222211...0122334444455555556655556 PP AAA_30 91 ..ldaktllvvDEAgmv 105 ld+ l+v+DEA + Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 165 lrLDHVALFVLDEADEM 181 55666667888887655 PP == domain 2 score: -3.4 bits; conditional E-value: 4.6 AAA_30 52 lAptgkaakvLeeelgiearTiasllerldkae 84 + t + ++ L+++++ + T++s+ ++ld++e Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 272 YCNTRRKVDWLTQKMQEKDFTVSSMHGDLDQRE 304 556677777777777777777777777777755 PP >> Helicase_RecD Helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 0.0 2.9e-05 0.036 3 56 .. 70 125 .. 68 186 .. 0.71 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 2.9e-05 Helicase_RecD 3 tAdRGRGKSaalGlalaalvaegk..snilvtapskenvktlfeflekglealglk 56 +A+ G+GK+a+ ++ + + + ++ ++ lv ap++e ++++++ + + + +++k Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 70 QAQSGTGKTATFAIGILQKLDMNIkdCQALVLAPTRELAQQIVKVISSLGDFMNIK 125 6999******9888888777776666*****************9997665555544 PP >> UvrD-helicase UvrD/REP helicase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.1 7.4e-05 0.091 4 60 .. 53 110 .. 51 127 .. 0.85 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 7.4e-05 HHHHHHHS..-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHH CS UvrD-helicase 4 eqreaias..lggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeE 60 +q++ai++ lg++++ A G+GKT++ a il++++ + i+ + lv+ T+ a+ Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 53 IQQRAIKPtlLGKDVIAQAQSGTGKTATFAIGILQKLDMN-IKDCQALVLAPTRELAQQ 110 689999988899*************************999.998888888877766665 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.1 0.00028 0.35 12 125 .. 72 211 .. 65 218 .. 0.57 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.00028 AAA_22 12 esGvGKTtlarrlaeqldevaeaaekarvvfveapsstspkellkkllralglpakg...... 68 +sG+GKT + +q + ++ ++a + +el++++++ + + + Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 72 QSGTGKTATFAIGILQKL-------DMNIKDCQALVLAPTRELAQQIVKVISSLGDFmnikih 127 677777766555444432.......22222333333333333444444444433333444444 PP AAA_22 69 ......................rltteelleallralrrrrv.glliiDEaqh.Lr...seel 104 +t +++++++r + r ++ l+++DEa+ L+ +e+ Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 128 acvggtavrddirtlqegvhvvVGTPGRVYDMINRRALRLDHvALFVLDEADEmLSrgfKEQI 190 4444444445555555555555667888888888888888888**********8855444666 PP AAA_22 105 leelrdlldetgvklvlvGtp 125 ++ ++ + + ++++ + +p Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 191 YDVFKYMPEMVQCTIFSATMP 211 666677766666666666666 PP >> Fanconi_A Fanconi anaemia group A protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.0 1.8 2.2e+03 48 63 .. 167 182 .. 152 183 .. 0.73 2 ? 10.7 0.1 0.00028 0.34 28 60 .. 259 290 .. 254 293 .. 0.81 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 1.8 Fanconi_A 48 vsWlvlfqltekdlkl 63 + ++lf l e d l Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 167 LDHVALFVLDEADEML 182 56789****9999765 PP == domain 2 score: 10.7 bits; conditional E-value: 0.00028 Fanconi_A 28 ellkavdvCaevleClekrkvsWlvlfqltekd 60 +l ++ + +++ C +rkv Wl ++ ekd Spumella-elongata-CCAP-955-1_CAMPEP_0184986084 259 DLYSTLTITQAIIYCNTRRKVDWLTQ-KMQEKD 290 677788999**************973.556666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (400 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 559 (0.0376913); expected 296.6 (0.02) Passed bias filter: 445 (0.0300047); expected 296.6 (0.02) Passed Vit filter: 36 (0.00242735); expected 14.8 (0.001) Passed Fwd filter: 12 (0.000809116); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 12 [number of targets reported over threshold] # CPU time: 0.25u 0.27s 00:00:00.52 Elapsed: 00:00:00.52 # Mc/sec: 2007.95 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0184993556 [L=168] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-26 91.6 0.1 2.8e-26 91.1 0.0 1.3 1 Helicase_C Helicase conserved C-terminal domain Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.1 0.0 1.9e-30 2.8e-26 2 78 .] 30 106 .. 29 106 .. 0.97 Alignments for each domain: == domain 1 score: 91.1 bits; conditional E-value: 1.9e-30 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsv 64 l + g+k+ ++hg+ q+er+ le+f++g k+lvat+va+rG+d++++++V+nfd+ + Spumella-elongata-CCAP-955-1_CAMPEP_0184993556 30 SLCRMGVKCEAIHGDRDQRERDMALESFKSGHAKILVATDVAARGLDVKAITMVVNFDPANNA 92 57789********************************************************** PP HHHHHHHTTSSTTT CS Helicase_C 65 tsyiQriGRtgRag 78 ++y++riGRtgRag Spumella-elongata-CCAP-955-1_CAMPEP_0184993556 93 EDYVHRIGRTGRAG 106 ************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (168 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 660 (0.0445014); expected 296.6 (0.02) Passed bias filter: 584 (0.039377); expected 296.6 (0.02) Passed Vit filter: 31 (0.00209022); expected 14.8 (0.001) Passed Fwd filter: 1 (6.74263e-05); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.16u 0.25s 00:00:00.41 Elapsed: 00:00:00.47 # Mc/sec: 933.05 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0184985738 [L=592] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-33 116.0 0.0 9e-19 67.5 0.0 2.8 2 DEAD DEAD/DEAH box helicase 1.4e-18 66.4 1.3 4.6e-18 64.8 0.1 2.4 3 Helicase_C Helicase conserved C-terminal domain 1.3e-08 34.8 0.0 3.1e-08 33.6 0.0 1.6 1 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.013 15.6 0.0 11 6.1 0.0 3.2 3 AAA_22 AAA domain 0.049 13.3 0.0 0.16 11.7 0.0 1.9 1 AAA_19 Part of AAA domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.5 0.0 3e-22 9e-19 2 90 .. 27 125 .. 26 140 .. 0.89 2 ! 45.5 0.0 1.8e-15 5.5e-12 93 169 .] 163 281 .. 129 281 .. 0.78 Alignments for each domain: == domain 1 score: 67.5 bits; conditional E-value: 3e-22 HHHHHHHHHHHTT........CEEEEEESTTSSHHHHHHHHHHHHHHHTCTT...EEEEEESS CS xxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxx RF DEAD 2 piQaeaiplilgg........gdvlvaaeTGsGKTlaflipviqilletkdq...kalivaPt 53 p+Q +ip +l++ +d++v+a+TGsGKTl +++p++++ll d+ +ali++P+ Spumella-elongata-CCAP-955-1_CAMPEP_0184985738 27 PVQVDVIPKLLQQnanqciepQDICVSAPTGSGKTLSYAVPIVNTLLLD-DSprlRALILLPS 88 799999999997668999999***********************99885.33579******** PP HHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 54 reLaeqtlnnlkqfkkypklrvlliiggvalardqls 90 reLa+q+++ + ++++ ++l++++ +g+++ +++q+ Spumella-elongata-CCAP-955-1_CAMPEP_0184985738 89 RELANQVYEVFCKLTSGTSLKIAVATGQTDFEQEQRL 125 ******************************9866664 PP == domain 2 score: 45.5 bits; conditional E-value: 1.8e-15 TT.-SEEEEEHHHHHHHHHTTSSHCTT.EEEEEEETHHHHHSTTTHHHHHHHHHHSHHCT... CS xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx... RF DEAD 93 dngvdivvgTpgrlddlvstgklnlsq.vrllVlDEadrllsqgfsdqlnqilqilcdgk... 151 + vd+++ T grl+d+++ +k ++q +r+lVlDEadrll + + ++++++ ++ + Spumella-elongata-CCAP-955-1_CAMPEP_0184985738 163 KCSVDVLICTSGRLLDHLQLTKGFTLQyLRFLVLDEADRLLGNAYHGWVRSLVHSASETTqsl 225 3359****************99955566*******************9999888876666555 PP ...........T...........................SEEEEEESS-THHHHHH CS ...........x...........................xxxxxxxxxxxxxxxxx RF DEAD 152 ...........r...........................lqvivlSATlpkdvkkl 169 + lq +++SATl+++++kl Spumella-elongata-CCAP-955-1_CAMPEP_0184985738 226 skvsedsrplkKqrvdnplaapetvdsdlvhsylsvkppLQRLLFSATLTDNPSKL 281 566666655550556666666677777777788888888***********988875 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.0 1.3 3.9e+03 25 39 .. 126 171 .. 106 174 .. 0.45 2 ! 64.8 0.1 1.6e-21 4.6e-18 16 77 .. 460 521 .. 440 522 .. 0.91 3 ? -2.5 0.0 1.6 4.7e+03 3 31 .. 551 579 .. 549 584 .. 0.81 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 1.3 HHHHHHTTSS...............................SEEEE CS Helicase_C 25 ileqfnagks...............................kvlva 39 il f +ks +vl++ Spumella-elongata-CCAP-955-1_CAMPEP_0184985738 126 ILGAFAPQKSnhgsvraveekfsnrylysfsdssqsgkcsvDVLIC 171 4444444444444444444444444445333333344444455555 PP == domain 2 score: 64.8 bits; conditional E-value: 1.6e-21 TSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHHTTSSTT CS Helicase_C 16 elpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgRa 77 ++er++i++ ++g vlv+++ ++rGidlp++++Vin+d+p+ v +y++r+GRt+Ra Spumella-elongata-CCAP-955-1_CAMPEP_0184985738 460 TVRADERTRIMQGCQSGAVSVLVSSDHMARGIDLPNIRLVINYDPPKHVKTYVHRAGRTARA 521 67899********************************************************8 PP == domain 3 score: -2.5 bits; conditional E-value: 1.6 HHHTTS-EEEESTTSTHHHHHHHHHHHHT CS Helicase_C 3 lekkgikvailhgelpqnereeileqfna 31 l++ +++++i g++ ++ ++ i++ +++ Spumella-elongata-CCAP-955-1_CAMPEP_0184985738 551 LTQDQFNALIKKGSIRKSTQDGIMDVYKR 579 67888999999999999999999987765 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.6 0.0 1e-11 3.1e-08 4 103 .. 25 128 .. 23 222 .. 0.66 Alignments for each domain: == domain 1 score: 33.6 bits; conditional E-value: 1e-11 E-HHHHHHHHHHT........TTSEEEEEESTTSTHHHHHHHHHHHH-S.......-EEEEES CS ResIII 4 lrpyQeeaienllesieke.dekkrglivmaTGtGKTlvaasliarlar.......kflflvp 58 + p+Q +i +ll++ ++ e + +++ ++TG+GKTl +a i + + ++l+l p Spumella-elongata-CCAP-955-1_CAMPEP_0184985738 25 FFPVQVDVIPKLLQQNANQcIEPQDICVSAPTGSGKTLSYAVPIVNTLLlddsprlRALILLP 87 77999999999999988888899******************9777777779************ PP SHHHHHHHHHHG.................GGGTGG...GEEEESSS-B---SEEEEEHHHHH CS ResIII 59 rkelleqaleef.................kkfeskkiefekkniavakkdklfgeeqkkskd 103 ++el +q +e f + f++eq+ + Spumella-elongata-CCAP-955-1_CAMPEP_0184985738 88 SRELANQVYEVFckltsgtslkiavatgqT---------------------DFEQEQRLILG 128 ************444444444444444443.....................44444433333 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 0.0 0.0087 26 7 21 .. 50 64 .. 46 108 .. 0.94 2 ? 6.1 0.0 0.0038 11 87 103 .. 184 205 .. 147 227 .. 0.73 3 ? -0.1 0.0 0.3 9e+02 42 81 .. 346 385 .. 323 430 .. 0.84 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.0087 AAA_22 7 lvvtGesGvGKTtla 21 ++v++++G+GKT+++ Spumella-elongata-CCAP-955-1_CAMPEP_0184985738 50 ICVSAPTGSGKTLSY 64 6899*********97 PP == domain 2 score: 6.1 bits; conditional E-value: 0.0038 AAA_22 87 rv......glliiDEaqhLrsee 103 + ++l++DEa++L + Spumella-elongata-CCAP-955-1_CAMPEP_0184985738 184 KGftlqylRFLVLDEADRL-LGN 205 334455559*********7.433 PP == domain 3 score: -0.1 bits; conditional E-value: 0.3 AAA_22 42 fveapsstspkellkkllralglpakgrltteelleallr 81 +v + s+ p +l + +l+al + +g++t+++ +ea+++ Spumella-elongata-CCAP-955-1_CAMPEP_0184985738 346 RVICESEQRPITLVSLILEALSETSEGSATIADGTEAAEN 385 5778888899999999999999999997766666665554 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 5.2e-05 0.16 5 62 .. 43 99 .. 39 117 .. 0.77 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 5.2e-05 AAA_19 5 aalagnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraakrlserl 62 ++++++ ++v +++ G+GKT a i+ l +++ + + l++ p+++ a ++ e++ Spumella-elongata-CCAP-955-1_CAMPEP_0184985738 43 QCIEPQDICV-SAPTGSGKTLSYAVPIVNTLL-LDDSpRLRALILLPSRELANQVYEVF 99 4677889999.*********765555555553.67777999*********999998887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (592 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 414 (0.0279145); expected 296.6 (0.02) Passed bias filter: 354 (0.0238689); expected 296.6 (0.02) Passed Vit filter: 39 (0.00262963); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.31u 0.31s 00:00:00.62 Elapsed: 00:00:00.61 # Mc/sec: 2533.31 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0185012464 [L=1007] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-44 150.6 0.0 3.3e-43 147.1 0.0 2.1 2 DEAD DEAD/DEAH box helicase 2.7e-26 91.2 0.3 5.8e-26 90.1 0.2 1.6 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.33 9.9 0.1 0.56 9.2 0.0 1.2 1 CMS1 U3-containing 90S pre-ribosomal complex subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 147.1 0.0 6.6e-47 3.3e-43 1 168 [. 125 361 .. 125 362 .. 0.95 2 ? 1.1 0.0 0.049 2.4e+02 72 102 .. 436 469 .. 405 477 .. 0.79 Alignments for each domain: == domain 1 score: 147.1 bits; conditional E-value: 6.6e-47 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT.................. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq.................. 45 tpiQ++a+pl l g d++++a+TGsGKT f++pv+ ++ + d+ Spumella-elongata-CCAP-955-1_CAMPEP_0185012464 125 TPIQKHAVPLGLAGVDLMCCAQTGSGKTFSFMLPVVAAMDR--DSmvrvaaslppkevsassd 185 89***********************************9977..34579*************** PP ....................................................EEEEEESSHHH CS ....................................................xxxxxxxxxxx RF DEAD 46 ....................................................kalivaPtreL 56 a+++aPtreL Spumella-elongata-CCAP-955-1_CAMPEP_0185012464 186 gltdsgctpdegnslnpeqqqlsqksvevasnaaaafhfvervsigergalpLAVVLAPTREL 248 *************************************************************** PP HHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 57 aeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsq 119 a q++ +++++++ +l++++++gg++l+ ql+ l+ g+d++v+Tpgrl dlv +g +ls+ Spumella-elongata-CCAP-955-1_CAMPEP_0185012464 249 ASQIHLDARRLMHGSNLKAVCVYGGNDLR-TQLTELSTGCDLIVATPGRLNDLVDRGCVSLSS 310 ***************************88.******999*****************988**** PP EEEEEEETHHHHHSTTTHHHHHHHHHHSHHCT..TSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF DEAD 120 vrllVlDEadrllsqgfsdqlnqilqilcdgk..rlqvivlSATlpkdvkk 168 v llVlDEadr+l++gf++q+++i+q + + ++q+ ++SAT+p+++++ Spumella-elongata-CCAP-955-1_CAMPEP_0185012464 311 VTLLVLDEADRMLDMGFEPQIRRIIQENDMPPtgERQTFLFSATFPDEIQT 361 ***************************76665556***********88775 PP == domain 2 score: 1.1 bits; conditional E-value: 0.049 SCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 72 klrvlliiggvalardqlsvl....dngvdivvgT 102 ++++ i+g+ ++a+ ++ l d++++i+v+T Spumella-elongata-CCAP-955-1_CAMPEP_0185012464 436 HIKAEEIHGDRTQAQ-REHALrqfrDGQIRILVAT 469 578899999999774.444445889********99 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 90.1 0.2 1.2e-29 5.8e-26 5 78 .] 434 510 .. 431 510 .. 0.97 Alignments for each domain: == domain 1 score: 90.1 bits; conditional E-value: 1.2e-29 HTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHH. CS Helicase_C 5 kkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvts. 66 +++ik+ +hg+ +q +re+ l+qf++g+ ++lvat+va+rG+d+p+v++Vi+fdlp s ++ Spumella-elongata-CCAP-955-1_CAMPEP_0185012464 434 QCHIKAEEIHGDRTQAQREHALRQFRDGQIRILVATDVAARGLDVPAVTHVIQFDLPLSAEDf 496 789*****************************************************9999999 PP ..HHHHHTTSSTTT CS Helicase_C 67 ..yiQriGRtgRag 78 y++riGRtgRag Spumella-elongata-CCAP-955-1_CAMPEP_0185012464 497 dvYVHRIGRTGRAG 510 99**********97 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.2 0.0 0.00011 0.56 182 209 .. 291 318 .. 279 323 .. 0.91 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.00011 CMS1 182 vGtpgRiadLleeeslsvdeLkrivlDa 209 v tpgR+ dL++ +++s+++++ +vlD Spumella-elongata-CCAP-955-1_CAMPEP_0185012464 291 VATPGRLNDLVDRGCVSLSSVTLLVLDE 318 88************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1007 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 719 (0.0484795); expected 296.6 (0.02) Passed bias filter: 233 (0.0157103); expected 296.6 (0.02) Passed Vit filter: 43 (0.00289933); expected 14.8 (0.001) Passed Fwd filter: 14 (0.000943969); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.48 # Mc/sec: 5476.26 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0184970564 [L=988] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-35 121.1 3.4 2.3e-19 69.4 0.1 3.8 4 DEAD DEAD/DEAH box helicase 1.3e-22 79.3 0.1 4.4e-22 77.7 0.0 2.0 1 Helicase_C Helicase conserved C-terminal domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.1 0.37 2.8e+03 71 112 .. 126 166 .. 112 177 .. 0.60 2 ! 69.4 0.1 3.2e-23 2.3e-19 1 112 [. 221 343 .. 221 356 .. 0.76 3 ! 47.2 0.0 2.2e-16 1.7e-12 71 151 .. 368 454 .. 345 466 .. 0.80 4 ! 3.1 0.0 0.0075 56 128 164 .. 543 585 .. 541 590 .. 0.58 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 0.37 SSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 71 pklrvlliiggvalardqlsvldngvdivvgTpgrlddlvst 112 +++ ++ ++va a ++ ++ +++ + vv Tp d ++ Spumella-elongata-CCAP-955-1_CAMPEP_0184970564 126 SDIENAVTDSEVAPAAEK-KKKQKKGKSVVETPAIDTDSAEE 166 445556666677766344.44445688999999876666665 PP == domain 2 score: 69.4 bits; conditional E-value: 3.2e-23 -HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT.......EEEEEESSHH CS xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxx RF DEAD 1 tpiQaeaiplil.gggdvlvaaeTGsGKTlaflipviqilletkdq.......kalivaPtre 55 tpiQ++aipl+ gg+d+++aaeTGsGKTlaf++p+i+ ll++ ++ alivaPtre Spumella-elongata-CCAP-955-1_CAMPEP_0184970564 221 TPIQTSAIPLATmGGNDIVGAAETGSGKTLAFSLPIIHSLLHNWEScsnlripHALIVAPTRE 283 89*******999899*************************9984457**************** PP HHHHHHHHHHHHTTT.SSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEEHHHHHHHHHT CS xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxx RF DEAD 56 Laeqtlnnlkqfkky.pklrvlliiggvalardqlsvl....dngvdivvgTpgrlddlvst 112 La q+++ +++++ + +l + ++ + + + d ++d + p +s+ Spumella-elongata-CCAP-955-1_CAMPEP_0184970564 284 LALQIATVIREVCTKvGQLCEQYKTQAERAEAEAA--AvteaDTEADSTLAVPAEGAAKLSK 343 *************9854343333333333232222..1346766777777777665555555 PP == domain 3 score: 47.2 bits; conditional E-value: 2.2e-16 SSCCEEEETTTSEHHHHHHHHH...TT.-SEEEEEHHHHHHHHHT...TSS.HCTTEEEEEEE CS xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxxxxxx RF DEAD 71 pklrvlliiggvalardqlsvl...dngvdivvgTpgrlddlvst...gkl.nlsqvrllVlD 126 +++++ i+gg++++ +q+++l + v+ivv+Tpgrl ++++ + ++s++r+lV+D Spumella-elongata-CCAP-955-1_CAMPEP_0184970564 368 VSIEIVSIVGGMSEQ-KQRRQLagkGKPVHIVVATPGRLCEMFEDpenVSFqDMSKLRFLVVD 429 56788999*****55.888888898667****************977644447799******* PP THHHHHSTTTHHHHHHHHHHSHHCT CS xxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 127 Eadrllsqgfsdqlnqilqilcdgk 151 Eadr++++g +l+++ ++++d + Spumella-elongata-CCAP-955-1_CAMPEP_0184970564 430 EADRIMEEGHYAELHRVFSRIRDHE 454 ********99999999999988875 PP == domain 4 score: 3.1 bits; conditional E-value: 0.0075 HHHHHSTTTHHHHHHHHHHSHHCT......TSEEEEEESS-T.H CS xxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx.x RF DEAD 128 adrllsqgfsdqlnqilqilcdgk......rlqvivlSATlp.k 164 a+ + +++ ++ +++ + +k r+q++++SAT+ Spumella-elongata-CCAP-955-1_CAMPEP_0184970564 543 AHLIDDEENENAMEETEAV-AVKKpvfdvgRRQTLLFSATAIhA 585 5666666555555552222.12222344448*********9744 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.7 0.0 5.9e-26 4.4e-22 2 78 .] 717 793 .. 716 793 .. 0.98 Alignments for each domain: == domain 1 score: 77.7 bits; conditional E-value: 5.9e-26 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsv 64 ll++ gi++ +lh++l+q++r+ le+f + vlvat+va+rG+d+ +++ Vi++d+ rs+ Spumella-elongata-CCAP-955-1_CAMPEP_0184970564 717 LLRALGINCRALHAQLQQKQRLNALESFSDLPVGVLVATDVAARGLDISKIQSVIHYDVARSP 779 68999********************************************************** PP HHHHHHHTTSSTTT CS Helicase_C 65 tsyiQriGRtgRag 78 + y++r+GRt+Ra+ Spumella-elongata-CCAP-955-1_CAMPEP_0184970564 780 QVYVHRSGRTARAN 793 ************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (988 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1194 (0.080507); expected 296.6 (0.02) Passed bias filter: 307 (0.0206999); expected 296.6 (0.02) Passed Vit filter: 35 (0.00235992); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.88 # Mc/sec: 2930.69 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0185014198 [L=925] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-44 149.7 0.0 2.9e-21 76.0 0.1 2.8 2 Ribonuclease_3 Ribonuclease III domain 3.9e-27 94.7 2.5 7.8e-17 61.4 0.9 4.4 3 Ribonucleas_3_3 Ribonuclease-III-like Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.7 0.0 1.7e-23 1.3e-19 1 114 [] 457 596 .. 457 596 .. 0.82 2 ! 76.0 0.1 3.9e-25 2.9e-21 1 114 [] 787 905 .. 787 905 .. 0.81 Alignments for each domain: == domain 1 score: 70.7 bits; conditional E-value: 1.7e-23 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBHHHHH CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylresefd 63 erLe+LGDa+lk++i+ lf+ +p+++eg+l+ rs +++n+ l+++a + g +ylr+ + Spumella-elongata-CCAP-955-1_CAMPEP_0185014198 457 ERLETLGDAFLKYIISVELFRMFPEMREGRLTSTRSIYINNRKLCKVAFSSGVVPYLRA---Q 516 8*********************************************************5...6 PP HSTT--T.................SSSSS.SC............................... CS Ribonuclease_3 64 ppknwlp.................lnkdlangk...................grqsisydlke 90 p ++++ + + +++k+ Spumella-elongata-CCAP-955-1_CAMPEP_0185014198 517 PLSRGEKvvsicppgmceavhleeR-------SiwgvdvirrpverkyyqdaMFIYPVRQHKQ 572 7777777777888888844444440.......3566666666666666665555555555559 PP ...TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 91 qsiadkvladvvEAliGaiyldsg 114 + + k +d+vE++iG++y+d+g Spumella-elongata-CCAP-955-1_CAMPEP_0185014198 573 HMVMYKKCSDMVESIIGVYYIDGG 596 9999******************87 PP == domain 2 score: 76.0 bits; conditional E-value: 3.9e-25 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBHHHHH CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylresefd 63 erLefLGDavl++++++y f++++ + + +l++ +sk +n+nla a lgl+++l+++++ Spumella-elongata-CCAP-955-1_CAMPEP_0185014198 787 ERLEFLGDAVLDFVVVSYWFKQNSAYEPCQLHDVKSKNSCNRNLASKAYTLGLHRFLQHKSEG 849 8********************99999********************************87777 PP HSTT--T.......SSSSS.SC....................TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 64 ppknwlp.......lnkdlangk....grqsisydlk.eqsiadkvladvvEAliGaiyldsg 114 ++ + + +n ++a++k g+ + kvlad++EA+iGaiyldsg Spumella-elongata-CCAP-955-1_CAMPEP_0185014198 850 LQAQLAEychehaaFNGGQAERKlngqGK-------EaVMETTSKVLADTFEAIIGAIYLDSG 905 76666669866666444444333322222.......12456678*****************98 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 0.0 2.3e-08 0.00017 18 80 .. 452 515 .. 438 536 .. 0.81 2 ! 4.6 0.0 0.004 29 96 115 .. 580 599 .. 559 609 .. 0.81 3 ! 61.4 0.9 1.1e-20 7.8e-17 1 114 [. 767 907 .. 767 918 .. 0.78 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 2.3e-08 Ribonucleas_3_3 18 rkgyNerLefLGdavLelvvseyllek.akkdegeltkklaslvseeslaeiakelgLgkvlr 79 +k erLe LGda L+ ++s l++ ++++eg+lt++++ +++++l ++a g +lr Spumella-elongata-CCAP-955-1_CAMPEP_0185014198 452 EKIDSERLETLGDAFLKYIISVELFRMfPEMREGRLTSTRSIYINNRKLCKVAFSSGVVPYLR 514 35567********************99456689*******9999*********9999988888 PP Ribonucleas_3_3 80 l 80 Spumella-elongata-CCAP-955-1_CAMPEP_0185014198 515 A 515 7 PP == domain 2 score: 4.6 bits; conditional E-value: 0.004 Ribonucleas_3_3 96 ladaleAliGAiyldkGaee 115 ++d++e++iG y+d+G ++ Spumella-elongata-CCAP-955-1_CAMPEP_0185014198 580 CSDMVESIIGVYYIDGGEAA 599 68*************99654 PP == domain 3 score: 61.4 bits; conditional E-value: 1.1e-20 Ribonucleas_3_3 1 deelllqaltHkSyangrkgyNerLefLGdavLelvvseyllekakk.degeltkklaslvse 62 d++ll altH S++ r+ + erLefLGdavL++vv+ y +++ + + +l +++ ++ Spumella-elongata-CCAP-955-1_CAMPEP_0185014198 767 DRNLLRLALTHTSMS--RQVNGERLEFLGDAVLDFVVVSYWFKQNSAyEPCQLHDVKSKNSCN 827 679**********99..67899*******************9997762456777777889999 PP Ribonucleas_3_3 63 eslaeiakelgLgkvlrl.....................rkgeeetessgrek.......vla 97 ++la a +lgL ++l+ ++ e++++++g+e vla Spumella-elongata-CCAP-955-1_CAMPEP_0185014198 828 RNLASKAYTLGLHRFLQHkseglqaqlaeychehaafngGQAERKLNGQGKEAvmettskVLA 890 9**********7777777777777777777777888888555555555555333333445*** PP Ribonucleas_3_3 98 daleAliGAiyldkGae 114 d++eA+iGAiyld+G + Spumella-elongata-CCAP-955-1_CAMPEP_0185014198 891 DTFEAIIGAIYLDSGED 907 **************964 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (925 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 372 (0.0250826); expected 296.6 (0.02) Passed bias filter: 290 (0.0195536); expected 296.6 (0.02) Passed Vit filter: 27 (0.00182051); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.36u 0.42s 00:00:00.78 Elapsed: 00:00:01.34 # Mc/sec: 1801.91 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0184984986 [L=672] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-46 158.3 0.0 5.9e-46 156.0 0.0 1.9 2 DEAD DEAD/DEAH box helicase 3.6e-27 94.0 0.0 9.9e-27 92.6 0.0 1.8 1 Helicase_C Helicase conserved C-terminal domain 0.0047 16.7 0.0 0.0075 16.1 0.0 1.2 1 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.042 12.6 0.0 0.06 12.1 0.0 1.1 1 SNF2_N SNF2 family N-terminal domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 156.0 0.0 1.6e-49 5.9e-46 1 168 [. 218 398 .. 218 399 .. 0.95 2 ? -0.5 0.0 0.2 7.5e+02 67 102 .. 466 504 .. 451 522 .. 0.76 Alignments for each domain: == domain 1 score: 156.0 bits; conditional E-value: 1.6e-49 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT.............EEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.............xxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq.............kali 49 tp+Q+ +ip l+ggd++++a+TGsGKT+ fl p+i +l+t + al+ Spumella-elongata-CCAP-955-1_CAMPEP_0184984986 218 TPVQKYSIPIGLSGGDMMACAQTGSGKTAGFLFPLIAVMLRTgATPipegtnrgrgayiSALV 280 79*************************************9995544***************** PP EESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 50 vaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvst 112 +aPtreLa q+++++++f+ +++r ++++gg +++ q++ ld g+di+v+Tpgrl dl+++ Spumella-elongata-CCAP-955-1_CAMPEP_0184984986 281 LAPTRELAVQIYDEANKFCYCTGIRPVVVYGGANIQ-MQQKELDAGADILVATPGRLGDLIER 342 *******************99*************99.999999999***************** PP TSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 113 gklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 g+ +l v++lVlDEadr+l++gf++q+++i+q ++q+ ++SAT+p ++++ Spumella-elongata-CCAP-955-1_CAMPEP_0184984986 343 GRVKLDIVKFLVLDEADRMLDMGFEPQIRRIVQEEGMSIDRQTFMFSATFPVEIQR 398 *99******************************9655558**********977665 PP == domain 2 score: -0.5 bits; conditional E-value: 0.2 HTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 67 fkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 ++ ++ + i+g+++++ +++ l +++ i+v+T Spumella-elongata-CCAP-955-1_CAMPEP_0184984986 466 VLMRNNFPASSIHGDKSQR-EREDALkwfkTGRTPILVAT 504 4444556788899999944.555555577999999**999 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 92.6 0.0 2.7e-30 9.9e-27 3 78 .] 467 542 .. 465 542 .. 0.97 Alignments for each domain: == domain 1 score: 92.6 bits; conditional E-value: 2.7e-30 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHH CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvt 65 l ++++++ +hg+ +q+ere+ l+ f++g++++lvat+va+rG+d+p+v+ Vinfdlp + + Spumella-elongata-CCAP-955-1_CAMPEP_0184984986 467 LMRNNFPASSIHGDKSQREREDALKWFKTGRTPILVATDVAARGLDIPNVTQVINFDLPSNID 529 678899********************************************************* PP HHHHHHTTSSTTT CS Helicase_C 66 syiQriGRtgRag 78 +y++riGRtgR+g Spumella-elongata-CCAP-955-1_CAMPEP_0184984986 530 DYVHRIGRTGRVG 542 ***********86 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.1 0.0 2e-06 0.0075 32 182 .. 238 392 .. 232 394 .. 0.82 Alignments for each domain: == domain 1 score: 16.1 bits; conditional E-value: 2e-06 ESTTSTHHHHHH.HHHHHH-S..................-EEEEESSHHHHHHHHHHGGGGTG CS ResIII 32 maTGtGKTlvaa.sliarlar..................kflflvprkelleqaleefkkfes 75 + TG+GKT + lia ++r +l+l+p++el q ++e + Spumella-elongata-CCAP-955-1_CAMPEP_0184984986 238 AQTGSGKTAGFLfPLIAVMLRtgatpipegtnrgrgayiSALVLAPTRELAVQIYDEA----N 296 67******9877434444444555999999999************************9....9 PP G...GEEEESSS-B---SEEEEEHHHHH..................................H CS ResIII 76 kkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskse 138 k++ ++ ++v + +++++ +qk+++ ++i+++t +l +e+ Spumella-elongata-CCAP-955-1_CAMPEP_0184984986 297 KFCYCTGIRPVVVYGGANIQMQQKELDA-------GADILVATPGRLGDLIER---------- 342 9999999999999999998888888888.......8999********999876.......... PP THHHHTTT-SEEEEETGGGTTSTT....THHHHH....---SEEEEEESS- CS ResIII 139 slealldefdviiiDEaHrlsakkk...yreile....fkkafllglTATp 182 + +ld ++++ DEa r+ ++ r+i++ + + ++AT+ Spumella-elongata-CCAP-955-1_CAMPEP_0184984986 343 -GRVKLDIVKFLVLDEADRMLDMGFepqIRRIVQeegmSIDRQTFMFSATF 392 .34556666799999999999999877766666688886667779999997 PP >> SNF2_N SNF2 family N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 1.6e-05 0.06 28 146 .. 234 361 .. 191 381 .. 0.78 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 1.6e-05 EEE---TTSSCCHHHHH.HHHHHCCCHS-...............EEEE--T.TTHHHHHHHHH CS xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx..........xxxxxxx.xxxxxxxxxxx RF SNF2_N 28 giLaDemGlGKTvqvia.lilllkeeaerkkkks..........tLivvPs.slldqWvneie 78 ++ + +G GKT + li+++ + +++ L+++P+ +l+ q ++e + Spumella-elongata-CCAP-955-1_CAMPEP_0184984986 234 MMACAQTGSGKTAGFLFpLIAVMLRTGATPIPEGtnrgrgayisALVLAPTrELAVQIYDEAN 296 55677788888887765245533333333333335666677788*******9*********** PP HCS.T.T-.-EEE--HCCCHHHTT-SSSTT-SEEEE-CCHHH..TSTCTCHHHHTSEEEEEEE CS xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SNF2_N 79 rhvspsal.rvlvyggqkkakksaaklladydvvittydvlralrekkrksvlkkvkwkrvvl 140 +++ + v+vygg + + ++++l a +d+++ t +l ++ ++k +k++vl Spumella-elongata-CCAP-955-1_CAMPEP_0184984986 297 KFCYCTGIrPVVVYGGAN-IQMQQKELDAGADILVATPGRLG---DLIERGRVKLDIVKFLVL 355 ***988885677777777.999999****************9...333334444334899*** PP TTCCGG CS xxxxxx RF SNF2_N 141 DEahrl 146 DEa r+ Spumella-elongata-CCAP-955-1_CAMPEP_0184984986 356 DEADRM 361 **9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (672 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 442 (0.0298024); expected 296.6 (0.02) Passed bias filter: 335 (0.0225878); expected 296.6 (0.02) Passed Vit filter: 46 (0.00310161); expected 14.8 (0.001) Passed Fwd filter: 12 (0.000809116); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.38u 0.39s 00:00:00.77 Elapsed: 00:00:01.42 # Mc/sec: 1235.31 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0184998474 [L=126] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.1e-12 45.8 0.0 5.1e-12 45.4 0.0 1.3 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.032 14.1 0.0 0.07 13.0 0.0 1.6 1 Helicase_C_2 Helicase C-terminal domain Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.4 0.0 6.9e-16 5.1e-12 16 74 .. 54 112 .. 27 115 .. 0.91 Alignments for each domain: == domain 1 score: 45.4 bits; conditional E-value: 6.9e-16 TSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHHTTS CS Helicase_C 16 elpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRt 74 ++ +++e++l +f++g++k +v+t v+e+G+d++++n+Vi ++ + + +Q GR+ Spumella-elongata-CCAP-955-1_CAMPEP_0184998474 54 GMLWKQQERVLVDFHRGDCKLVVCTTVLEEGLDVKGCNLVIRLGGAPTLIQVVQSKGRA 112 566689****************************************************4 PP >> Helicase_C_2 Helicase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 0.0 9.5e-06 0.07 11 82 .. 16 92 .. 6 118 .. 0.80 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 9.5e-06 Helicase_C_2 11 gvlvffpSyslleevverlkeeleskki.evfee....k..eesrekvleeykeskgaillavcr 68 +lvf+ ++v+++l++++ + + +v+ + + +++e+vl ++++++ ++++++ Spumella-elongata-CCAP-955-1_CAMPEP_0184998474 16 CTLVFVETRYCANTVMSFLQSKYPELNCkHVVGQggddGmlWKQQERVLVDFHRGDCKLVVCTT- 79 589999999************9977776245555666523467888888888888888888887. PP Helicase_C_2 69 gkvseGidfsddll 82 + eG+d+++ +l Spumella-elongata-CCAP-955-1_CAMPEP_0184998474 80 -VLEEGLDVKGCNL 92 .*********8765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (126 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 319 (0.021509); expected 296.6 (0.02) Passed bias filter: 300 (0.0202279); expected 296.6 (0.02) Passed Vit filter: 11 (0.00074169); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.18u 0.36s 00:00:00.54 Elapsed: 00:00:01.10 # Mc/sec: 299.00 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0185013058 [L=577] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-28 99.2 0.1 6.3e-28 97.3 0.0 2.0 2 DEAD DEAD/DEAH box helicase 6.4e-24 83.6 0.0 1.2e-23 82.7 0.0 1.5 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 5.2 6.8 11.4 8.5 6.2 1.0 2.8 2 YTV YTV Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.0 0.56 2.8e+03 125 131 .. 139 145 .. 82 155 .. 0.57 2 ! 97.3 0.0 1.3e-31 6.3e-28 2 164 .. 184 343 .. 183 347 .. 0.81 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 0.56 EETHHHH CS xxxxxxx RF DEAD 125 lDEadrl 131 lDE +++ Spumella-elongata-CCAP-955-1_CAMPEP_0185013058 139 LDELHKI 145 3444444 PP == domain 2 score: 97.3 bits; conditional E-value: 1.3e-31 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtlnn 63 +iQa+++plil+g++v+++a+ G+GKT+af+i ++ ++ + + +al+++PtreLa+q+l++ Spumella-elongata-CCAP-955-1_CAMPEP_0185013058 184 EIQASTLPLILDGHNVIAQAQSGAGKTIAFVIGMLAKINLSqHRPQALCLTPTRELANQILSD 246 79*********************************9998876777****************** PP HHHHTTTSSCCEEEETTTSEHHHHH.HHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 64 lkqfkkypklrvlliiggvalardq.lsvldngvdivvgTpgrlddlvstgklnlsqvrllVl 125 + + ++ r + +++ r+ + +++ +++vgTpg+++ v +g l+ +++++Vl Spumella-elongata-CCAP-955-1_CAMPEP_0185013058 247 AVRPLSS---RLKVTYEDALPGREVaAGDICR-SQVIVGTPGTVKRWVTKGYLDPASINIFVL 305 *999988...4444444443332220333365.9*****************9999******** PP ETHHHHHST.TTHHHHHHHHHHSHHCTTSEEEEEESS-TH CS xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 126 DEadrllsq.gfsdqlnqilqilcdgkrlqvivlSATlpk 164 DEad++ ++ + + i ++l ++q++++SAT +k Spumella-elongata-CCAP-955-1_CAMPEP_0185013058 306 DEADKMVEEkALGADTIAIRKKL--HPSVQILFFSATYSK 343 ********634444555555555..446*********985 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 82.7 0.0 2.3e-27 1.2e-23 5 78 .] 421 503 .. 417 503 .. 0.93 Alignments for each domain: == domain 1 score: 82.7 bits; conditional E-value: 2.3e-27 HTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSS....... CS Helicase_C 5 kkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl....... 60 + g++v +lhg+l ++er++++++f+ag++kvl++tnv++rG+d+p+v vV+n+dl Spumella-elongata-CCAP-955-1_CAMPEP_0185013058 421 ESGFEVSVLHGDLLPEERDKVMDDFRAGRTKVLITTNVLARGVDVPAVAVVVNYDLpvqrigt 483 7899****************************************************8888888 PP ..SSSHHHHHHHHTTSSTTT CS Helicase_C 61 ..prsvtsyiQriGRtgRag 78 + + ++y++riGR+gR+g Spumella-elongata-CCAP-955-1_CAMPEP_0185013058 484 niSADEATYLHRIGRCGRFG 503 88888888**********97 PP >> YTV YTV # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 1.0 0.0017 8.5 4 15 .. 81 92 .. 72 95 .. 0.71 2 ? 4.6 1.9 0.0052 26 4 15 .. 113 124 .. 112 127 .. 0.61 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0017 YTV 4 VqvPVtetkekt 15 V vPVtet+ek Spumella-elongata-CCAP-955-1_CAMPEP_0185013058 81 VEVPVTETVEKV 92 556666666655 PP == domain 2 score: 4.6 bits; conditional E-value: 0.0052 YTV 4 VqvPVtetkekt 15 V vPVtet+ek Spumella-elongata-CCAP-955-1_CAMPEP_0185013058 113 VEVPVTETVEKV 124 556666666665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (577 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 576 (0.0388376); expected 296.6 (0.02) Passed bias filter: 356 (0.0240038); expected 296.6 (0.02) Passed Vit filter: 48 (0.00323646); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.29u 0.41s 00:00:00.70 Elapsed: 00:00:01.96 # Mc/sec: 768.45 // Query: Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 [L=497] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-47 160.1 0.1 8.8e-47 158.7 0.0 1.7 2 DEAD DEAD/DEAH box helicase 1.4e-26 92.1 0.0 3e-26 91.0 0.0 1.6 1 Helicase_C Helicase conserved C-terminal domain 0.0011 18.7 0.0 0.005 16.7 0.0 2.1 2 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.036 13.7 0.0 0.092 12.4 0.0 1.7 1 AcylCoA_DH_N Acyl-CoA dehydrogenase N terminal 0.037 12.8 0.0 0.06 12.1 0.0 1.2 1 SNF2_N SNF2 family N-terminal domain 0.047 12.0 0.0 0.075 11.4 0.0 1.3 1 DUF1253 Protein of unknown function (DUF1253) 0.089 12.5 0.0 0.28 10.9 0.0 1.9 1 Flavi_DEAD Flavivirus DEAD domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 158.7 0.0 4.1e-50 8.8e-47 1 169 [] 67 234 .. 67 234 .. 0.96 2 ? -2.2 0.0 1.1 2.4e+03 69 102 .. 303 339 .. 277 341 .. 0.70 Alignments for each domain: == domain 1 score: 158.7 bits; conditional E-value: 4.1e-50 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtln 62 t+iQ+++ip++l+g+dv++ aeTGsGKT+af+ip++q+ll+ ++ a+++aPtreLa q+ + Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 67 TEIQRNSIPEALKGRDVIGLAETGSGKTGAFAIPILQALLSApQRLFAVVLAPTRELAFQINE 129 79***************************************98877***************** PP HHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSS.HCTTEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF DEAD 63 nlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkl.nlsqvrllV 124 ++ ++ l+ ++i+gg ++ q+ l ++++++v+Tpgrl+d+++++k nl ++++lV Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 130 VFEALGASIALNSVCIVGGIDMV-TQAIALAKKPHVIVATPGRLVDHLQNTKGfNLRNLKYLV 191 ********99***********88.899899888*****************9999********* PP EETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 125 lDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkkl 169 +DEadr+ls++f++++n+il + + +++++++SAT++++v+kl Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 192 MDEADRMLSMDFEEEINKILAVIPR--ERRTCLFSATMTSKVAKL 234 **********************955..599*********999875 PP == domain 2 score: -2.2 bits; conditional E-value: 1.1 TTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 69 kypklrvlliiggvalardqlsvl....dngvdivvgT 102 ++++++++++g+ ++a ++l l ++ +i+v+T Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 303 RNLGFEAVCLHGQLSQA-KRLGALnkfkAGQRNILVAT 339 34567778888888866.66666667777777888877 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.0 0.0 1.4e-29 3e-26 2 78 .] 301 377 .. 300 377 .. 0.98 Alignments for each domain: == domain 1 score: 91.0 bits; conditional E-value: 1.4e-29 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsv 64 ll++ g+++++lhg+l+q +r+ l++f+ag++++lvat+va+rG+d+p+v++V nfd+p Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 301 LLRNLGFEAVCLHGQLSQAKRLGALNKFKAGQRNILVATDVASRGLDIPNVDMVLNFDIPSHG 363 799************************************************************ PP HHHHHHHTTSSTTT CS Helicase_C 65 tsyiQriGRtgRag 78 +yi+r+GRt+Rag Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 364 KDYIHRVGRTARAG 377 ************97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.1 2.8 5.9e+03 87 119 .. 13 45 .. 4 50 .. 0.60 2 ! 16.7 0.0 2.3e-06 0.005 32 181 .. 87 226 .. 72 229 .. 0.76 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 2.8 S-B---SEEEEEHHHHH................ CS ResIII 87 vakkdklfgeeqkkskdkeekkkkdkeiiltti 119 + kkdk + e+++ e ++++++e++l t Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 13 GSKKDKSAKVEKAETVAAEVENNETCEVVLDTF 45 445566666666666666666677777766555 PP == domain 2 score: 16.7 bits; conditional E-value: 2.3e-06 ESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG...GEEEESSS- CS ResIII 32 maTGtGKTlvaasliarlar......kflflvprkelleqaleefkkfeskkiefekkniava 88 ++TG+GKT a i++ + +++l+p++el q e f + ++i++ Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 87 AETGSGKTGAFAIPILQALLsapqrlFAVVLAPTRELAFQINEVF-EALGASIAL-------- 140 57*******99975555555599999999****************.222222222........ PP B---SEEEEEHHHHH..................................HTHHHHTTT-SEEE CS ResIII 89 kkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdvii 151 +++ + + ++ + +k+ +i++t +l l++ ++ ++l ++++ Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 141 --NSVCIVGGIDMVTQAIALAKKPHVIVATPGRLVDHLQN----------TKGFNLRNLKYLV 191 ..3445555666666666667889999*******999885..........6788888899*** PP EETGGGTTSTT.THHHHH.....---SEEEEEESS CS ResIII 152 iDEaHrlsakkkyreile.....fkkafllglTAT 181 +DEa r+ +++ +ei++ ++ ++AT Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 192 MDEADRMLSMDFEEEINKilaviPRERRTCLFSAT 226 *******9999988888877777444455667777 PP >> AcylCoA_DH_N Acyl-CoA dehydrogenase N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 4.3e-05 0.092 4 20 .. 117 133 .. 114 133 .. 0.90 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 4.3e-05 AcylCoA_DH_N 4 kAPlRDmrFvLyEvlda 20 +AP R++ F+++Ev++a Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 117 LAPTRELAFQINEVFEA 133 8**************86 PP >> SNF2_N SNF2 family N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 2.8e-05 0.06 5 171 .. 60 226 .. 58 278 .. 0.74 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 2.8e-05 HHHHHHHCC.........TTT-EEEE---TTSSCCHH.HHHHHHHHCCCHS-.....EEEE-- CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF SNF2_N 5 avawmlkrelaaesapaeqsvrggiLaDemGlGKTvq.vialilllkeeaerkkkkstLivvP 66 +v w + e+ ++s p+ + r +i e+G GKT +i ++ +l + +r ++++P Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 60 GVGWTAPTEIQRNSIPEALKGRDVIGLAETGSGKTGAfAIPILQALLSAPQRLF---AVVLAP 119 677777888888888888888899988999999997624555556666555543...899999 PP T.TTHHHHHHHHHHCS.T.T-.-EEE--HCCCHHHTT-SSSTT-SEEEE-CCHHH..TSTCTC CS x.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SNF2_N 67 s.slldqWvneierhvspsal.rvlvyggqkkakksaaklladydvvittydvlralrekkrk 127 + +l+ q + +e ++ al v+++gg +++a +l+++ +v++ t +l + +++ Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 120 TrELAFQINEVFEALGASIALnSVCIVGG-IDMVTQAIALAKKPHVIVATPGRLV--DHLQNT 179 97777777777888888889945555555.559999999****************..777788 PP HHHHTSEEEEEEETTCCGG.TTCSSHHHHHHCC.CCECCEEEC.-SS CS xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.xxxxxxxxx.xxx RF SNF2_N 128 svlkkvkwkrvvlDEahrl.knstskaaeallk.lstknrwil.tGT 171 + ++ ++ k++v+DEa r+ + + +++l+ + ++r +l ++T Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 180 KGFNLRNLKYLVMDEADRMlSMDFEEEINKILAvIPRERRTCLfSAT 226 8888899*********9885777777778888756688888873444 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 3.5e-05 0.075 293 427 .. 275 404 .. 206 409 .. 0.78 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 3.5e-05 DUF1253 293 kltkeskekgvlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkgrkkiLL 355 l e k + v+if+++ + +r++ +l++ ++ + ++ s++k a + Fk g+++iL+ Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 275 YLLDEFKGQSVIIFVATCNNALRVTLLLRNLGFEAVCLHGQLSQAKRLGALNKFKAGQRNILV 337 4444556899**************99998777777777778888888889************* PP DUF1253 356 vteRlhfyrRykikgvkkvifyslPefpefYselikllakskkeeaeeaeasvivlyskydal 418 t+ + r i +v v+ + +P++ + Y + a+ + +++s ++ y + Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 338 ATDVAS--RGLDIPNVDMVLNFDIPSHGKDYIHRVGRTARAG---KSGRSVSFVTQYDVEAYQ 395 **9875..899****************988877764444444...478889999999999999 PP DUF1253 419 eLerivGte 427 +Le+++G++ Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 396 RLEALIGQK 404 9*****997 PP >> Flavi_DEAD Flavivirus DEAD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.0 0.00013 0.28 13 59 .. 89 137 .. 78 199 .. 0.77 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.00013 TTS-TTTTHHHHHHHHHHH..TT--EEEEESSHHHHHHHHHHTTTS-EE CS Flavi_DEAD 13 PGaGktrkvlpelvkeaie..rrlrtlvLaPtrvvlaemeealkglevr 59 G+Gkt + ++++ ++ +rl ++vLaPtr + ++e +++l + Spumella-elongata-CCAP-955-1_CAMPEP_0184967636 89 TGSGKTGAFAIPILQALLSapQRLFAVVLAPTRELAFQINEVFEALGAS 137 699***9999999988654227899********9887776666655444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (497 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 541 (0.0364776); expected 296.6 (0.02) Passed bias filter: 409 (0.0275774); expected 296.6 (0.02) Passed Vit filter: 20 (0.00134853); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.29u 0.43s 00:00:00.72 Elapsed: 00:00:02.20 # Mc/sec: 589.70 // Query: Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 [L=410] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-41 140.9 0.2 4.7e-41 140.1 0.1 1.4 1 DEAD DEAD/DEAH box helicase 5.4e-27 93.4 0.6 1.9e-26 91.7 0.4 1.9 2 Helicase_C Helicase conserved C-terminal domain 0.0006 19.6 0.1 0.001 18.9 0.1 1.5 1 ResIII Type III restriction enzyme, res subunit 0.002 17.8 2.1 0.0025 17.5 0.2 2.1 3 AAA_19 Part of AAA domain 0.0057 16.2 0.1 0.029 13.9 0.1 2.1 2 AAA_30 AAA domain 0.0075 14.7 0.1 1.7 6.9 0.0 2.3 2 DUF1253 Protein of unknown function (DUF1253) ------ inclusion threshold ------ 0.057 13.0 0.0 0.093 12.3 0.0 1.3 1 Helicase_RecD Helicase Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 140.1 0.1 2.2e-44 4.7e-41 2 164 .. 62 223 .. 61 227 .. 0.94 Alignments for each domain: == domain 1 score: 140.1 bits; conditional E-value: 2.2e-44 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHHHHHHHTT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtlnnlkqfkk 69 +iQ++a++ il +dv+++a+ G+GKT+ f+i ++q+l + ++ +al++aPtreLa+q+++ ++ +++ Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 62 AIQQRAVKPILLSRDVIAQAQSGTGKTATFAIGILQKLDVSlRECQALVLAPTRELAQQIVKVITALGD 130 69*********99*************************9999999************************ PP TSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHHHHSTTTHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 70 ypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsd 138 ++++v++++gg+a++ d+ + l++gv++vvgTpgr+ d+++++ l+ +++l+VlDEad++ls gf++ Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 131 FMQIKVHACVGGTAIR-DDIRTLQDGVHVVVGTPGRVSDMIRRRALRPDSIGLFVLDEADEMLSRGFKE 198 **************88.999999888*****************9999999******************* PP HHHHHHHHSHHCTTSEEEEEESS-T.H CS xxxxxxxxxxxxxxxxxxxxxxxxx.x RF DEAD 139 qlnqilqilcdgkrlqvivlSATlp.k 164 q++++ + + + +q+ ++SAT+p + Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 199 QIYEVFKFMPET--VQCAIFSATMPlE 223 ********9555..**********944 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 1.5 3.1e+03 12 38 .. 214 240 .. 208 243 .. 0.78 2 ! 91.7 0.4 9e-30 1.9e-26 6 78 .] 299 371 .. 294 371 .. 0.95 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 1.5 EESTTSTHHHHHHHHHHHHTTSSSEEE CS Helicase_C 12 ilhgelpqnereeileqfnagkskvlv 38 ++ + +++ e +e+ ++f ++ ++lv Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 214 AIFSATMPLEVLEVTSKFMRDPVRILV 240 445557888889999999999999987 PP == domain 2 score: 91.7 bits; conditional E-value: 9e-30 TTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHHTTS CS Helicase_C 6 kgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRt 74 +++ + +hg++ q+er+ i+++f++g+s+vl++t+ ++rGid+++v++Vin+dlp+++++yi+riGR Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 299 RDFTTSSMHGDMDQRERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRS 367 6778999************************************************************** PP STTT CS Helicase_C 75 gRag 78 gR+g Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 368 GRFG 371 **87 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.9 0.1 4.8e-07 0.001 8 70 .. 64 125 .. 58 220 .. 0.81 Alignments for each domain: == domain 1 score: 18.9 bits; conditional E-value: 4.8e-07 HHHHHHHHT.......TTSEEEEEESTTSTHHHHHH.....HHHHHH-S......-EEEEESSHHHHHH CS ResIII 8 QeeaienllesiekedekkrglivmaTGtGKTlvaa.....sliarlar......kflflvprkelleq 65 Q++a++ +l + ++ ++ GtGKT + a +l ++l+l+p++el +q Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 64 QQRAVKPILL-------SRDVIAQAQSGTGKTATFAigilqKL-----DvslrecQALVLAPTRELAQQ 120 5566666652.......456789999**********5444444.....345556*************** PP HHHHG CS ResIII 66 aleef 70 + + Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 121 IVKVI 125 99877 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 0.2 1.2e-06 0.0025 9 62 .. 74 125 .. 66 153 .. 0.79 2 ? -2.1 0.0 1.5 3.2e+03 6 20 .. 151 164 .. 143 165 .. 0.73 3 ? -3.0 0.0 2.9 6.2e+03 26 55 .. 275 289 .. 272 307 .. 0.56 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 1.2e-06 AAA_19 9 gnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraakrlserl 62 + +++ ++ GtGKT+t a +i + l+ + l++apt++ a+++ +++ Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 74 SRDVIA-QAQSGTGKTATFAIGILQKLD--VSLrECQALVLAPTRELAQQIVKVI 125 477888.********************3..23336679*************8887 PP == domain 2 score: -2.1 bits; conditional E-value: 1.5 AAA_19 6 alagnpllvvtGgPG 20 +l+ +++ vv G PG Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 151 TLQ-DGVHVVVGTPG 164 445.8999999*999 PP == domain 3 score: -3.0 bits; conditional E-value: 2.9 AAA_19 26 tlaaiiaallaarekpgrsvllvaptgraa 55 t++ +i ++ t+r + Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 275 TITQAIIYCN---------------TRRKV 289 5555555554...............44444 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.9 0.1 1.4e-05 0.029 4 65 .. 62 124 .. 60 203 .. 0.63 2 ? -1.4 0.0 0.68 1.4e+03 49 84 .. 279 314 .. 265 330 .. 0.85 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.4e-05 AAA_30 4 aeQkeaveavltsgdrvavvqGpAGtGKttvlka..lrealea.agkrviglAptgkaakvLeee 65 a Q++av+ +l s+d ++ q+ GtGKt + + l+++ + ++ + ++lApt + a+++ + Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 62 AIQQRAVKPILLSRD--VIAQAQSGTGKTATFAIgiLQKLDVSlRECQALVLAPTRELAQQIVKV 124 569***********8..88999******9876543255543332568999999999999998776 PP == domain 2 score: -1.4 bits; conditional E-value: 0.68 AAA_30 49 viglAptgkaakvLeeelgiearTiasllerldkae 84 i++ t + ++ L+e++g++ T +s+ ++ d++e Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 279 AIIYCNTRRKVDWLTEQMGARDFTTSSMHGDMDQRE 314 567788999999999999999999999999888865 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.9 0.0 0.00079 1.7 30 60 .. 98 128 .. 74 137 .. 0.84 2 ! 5.4 0.0 0.0023 4.9 315 387 .. 291 361 .. 263 372 .. 0.81 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.00079 DUF1253 30 lrdqgftrpkvLillpfrniakevvdllikl 60 d ++ ++ L+l p+r+ a+++v+ ++ l Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 98 KLDVSLRECQALVLAPTRELAQQIVKVITAL 128 57889999******************99876 PP == domain 2 score: 5.4 bits; conditional E-value: 0.0023 DUF1253 315 rirnylkkekisFaaiseytsekkisrarklFkkgrkkiLLvteRlhfyrRykikgvkkvifyslPefp 383 +++ + +++++ +++ ++++ + + F +g+ ++L++t+ l r + +++v+ vi y lP+++ Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 291 WLTEQMGARDFTTSSMHGDMDQRERDIIMREFRSGSSRVLITTDLLA--RGIDVQQVSLVINYDLPTNR 357 56677777777778888888999999999**************9776..89*****************9 PP DUF1253 384 efYs 387 e Y Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 358 ENYI 361 9886 PP >> Helicase_RecD Helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 4.4e-05 0.093 3 52 .. 80 131 .. 78 189 .. 0.79 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 4.4e-05 Helicase_RecD 3 tAdRGRGKSaalGl..alaalvaegksnilvtapskenvktlfeflekglea 52 +A+ G+GK+a+ ++ + + v+ ++++ lv ap++e ++++++ +++ + Mallomonas-Sp-CCMP3275_CAMPEP_0182427262 80 QAQSGTGKTATFAIgiLQKLDVSLRECQALVLAPTRELAQQIVKVITALGDF 131 6999*****97655005555566777*****************999765554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (410 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 449 (0.0302744); expected 296.6 (0.02) Passed bias filter: 408 (0.0275099); expected 296.6 (0.02) Passed Vit filter: 38 (0.0025622); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.26u 0.44s 00:00:00.70 Elapsed: 00:00:02.69 # Mc/sec: 397.86 // Query: Mallomonas-Sp-CCMP3275_CAMPEP_0182438840 [L=822] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-35 121.0 0.0 2.6e-34 118.1 0.0 2.1 2 DEAD DEAD/DEAH box helicase 3.4e-23 81.2 0.0 3.9e-22 77.9 0.0 2.5 2 Helicase_C Helicase conserved C-terminal domain 0.0094 15.2 0.0 0.13 11.4 0.0 2.2 2 SecA_DEAD SecA DEAD-like domain ------ inclusion threshold ------ 0.012 15.4 0.0 0.066 13.0 0.0 2.3 1 ResIII Type III restriction enzyme, res subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 118.1 0.0 7.1e-38 2.6e-34 1 147 [. 375 523 .. 375 538 .. 0.93 2 ? 0.1 0.0 0.12 4.6e+02 61 103 .. 701 742 .. 634 748 .. 0.83 Alignments for each domain: == domain 1 score: 118.1 bits; conditional E-value: 7.1e-38 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHHHHHHHT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtlnnlkqfk 68 t+iQa+aip + +g+d++++a+TGsGKTlafl+p+++ + + ++ +al+ aP+reL+ q++ +++ Mallomonas-Sp-CCMP3275_CAMPEP_0182438840 375 TQIQAAAIPILQSGRDIIMQAQTGSGKTLAFLLPLLNVVDPKiNKVQALVFAPSRELVCQIALVGDKIF 443 78*******8889***************************999999*********************** PP TTSSCCEEEETTTSEHHHHHHHHH.TT.-SEEEEEHHHHHHHHHT.TSSHCTTEEEEEEETHHHHHSTT CS xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF DEAD 69 kypklrvlliiggvalardqlsvl.dngvdivvgTpgrlddlvst.gklnlsqvrllVlDEadrllsqg 135 + +++r + iigg++ + +q +l d++++++v+Tpgrl +lv + +kl+l vr +++DE d+ll + Mallomonas-Sp-CCMP3275_CAMPEP_0182438840 444 EGTGIRFMPIIGGTNVR-NQIDKLrDDRPQVLVATPGRLAELVFRlEKLRLGMVRAVIVDETDNLLREP 511 ***************77.8888888889*****************66669999**************** PP THHHHHHHHHHS CS xxxxxxxxxxxx RF DEAD 136 fsdqlnqilqil 147 + +l++il+++ Mallomonas-Sp-CCMP3275_CAMPEP_0182438840 512 YLAELQTILEAT 523 ********9987 PP == domain 2 score: 0.1 bits; conditional E-value: 0.12 HHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEEH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx RF DEAD 61 lnnlkqfkkypklrvlliiggvalardqlsvl....dngvdivvgTp 103 +++l +++k v+ ++g+++++ d+++ l d++ ++vv+T Mallomonas-Sp-CCMP3275_CAMPEP_0182438840 701 CDKLAEMGKI----VAPLHGESSKE-DRKEILnrlrDGRLNLVVTTE 742 4455555554....88899999866.888788888999999999995 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 0.0 0.19 7e+02 5 40 .. 445 477 .. 441 479 .. 0.78 2 ! 77.9 0.0 1e-25 3.9e-22 3 78 .] 704 779 .. 702 779 .. 0.95 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 0.19 HTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS Helicase_C 5 kkgikvailhgelpqnereeileqfnagkskvlvat 40 gi+++++ g+++ +++ +++ ++++ +vlvat Mallomonas-Sp-CCMP3275_CAMPEP_0182438840 445 GTGIRFMPIIGGTNVRNQ---IDKLRDDRPQVLVAT 477 568888888887777776...788888999999998 PP == domain 2 score: 77.9 bits; conditional E-value: 1e-25 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHH CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQri 71 l + g va+lhge ++++r+eil++ ++g+ + +v+t a+rG+d+p++++Vinf+lp++ + y++r+ Mallomonas-Sp-CCMP3275_CAMPEP_0182438840 704 LAEMGKIVAPLHGESSKEDRKEILNRLRDGRLNLVVTTELAARGLDIPELTHVINFELPTDAQHYVHRA 772 56677779************************************************************* PP TTSSTTT CS Helicase_C 72 GRtgRag 78 GR+gRag Mallomonas-Sp-CCMP3275_CAMPEP_0182438840 773 GRCGRAG 779 *****97 PP >> SecA_DEAD SecA DEAD-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.4 0.0 3.6e-05 0.13 52 112 .. 339 410 .. 279 415 .. 0.68 2 ? 1.0 0.0 0.054 2e+02 172 210 .. 456 508 .. 451 521 .. 0.65 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 3.6e-05 x..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx RF SecA_DEAD 52 g..........esldellpeafavvreaakrtlgmrhydvQllgglvlheGk..iaemkTGeGKtlvat 108 + +s +++ ++ + v+++ k l ++ ++Q + +l++G+ i++ +TG GKtl+ Mallomonas-Sp-CCMP3275_CAMPEP_0182438840 339 EtavdksifstKSFEDIGVNNLEVLKNLQKMGL-YNPTQIQAAAIPILQSGRdiIMQAQTGSGKTLAFL 406 044444444446777788888888887765544.5789999999999*99977799***********99 PP xxxx RF SecA_DEAD 109 lpav 112 lp++ Mallomonas-Sp-CCMP3275_CAMPEP_0182438840 407 LPLL 410 9875 PP == domain 2 score: 1.0 bits; conditional E-value: 0.054 xxxxxxxxxxxxx.xxxxxxxxx..............xxxxxxxxxxxxxxxxx RF SecA_DEAD 172 gtnnelgfDyLrd.nlalskeek..............vqrelnyaivDEvDsvL 210 gtn + D Lrd + + + + +ivDE D++L Mallomonas-Sp-CCMP3275_CAMPEP_0182438840 456 GTNVRNQIDKLRDdR-PQVLVATpgrlaelvfrleklRLGMVRAVIVDETDNLL 508 566666666666632.22222222445666666555455678899******998 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 0.0 1.8e-05 0.066 23 66 .. 386 435 .. 358 450 .. 0.79 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 1.8e-05 .TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHH CS ResIII 23 dekkrglivmaTGtGKTlvaasliarlar......kflflvprkelleqa 66 ++ + ++ ++ TG+GKTl + ++++ ++l+++p++el+ q Mallomonas-Sp-CCMP3275_CAMPEP_0182438840 386 QSGRDIIMQAQTGSGKTLAFLLPLLNVVDpkinkvQALVFAPSRELVCQI 435 3458899************997677776677888************9885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (822 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1199 (0.0808442); expected 296.6 (0.02) Passed bias filter: 319 (0.021509); expected 296.6 (0.02) Passed Vit filter: 31 (0.00209022); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.36u 0.43s 00:00:00.79 Elapsed: 00:00:02.42 # Mc/sec: 886.65 // Query: Mallomonas-Sp-CCMP3275_CAMPEP_0182430666 [L=554] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-43 146.3 0.0 2e-42 144.5 0.0 1.9 2 DEAD DEAD/DEAH box helicase 1.3e-27 95.4 0.0 3e-27 94.2 0.0 1.6 1 Helicase_C Helicase conserved C-terminal domain 0.00011 22.0 0.0 0.0011 18.8 0.0 2.3 2 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.11 11.5 0.0 0.11 11.5 0.0 2.4 2 CMS1 U3-containing 90S pre-ribosomal complex subun 0.15 12.9 1.5 0.42 11.5 1.0 1.7 1 HK97-gp10_like Bacteriophage HK97-gp10, putative tail-compon Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 144.5 0.0 6.9e-46 2e-42 2 167 .. 166 333 .. 165 335 .. 0.94 2 ? -1.9 0.0 0.68 2e+03 66 102 .. 410 445 .. 356 452 .. 0.66 Alignments for each domain: == domain 1 score: 144.5 bits; conditional E-value: 6.9e-46 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT.....EEEEEESSHHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.....xxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq.....kalivaPtreLaeqtlnnl 64 piQa+++p + g+d+++ a+TGsGKTlaflip++ +l++t +q ++li+aPtreLa q + + Mallomonas-Sp-CCMP3275_CAMPEP_0182430666 166 PIQAQCWPPLFAGKDCIGIAATGSGKTLAFLIPALLKLTKTpASQqkyhpRMLILAPTRELAMQSEQVV 234 8***************************************988889*********************** PP HHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHHHHS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 65 kqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrlls 133 +++ + ++++ggv++ q+ l++ +divv+Tpgrl+dl+ +g +ls+v +lVlDEadr+l+ Mallomonas-Sp-CCMP3275_CAMPEP_0182430666 235 VDVGVS---SSVCVYGGVSKG-PQKAALRE-ADIVVATPGRLQDLMDEGAVDLSDVVYLVLDEADRMLD 298 ****88...888899****77.99999965.******************99****************** PP TTTHHHHHHHHHHSHHCTT.SEEEEEESS-THHHH CS xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF DEAD 134 qgfsdqlnqilqilcdgkr.lqvivlSATlpkdvk 167 gf++ +++il+ ++ +++ +q++++SAT+p++++ Mallomonas-Sp-CCMP3275_CAMPEP_0182430666 299 DGFEPAIRKILSSCRSATNgRQTVMFSATWPEEIR 333 *************888876688********98775 PP == domain 2 score: -1.9 bits; conditional E-value: 0.68 HHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 66 qfkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 + + +v++i+g++ +a d++ l +++v ++++T Mallomonas-Sp-CCMP3275_CAMPEP_0182430666 410 S----RGYSVTAIHGDMGQA-DRTASLdefkSGRVPLLIAT 445 2....334677888877766.55555556666667777766 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 94.2 0.0 1e-30 3e-27 4 78 .] 409 483 .. 407 483 .. 0.97 Alignments for each domain: == domain 1 score: 94.2 bits; conditional E-value: 1e-30 HHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHHT CS Helicase_C 4 ekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriG 72 + +g++v+++hg++ q +r++ l++f++g+ + l+at+va+rG+d+p+v++Vin+++p +v++yi+riG Mallomonas-Sp-CCMP3275_CAMPEP_0182430666 409 QSRGYSVTAIHGDMGQADRTASLDEFKSGRVPLLIATDVAARGLDIPNVEYVINYSFPLTVEDYIHRIG 477 578****************************************************************** PP TSSTTT CS Helicase_C 73 RtgRag 78 RtgRag Mallomonas-Sp-CCMP3275_CAMPEP_0182430666 478 RTGRAG 483 ****97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.7 0.5 0.35 1e+03 74 125 .. 64 115 .. 24 136 .. 0.55 2 ! 18.8 0.0 3.7e-07 0.0011 32 183 .. 185 329 .. 179 330 .. 0.76 Alignments for each domain: == domain 1 score: -0.7 bits; conditional E-value: 0.35 TGG...GEEEESSS-B---SEEEEEHHHHH...................... CS ResIII 74 eskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhka 125 ++ +++++ ++i+ +kk++ +++ +++ +++ ++++ ++++ +++ + Mallomonas-Sp-CCMP3275_CAMPEP_0182430666 64 QDIQVNTNDESISMKKKKRINDSNNLSETLSKGDYIEHADTLIMSTTEIDNF 115 3333444444444444444445555555555555555555555555555555 PP == domain 2 score: 18.8 bits; conditional E-value: 3.7e-07 ESTTSTHHHHHHH.HHHHH-S..........-EEEEESSHHHHHHHHHHGGGGTGG...GEEEESSS-B CS ResIII 32 maTGtGKTlvaas.liarlar..........kflflvprkelleqaleefkkfeskkiefekkniavak 89 +aTG+GKTl + ++++l + + l+l+p++el q ++ ++ Mallomonas-Sp-CCMP3275_CAMPEP_0182430666 185 AATGSGKTLAFLIpALLKLTKtpasqqkyhpRMLILAPTRELAMQSEQVV---------------VDVG 238 79*******9984345555558888999999***************9877...............2333 PP ---SEEEEEHHHHH..................................HTHHHHTTT-SEEEEETGGGT CS ResIII 90 kdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrl 158 ++ + +++sk ++ +++i+++t +l+ ++e+ l +++ DEa r+ Mallomonas-Sp-CCMP3275_CAMPEP_0182430666 239 VSSSVCVYGGVSKGPQKAALREADIVVATPGRLQDLMDEG-----------AVDLSDVVYLVLDEADRM 296 3445567888888888899999999999999999998873...........233455679999999999 PP TSTT....THHHHH.....---SEEEEEESS-S CS ResIII 159 sakkk...yreile.....fkkafllglTATpe 183 ++ r+il + + ++AT++ Mallomonas-Sp-CCMP3275_CAMPEP_0182430666 297 LDDGFepaIRKILSscrsaTNGRQTVMFSATWP 329 998865555555558877766666799999875 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.9 2.1 0.22 6.5e+02 8 57 .. 32 81 .. 25 114 .. 0.65 2 ? 11.5 0.0 3.6e-05 0.11 180 209 .. 263 292 .. 256 298 .. 0.91 Alignments for each domain: == domain 1 score: -0.9 bits; conditional E-value: 0.22 CMS1 8 rkaendekgkkeksekkRskkkerkkeklketqDveaglneavarmdpel 57 ++ e+dek + +k kk kk+ + + + +qD++ n++++ m++++ Mallomonas-Sp-CCMP3275_CAMPEP_0182430666 32 TDLEKDEKRAARKAAKKAAKKAAKLAGTNHFVQDIQVNTNDESISMKKKK 81 44455555555565555555555555555566788887777777776655 PP == domain 2 score: 11.5 bits; conditional E-value: 3.6e-05 CMS1 180 iavGtpgRiadLleeeslsvdeLkrivlDa 209 i v tpgR++dL++e+++ ++++ ++vlD Mallomonas-Sp-CCMP3275_CAMPEP_0182430666 263 IVVATPGRLQDLMDEGAVDLSDVVYLVLDE 292 7899************************96 PP >> HK97-gp10_like Bacteriophage HK97-gp10, putative tail-component # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 1.0 0.00014 0.42 13 51 .. 33 68 .. 26 98 .. 0.68 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 0.00014 HK97-gp10_like 13 avekeikkalkkaakellakakkrtpvdtgGtLrksitv 51 ++ek k+a++kaak++++ka k++ t + + i+v Mallomonas-Sp-CCMP3275_CAMPEP_0182430666 33 DLEKDEKRAARKAAKKAAKKAAKLAG--T-NHFVQDIQV 68 47888899999999999999999998..4.555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (554 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 742 (0.0500303); expected 296.6 (0.02) Passed bias filter: 398 (0.0268357); expected 296.6 (0.02) Passed Vit filter: 44 (0.00296676); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.29u 0.45s 00:00:00.74 Elapsed: 00:00:03.38 # Mc/sec: 427.85 // Query: Mallomonas-Sp-CCMP3275_CAMPEP_0182419226 [L=348] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-24 84.4 0.0 7.6e-24 83.3 0.0 1.6 1 Helicase_C Helicase conserved C-terminal domain Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.3 0.0 5.1e-28 7.6e-24 3 78 .] 122 197 .. 120 197 .. 0.97 Alignments for each domain: == domain 1 score: 83.3 bits; conditional E-value: 5.1e-28 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHH CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQri 71 l++ +++++ +hg+l+++ere l+ f++g+ + lv++++a+rG+d+p+v++V++fd+p ++ +y++r+ Mallomonas-Sp-CCMP3275_CAMPEP_0182419226 122 LTDADVSCLSYHGDLNSKERELNLDMFRNGTMNYLVCSDIAARGLDIPEVSHVVMFDFPLNPVDYLHRA 190 6788999************************************************************** PP TTSSTTT CS Helicase_C 72 GRtgRag 78 GRtgRag Mallomonas-Sp-CCMP3275_CAMPEP_0182419226 191 GRTGRAG 197 *****97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (348 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 269 (0.0181377); expected 296.6 (0.02) Passed bias filter: 216 (0.0145641); expected 296.6 (0.02) Passed Vit filter: 14 (0.000943969); expected 14.8 (0.001) Passed Fwd filter: 1 (6.74263e-05); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.20u 0.33s 00:00:00.53 Elapsed: 00:00:02.35 # Mc/sec: 386.55 // Query: Mallomonas-Sp-CCMP3275_CAMPEP_0182438098 [L=739] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-46 156.7 0.0 1.6e-45 154.6 0.0 1.9 2 DEAD DEAD/DEAH box helicase 6.6e-26 89.9 0.1 1.8e-25 88.5 0.0 1.8 1 Helicase_C Helicase conserved C-terminal domain 0.0061 16.4 0.0 0.0098 15.7 0.0 1.3 1 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.29 9.5 0.1 1.9 6.7 0.0 2.1 3 DUF1253 Protein of unknown function (DUF1253) Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 154.6 0.0 4.2e-49 1.6e-45 1 168 [. 274 452 .. 274 453 .. 0.95 2 ? -0.7 0.0 0.23 8.5e+02 71 102 .. 524 558 .. 511 565 .. 0.75 Alignments for each domain: == domain 1 score: 154.6 bits; conditional E-value: 4.2e-49 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT............EEEEEESSHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx............xxxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq............kalivaPtreL 56 tp+Q+ +ip +ggd++++a+TGsGKT+ fl pv+ +l+t ali+aPtreL Mallomonas-Sp-CCMP3275_CAMPEP_0182438098 274 TPVQKYSIPIGTTGGDMMACAQTGSGKTAGFLFPVLALMLRTgA-AptpdsrrkstypTALILAPTREL 341 79*************************************99854.469********************* PP HHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 57 aeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVl 125 a q+++++ +f+ +++r ++++gg +++ +q++ ld+g+di+v+Tpgrl+dl+++g+++l +r+lVl Mallomonas-Sp-CCMP3275_CAMPEP_0182438098 342 ASQIYDEALKFAYCTGIRPVVVYGGANIQ-NQTRELDRGADILVATPGRLVDLIERGRIKLDIIRFLVL 409 ************99*************99.9999**999******************99********** PP ETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 126 DEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 DEadr+l++gf++q+++i+++ + ++q+ ++SAT+p ++++ Mallomonas-Sp-CCMP3275_CAMPEP_0182438098 410 DEADRMLDMGFEPQIRRIVEQEGMPLQRQTFMFSATFPVEIQR 452 *********************877779**********977665 PP == domain 2 score: -0.7 bits; conditional E-value: 0.23 SSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 71 pklrvlliiggvalardqlsvl....dngvdivvgT 102 ++ ++ i+g+++++ +++ l ++ i+v+T Mallomonas-Sp-CCMP3275_CAMPEP_0182438098 524 ENFAACSIHGDKSQR-EREDALkafkTARASILVAT 558 567789999999955.55555567897789999998 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.5 0.0 4.8e-29 1.8e-25 4 78 .] 522 596 .. 519 596 .. 0.96 Alignments for each domain: == domain 1 score: 88.5 bits; conditional E-value: 4.8e-29 HHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHHT CS Helicase_C 4 ekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriG 72 ++++ ++ +hg+ +q+ere+ l+ f++ + +lvat+va+rG+d+p+v Vinfdlp + ++y++riG Mallomonas-Sp-CCMP3275_CAMPEP_0182438098 522 IRENFAACSIHGDKSQREREDALKAFKTARASILVATDVAARGLDIPNVVQVINFDLPSNIDDYVHRIG 590 567899*************************************************************** PP TSSTTT CS Helicase_C 73 RtgRag 78 RtgR+g Mallomonas-Sp-CCMP3275_CAMPEP_0182438098 591 RTGRVG 596 ****86 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.0 2.6e-06 0.0098 32 182 .. 294 446 .. 266 448 .. 0.75 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 2.6e-06 ESTTSTHHHHHHHHHHHH-S.................-EEEEESSHHHHHHHHHHGGGGTGG...GEEE CS ResIII 32 maTGtGKTlvaasliarlar.................kflflvprkelleqaleefkkfeskkiefekk 83 + TG+GKT + +++l+ +l+l+p++el +q ++e k+ ++ Mallomonas-Sp-CCMP3275_CAMPEP_0182438098 294 AQTGSGKTAGFLFPVLALMLrtgaaptpdsrrkstypTALILAPTRELASQIYDEA----LKFAYCTGI 358 68******99984444444444558999999999*******************887....244444555 PP ESSS-B---SEEEEEHHHHH..................................HTHHHHTTT-SEEEE CS ResIII 84 niavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviii 152 ++v + +++++++++++++ ++i+++t +l +e++ + +ld +++ Mallomonas-Sp-CCMP3275_CAMPEP_0182438098 359 RPVVVYGGANIQNQTRELDR-------GADILVATPGRLVDLIERG-----------RIKLDIIRFLVL 409 66667776666666666655.......7889999999999888753...........344556669999 PP ETGGGTTSTT....THHHHH....---SEEEEEESS- CS ResIII 153 DEaHrlsakkk...yreile....fkkafllglTATp 182 DEa r+ ++ r+i+e + + ++AT+ Mallomonas-Sp-CCMP3275_CAMPEP_0182438098 410 DEADRMLDMGFepqIRRIVEqegmPLQRQTFMFSATF 446 9999999888767777777788884455678889987 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.6 0.0 0.09 3.3e+02 37 60 .. 329 352 .. 324 362 .. 0.84 2 ? -3.3 0.0 0.58 2.1e+03 206 233 .. 427 454 .. 423 461 .. 0.74 3 ? 6.7 0.0 0.00052 1.9 297 386 .. 498 585 .. 473 597 .. 0.83 Alignments for each domain: == domain 1 score: -0.6 bits; conditional E-value: 0.09 DUF1253 37 rpkvLillpfrniakevvdllikl 60 p+ Lil p+r+ a ++ d +k+ Mallomonas-Sp-CCMP3275_CAMPEP_0182438098 329 YPTALILAPTRELASQIYDEALKF 352 5889***********998877665 PP == domain 2 score: -3.3 bits; conditional E-value: 0.58 DUF1253 206 wvldgqaknyRQtiilssietpeinslf 233 +v ++ + RQt ++s++ ei+ l Mallomonas-Sp-CCMP3275_CAMPEP_0182438098 427 IVEQEGMPLQRQTFMFSATFPVEIQRLA 454 5555666778*******99988888775 PP == domain 3 score: 6.7 bits; conditional E-value: 0.00052 DUF1253 297 eskekgvlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkgrkkiLLvteRlhfyrR 365 + + +lif+ + +++ l +e++ ++i+ s+++ + a k+Fk+ r++iL+ t+ + r Mallomonas-Sp-CCMP3275_CAMPEP_0182438098 498 RAPKGLILIFVETKRGADYLEECLIRENFAACSIHGDKSQREREDALKAFKTARASILVATDVAA--RG 564 4556667888877665555789999************************************9876..88 PP DUF1253 366 ykikgvkkvifyslPefpefY 386 i +v +vi + lP++ + Y Mallomonas-Sp-CCMP3275_CAMPEP_0182438098 565 LDIPNVVQVINFDLPSNIDDY 585 999999999999999987666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (739 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 320 (0.0215764); expected 296.6 (0.02) Passed bias filter: 208 (0.0140247); expected 296.6 (0.02) Passed Vit filter: 30 (0.00202279); expected 14.8 (0.001) Passed Fwd filter: 8 (0.000539411); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.36u 0.30s 00:00:00.65 Elapsed: 00:00:02.00 # Mc/sec: 959.72 // Query: Mallomonas-Sp-CCMP3275_CAMPEP_0182437544 [L=805] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-35 119.5 0.0 8.1e-33 113.2 0.0 2.7 3 DEAD DEAD/DEAH box helicase 9e-21 73.5 0.3 4e-20 71.4 0.0 2.3 2 Helicase_C Helicase conserved C-terminal domain 0.0017 18.3 0.0 0.0051 16.7 0.0 1.8 1 Helicase_C_2 Helicase C-terminal domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 113.2 0.0 1.6e-36 8.1e-33 1 152 [. 203 390 .. 203 399 .. 0.89 2 ? 3.0 0.0 0.013 62 149 164 .. 482 498 .. 450 502 .. 0.63 3 ? -3.6 0.0 1.3 6.4e+03 50 87 .. 632 646 .. 609 668 .. 0.51 Alignments for each domain: == domain 1 score: 113.2 bits; conditional E-value: 1.6e-36 -HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT...................EEEE CS xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxx RF DEAD 1 tpiQaeaiplil.gggdvlvaaeTGsGKTlaflipviqilletkdq...................kali 49 tpiQ+++ip++l gg dv+++aeTGsGKTlaf++p++++ll ali Mallomonas-Sp-CCMP3275_CAMPEP_0182437544 203 TPIQSAVIPQVLrGGVDVVGCAETGSGKTLAFVLPILHRLLWD--WspgrdaqetgdgrergrcpYALI 269 89**********7799************************975..33479******************* PP EESSHHHHHHHHHHHHHHTTT.......SSCCEEEETTTSEHHHHHHHHH..TT.-SEEEEEHHHHHHH CS xxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF DEAD 50 vaPtreLaeqtlnnlkqfkky.......pklrvlliiggvalardqlsvl..dngvdivvgTpgrlddl 109 ++PtreLa q+++ ++++++ +++v+ ++gg ++ +q+++l + v+++vgTpgrl ++ Mallomonas-Sp-CCMP3275_CAMPEP_0182437544 270 LTPTRELALQICSVVRSVADServreagYRVNVVSVVGGLSEH-KQRRQLdgTRAVHVLVGTPGRLGEM 337 ******************999889888888899999*****55.99999989788************** PP HHT...TSSHC.........TTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTT CS xxx...xxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 110 vst...gklnl.........sqvrllVlDEadrllsqgfsdqlnqilqilcdgkr 152 + + + s +r+lV+DE+dr+ ++g+ ++l++i + ++d +r Mallomonas-Sp-CCMP3275_CAMPEP_0182437544 338 IDGrgeR--ERevpvcvrdlSGLRFLVVDEVDRMIEEGQFPELQKIFSTVRDHER 390 *987541..2244677777466**************************9999876 PP == domain 2 score: 3.0 bits; conditional E-value: 0.013 HCTT.SEEEEEESS-TH CS xxxx.xxxxxxxxxxxx RF DEAD 149 dgkr.lqvivlSATlpk 164 +gkr +q++++SAT+++ Mallomonas-Sp-CCMP3275_CAMPEP_0182437544 482 RGKRsRQTLLFSATATS 498 2332599*******984 PP == domain 3 score: -3.6 bits; conditional E-value: 1.3 EESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 50 vaPtreLaeqtlnnlkqfkkypklrvlliiggvalard 87 ++P r L +q+ ++ + Mallomonas-Sp-CCMP3275_CAMPEP_0182437544 632 LLPVRILHAQQQQK-----------------------Q 646 34444444333222.......................2 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.2 0.0 1.5 7.6e+03 5 28 .. 56 79 .. 54 89 .. 0.78 2 ! 71.4 0.0 8e-24 4e-20 8 78 .] 633 703 .. 627 703 .. 0.95 Alignments for each domain: == domain 1 score: -3.2 bits; conditional E-value: 1.5 HTTS-EEEESTTSTHHHHHHHHHH CS Helicase_C 5 kkgikvailhgelpqnereeileq 28 g++v +l +++ +++e i++ Mallomonas-Sp-CCMP3275_CAMPEP_0182437544 56 SLGYNVKRLSSNICDESNESIVKT 79 579999999999999999999875 PP == domain 2 score: 71.4 bits; conditional E-value: 8e-24 S-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHHTTSST CS Helicase_C 8 ikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtgR 76 ++v ilh++ +q++r++ le +++ + +lvat+va+rG+d+++v++V ++d+pr+++ +++r+GR gR Mallomonas-Sp-CCMP3275_CAMPEP_0182437544 633 LPVRILHAQQQQKQRLRSLEAYKDAPRSILVATDVAARGLDIQSVQTVLHYDIPRTPQLFVHRAGRSGR 701 6789***************************************************************** PP TT CS Helicase_C 77 ag 78 ag Mallomonas-Sp-CCMP3275_CAMPEP_0182437544 702 AG 703 97 PP >> Helicase_C_2 Helicase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 0.0 1e-06 0.0051 4 78 .. 603 675 .. 600 687 .. 0.90 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 1e-06 Helicase_C_2 4 llkvvpggvlvffpSyslleevverlkeeleskkievfeekeesrekvleeykeskgaillavcrgkvs 72 +l + pg++l+f++S ++ +++ l++ l+ +i+ ++++++r + le yk++ ++il+a+ Mallomonas-Sp-CCMP3275_CAMPEP_0182437544 603 YLTKHPGRTLIFVNSIKVAKRLDGLLRALLLPVRILHAQQQQKQRLRSLEAYKDAPRSILVATD--VAA 669 67789*************************9999999999**********************99..888 PP Helicase_C_2 73 eGidfs 78 G+d++ Mallomonas-Sp-CCMP3275_CAMPEP_0182437544 670 RGLDIQ 675 888876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (805 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1449 (0.0977008); expected 296.6 (0.02) Passed bias filter: 371 (0.0250152); expected 296.6 (0.02) Passed Vit filter: 79 (0.00532668); expected 14.8 (0.001) Passed Fwd filter: 20 (0.00134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.50u 0.46s 00:00:00.96 Elapsed: 00:00:03.80 # Mc/sec: 552.98 // Query: Mallomonas-Sp-CCMP3275_CAMPEP_0182427676 [L=753] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-41 141.3 0.0 9e-40 135.9 0.0 2.5 2 DEAD DEAD/DEAH box helicase 1.1e-28 98.8 0.1 3e-28 97.5 0.0 1.8 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.04 13.3 0.1 0.15 11.4 0.0 1.9 2 DUF1287 Domain of unknown function (DUF1287) 0.04 13.5 0.4 0.83 9.3 0.0 2.8 2 UBA_3 Fungal ubiquitin-associated domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 135.9 0.0 2.4e-43 9e-40 2 168 .. 344 540 .. 343 541 .. 0.86 2 ? 2.6 0.0 0.021 79 61 102 .. 604 648 .. 567 655 .. 0.77 Alignments for each domain: == domain 1 score: 135.9 bits; conditional E-value: 2.4e-43 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT..........EEEEEESSHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq..........kalivaPtreLaeqt 60 piQ++aip l ++d+++ aeTGsGKT+af+ip++ + + ++ a+++aPtreLa q+ Mallomonas-Sp-CCMP3275_CAMPEP_0182427676 344 PIQRQAIPIGLAQRDIIGIAETGSGKTAAFVIPLLTYISNLPPEmiencaddgpLAIVMAPTRELAMQI 412 8**********99**********************9997754347************************ PP HHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 61 lnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEad 129 +++ +++ y++ + + ++gg++++ dq +l++gv++v+gTpgr++d v+++ l q++++VlDEad Mallomonas-Sp-CCMP3275_CAMPEP_0182427676 413 EEEFIKLARYTSYKSVSVVGGQSIE-DQGFRLRRGVEVVIGTPGRMVDCVESNYMVLNQCNYVVLDEAD 480 ***********************99.******999****************9888999*********** PP HHHSTTTHHHHHHHHHHSHHCT....T.................SEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxx....x.................xxxxxxxxxxxxxxxx RF DEAD 130 rllsqgfsdqlnqilqilcdgk....r.................lqvivlSATlpkdvkk 168 r+ ++gf++q+ +l ++ + + + ++SAT+p +v++ Mallomonas-Sp-CCMP3275_CAMPEP_0182427676 481 RMIDMGFEPQVVAVLDAMGGTLkdedEevaeqqvkianegkalfRITAMFSATMPPEVER 540 *********7777665542222233314444555566667778566*********99987 PP == domain 2 score: 2.6 bits; conditional E-value: 0.021 HHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 61 lnnlkqfkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 ++ + + ++ +++v +++gg ++++++++ l ++ ++i+v+T Mallomonas-Sp-CCMP3275_CAMPEP_0182427676 604 ADVMGRQLEGSGFSVGVLHGGRSQDQREDT-LekfrSGDIQILVAT 648 444444455578899*****9995533333.34779999*****99 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 97.5 0.0 8e-32 3e-28 2 78 .] 610 686 .. 609 686 .. 0.98 Alignments for each domain: == domain 1 score: 97.5 bits; conditional E-value: 8e-32 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQr 70 +le g++v +lhg+ +q++re++le+f++g+ ++lvat+va+rG+d+pdv++V+n+d+p ++y +r Mallomonas-Sp-CCMP3275_CAMPEP_0182427676 610 QLEGSGFSVGVLHGGRSQDQREDTLEKFRSGDIQILVATDVAGRGLDIPDVTLVVNYDMPNKIENYCHR 678 58889**************************************************************** PP HTTSSTTT CS Helicase_C 71 iGRtgRag 78 iGRtgRag Mallomonas-Sp-CCMP3275_CAMPEP_0182427676 679 IGRTGRAG 686 ******97 PP >> DUF1287 Domain of unknown function (DUF1287) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 4e-05 0.15 74 157 .. 556 638 .. 533 644 .. 0.81 2 ? -2.1 0.0 0.56 2.1e+03 37 71 .. 648 680 .. 640 723 .. 0.63 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 4e-05 DUF1287 74 rpDkniDhRRvpnlevffkrkgasltiekkaedyqpGDivtlklsgnlpHigivsdkkeaegv.plviH 141 +D+ +R++ f++ +++ +i ++ + qpGD v++ + + H ++ + e +g + v+H Mallomonas-Sp-CCMP3275_CAMPEP_0182427676 556 DQDSG-KNKRIEQHVQFLSEGQKKSKIVEELRRLQPGDKVIVFVNA-KKHADVMGRQLEGSGFsVGVLH 622 44443.3578999999****9*****************88875555.69**********9998788*** PP DUF1287 142 nigagakeedllleyk 157 + ++ed+l +++ Mallomonas-Sp-CCMP3275_CAMPEP_0182427676 623 GGRSQDQREDTLEKFR 638 ************9985 PP == domain 2 score: -2.1 bits; conditional E-value: 0.56 DUF1287 37 tDvviralrklgidLqklvhedmkknfsaYprkwg 71 tDv r l ++ L v+ dm +++++Y + g Mallomonas-Sp-CCMP3275_CAMPEP_0182427676 648 TDVAGRGLDIPDVTL--VVNYDMPNKIENYCHRIG 680 555555554444433..577777777777764333 PP >> UBA_3 Fungal ubiquitin-associated domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.9 0.0 0.088 3.3e+02 14 34 .. 480 499 .. 476 519 .. 0.69 2 ? 9.3 0.0 0.00022 0.83 15 34 .. 570 589 .. 565 592 .. 0.93 Alignments for each domain: == domain 1 score: 0.9 bits; conditional E-value: 0.088 HHHHHHT--HHHHHHHHHHS- CS UBA_3 14 defvsqGFekdkvievLkrLg 34 d + +GFe + v++vL +g Mallomonas-Sp-CCMP3275_CAMPEP_0182427676 480 DRMIDMGFEPQ-VVAVLDAMG 499 77889***975.888887665 PP == domain 2 score: 9.3 bits; conditional E-value: 0.00022 HHHHHT--HHHHHHHHHHS- CS UBA_3 15 efvsqGFekdkvievLkrLg 34 +f s G k k++e L+rL+ Mallomonas-Sp-CCMP3275_CAMPEP_0182427676 570 QFLSEGQKKSKIVEELRRLQ 589 89*****************8 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (753 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1353 (0.0912278); expected 296.6 (0.02) Passed bias filter: 322 (0.0217113); expected 296.6 (0.02) Passed Vit filter: 43 (0.00289933); expected 14.8 (0.001) Passed Fwd filter: 6 (0.000404558); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.40u 0.41s 00:00:00.81 Elapsed: 00:00:02.98 # Mc/sec: 659.59 // Query: Mallomonas-Sp-CCMP3275_CAMPEP_0182434632 [L=297] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-15 54.6 0.1 2.1e-14 53.1 0.0 1.7 2 Helicase_C Helicase conserved C-terminal domain Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.1 0.0 1.4e-18 2.1e-14 14 74 .. 82 142 .. 75 144 .. 0.95 2 ? -2.7 0.0 0.37 5.4e+03 61 74 .. 230 243 .. 226 243 .. 0.73 Alignments for each domain: == domain 1 score: 53.1 bits; conditional E-value: 1.4e-18 STTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHHTTS CS Helicase_C 14 hgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRt 74 g+++ + r+ l++f+ g+ + lv+tnv+e+Gid+pd+++Vi fd ++++s iQ +GR+ Mallomonas-Sp-CCMP3275_CAMPEP_0182434632 82 SGSMQDSVRNNNLTRFRCGDVPLLVSTNVLEEGIDVPDCSFVIRFDSITTTRSHIQGSGRA 142 589*********************************************************6 PP == domain 2 score: -2.7 bits; conditional E-value: 0.37 SSSHHHHHHHHTTS CS Helicase_C 61 prsvtsyiQriGRt 74 + +y+Q++ R+ Mallomonas-Sp-CCMP3275_CAMPEP_0182434632 230 VQIFHQYLQAVMRA 243 55568999999996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (297 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 349 (0.0235318); expected 296.6 (0.02) Passed bias filter: 278 (0.0187445); expected 296.6 (0.02) Passed Vit filter: 22 (0.00148338); expected 14.8 (0.001) Passed Fwd filter: 1 (6.74263e-05); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.20u 0.39s 00:00:00.59 Elapsed: 00:00:02.58 # Mc/sec: 300.49 // Query: Mallomonas-Sp-CCMP3275_CAMPEP_0182432622 [L=344] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-34 117.5 0.0 3.2e-21 75.8 0.0 2.6 2 Ribonuclease_3 Ribonuclease III domain 1.1e-26 93.2 0.2 3.3e-10 40.0 0.0 3.2 3 Ribonucleas_3_3 Ribonuclease-III-like Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.8 0.0 4.4e-25 3.2e-21 1 114 [] 6 175 .. 6 175 .. 0.74 2 ! 38.9 0.0 1.3e-13 9.7e-10 1 45 [. 291 335 .. 291 340 .. 0.97 Alignments for each domain: == domain 1 score: 75.8 bits; conditional E-value: 4.4e-25 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBHHHHHHSTT-- CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylresefdppknwl 69 er e+LGD+vlk++ t +++++p heg+ls lr++++sn +l+ +ak+ g+ +y+r+++ + l Mallomonas-Sp-CCMP3275_CAMPEP_0182432622 6 ERIEMLGDSVLKFISTIEIYRQNPTHHEGHLSSLRASIISNSFLSNCAKQTGIMKYIRAKSLSEGMQTL 74 89********************************************************75555544444 PP T....................SSSSS.SC........................................ CS Ribonuclease_3 70 p....................lnkdlangk....................................... 79 Mallomonas-Sp-CCMP3275_CAMPEP_0182432622 75 TytppgmspivwhavkshtgsN-------Vhvgcvwnepvligsnrevlsssadqsnqhtdrsmsnsgi 136 4777777777766655555550.......0555555555555555555555566556667777777777 PP ......................TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 80 ......grqsisydlk..eqsiadkvladvvEAliGaiyldsg 114 +++s + + ++ k ladv+EA+iGa y+++g Mallomonas-Sp-CCMP3275_CAMPEP_0182432622 137 iqkneyRKSS--T--QmeLVTVQKKCLADVIEAIIGAFYISGG 175 6654321122..2..13467999*****************987 PP == domain 2 score: 38.9 bits; conditional E-value: 1.3e-13 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHH CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenla 45 +rLefLGDavl++ai++ l++ p+ ++g+ls +s v+n+ la Mallomonas-Sp-CCMP3275_CAMPEP_0182432622 291 QRLEFLGDAVLDFAIVSTLYHSQPHSDPGQLSMQKSLAVCNRHLA 335 7*****************************************998 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.2 0.0 6.3e-13 4.7e-09 22 83 .. 5 67 .. 2 79 .. 0.85 2 ! 13.3 0.0 8e-06 0.06 91 115 .. 154 178 .. 123 186 .. 0.82 3 ! 40.0 0.0 4.4e-14 3.3e-10 2 66 .. 272 335 .. 271 340 .. 0.84 Alignments for each domain: == domain 1 score: 36.2 bits; conditional E-value: 6.3e-13 Ribonucleas_3_3 22 NerLefLGdavLelv.vseyllekakkdegeltkklaslvseeslaeiakelgLgkvlrlrkg 83 +er+e+LGd+vL+++ ++e++ +++++ eg l++ +as++s+ l+++ak+ g+ k++r ++ Mallomonas-Sp-CCMP3275_CAMPEP_0182432622 5 YERIEMLGDSVLKFIsTIEIYRQNPTHHEGHLSSLRASIISNSFLSNCAKQTGIMKYIRAKSL 67 8************872566667778999*******************************9443 PP == domain 2 score: 13.3 bits; conditional E-value: 8e-06 Ribonucleas_3_3 91 grekvladaleAliGAiyldkGaee 115 ++k lad++eA+iGA y+ +G+e+ Mallomonas-Sp-CCMP3275_CAMPEP_0182432622 154 VQKKCLADVIEAIIGAFYISGGIEA 178 45789*****************875 PP == domain 3 score: 40.0 bits; conditional E-value: 4.4e-14 Ribonucleas_3_3 2 eelllqaltHkSyangrkgyNerLefLGdavLelvvseyllekakkde.geltkklaslvseesla 66 +ll++altH S ++++N+rLefLGdavL+++++ l++++++++ g+l+ +++ v++++la Mallomonas-Sp-CCMP3275_CAMPEP_0182432622 272 MSLLTEALTHCSCL--QRTSNQRLEFLGDAVLDFAIVSTLYHSQPHSDpGQLSMQKSLAVCNRHLA 335 689*********99..589***************99999999987765267777776789999987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (344 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 376 (0.0253523); expected 296.6 (0.02) Passed bias filter: 297 (0.0200256); expected 296.6 (0.02) Passed Vit filter: 20 (0.00134853); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.21u 0.38s 00:00:00.59 Elapsed: 00:00:02.45 # Mc/sec: 366.51 // Query: Ochromonas-sp-CCMP1393_CAMPEP_0190297198 [L=505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-11 41.3 0.0 1.9e-10 40.4 0.0 1.4 1 Helicase_C Helicase conserved C-terminal domain 2e-06 28.2 0.1 3.8e-06 27.3 0.1 1.5 1 dsrm Double-stranded RNA binding motif 0.00017 21.3 0.1 0.00033 20.3 0.1 1.5 1 Dicer_dimer Dicer dimerisation domain ------ inclusion threshold ------ 0.057 13.2 0.3 0.55 10.0 0.0 2.2 2 DNA_pol3_chi DNA polymerase III chi subunit, HolC Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.4 0.0 5.1e-14 1.9e-10 17 74 .. 254 311 .. 232 314 .. 0.87 Alignments for each domain: == domain 1 score: 40.4 bits; conditional E-value: 5.1e-14 STHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHHTTS CS Helicase_C 17 lpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRt 74 l++++ + l f +g+++ ++at+v+e+G+d+p++n+Vi fd+ ++ sy+Q +GR+ Ochromonas-sp-CCMP1393_CAMPEP_0190297198 254 LSASQVGDALCAFGDGRCNLMIATSVVEEGLDVPAANCVIYFDAIDTSVSYVQGRGRA 311 66666777788999*******************************************5 PP >> dsrm Double-stranded RNA binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.3 0.1 1e-09 3.8e-06 1 67 [] 414 487 .. 414 487 .. 0.90 Alignments for each domain: == domain 1 score: 27.3 bits; conditional E-value: 1e-09 HHHHHHHHHHHTT....SCCEEEEEEEESSTSSSEEEEEEEEE...TTEEEEEEEESSHHHHHHHHHHH CS dsrm 1 pkskLqelcqkkg....kppnyeyvseegpphslkkFtvtvkv...ngklygtGvgssKKeAeqlAAek 62 p+ +L+ +c+k++ ++y + +++ + ++ F++++++ +++ G+g +KK+A+++AA + Ochromonas-sp-CCMP1393_CAMPEP_0190297198 414 PVAVLNIYCKKTKalcdESYQYNTLARGTTAQTQRPFYCELRYqsdLRTIVKDGWGETKKLAKRRAAFA 482 6788999**********99999999********99********654445555***************** PP HHHHH CS dsrm 63 ALqkL 67 Lq+L Ochromonas-sp-CCMP1393_CAMPEP_0190297198 483 LLQQL 487 ***98 PP >> Dicer_dimer Dicer dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.3 0.1 9e-08 0.00033 3 79 .. 416 495 .. 414 501 .. 0.70 Alignments for each domain: == domain 1 score: 20.3 bits; conditional E-value: 9e-08 HHHHHHHTT...SSS-TT--SS.-EEEEEE--G-EEEEEE--TT-SS--EEEE.--SSHHHHHHHHHHH CS Dicer_dimer 3 allarYCak...Lpsdaftklk.pefevekeeeglvctveLPlnsplreiegk.pmkskklakqsaAfk 66 a+l+ YC+k L + + ++ ++ +++++++ ++c+++ +s lr+i+ + + ++kklak+ aAf Ochromonas-sp-CCMP1393_CAMPEP_0190297198 416 AVLNIYCKKtkaLCDESYQYNTlARGTTAQTQRPFYCELR--YQSDLRTIVKDgWGETKKLAKRRAAFA 482 5677777652224444443222134445555556777666..8******88888*************** PP HHHHHHHH-S-TT CS Dicer_dimer 67 ackkLyelgeLnd 79 ++L + ++L Ochromonas-sp-CCMP1393_CAMPEP_0190297198 483 LLQQLNQSRLLKS 495 ********99976 PP >> DNA_pol3_chi DNA polymerase III chi subunit, HolC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 0.0 0.00015 0.55 83 126 .. 167 207 .. 160 210 .. 0.80 2 ? 0.5 0.1 0.12 4.6e+02 69 124 .. 315 366 .. 306 366 .. 0.75 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00015 DNA_pol3_chi 83 pngeadvlinldgavpeeaerfervvelvdgddeakqaaReryk 126 + + ++vl nl ++ p+ +erf+r++++v++ + + R++++ Ochromonas-sp-CCMP1393_CAMPEP_0190297198 167 SIHTREVLSNLFSESPTGFERFDRLYQVVEE---KFENGRDQFR 207 567799***********************55...5666666665 PP == domain 2 score: 0.5 bits; conditional E-value: 0.12 DNA_pol3_chi 69 aeqpvlltteeeenpngeadvlinldgavpeeaerfervvelvdgddeakqaaRer 124 +++ v++t ++ +++ a++l ++ ++ + a++f+ l ++d+ea ++ R+r Ochromonas-sp-CCMP1393_CAMPEP_0190297198 315 NSSFVMMTERP---DRP-AATLARMELEQHAIATTFQPTSSLYKDDQEASAQQRSR 366 44455555533...333.77899999999999999********9999999999986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (505 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 380 (0.025622); expected 296.6 (0.02) Passed bias filter: 289 (0.0194862); expected 296.6 (0.02) Passed Vit filter: 25 (0.00168566); expected 14.8 (0.001) Passed Fwd filter: 6 (0.000404558); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.26u 0.38s 00:00:00.64 Elapsed: 00:00:02.54 # Mc/sec: 518.98 // Query: Ochromonas-sp-CCMP1393_CAMPEP_0190278296 [L=467] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-22 79.1 0.2 3.9e-22 77.9 0.1 1.7 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.22 11.4 8.2 0.13 12.2 4.0 1.8 1 FRG2 Facioscapulohumeral muscular dystrophy candidate 3.5 7.2 10.8 7.2 6.2 5.3 2.4 3 Suf Suppressor of forked protein (Suf) Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.9 0.1 7.8e-26 3.9e-22 3 78 .] 148 223 .. 146 223 .. 0.97 Alignments for each domain: == domain 1 score: 77.9 bits; conditional E-value: 7.8e-26 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHH CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQri 71 l++ ++++ lh++l+q++r++ l+qf a vlvat+va+rG+d+ +++ Vi++d+ rs++ yi+r+ Ochromonas-sp-CCMP1393_CAMPEP_0190278296 148 LRALDLNCRTLHAQLQQRQRLRALDQFAAMPIGVLVATDVAARGLDISQIQSVIHYDVARSPQVYIHRS 216 7888999************************************************************** PP TTSSTTT CS Helicase_C 72 GRtgRag 78 GRt+Ra+ Ochromonas-sp-CCMP1393_CAMPEP_0190278296 217 GRTARAN 223 *****96 PP >> FRG2 Facioscapulohumeral muscular dystrophy candidate 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 4.0 2.6e-05 0.13 43 122 .. 331 411 .. 308 418 .. 0.82 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 2.6e-05 FRG2 43 SrdssqdgtGas.pkegsvslekkkrsstsgrksesqetaearqrgraaaraGrsrrsrsrsretqppp 110 +d s+d+t p+ +v+ +kkk++++s ++ et e r ++ ++++s+++++++q p Ochromonas-sp-CCMP1393_CAMPEP_0190278296 331 AKDLSKDKTTLPtPAAAAVTDKKKKKKKKSISQAPDDETVEDDDRDDYVDGSEKHKKSQQQPQQQQQPH 399 45555555544215588899999**********************999999****************** PP FRG2 111 lRKsLVtslRal 122 + K+ + lRa Ochromonas-sp-CCMP1393_CAMPEP_0190278296 400 MTKKNLAVLRAQ 411 *99999999986 PP >> Suf Suppressor of forked protein (Suf) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.0 0.68 3.4e+03 214 245 .. 71 102 .. 22 109 .. 0.59 2 ? 1.0 0.0 0.054 2.7e+02 1 17 [. 131 147 .. 131 161 .. 0.90 3 ? 6.2 5.3 0.0014 7.2 163 260 .. 315 426 .. 280 437 .. 0.48 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 0.68 .............XXXXXXXXXXXXXXXXX-T CS Suf 214 qdqqkksesakseeaasqsqkqqqqqpaplpr 245 + ++ +++a+s++++s+ + +++ q++ lp+ Ochromonas-sp-CCMP1393_CAMPEP_0190278296 71 KLKDADANAAISSTTTSTANANANAQTQALPQ 102 33333444444444444444444444444444 PP == domain 2 score: 1.0 bits; conditional E-value: 0.054 HHHHHHHHHHHHHHHHH CS Suf 1 tlvyikymramrRaeGi 17 +lv++ ++a+rR+ G+ Ochromonas-sp-CCMP1393_CAMPEP_0190278296 131 SLVFVNSIKAARRLDGL 147 79*************96 PP == domain 3 score: 6.2 bits; conditional E-value: 0.0014 STT-XXXXXXXXXXXXX......................XXXXXXXXXXX................... CS Suf 163 lksetkqerdkallqkkeeqaas................aesskkrkleeedsekkPdklqmvegrqqd 215 l++ +k+ ++ ++++ + ++++kk+k +++ ++ Pd + Ochromonas-sp-CCMP1393_CAMPEP_0190278296 315 LQHGDKSNNNGVAEKEA-----KdlskdkttlptpaaaaVTDKKKKKK-KKSISQAPDDETVE------ 371 33333333222222222.....13333344444444442222222222.22223344444443...... PP ...........XXXXXXXXXXXXXXXX.........X-TTSHHHHTT.SB-TTSS CS Suf 216 qqkksesakseeaasqsqkqqqqqpap.........lpreivallsv.LPsaqyf 260 ++++ + + +e++++sq+q qqq++p l ++ +ll+ LPs++++ Ochromonas-sp-CCMP1393_CAMPEP_0190278296 372 DDDRDDYVDGSEKHKKSQQQPQQQQQPhmtkknlavLRAQLRELLHTpLPSERTY 426 2333333333333333333333333333344445557777777776447777777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (467 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1390 (0.0937226); expected 296.6 (0.02) Passed bias filter: 386 (0.0260266); expected 296.6 (0.02) Passed Vit filter: 38 (0.0025622); expected 14.8 (0.001) Passed Fwd filter: 3 (0.000202279); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.27u 0.43s 00:00:00.70 Elapsed: 00:00:03.22 # Mc/sec: 378.58 // Query: Ochromonas-sp-CCMP1393_CAMPEP_0190300858 [L=972] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-36 124.9 0.3 6.4e-36 123.3 0.1 1.9 2 DEAD DEAD/DEAH box helicase 1.1e-23 82.8 0.0 3.2e-23 81.3 0.0 1.9 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.027 14.3 0.0 0.027 14.3 0.0 3.0 3 ResIII Type III restriction enzyme, res subunit 0.029 13.4 0.0 0.029 13.4 0.0 3.2 4 CMS1 U3-containing 90S pre-ribosomal complex subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 123.3 0.1 1.7e-39 6.4e-36 1 160 [. 530 683 .. 530 734 .. 0.91 2 ? -3.2 0.0 1.3 5e+03 72 102 .. 854 887 .. 841 889 .. 0.72 Alignments for each domain: == domain 1 score: 123.3 bits; conditional E-value: 1.7e-39 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHHHHHHHT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtlnnlkqfk 68 t+iQa aip +l+g++v+++a+TGsGKTlafl+p+++++ + k+ +a++ aP+reL+ q+ + + +++ Ochromonas-sp-CCMP1393_CAMPEP_0190300858 530 TKIQALAIPPLLRGDNVVLQAQTGSGKTLAFLLPLVEAVDASkKQVQAIVFAPSRELVTQIGRVAASLF 598 79**************************************997766*********************** PP TTSSCCEEEETTTSEHHHHHHHHH.TT.-SEEEEEHHHHHHHHHTTSS.HCTTEEEEEEETHHHHHSTT CS xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF DEAD 69 kypklrvlliiggvalardqlsvl.dngvdivvgTpgrlddlvstgkl.nlsqvrllVlDEadrllsqg 135 k ++ rv+ +igg + + +q + l +++++i+v+Tpgrl +lv + ++ +l +vr++V+DE+d+l+++ Ochromonas-sp-CCMP1393_CAMPEP_0190300858 599 KGTDYRVVTLIGGANVK-NQIKHLrEDRPQILVATPGRLAELVFELERiRLGNVRTIVMDEVDNLMQEP 666 ***************88.8888888777*****************77779999**************99 PP THHHHHHHHHHSHHCTTSEEEEEES CS xxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 136 fsdqlnqilqilcdgkrlqvivlSA 160 + ++++ilq+ v+S Ochromonas-sp-CCMP1393_CAMPEP_0190300858 667 YIGEIETILQAS--------PVFSS 683 999999999874........24444 PP == domain 2 score: -3.2 bits; conditional E-value: 1.3 SCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 72 klrvlliiggvalardqlsvl....dngvdivvgT 102 ++ ++ ++g+++++ d+++ l d++ +++v+T Ochromonas-sp-CCMP1393_CAMPEP_0190300858 854 GIIAAPLHGDSSKE-DRKEILtrirDGRLRLIVAT 887 45667778888866.77777778888888888887 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 81.3 0.0 8.7e-27 3.2e-23 2 78 .] 849 925 .. 848 925 .. 0.98 Alignments for each domain: == domain 1 score: 81.3 bits; conditional E-value: 8.7e-27 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQr 70 +l++ gi +a+lhg+ ++++r+eil++ ++g+ + +vat a+rG+d+pd+++Vinf+lp++ + y++r Ochromonas-sp-CCMP1393_CAMPEP_0190300858 849 ELQEAGIIAAPLHGDSSKEDRKEILTRIRDGRLRLIVATELAARGLDIPDLTHVINFELPTDAQHYVHR 917 58999**************************************************************** PP HTTSSTTT CS Helicase_C 71 iGRtgRag 78 GR+gRag Ochromonas-sp-CCMP1393_CAMPEP_0190300858 918 TGRCGRAG 925 ******97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.7 0.5 0.57 2.1e+03 93 111 .. 225 243 .. 204 300 .. 0.60 2 ? -0.9 0.5 0.32 1.2e+03 75 137 .. 367 431 .. 352 465 .. 0.72 3 ? 14.3 0.0 7.3e-06 0.027 26 66 .. 544 590 .. 522 662 .. 0.79 Alignments for each domain: == domain 1 score: -1.7 bits; conditional E-value: 0.57 SEEEEEHHHHH........ CS ResIII 93 lfgeeqkkskdkeekkkkd 111 + +++q++++++++++k++ Ochromonas-sp-CCMP1393_CAMPEP_0190300858 225 ESNQNQNQNQNQNQESKEE 243 2222222222222222222 PP == domain 2 score: -0.9 bits; conditional E-value: 0.32 GG...GEEEESSS-B---SEEEEEHHHHH.................................... CS ResIII 75 skkiefekkniavakkdklfgeeqkkskdkeekkkkdkeii.lttiqklhkaleeeeend.esks 137 ++ +e+++ +a+ ++ +++ +++++++e +++++e++ + ++q+++ ++ + +++ e +s Ochromonas-sp-CCMP1393_CAMPEP_0190300858 367 EQVKELKRRAKREASRSQFVQFRFEDVDYEREYEEEEEEVLeVLEVQMMQGLMNAQLQQQqEAPS 431 45555666666677777778888888888888888888876488999999999988877766655 PP == domain 3 score: 14.3 bits; conditional E-value: 7.3e-06 SEEEEEESTTSTHHHHHH.....HHHHHH-S......-EEEEESSHHHHHHH CS ResIII 26 krglivmaTGtGKTlvaa.....sliarlar......kflflvprkelleqa 66 ++++++ TG+GKTl + ++ ++++++p++el+ q Ochromonas-sp-CCMP1393_CAMPEP_0190300858 544 DNVVLQAQTGSGKTLAFLlplveAV-----DaskkqvQAIVFAPSRELVTQI 590 6899***********9995554322.....234457*************997 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.0 1.7 0.78 2.9e+03 5 39 .. 229 263 .. 209 311 .. 0.46 2 ? -0.9 0.6 0.18 6.6e+02 16 81 .. 376 453 .. 356 462 .. 0.55 3 ? 13.4 0.0 7.8e-06 0.029 165 208 .. 613 657 .. 588 661 .. 0.91 4 ? -3.2 0.1 0.93 3.5e+03 12 27 .. 703 718 .. 688 734 .. 0.48 Alignments for each domain: == domain 1 score: -3.0 bits; conditional E-value: 0.78 CMS1 5 erkrkaendekgkkeksekkRskkkerkkeklket 39 ++++++++++++k e + ++ ++e+l + Ochromonas-sp-CCMP1393_CAMPEP_0190300858 229 NQNQNQNQNQESKEEVEMGSEASSSDWDDEDLDYL 263 12222222333333333334444444455555444 PP == domain 2 score: -0.9 bits; conditional E-value: 0.18 CMS1 16 gkkeksek............kRskkkerkke...klketqDveaglneavarmdpelLadylasklkrf 69 +k+e s+ +R + e+++e +++e+q + gl +a ++++e + + + Ochromonas-sp-CCMP1393_CAMPEP_0190300858 376 AKREASRSqfvqfrfedvdyER--EYEEEEEevlEVLEVQMM-QGLMNAQLQQQQEAPSGISSTIDREG 441 3333322244556666664434..444444400144455543.47888877777776666555555556 PP CMS1 70 ekDlssvELeDr 81 +D++s L+D Ochromonas-sp-CCMP1393_CAMPEP_0190300858 442 ANDIASPQLQDE 453 677877777775 PP == domain 3 score: 13.4 bits; conditional E-value: 7.8e-06 CMS1 165 klkesitylkksrigiavGtpgRiadLl.eeeslsvdeLkrivlD 208 +k++i++l++ r i v tpgR+a+L+ e e + + +++ iv+D Ochromonas-sp-CCMP1393_CAMPEP_0190300858 613 NVKNQIKHLREDRPQILVATPGRLAELVfELERIRLGNVRTIVMD 657 689************************9999*************9 PP == domain 4 score: -3.2 bits; conditional E-value: 0.93 CMS1 12 ndekgkkeksekkRsk 27 e ++k+ksek+ ++ Ochromonas-sp-CCMP1393_CAMPEP_0190300858 703 ATELSNKRKSEKQQQQ 718 2233334443333222 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (972 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1569 (0.105792); expected 296.6 (0.02) Passed bias filter: 367 (0.0247455); expected 296.6 (0.02) Passed Vit filter: 38 (0.0025622); expected 14.8 (0.001) Passed Fwd filter: 8 (0.000539411); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.48u 0.43s 00:00:00.90 Elapsed: 00:00:03.04 # Mc/sec: 834.62 // Query: Ochromonas-sp-CCMP1393_CAMPEP_0190283686 [L=413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-43 147.1 2.2 3.2e-43 147.1 0.6 1.6 2 DEAD DEAD/DEAH box helicase 7.2e-28 96.2 1.0 1.5e-27 95.2 0.3 1.9 2 Helicase_C Helicase conserved C-terminal domain 0.0003 20.4 0.3 0.0011 18.6 0.0 2.0 2 AAA_19 Part of AAA domain 0.00034 20.4 0.1 0.00063 19.6 0.0 1.5 1 ResIII Type III restriction enzyme, res subunit 0.0084 15.2 0.2 0.029 13.4 0.0 1.9 2 tRNA-synt_1b tRNA synthetases class I (W and Y) ------ inclusion threshold ------ 0.015 14.9 0.7 0.047 13.2 0.4 1.9 2 AAA_30 AAA domain 0.015 14.9 0.0 0.029 14.0 0.0 1.5 1 Helicase_RecD Helicase 0.019 14.2 0.2 0.037 13.3 0.1 1.4 1 UvrD-helicase UvrD/REP helicase N-terminal domain 0.056 12.5 0.0 0.17 10.9 0.0 1.7 2 CMS1 U3-containing 90S pre-ribosomal complex subuni 0.072 13.2 0.1 0.33 11.0 0.1 2.1 1 AAA_22 AAA domain 0.13 12.0 0.2 0.36 10.6 0.1 1.7 2 Fanconi_A Fanconi anaemia group A protein Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 147.1 0.6 2.4e-46 3.2e-43 2 164 .. 65 226 .. 64 230 .. 0.95 2 ? -1.9 0.0 1.5 2e+03 65 102 .. 296 336 .. 272 351 .. 0.69 Alignments for each domain: == domain 1 score: 147.1 bits; conditional E-value: 2.4e-46 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHHHHHHHTT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtlnnlkqfkk 69 +iQ++ai+ l g+dv+++a+ G+GKT+ f+i ++q++ + kd +al++aPtreLa+q+++ ++++++ Ochromonas-sp-CCMP1393_CAMPEP_0190283686 65 AIQQRAIKPTLMGKDVIAQAQSGTGKTATFAIGILQKIDMEiKDCQALVLAPTRELAQQIVKVISSLGD 133 69******************************************************************* PP TSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHHHHSTTTHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 70 ypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsd 138 +++++++++gg+a + d+ + l++gv++vvgTpgr+ d+++++ +l++v l+VlDEad++ls gf++ Ochromonas-sp-CCMP1393_CAMPEP_0190283686 134 FMNIKIMACVGGTAVR-DDIRTLQEGVQVVVGTPGRVYDMINRRAMRLEDVALFVLDEADEMLSRGFKE 201 **************77.999999999****************9988*********************** PP HHHHHHHHSHHCTTSEEEEEESS-T.H CS xxxxxxxxxxxxxxxxxxxxxxxxx.x RF DEAD 139 qlnqilqilcdgkrlqvivlSATlp.k 164 q++++ + + + +qv ++SAT+p + Ochromonas-sp-CCMP1393_CAMPEP_0190283686 202 QIYDVFKYMPET--VQVTIFSATMPlE 226 ********9555..**********944 PP == domain 2 score: -1.9 bits; conditional E-value: 1.5 HHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 65 kqfkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 +q ++++++ v ++g+ +++ ++++ + ++ +++++T Ochromonas-sp-CCMP1393_CAMPEP_0190283686 296 TQKMQEKDFTVSSMHGDLDQR-ERDTIMrefrSGSSRVLITT 336 455555677888888888844.44444446766666666666 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.0 3.2 4.4e+03 15 38 .. 220 243 .. 213 246 .. 0.76 2 ! 95.2 0.3 1.1e-30 1.5e-27 2 78 .] 298 374 .. 297 374 .. 0.97 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 3.2 TTSTHHHHHHHHHHHHTTSSSEEE CS Helicase_C 15 gelpqnereeileqfnagkskvlv 38 + +++ e +e+ ++f ++ +lv Ochromonas-sp-CCMP1393_CAMPEP_0190283686 220 SATMPLEVLEVTQKFMRDPITILV 243 447777889999999999988887 PP == domain 2 score: 95.2 bits; conditional E-value: 1.1e-30 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQr 70 ++++k++ v +hg+l q+er+ i+++f++g+s+vl++t+ ++rGid+++v++Vin+dlp+++++yi+r Ochromonas-sp-CCMP1393_CAMPEP_0190283686 298 KMQEKDFTVSSMHGDLDQRERDTIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 366 6788999************************************************************** PP HTTSSTTT CS Helicase_C 71 iGRtgRag 78 iGR gR+g Ochromonas-sp-CCMP1393_CAMPEP_0190283686 367 IGRSGRFG 374 ******87 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.6 0.0 8.3e-07 0.0011 2 62 .. 70 128 .. 69 155 .. 0.81 2 ? -1.3 0.0 1.4 1.9e+03 8 20 .. 153 167 .. 146 168 .. 0.73 Alignments for each domain: == domain 1 score: 18.6 bits; conditional E-value: 8.3e-07 AAA_19 2 aveaalagnpllvvtGgPGtGKTttlaaiiaallaarekpgrsvllvaptgraakrlserl 62 a++ +l+g +++ ++ GtGKT+t a +i + ++ + k + + l++apt++ a+++ +++ Ochromonas-sp-CCMP1393_CAMPEP_0190283686 70 AIKPTLMGKDVIA-QAQSGTGKTATFAIGILQKIDMEIK-DCQALVLAPTRELAQQIVKVI 128 6665666889999.********************54444.555**************8887 PP == domain 2 score: -1.3 bits; conditional E-value: 1.4 AAA_19 8 a..gnpllvvtGgPG 20 + ++++ vv G PG Ochromonas-sp-CCMP1393_CAMPEP_0190283686 153 RtlQEGVQVVVGTPG 167 44449999999**99 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.6 0.0 4.6e-07 0.00063 8 85 .. 67 142 .. 61 222 .. 0.80 Alignments for each domain: == domain 1 score: 19.6 bits; conditional E-value: 4.6e-07 HHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHG CS ResIII 8 QeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar......kflflvprkelleqaleef 70 Q++ai+ +l k ++ ++ GtGKT + a i++ + ++l+l+p++el +q + + Ochromonas-sp-CCMP1393_CAMPEP_0190283686 67 QQRAIKPTLM-------GKDVIAQAQSGTGKTATFAIGILQKIDmeikdcQALVLAPTRELAQQIVKVI 128 6666666662.......46789999***********5444444456668***************99988 PP GGGTGG...GEEEES CS ResIII 71 kkfeskkiefekkni 85 + ++++++ + Ochromonas-sp-CCMP1393_CAMPEP_0190283686 129 -SSLGDFMNIKIMAC 142 .55556666655555 PP >> tRNA-synt_1b tRNA synthetases class I (W and Y) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.0 0.81 1.1e+03 216 252 .. 226 263 .. 217 271 .. 0.83 2 ! 13.4 0.0 2.2e-05 0.029 31 119 .. 294 384 .. 288 402 .. 0.82 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.81 HHHHHHHHSHCSTTC.SHHHHHHHHHCHHHCHHHHHHH CS tRNA-synt_1b 216 svkkkiqkaitdsde.evrkllklktelsnelieilea 252 +v ++ qk+++d+ v+k++ ++ +++ ++i i + Ochromonas-sp-CCMP1393_CAMPEP_0190283686 226 EVLEVTQKFMRDPITiLVKKDELTLEGIKQFFIAIDRE 263 6778899********99999999999999988877655 PP == domain 2 score: 13.4 bits; conditional E-value: 2.2e-05 HHHHTTSEEEEEEEHHHHCTTTTT..SSHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEECHHHHTCH.H CS tRNA-synt_1b 31 qlqkaghevffliaDltAligdps.kaeerklrkreeelenakaqlakgldpekaeivlqsewlehl.e 97 +l+++ +e f + +++ +++ + ++ +r++r+ + ++ + +la+g+d +++++v++++ + + + Ochromonas-sp-CCMP1393_CAMPEP_0190283686 294 WLTQKMQEKDFTVSSMHGDLDQRErDTIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNReN 362 56666667778889999999999989999*****999999999********************987658 PP HHHHHHHHCTCHCHHHHHHHHH CS tRNA-synt_1b 98 laellrdlgklgslnrmlqfks 119 ++ + + g++g+ ++f + Ochromonas-sp-CCMP1393_CAMPEP_0190283686 363 YIHRIGRSGRFGRKGVSINFIT 384 9999999999888666665555 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.2 0.4 3.5e-05 0.047 4 66 .. 65 128 .. 63 208 .. 0.62 2 ? -3.5 0.0 4.5 6.1e+03 52 84 .. 285 317 .. 280 330 .. 0.71 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 3.5e-05 AAA_30 4 aeQkeaveavltsgdrvavvqGpAGtGKttvlka..lrealeaa.gkrviglAptgkaakvLeeel 66 a Q++a++ +l+ +d ++ q+ GtGKt + + l+++ + + + ++lApt + a+++ + + Ochromonas-sp-CCMP1393_CAMPEP_0190283686 65 AIQQRAIKPTLMGKD--VIAQAQSGTGKTATFAIgiLQKIDMEIkDCQALVLAPTRELAQQIVKVI 128 569999999999998..88999******9775543277776664269***********99987763 PP == domain 2 score: -3.5 bits; conditional E-value: 4.5 AAA_30 52 lAptgkaakvLeeelgiearTiasllerldkae 84 + t + ++ L+++++ + T++s+ ++ld++e Ochromonas-sp-CCMP1393_CAMPEP_0190283686 285 YCNTRRKVDWLTQKMQEKDFTVSSMHGDLDQRE 317 556777777777777777777877777777755 PP >> Helicase_RecD Helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.0 2.1e-05 0.029 3 56 .. 83 138 .. 81 201 .. 0.72 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 2.1e-05 Helicase_RecD 3 tAdRGRGKSaalGlalaalvaegk..snilvtapskenvktlfeflekglealglk 56 +A+ G+GK+a+ ++ + + + ++ ++ lv ap++e ++++++ + + + +++k Ochromonas-sp-CCMP1393_CAMPEP_0190283686 83 QAQSGTGKTATFAIGILQKIDMEIkdCQALVLAPTRELAQQIVKVISSLGDFMNIK 138 6999******9999999998887677*****************9997765555554 PP >> UvrD-helicase UvrD/REP helicase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.1 2.7e-05 0.037 4 61 .. 66 124 .. 64 157 .. 0.86 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 2.7e-05 HHHHHHHS..-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHH CS UvrD-helicase 4 eqreaias..lggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeEl 61 +q++ai++ +g++++ A G+GKT++ a il++i+ e i+ + lv+ T+ a+ + Ochromonas-sp-CCMP1393_CAMPEP_0190283686 66 IQQRAIKPtlMGKDVIAQAQSGTGKTATFAIGILQKIDME-IKDCQALVLAPTRELAQQI 124 68899988878999999**********************9.9999999988887766655 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.0 0.00013 0.17 166 209 .. 148 190 .. 145 202 .. 0.89 2 ? -2.6 0.0 1.6 2.2e+03 47 155 .. 280 305 .. 262 311 .. 0.57 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.00013 CMS1 166 lkesitylkksrigiavGtpgRiadLleeeslsvdeLkrivlDa 209 ++++i +l++ + + vGtpgR+ d+++ ++ ++++ vlD Ochromonas-sp-CCMP1393_CAMPEP_0190283686 148 VRDDIRTLQE-GVQVVVGTPGRVYDMINRRAMRLEDVALFVLDE 190 5678888876.58999*********************9999996 PP == domain 2 score: -2.6 bits; conditional E-value: 1.6 CMS1 47 neavarmdpelLadylasklkrfekDlssvELeDryisasaikDttsftkPrtldnlpefleklseftt 115 ++a++ + + +d+l++k+ Ochromonas-sp-CCMP1393_CAMPEP_0190283686 280 TQAIIYCNTRRKVDWLTQKM------------------------------------------------- 299 55555555555555555554................................................. PP CMS1 116 klvkaaksngsPhtlvltlaalRaaDlaravrklqtkdsk 155 q+kd+ Ochromonas-sp-CCMP1393_CAMPEP_0190283686 300 ----------------------------------QEKDFT 305 ..................................444444 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.1 0.00024 0.33 12 127 .. 85 227 .. 80 231 .. 0.53 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.00024 AAA_22 12 esGvGKTtlarrlaeqldevaeaae...........karvvfveapsstspkellkkllralglpakg. 68 +sG+GKT + +q + +e+++ ++++++ + + + Ochromonas-sp-CCMP1393_CAMPEP_0190283686 85 QSGTGKTATFAIGILQK-IDMEIKDcqalvlaptreL-----------------AQQIVKVISSLGDFm 135 56777776666655553.2222222333333333330.................222222222222222 PP AAA_22 69 ...........................rltteelleallralrrrrv.glliiDEaqh.Lr...seell 105 +t +++++++r + r + l+++DEa+ L+ +e+ + Ochromonas-sp-CCMP1393_CAMPEP_0190283686 136 nikimacvggtavrddirtlqegvqvvVGTPGRVYDMINRRAMRLEDvALFVLDEADEmLSrgfKEQIY 204 233333333333334444444433333345666666666666666668**********88555557777 PP AAA_22 106 eelrdlldetgvklvlvGtp.el 127 + ++ + ++ +v++ + +p e+ Ochromonas-sp-CCMP1393_CAMPEP_0190283686 205 DVFKYMPETVQVTIFSATMPlEV 227 77788888888888888777665 PP >> Fanconi_A Fanconi anaemia group A protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.0 4.9 6.6e+03 51 61 .. 183 193 .. 169 195 .. 0.73 2 ? 10.6 0.1 0.00027 0.36 28 60 .. 272 303 .. 267 306 .. 0.81 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 4.9 Fanconi_A 51 lvlfqltekdl 61 ++lf l e d Ochromonas-sp-CCMP1393_CAMPEP_0190283686 183 VALFVLDEADE 193 78999999986 PP == domain 2 score: 10.6 bits; conditional E-value: 0.00027 Fanconi_A 28 ellkavdvCaevleClekrkvsWlvlfqltekd 60 +l ++ + +++ C +rkv Wl ++ ekd Ochromonas-sp-CCMP1393_CAMPEP_0190283686 272 DLYSTLTITQAIIYCNTRRKVDWLTQ-KMQEKD 303 677788999**************973.556666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (413 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 649 (0.0437597); expected 296.6 (0.02) Passed bias filter: 494 (0.0333086); expected 296.6 (0.02) Passed Vit filter: 46 (0.00310161); expected 14.8 (0.001) Passed Fwd filter: 11 (0.00074169); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 0.26u 0.51s 00:00:00.77 Elapsed: 00:00:03.56 # Mc/sec: 302.83 // Query: Ochromonas-sp-CCMP1393_CAMPEP_0190278668 [L=552] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-31 108.0 0.1 2.5e-29 101.9 0.0 2.5 3 DEAD DEAD/DEAH box helicase 1.2e-23 82.7 0.1 2e-23 82.0 0.1 1.4 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.055 11.8 0.0 0.08 11.2 0.0 1.1 1 Terminase_GpA Phage terminase large subunit (GpA) 0.073 12.9 0.0 0.26 11.0 0.0 1.7 1 ResIII Type III restriction enzyme, res subunit 0.16 11.9 0.0 0.27 11.1 0.0 1.4 1 Helicase_C_2 Helicase C-terminal domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.0 1.9 5.5e+03 125 133 .. 103 111 .. 86 124 .. 0.64 2 ! 101.9 0.0 8.3e-33 2.5e-29 2 164 .. 148 308 .. 147 312 .. 0.85 3 ? 3.4 0.0 0.016 46 62 131 .. 378 458 .. 344 472 .. 0.80 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 1.9 EETHHHHHS CS xxxxxxxxx RF DEAD 125 lDEadrlls 133 lDE ++++s Ochromonas-sp-CCMP1393_CAMPEP_0190278668 103 LDELHKIQS 111 566666655 PP == domain 2 score: 101.9 bits; conditional E-value: 8.3e-33 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHHHHHHHTT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtlnnlkqfkk 69 +iQa+++plil++++v+++a+ G+GKT+af+i ++ i+ ++ + +al+++PtreLa+q+l+++ + ++ Ochromonas-sp-CCMP1393_CAMPEP_0190278668 148 QIQASTLPLILDKHNVIAQAQSGAGKTIAFVIGMLAIVDTNiHEPQALCLTPTRELANQILSDAVRPLS 216 79**************************************99999*******************99999 PP TSSCCEEEETTTSEHH.HHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHHHHSTTTH CS xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 70 ypklrvlliiggvala.rdqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfs 137 r+ ++ + al r+ + + +++vgTpg+++ +s+g l+ s +r++VlDEad++ + ++s Ochromonas-sp-CCMP1393_CAMPEP_0190278668 217 S---RIPSVTYEEALPgREIAAGARCSSHLIVGTPGTVKRWISKGYLKPSTLRIFVLDEADKMVE-ERS 281 8...555555555533023333335569*****************99*9****************.777 PP HHHHHHHHHSHHCTTSEEEEEESS-TH CS xxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 138 dqlnqilqilcdgkrlqvivlSATlpk 164 ++i + + + + q++++SAT k Ochromonas-sp-CCMP1393_CAMPEP_0190278668 282 LGADTIAIRNKLAPSSQILFFSATYGK 308 7677766665556679********975 PP == domain 3 score: 3.4 bits; conditional E-value: 0.016 HHHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEEHHH.......HHHHHHTTSS.HCT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxx.......xxxxxxxxxx.xxx RF DEAD 62 nnlkqfkkypklrvlliiggvalardqlsvl....dngvdivvgTpgr.......lddlvstgkl.nls 118 +++ +++++ +++v ++g+ + + d+++v+ ++++++++T + +v + l Ochromonas-sp-CCMP1393_CAMPEP_0190278668 378 DKVARMMQEGGFEVSTLHGELSPQ-DRDRVMddfrAGRTKVLITTNALargvdvpAVAVVVNFDLpVQR 445 567778888899**********77.99999999998999******988777666655555555663334 PP TEEEEEEETHHHH CS xxxxxxxxxxxxx RF DEAD 119 qvrllVlDEadrl 131 q + lV DEa l Ochromonas-sp-CCMP1393_CAMPEP_0190278668 446 QGQRLVADEATYL 458 4788888888655 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 82.0 0.1 6.7e-27 2e-23 3 78 .] 384 468 .. 382 468 .. 0.90 Alignments for each domain: == domain 1 score: 82.0 bits; conditional E-value: 6.7e-27 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHH..... CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvts..... 66 +++ g++v lhgel++++r++++++f+ag++kvl++tn+++rG+d+p+v vV+nfdlp +++ Ochromonas-sp-CCMP1393_CAMPEP_0190278668 384 MQEGGFEVSTLHGELSPQDRDRVMDDFRAGRTKVLITTNALARGVDVPAVAVVVNFDLPVQRQGqrlva 452 567899****************************************************66666666666 PP ....HHHHHTTSSTTT CS Helicase_C 67 ....yiQriGRtgRag 78 y++riGR+gR+g Ochromonas-sp-CCMP1393_CAMPEP_0190278668 453 deatYLHRIGRCGRFG 468 6666**********97 PP >> Terminase_GpA Phage terminase large subunit (GpA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 2.7e-05 0.08 38 151 .. 163 281 .. 151 296 .. 0.79 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 2.7e-05 Terminase_GpA 38 lvksaqvGkTelllnwigyv..idndp..apmlvvqptkddakefskdrldpmiraspalr.erlapsk 101 ++ aq+G+ +++ +ig +d++ ++l+++pt + a+++ d + p+ p++ e p + Ochromonas-sp-CCMP1393_CAMPEP_0190278668 163 VIAQAQSGAGKTIAFVIGMLaiVDTNIhePQALCLTPTRELANQILSDAVRPLSSRIPSVTyEEALPGR 231 55667776666555555544103333333578***************************9854455667 PP Terminase_GpA 102 srdsdntlldkrfpggmllligansaanlrsksvryvilDEvdaypedvd 151 + +++ + ++ g ++ + s + l+ ++ r+ +lDE d++ e+ + Ochromonas-sp-CCMP1393_CAMPEP_0190278668 232 EIAAGARCSSHLIVGTPGTVKRWISKGYLKPSTLRIFVLDEADKMVEERS 281 99999****************************************66654 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 8.8e-05 0.26 24 69 .. 159 210 .. 134 232 .. 0.75 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 8.8e-05 TTSEEEEEESTTSTHHHHHH.....HHHHHH-S.-EEEEESSHHHHHHHHHH CS ResIII 24 ekkrglivmaTGtGKTlvaa.....sliarlar.kflflvprkelleqalee 69 +k++++ ++ G+GKT+ +++++++ ++l l p++el +q l + Ochromonas-sp-CCMP1393_CAMPEP_0190278668 159 DKHNVIAQAQSGAGKTIAFVigmlaIVDTNIHEpQALCLTPTRELANQILSD 210 56799***********98883333224555555***************9965 PP >> Helicase_C_2 Helicase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 9.1e-05 0.27 10 109 .. 365 460 .. 355 491 .. 0.83 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 9.1e-05 Helicase_C_2 10 ggvlvffpSyslleevverlkeeleskkievfeekeesrekvleeykeskgaillavcrgkvseGidfs 78 ++ +vf+ + ++v++ ++e + + + + e + ++r++v++++++++ ++l+ + + G+d++ Ochromonas-sp-CCMP1393_CAMPEP_0190278668 365 QQSIVFVEMRREADKVARMMQEGGFEVSTLHGELSPQDRDRVMDDFRAGRTKVLITTN--ALARGVDVP 431 5678999999999999999998876544444444899*********************..********* PP Helicase_C_2 79 ddllraviivglPfpnpkdpeveakreylde 109 ++ +v+ + lP + + v+ yl + Ochromonas-sp-CCMP1393_CAMPEP_0190278668 432 --AVAVVVNFDLPVQRQGQRLVADEATYLHR 460 ..77789999999999888888888877765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (552 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 480 (0.0323646); expected 296.6 (0.02) Passed bias filter: 363 (0.0244758); expected 296.6 (0.02) Passed Vit filter: 41 (0.00276448); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.32u 0.44s 00:00:00.76 Elapsed: 00:00:02.54 # Mc/sec: 565.06 // Query: Ochromonas-sp-CCMP1393_CAMPEP_0190269796 [L=733] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.9e-43 146.0 0.0 7.3e-42 142.7 0.0 2.0 2 DEAD DEAD/DEAH box helicase 3.9e-25 87.5 0.8 8.1e-24 83.2 0.1 2.9 3 Helicase_C Helicase conserved C-terminal domain 0.0062 16.3 0.0 0.039 13.7 0.0 2.3 1 ResIII Type III restriction enzyme, res subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 142.7 0.0 1.5e-45 7.3e-42 1 167 [. 89 278 .. 89 280 .. 0.96 2 ? 1.0 0.0 0.052 2.6e+02 21 102 .. 291 395 .. 284 404 .. 0.75 Alignments for each domain: == domain 1 score: 142.7 bits; conditional E-value: 1.5e-45 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT........................ CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq........................ 45 t+iQ+ ++p + + +dv+ +a+TGsGKTl fl+p++q++l++ q Ochromonas-sp-CCMP1393_CAMPEP_0190269796 89 TAIQSISWPIVSQRHDVISVAKTGSGKTLGFLLPAFQNILTN--Qgiektgpkklqkrgmlrydgrsny 155 78*******999***************************984..45679******************** PP ...EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHH CS ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 ...kalivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvs 111 +l++aPtreL+ q++++ +++ k ++ +++++gg+++ q +l++gvd+vv+Tpgr dl + Ochromonas-sp-CCMP1393_CAMPEP_0190269796 156 kppTVLVLAPTRELTMQIASESEKYSKV-GIDTAVVYGGSPKG-PQIFKLRRGVDVVVATPGRCNDLAE 222 **************************97.9***********77.9*****999**************** PP TTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 112 tgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvk 167 +g l+ls++++lVlDEadr+l++gf++q+++i+ +l +++q+++++AT+pk+v+ Ochromonas-sp-CCMP1393_CAMPEP_0190269796 223 MGALDLSKIEYLVLDEADRMLDMGFEPQIREIVDQLPTHAHRQTLFFTATWPKEVQ 278 ************************************99999***********9886 PP == domain 2 score: 1.0 bits; conditional E-value: 0.052 ESTTSSHHHHHHHHHHHHHHHT.CTT.......................EEEEEESSHHHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxx.xxx.......................xxxxxxxxxxxxxxxxxxxx RF DEAD 21 aeTGsGKTlaflipviqillet.kdq.......................kalivaPtreLaeqtlnnlk 65 +++G KTl + ++ q+++ + q k++i + ++ a + +l+ Ochromonas-sp-CCMP1393_CAMPEP_0190269796 291 INVGDNKTLNANKAISQRIKAVkEFQkeevlfdilaeeinisenpqalpKTIIFVGRKSSADELQYSLR 359 556666888888888888766533337888888888888888888888899999999999988888888 PP HHTTTSSCCEEEETTTSEHHHHHHHHH...TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF DEAD 66 qfkkypklrvlliiggvalardqlsvl...dngvdivvgT 102 + + y r+++++g++++a +++++ ++++ ++v+T Ochromonas-sp-CCMP1393_CAMPEP_0190269796 360 RAG-Y---RAAALHGDKSQAVRTDTMDkfrRGRISVLVAT 395 877.5...89999999996644433335588889999988 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.1 0.0 0.071 3.5e+02 42 60 .. 50 68 .. 39 92 .. 0.85 2 ? -3.2 0.0 1.6 7.8e+03 16 33 .. 302 319 .. 298 326 .. 0.76 3 ! 83.2 0.1 1.6e-27 8.1e-24 3 77 .. 358 436 .. 356 437 .. 0.94 Alignments for each domain: == domain 1 score: 1.1 bits; conditional E-value: 0.071 GGTSSSTSTTEEEEEESSS CS Helicase_C 42 vaerGidlpdvnvVinfdl 60 + + G+dl+d++ V++f + Ochromonas-sp-CCMP1393_CAMPEP_0190269796 50 ISVKGLDLNDIQPVMDFKA 68 6679************987 PP == domain 2 score: -3.2 bits; conditional E-value: 1.6 TSTHHHHHHHHHHHHTTS CS Helicase_C 16 elpqnereeileqfnagk 33 + ++r + +++f++ + Ochromonas-sp-CCMP1393_CAMPEP_0190269796 302 NKAISQRIKAVKEFQKEE 319 555679999999999976 PP == domain 3 score: 83.2 bits; conditional E-value: 1.6e-27 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSS....SSSHHHH CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl....prsvtsy 67 l++ g+++a+lhg+ +q r++++++f++g+ vlvat+va+rG+d++d+++Vinfd+ v++y Ochromonas-sp-CCMP1393_CAMPEP_0190269796 358 LRRAGYRAAALHGDKSQAVRTDTMDKFRRGRISVLVATDVAARGLDVKDIEYVINFDFpeggAGAVEDY 426 8999******************************************************7777778888* PP HHHHTTSSTT CS Helicase_C 68 iQriGRtgRa 77 ++riGRt+R Ochromonas-sp-CCMP1393_CAMPEP_0190269796 427 VHRIGRTARG 436 *********7 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.7 0.0 8e-06 0.039 22 78 .. 88 185 .. 39 275 .. 0.65 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 8e-06 .............TTSEEEEEESTTSTHHHHHH...................HHHHHH-S......... CS ResIII 22 e...........dekkrglivmaTGtGKTlvaa...................sliarlar......... 51 ++++ ++ v+ TG+GKTl + + Ochromonas-sp-CCMP1393_CAMPEP_0190269796 88 PtaiqsiswpivSQRHDVISVAKTGSGKTLGFLlpafqniltnqgiektgpkK------Lqkrgmlryd 150 055555556666669999999*********99988777777776666655541......0345556777 PP ........-EEEEESSHHHHHHHHHHGGGGTGG.. CS ResIII 52 ........kflflvprkelleqaleefkkfeskki 78 +l+l+p++el+ q e +k+++ i Ochromonas-sp-CCMP1393_CAMPEP_0190269796 151 grsnykppTVLVLAPTRELTMQIASESEKYSKVGI 185 79999******************988855555433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (733 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 442 (0.0298024); expected 296.6 (0.02) Passed bias filter: 287 (0.0193514); expected 296.6 (0.02) Passed Vit filter: 35 (0.00235992); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.36u 0.37s 00:00:00.73 Elapsed: 00:00:01.83 # Mc/sec: 1045.56 // Query: Ochromonas-sp-CCMP1393_CAMPEP_0190274292 [L=701] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.1e-45 152.3 0.0 2.1e-43 147.7 0.0 2.4 2 DEAD DEAD/DEAH box helicase 2.4e-22 78.5 0.1 2.4e-22 78.5 0.0 2.5 3 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.061 13.4 0.5 0.41 10.7 0.1 2.5 2 AAA_22 AAA domain 0.1 12.2 6.7 3.4 7.2 3.9 2.5 2 SAGA-Tad1 Transcriptional regulator of RNA polII, SAGA, sub 0.23 11.1 5.7 0.45 10.1 3.9 1.4 1 Suf Suppressor of forked protein (Suf) 6.7 5.8 5.5 11 5.0 3.8 1.3 1 vMSA Major surface antigen from hepadnavirus Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 147.7 0.0 8.3e-47 2.1e-43 1 168 [. 113 298 .. 113 299 .. 0.91 2 ? 1.9 0.0 0.053 1.3e+02 71 103 .. 381 416 .. 352 431 .. 0.80 Alignments for each domain: == domain 1 score: 147.7 bits; conditional E-value: 8.3e-47 -HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT...............EEEEEES CS xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx...............xxxxxxx RF DEAD 1 tpiQaeaiplil.gggdvlvaaeTGsGKTlaflipviqillet.kdq...............kalivaP 52 tpiQ++++pl l g dv+++a+TGsGKT afl+p+i ++ + ++ li+aP Ochromonas-sp-CCMP1393_CAMPEP_0190274292 113 TPIQRHCVPLSLeGSFDVMACAQTGSGKTVAFLVPLIAAIHSAaGHEkqkkyrstlttpaqpLSLIIAP 181 89**********55789********************9997764433889******************* PP SHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSS.HCTTE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF DEAD 53 treLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkl.nlsqv 120 treLa q+ ++ +++ +r+++++gg +++ dqls l +gvd++v+Tpgrl d +s++ l +l++v Ochromonas-sp-CCMP1393_CAMPEP_0190274292 182 TRELASQIELEAHKLCFGSAIRCVCVYGGAPTR-DQLSSLARGVDMLVATPGRLNDFLSRE-LiSLERV 248 ****************999***********955.******999****************85.55*9*** PP EEEEEETHHHHHSTTTHHHHHHHHHHSHHCT..TSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF DEAD 121 rllVlDEadrllsqgfsdqlnqilqilcdgk..rlqvivlSATlpkdvkk 168 r+lVlDEadr+l++gf++q++qi + + ++ +++++++SAT+p+ +++ Ochromonas-sp-CCMP1393_CAMPEP_0190274292 249 RFLVLDEADRMLDMGFEPQIRQICDQYNLPAssNRRTLMFSATFPEAMQR 298 ************************997666654799********977765 PP == domain 2 score: 1.9 bits; conditional E-value: 0.053 SSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEEH CS xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx RF DEAD 71 pklrvlliiggvalardqlsvl....dngvdivvgTp 103 p l+ +i+g+ +++ +++ l dn +d++v+T Ochromonas-sp-CCMP1393_CAMPEP_0190274292 381 PALSSEAIHGDRTQQ-QREAALgkfrDNLCDVLVATD 416 678889999999955.666666899**********95 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 1.2 3e+03 8 28 .. 202 222 .. 197 229 .. 0.83 2 ! 78.5 0.0 9.6e-26 2.4e-22 8 78 .] 383 456 .. 378 456 .. 0.93 3 ? -5.2 1.7 6 1.5e+04 21 21 .. 573 573 .. 551 591 .. 0.58 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 1.2 S-EEEESTTSTHHHHHHHHHH CS Helicase_C 8 ikvailhgelpqnereeileq 28 i++++++g+ p+++++ l + Ochromonas-sp-CCMP1393_CAMPEP_0190274292 202 IRCVCVYGGAPTRDQLSSLAR 222 889999999999999888765 PP == domain 2 score: 78.5 bits; conditional E-value: 9.6e-26 S-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHH...HHHHHTT CS Helicase_C 8 ikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvts...yiQriGR 73 +++ ++hg+ +q++re+ l +f+++ ++vlvat+va+rG+d+ dv+ Vi+fdlp s+++ y++riGR Ochromonas-sp-CCMP1393_CAMPEP_0190274292 383 LSSEAIHGDRTQQQREAALGKFRDNLCDVLVATDVAARGLDVADVQQVIQFDLPVSKDDfdsYVHRIGR 451 67889************************************************888887777******* PP SSTTT CS Helicase_C 74 tgRag 78 tgRag Ochromonas-sp-CCMP1393_CAMPEP_0190274292 452 TGRAG 456 ***97 PP == domain 3 score: -5.2 bits; conditional E-value: 6 H CS Helicase_C 21 e 21 + Ochromonas-sp-CCMP1393_CAMPEP_0190274292 573 Q 573 2 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 0.1 0.00017 0.41 56 117 .. 183 277 .. 130 291 .. 0.55 2 ? -2.6 0.0 2.3 5.6e+03 21 82 .. 296 348 .. 294 357 .. 0.62 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00017 AAA_22 56 kkllralglpakg................................rltteelleallralrrrrv.gll 91 ++l+++++l+a++ +t +l + l r l + ++ ++l Ochromonas-sp-CCMP1393_CAMPEP_0190274292 183 RELASQIELEAHKlcfgsaircvcvyggaptrdqlsslargvdmlVATPGRLNDFLSRELISLERvRFL 251 444444444444444445555555555555544444444444444344555556666666666668*** PP AAA_22 92 iiDEaqh.Lrseelleelrdlldetgv 117 ++DEa++ L + ++r + d++++ Ochromonas-sp-CCMP1393_CAMPEP_0190274292 252 VLDEADRmL-DMGFEPQIRQICDQYNL 277 *******77.55555555555665554 PP == domain 2 score: -2.6 bits; conditional E-value: 2.3 AAA_22 21 arrlaeqldevaeaaekarvvfveapsstspkellkkllralglpakgrltteelleallra 82 ++r+a+++ ++ +fv + +s +e ++++ + +++ k+ l+++ l++ l++ Ochromonas-sp-CCMP1393_CAMPEP_0190274292 296 MQRIAQKY--------MRSYCFVAVGRVGSTTESITQVVVKAERNDKR-LKLSLLVQLLQKL 348 56666666........66677777777776666666666666666555.4544444555544 PP >> SAGA-Tad1 Transcriptional regulator of RNA polII, SAGA, subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.3 0.0 0.021 53 11 35 .. 145 169 .. 138 170 .. 0.92 2 ? 7.2 3.9 0.0014 3.4 104 168 .. 542 596 .. 489 641 .. 0.57 Alignments for each domain: == domain 1 score: 3.3 bits; conditional E-value: 0.021 SAGA-Tad1 11 leelktqlvkklGkerwekYfqaLk 35 l++l+++++++ G+e+ +kY+++L+ Ochromonas-sp-CCMP1393_CAMPEP_0190274292 145 LVPLIAAIHSAAGHEKQKKYRSTLT 169 7899******************997 PP == domain 2 score: 7.2 bits; conditional E-value: 0.0014 SAGA-Tad1 104 sngakpvsprksrsskrlkrkvmslrpkergrlkkietkeagkkqsasekasllekrlkekpeia 168 +++ + p ++ +r+ +++r+++r++l+++ +++++++q+++++ ++ + +pe++ Ochromonas-sp-CCMP1393_CAMPEP_0190274292 542 REETGDTAPATGQ-----RRQQQQQRKQQREPLQQQ-QQQEQQQQEQQQQRAM----KRTLPETS 596 2222222222222.....122222344444444444.2222222222122222....22233322 PP >> Suf Suppressor of forked protein (Suf) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 3.9 0.00018 0.45 192 240 .. 539 587 .. 490 600 .. 0.74 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 0.00018 XXXXX..............................XXXXXXXXXXXXXX CS Suf 192 rkleeedsekkPdklqmvegrqqdqqkksesakseeaasqsqkqqqqqp 240 + +ee+ ++ P + q+ +++qq +q++++ ++++++ +q+q+qqqq+ Ochromonas-sp-CCMP1393_CAMPEP_0190274292 539 TAFREETGDTAPATGQRRQQQQQRKQQREPLQQQQQQEQQQQEQQQQRA 587 4445555567888888887777777777777766666665555554443 PP >> vMSA Major surface antigen from hepadnavirus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 3.8 0.0045 11 59 114 .. 546 601 .. 519 656 .. 0.76 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.0045 vMSA 59 giapPagtarRlglrkPtPltpPlrdstpeedkkakeafkqyleerpkeaetaapa 114 g + Pa+ rR+++++ + Pl++ +++e++++++ ++ ++ ++e+ ++a Ochromonas-sp-CCMP1393_CAMPEP_0190274292 546 GDTAPATGQRRQQQQQRKQQREPLQQQQQQEQQQQEQQQQRAMKRTLPETSANESA 601 4567999999*999999999999999888888877777777777666555555442 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (701 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 2059 (0.138831); expected 296.6 (0.02) Passed bias filter: 792 (0.0534017); expected 296.6 (0.02) Passed Vit filter: 151 (0.0101814); expected 14.8 (0.001) Passed Fwd filter: 17 (0.00114625); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.51u 0.70s 00:00:01.21 Elapsed: 00:00:04.75 # Mc/sec: 385.23 // Query: Ochromonas-sp-CCMP1393_CAMPEP_0190277146 [L=476] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-47 160.4 0.0 3e-46 157.0 0.0 2.0 2 DEAD DEAD/DEAH box helicase 4e-27 93.8 0.0 1.1e-26 92.5 0.0 1.8 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.063 11.6 0.0 0.26 9.6 0.0 1.9 2 DUF1253 Protein of unknown function (DUF1253) 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 ResIII Type III restriction enzyme, res subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 157.0 0.0 8e-50 3e-46 1 168 [. 90 269 .. 90 270 .. 0.95 2 ? 1.3 0.0 0.053 2e+02 63 103 .. 333 376 .. 308 425 .. 0.84 Alignments for each domain: == domain 1 score: 157.0 bits; conditional E-value: 8e-50 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT.............EEEEEESSHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.............xxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq.............kalivaPtre 55 tp+Q+ +ip lgggd++++a+TGsGKT+ fl pvi ++l+t al+++Ptre Ochromonas-sp-CCMP1393_CAMPEP_0190277146 90 TPVQKYSIPIGLGGGDMMACAQTGSGKTAGFLFPVIATMLRTgA-ApepegrrgrgtyiHALVLSPTRE 157 79*************************************99854.359********************* PP HHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 56 LaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllV 124 La q+++++++f+ +++r ++++gg +++ q++ ld g+di+v+Tpgrl+dl+++g+ +l vr+lV Ochromonas-sp-CCMP1393_CAMPEP_0190277146 158 LAIQIFDEANKFCYCTGIRPVCVYGGANIQ-LQQRELDAGADIMVATPGRLVDLIERGRVRLDIVRFLV 225 *************99*************99.888999999*****************999*999***** PP EETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 125 lDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 lDEadr+l++gf++q+++i+q ++q+ ++SAT+p ++++ Ochromonas-sp-CCMP1393_CAMPEP_0190277146 226 LDEADRMLDMGFEPQIRRIVQEEGMSVERQTFMFSATFPVEIQR 269 **********************766668**********977765 PP == domain 2 score: 1.3 bits; conditional E-value: 0.053 HHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEEH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx RF DEAD 63 nlkqfkkypklrvlliiggvalardqlsvl....dngvdivvgTp 103 +l+++++ ++ + i+g+++++ +++ l +++ i+v+T Ochromonas-sp-CCMP1393_CAMPEP_0190277146 333 HLEEVLSRNNFPASSIHGDKSQK-EREDALrffkTGRTPILVATD 376 55666666677899999999965.44445557899999****995 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 92.5 0.0 2.9e-30 1.1e-26 3 78 .] 338 413 .. 336 413 .. 0.97 Alignments for each domain: == domain 1 score: 92.5 bits; conditional E-value: 2.9e-30 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHH CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQri 71 l+++++++ +hg+ +q+ere+ l+ f++g++++lvat+va+rG+d+p+v+ Vinfdlp + ++y++ri Ochromonas-sp-CCMP1393_CAMPEP_0190277146 338 LSRNNFPASSIHGDKSQKEREDALRFFKTGRTPILVATDVAARGLDIPNVTQVINFDLPSNIDDYVHRI 406 77899**************************************************************** PP TTSSTTT CS Helicase_C 72 GRtgRag 78 GRtgR+g Ochromonas-sp-CCMP1393_CAMPEP_0190277146 407 GRTGRVG 413 *****86 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.0 0.16 6e+02 203 233 .. 241 271 .. 233 279 .. 0.82 2 ? 9.6 0.0 6.9e-05 0.26 303 387 .. 321 403 .. 290 418 .. 0.89 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 0.16 DUF1253 203 vrkwvldgqaknyRQtiilssietpeinslf 233 +r +v ++ ++ RQt ++s++ ei+ l Ochromonas-sp-CCMP1393_CAMPEP_0190277146 241 IRRIVQEEGMSVERQTFMFSATFPVEIQRLA 271 7777888888999*******99999888776 PP == domain 2 score: 9.6 bits; conditional E-value: 6.9e-05 DUF1253 303 vlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkgrkkiLLvteRlhfyrRykikgv 371 vlif+ + ++++l+++++ +i+ s+k+ + a + Fk+gr++iL+ t+ + r i +v Ochromonas-sp-CCMP1393_CAMPEP_0190277146 321 VLIFVETKRGADHLEEVLSRNNFPASSIHGDKSQKEREDALRFFKTGRTPILVATDVAA--RGLDIPNV 387 67777777777789999**************************************9886..8899**** PP DUF1253 372 kkvifyslPefpefYs 387 ++vi + lP++ + Y Ochromonas-sp-CCMP1393_CAMPEP_0190277146 388 TQVINFDLPSNIDDYV 403 *********9987665 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 6e-05 0.22 32 182 .. 110 263 .. 105 265 .. 0.76 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 6e-05 ESTTSTHHHHHH.HHHHHH-S.................-EEEEESSHHHHHHHHHHGGGGTGG...GEE CS ResIII 32 maTGtGKTlvaa.sliarlar.................kflflvprkelleqaleefkkfeskkiefek 82 + TG+GKT + +ia ++r ++l+l p++el q +e +k++ ++ Ochromonas-sp-CCMP1393_CAMPEP_0190277146 110 AQTGSGKTAGFLfPVIATMLRtgaapepegrrgrgtyiHALVLSPTRELAIQIFDEA----NKFCYCTG 174 67******97764366666667889*****************************999....88888888 PP EESSS-B---SEEEEEHHHHH..................................HTHHHHTTT-SEEE CS ResIII 83 kniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdvii 151 ++ + +++++ +q++++ ++i+++t +l +e+ + +ld +++ Ochromonas-sp-CCMP1393_CAMPEP_0190277146 175 IRPVCVYGGANIQLQQRELDA-------GADIMVATPGRLVDLIER-----------GRVRLDIVRFLV 225 888888888888888888877.......778888888888888765...........345566667888 PP EETGGGTTSTT....THHHHH....---SEEEEEESS- CS ResIII 152 iDEaHrlsakkk...yreile....fkkafllglTATp 182 DEa r+ ++ r+i++ + + ++AT+ Ochromonas-sp-CCMP1393_CAMPEP_0190277146 226 LDEADRMLDMGFepqIRRIVQeegmSVERQTFMFSATF 263 88888888877766655555567774445567777776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (476 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 412 (0.0277797); expected 296.6 (0.02) Passed bias filter: 389 (0.0262288); expected 296.6 (0.02) Passed Vit filter: 38 (0.0025622); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.27u 0.45s 00:00:00.72 Elapsed: 00:00:02.21 # Mc/sec: 562.23 // Query: Ochromonas-sp-CCMP1393_CAMPEP_0190272764 [L=645] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-40 137.5 0.6 9.8e-40 135.8 0.4 1.9 1 DEAD DEAD/DEAH box helicase 2.4e-24 84.9 0.0 6e-24 83.7 0.0 1.7 1 Helicase_C Helicase conserved C-terminal domain 4.4e-06 26.6 0.1 1.4e-05 24.9 0.0 1.9 2 ResIII Type III restriction enzyme, res subunit 0.009 15.2 0.0 0.017 14.3 0.0 1.4 1 PhoH PhoH-like protein ------ inclusion threshold ------ 0.028 12.8 0.2 1.4 7.2 0.0 2.6 3 DUF1253 Protein of unknown function (DUF1253) 0.028 13.8 0.0 0.07 12.5 0.0 1.7 1 AAA_25 AAA domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 135.8 0.4 4e-43 9.8e-40 1 166 [. 92 299 .. 92 302 .. 0.84 Alignments for each domain: == domain 1 score: 135.8 bits; conditional E-value: 4e-43 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT..........EEEEEESSHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq..........kalivaPtreLaeq 59 tp+Q+++ip +l+++++++aa TGsGKTla+++p++q+l ++q ++li++PtreLa+q Ochromonas-sp-CCMP1393_CAMPEP_0190272764 92 TPVQKSVIPRLLNNENLVMAASTGSGKTLAYMLPAVQALSV-QEQmgykrrpkrpRCLILVPTRELARQ 159 79***********************************9966.45679********************** PP HHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 60 tlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEa 128 +l+n+kq+++y k++ +++ gg + a q++ ld+ vd+vv+ pgrl+++ +g+ +sqv+ +++DE+ Ochromonas-sp-CCMP1393_CAMPEP_0190272764 160 VLQNVKQIGHYSKVSSTAVLGGEQYA-LQKKGLDRLVDVVVASPGRLMQHKLQGNVFFSQVSHVIIDEV 227 ************************88.99999*9****************99999999*********** PP HHHHSTTTHHHHHHHHHHSHHCT..............T....................SEEEEEESS-T CS xxxxxxxxxxxxxxxxxxxxxxx..............x....................xxxxxxxxxxx RF DEAD 129 drllsqgfsdqlnqilqilcdgk..............r....................lqvivlSATlp 163 d++l qgf+++++ il+ + + + q+i+ +ATl+ Ochromonas-sp-CCMP1393_CAMPEP_0190272764 228 DTMLTQGFGSDIRAILRGVVSKGgrvstaatstssneKkelttadsvdgsnnvvddspAQLIMATATLT 296 **************9987533324455544444444404444444555555566666677888888877 PP HHH CS xxx RF DEAD 164 kdv 166 k v Ochromonas-sp-CCMP1393_CAMPEP_0190272764 297 KAV 299 665 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.7 0.0 2.4e-27 6e-24 6 78 .] 421 493 .. 417 493 .. 0.97 Alignments for each domain: == domain 1 score: 83.7 bits; conditional E-value: 2.4e-27 TTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHHTTS CS Helicase_C 6 kgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRt 74 g++++ +hg+l+++ere+ l+qf+ g+ + +v++++a+rG+d+p++ +V++fd+p+++ +yi+r+GR+ Ochromonas-sp-CCMP1393_CAMPEP_0190272764 421 AGVRALSYHGDLNSEEREKNLQQFRVGNEQYMVCSDIAARGLDIPEIGHVVMFDFPMNPIDYIHRAGRC 489 799****************************************************************** PP STTT CS Helicase_C 75 gRag 78 gRag Ochromonas-sp-CCMP1393_CAMPEP_0190272764 490 GRAG 493 **97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.9 0.0 5.8e-09 1.4e-05 3 73 .. 90 167 .. 88 223 .. 0.77 2 ? -2.5 0.0 1.5 3.7e+03 164 182 .. 277 295 .. 259 297 .. 0.72 Alignments for each domain: == domain 1 score: 24.9 bits; conditional E-value: 5.8e-09 EE-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHHHH......HHHHHH-S.............. CS ResIII 3 klrpyQeeaienllesiekedekkrglivmaTGtGKTlvaa......sliarlar.............. 51 ++ p+Q+ +i +ll+ +++++ ++ TG+GKTl ++ + Ochromonas-sp-CCMP1393_CAMPEP_0190272764 90 EPTPVQKSVIPRLLN-------NENLVMAASTGSGKTLAYMlpavqaL------Svqeqmgykrrpkrp 145 678999999999994.......689***************95554440......34556666778999* PP -EEEEESSHHHHHHHHHHGGGG CS ResIII 52 kflflvprkelleqaleefkkf 73 ++l+lvp++el q l++ k++ Ochromonas-sp-CCMP1393_CAMPEP_0190272764 146 RCLILVPTRELARQVLQNVKQI 167 ****************999333 PP == domain 2 score: -2.5 bits; conditional E-value: 1.5 THHHHH---SEEEEEESS- CS ResIII 164 yreilefkkafllglTATp 182 + ++++ ++a l+ TAT Ochromonas-sp-CCMP1393_CAMPEP_0190272764 277 SNNVVDDSPAQLIMATATL 295 678888999999999*997 PP >> PhoH PhoH-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.0 7e-06 0.017 2 47 .. 88 133 .. 87 139 .. 0.89 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 7e-06 PhoH 2 ikpktkeQkeylealkkndivfaiGpaGtGKTylavalavealkkk 47 i+ t Qk+++ l +n+ +++++++G+GKT+ + av+al+ + Ochromonas-sp-CCMP1393_CAMPEP_0190272764 88 ITEPTPVQKSVIPRLLNNENLVMAASTGSGKTLAYMLPAVQALSVQ 133 6777999**************************9999999998754 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 0.0 0.00057 1.4 36 63 .. 143 170 .. 134 191 .. 0.83 2 ? 2.5 0.0 0.015 37 133 177 .. 196 234 .. 190 246 .. 0.85 3 ? -2.3 0.0 0.43 1.1e+03 337 384 .. 435 480 .. 431 484 .. 0.79 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.00057 DUF1253 36 trpkvLillpfrniakevvdllikllea 63 +rp+ Lil+p+r+ a +v +++ ++ + Ochromonas-sp-CCMP1393_CAMPEP_0190272764 143 KRPRCLILVPTRELARQVLQNVKQIGHY 170 69***************99988776555 PP == domain 2 score: 2.5 bits; conditional E-value: 0.015 DUF1253 133 DiiiaSPLGlrliieeeekkkrdydflSSiEvlivdqadiilmQN 177 D+++aSP l +++ k + f S + +i+d++d +l Q Ochromonas-sp-CCMP1393_CAMPEP_0190272764 196 DVVVASPGRL---MQH---KLQGNVFFSQVSHVIIDEVDTMLTQG 234 8999999655...455...89999******************996 PP == domain 3 score: -2.3 bits; conditional E-value: 0.43 DUF1253 337 kkisrarklFkkgrkkiLLvteRlhfyrRykikgvkkvifyslPefpe 384 ++ +++ ++F g+++ +++++ + r i ++ +v+++ P +p Ochromonas-sp-CCMP1393_CAMPEP_0190272764 435 EEREKNLQQFRVGNEQYMVCSDIAA--RGLDIPEIGHVVMFDFPMNPI 480 5667778888888888888887665..778999999******999986 PP >> AAA_25 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.0 2.8e-05 0.07 14 94 .. 86 168 .. 76 247 .. 0.72 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 2.8e-05 AAA_25 14 d.ldtppppldwlvkgllprgsltllaGapgtGKStlalqlaaavatGepflg.pvvpepgrVlyls.a 79 + +++p+p ++ ++++ll ++ ++ a+++g+GK+ + a+++++ ++ g +++p++ r+l+l + Ochromonas-sp-CCMP1393_CAMPEP_0190272764 86 QkITEPTPVQKSVIPRLLN-NENLVMAASTGSGKTLAYMLPAVQALSVQEQMGyKRRPKRPRCLILVpT 153 43888999*********96.7789***********9999999988887777788666666666665412 PP AAA_25 80 Edseaelrrrlsail 94 + + ++ +++++i+ Ochromonas-sp-CCMP1393_CAMPEP_0190272764 154 RELARQVLQNVKQIG 168 222445555555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (645 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 581 (0.0391747); expected 296.6 (0.02) Passed bias filter: 341 (0.0229924); expected 296.6 (0.02) Passed Vit filter: 35 (0.00235992); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.32u 0.42s 00:00:00.74 Elapsed: 00:00:02.09 # Mc/sec: 805.58 // Query: Ochromonas-sp-CCMP1393_CAMPEP_0190271750 [L=561] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-42 142.9 0.0 8.2e-41 139.3 0.0 2.4 3 DEAD DEAD/DEAH box helicase 1.1e-26 92.4 0.0 2.8e-26 91.1 0.0 1.7 1 Helicase_C Helicase conserved C-terminal domain 0.0011 18.0 5.0 0.02 13.9 0.0 2.5 2 CMS1 U3-containing 90S pre-ribosomal complex subunit 0.0014 17.1 0.2 0.022 13.2 0.2 2.6 2 DUF1253 Protein of unknown function (DUF1253) ------ inclusion threshold ------ 0.34 10.2 13.9 2.4 7.4 7.6 2.3 2 DDRGK DDRGK domain 1.2 8.7 14.6 2.5 7.7 10.1 1.5 1 Med19 Mediator of RNA pol II transcription subunit 19 3.5 6.9 14.2 5.8 6.2 9.9 1.3 1 SRP-alpha_N Signal recognition particle, alpha subunit, N-te Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.5 0.0 2.8 5.9e+03 67 84 .. 46 63 .. 26 95 .. 0.59 2 ! 139.3 0.0 3.9e-44 8.2e-41 2 168 .. 152 342 .. 151 343 .. 0.91 3 ? 0.8 0.0 0.14 3e+02 63 102 .. 411 453 .. 370 490 .. 0.77 Alignments for each domain: == domain 1 score: -3.5 bits; conditional E-value: 2.8 HTTTSSCCEEEETTTSEH CS xxxxxxxxxxxxxxxxxx RF DEAD 67 fkkypklrvlliiggval 84 kk+ k +v+ i +++++ Ochromonas-sp-CCMP1393_CAMPEP_0190271750 46 KKKKDKKEVASIAEENEK 63 222344455555444443 PP == domain 2 score: 139.3 bits; conditional E-value: 3.9e-44 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT................EEEEEESSH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq................kalivaPtr 54 piQ++++ ++ g+dv++ a+TGsGKTl flip + ++ + k++ k++ivaPtr Ochromonas-sp-CCMP1393_CAMPEP_0190271750 152 PIQSQCWSPLMAGRDVVGIAATGSGKTLGFLIPGMLRMDHFKTDgsgfrstagsngkpapKIVIVAPTR 220 8**********************************99866544479*********************** PP HHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 55 eLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrll 123 eLa q ++ +++++ + + ++i+ggv++ q+s l+ g++ivv+Tpgrl+dl++++ l+l+qv +l Ochromonas-sp-CCMP1393_CAMPEP_0190271750 221 ELAMQSHQVVEEMGGP---KGVCIYGGVPKG-IQRSALQAGAEIVVATPGRLMDLLEERALTLEQVCYL 285 **************99...99********77.9999**999*****************999******** PP EEETHHHHHSTTTHHHHHHHHHHSHHCT............TSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxx RF DEAD 124 VlDEadrllsqgfsdqlnqilqilcdgk............rlqvivlSATlpkdvkk 168 VlDEadr+l++gf++ +++i++++ + r+q++++SAT+p+++++ Ochromonas-sp-CCMP1393_CAMPEP_0190271750 286 VLDEADRMLDEGFEPAIRKIVSMCTLPPnnhsngapfsvqRRQTVMFSATWPEEIRQ 342 *********************9965555666666655555599*********88765 PP == domain 3 score: 0.8 bits; conditional E-value: 0.14 HHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 63 nlkqfkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 +l++ ++ + +v+ i+g+++++ d+++ l ++++ ++++T Ochromonas-sp-CCMP1393_CAMPEP_0190271750 411 ELQTKLSSRGYNVTSIHGDKSQQ-DRTNALeefkSGRIPLLIAT 453 33444444566899****99966.77777778888888888888 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.1 0.0 1.3e-29 2.8e-26 2 78 .] 415 491 .. 414 491 .. 0.98 Alignments for each domain: == domain 1 score: 91.1 bits; conditional E-value: 1.3e-29 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQr 70 +l+ +g++v+ +hg+ +q++r+ le+f++g+ + l+at+va+rG+d+p+v++V n+++p +v++y++r Ochromonas-sp-CCMP1393_CAMPEP_0190271750 415 KLSSRGYNVTSIHGDKSQQDRTNALEEFKSGRIPLLIATDVAARGLDIPQVEYVLNYSFPLTVEDYVHR 483 68899**************************************************************** PP HTTSSTTT CS Helicase_C 71 iGRtgRag 78 iGRtgR g Ochromonas-sp-CCMP1393_CAMPEP_0190271750 484 IGRTGRGG 491 ******86 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.5 2.0 0.014 30 5 56 .. 16 77 .. 3 150 .. 0.65 2 ! 13.9 0.0 9.4e-06 0.02 180 209 .. 260 289 .. 253 295 .. 0.91 Alignments for each domain: == domain 1 score: 3.5 bits; conditional E-value: 0.014 CMS1 5 erkrkaendekgkkeksek.......kRskkkerkkeklketq...Dveaglneavarmdpe 56 + kr++e d +++ ++ e+ +++kkk+++k+++++++ + ++ +++va ++ Ochromonas-sp-CCMP1393_CAMPEP_0190271750 16 KLKRQREADSASEMKQVEDniiegepEKKKKKKKDKKEVASIAeenEKQTANEHTVASNSGV 77 44556655555555555557888888667777777777777763113233333445555554 PP == domain 2 score: 13.9 bits; conditional E-value: 9.4e-06 CMS1 180 iavGtpgRiadLleeeslsvdeLkrivlDa 209 i v tpgR++dLlee +l+++++ ++vlD Ochromonas-sp-CCMP1393_CAMPEP_0190271750 260 IVVATPGRLMDLLEERALTLEQVCYLVLDE 289 7899************************96 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.1 0.0 0.092 2e+02 37 54 .. 210 227 .. 202 237 .. 0.81 2 ! 13.2 0.2 1e-05 0.022 215 360 .. 326 456 .. 320 505 .. 0.74 Alignments for each domain: == domain 1 score: 0.1 bits; conditional E-value: 0.092 DUF1253 37 rpkvLillpfrniakevv 54 pk++i+ p+r+ a++ Ochromonas-sp-CCMP1393_CAMPEP_0190271750 210 APKIVIVAPTRELAMQSH 227 59***********98754 PP == domain 2 score: 13.2 bits; conditional E-value: 1e-05 DUF1253 215 yRQtiilssietpeinslfnsklaNlrgkvklkkkekkigvlekvvlkvrqvFerieaesilkeedarl 283 RQt+++s++ +ei+ l + l+ vk++ ++ + + +v q+ e ++ + e+d++l Ochromonas-sp-CCMP1393_CAMPEP_0190271750 326 RRQTVMFSATWPEEIRQLADKYLSKD--MVKVTVGSDE----LSANHRVTQIVECVQ---AF-EKDKKL 384 58888888888888888888844333..3333333332....233344444433332...22.235555 PP DUF1253 284 kfFtknvlpkltkeskekgvlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkgrkk 352 + +l+k++ +s+++++lif+ + ++ l+++ ++ ++i+ s+++ ++a + Fk+gr++ Ochromonas-sp-CCMP1393_CAMPEP_0190271750 385 N----GLLEKYH-KSRKNRILIFVLYKREAAELQTKLSSRGYNVTSIHGDKSQQDRTNALEEFKSGRIP 448 4....5777888.8899**************************************************** PP DUF1253 353 iLLvteRl 360 +L+ t+ + Ochromonas-sp-CCMP1393_CAMPEP_0190271750 449 LLIATDVA 456 ****9855 PP >> DDRGK DDRGK domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.4 7.6 0.0012 2.4 6 72 .. 4 69 .. 1 99 [. 0.55 2 ? 3.3 0.0 0.022 47 117 148 .. 360 389 .. 346 401 .. 0.84 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.0012 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS DDRGK 6 kkakkleekearkqqreaeeeereerkkkeekrekerkeeeekeeekekkkeeeerkeeeekerkeq 72 k+akk ++k a+k +r+ e e k+ e++ e + e++k+++k+kk+++ +e+e++ ++e+ Ochromonas-sp-CCMP1393_CAMPEP_0190271750 4 KAAKKAAKKAAKKLKRQREADSASEMKQVEDNII-EGEPEKKKKKKKDKKEVASIAEENEKQTANEH 69 5555566666666666555554444444433332.22223333333333333333444444444443 PP == domain 2 score: 3.3 bits; conditional E-value: 0.022 HHHHHHH-S-HHHHHHHHHHHHHHSSS-EEE- CS DDRGK 117 eeLsvefglktedvierikeLeeqgsinGviD 148 +eLs++ + ++++e ++++e+++++nG+++ Ochromonas-sp-CCMP1393_CAMPEP_0190271750 360 DELSANH--RVTQIVECVQAFEKDKKLNGLLE 389 5666654..55789***************996 PP >> Med19 Mediator of RNA pol II transcription subunit 19 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 10.1 0.0012 2.5 108 172 .. 8 73 .. 2 79 .. 0.64 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0012 Med19 108 ePkkkskekhkkskvkdalseetlsdseteegfekkkkkkkkedDkerk.kkkkekkkkkkrkspe 172 + +kk +k+k++++ d++se +++ eg ++kkkkkkk++ + + +ek+ ++++ + Ochromonas-sp-CCMP1393_CAMPEP_0190271750 8 KAAKKAAKKLKRQREADSASEMKQVEDNIIEGEPEKKKKKKKDKKEVASiAEENEKQTANEHTVAS 73 35677888*********9998888888888888888777775444333304444444444444444 PP >> SRP-alpha_N Signal recognition particle, alpha subunit, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.2 9.9 0.0028 5.8 97 185 .. 4 95 .. 1 120 [. 0.56 Alignments for each domain: == domain 1 score: 6.2 bits; conditional E-value: 0.0028 SRP-alpha_N 97 relEkeskkqakspkamkkfeeskkskktvksmierkgkekglekkkkkkkeqeekksaeekpasdpks 165 + + k++kk ak+ k++++ + + k++ ++ ie ++++k+ +kkk+kk+ ++ ++++e+++a++ + Ochromonas-sp-CCMP1393_CAMPEP_0190271750 4 KAAKKAAKKAAKKLKRQREADSASEMKQVEDNIIEGEPEKKK-KKKKDKKEVASIAEENEKQTANEHTV 71 445566666666666666666666666666666666666654.44455555555555555555555544 PP SRP-alpha_N 166 srpstps.......llkaeeipggkts 185 ++ s l+ ++ i+ ts Ochromonas-sp-CCMP1393_CAMPEP_0190271750 72 ASN---SgvglavgLYVEDSITTSMTS 95 444...334477777777777744433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (561 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1512 (0.101949); expected 296.6 (0.02) Passed bias filter: 595 (0.0401187); expected 296.6 (0.02) Passed Vit filter: 84 (0.00566381); expected 14.8 (0.001) Passed Fwd filter: 8 (0.000539411); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.33u 0.61s 00:00:00.94 Elapsed: 00:00:03.17 # Mc/sec: 461.95 // Query: Ochromonas-sp-CCMP1393_CAMPEP_0190298838 [L=1031] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-42 145.5 0.0 1.9e-41 141.4 0.0 2.2 2 DEAD DEAD/DEAH box helicase 6.3e-26 90.0 0.6 1.5e-25 88.7 0.4 1.7 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.039 14.0 0.1 5 7.2 0.0 2.7 2 AAA_22 AAA domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 141.4 0.0 3.8e-45 1.9e-41 1 168 [. 123 434 .. 123 435 .. 0.96 2 ? 1.6 0.0 0.032 1.6e+02 71 102 .. 508 542 .. 480 550 .. 0.79 Alignments for each domain: == domain 1 score: 141.4 bits; conditional E-value: 3.8e-45 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT........................ CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq........................ 45 tpiQ++a+pl l g d++++a+TGsGKT fl+pv+ ++ ++ + Ochromonas-sp-CCMP1393_CAMPEP_0190298838 123 TPIQKHAVPLGLAGCDMMCCAQTGSGKTFSFLLPVVATMQRS--Tyielpdpaatgltsadpssgsfqg 189 89***********************************99764..2467********************* PP ..................................................................... CS ..................................................................... RF DEAD 46 ..................................................................... 45 Ochromonas-sp-CCMP1393_CAMPEP_0190298838 190 gppesaatgsaaggdgstggrnnnhhtkgkdpadtgvaatphsedadnaideqttsssvtgststaaga 258 ********************************************************************* PP ....................................................EEEEEESSHHHHHHHHH CS ....................................................xxxxxxxxxxxxxxxxx RF DEAD 46 ....................................................kalivaPtreLaeqtln 62 a+i+aPtreLa q++ Ochromonas-sp-CCMP1393_CAMPEP_0190298838 259 aadgsaagtgtkapstsndpagtstgtgtaappkpavtmvqrisvdqrgslpLAIILAPTRELASQIHL 327 ********************************************************************* PP HHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 63 nlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrl 131 ++++++ + l++++++gg++l+ +ql+ l+ g+d++v+Tpgrl dlv +g l v llVlDEadr+ Ochromonas-sp-CCMP1393_CAMPEP_0190298838 328 DARRLTFNSTLKTVCCYGGSDLR-QQLTELSSGCDLIVATPGRLNDLVDRGCVALGAVTLLVLDEADRM 395 ******9999***********88.******999****************98779999************ PP HSTTTHHHHHHHHHHSHHCT..TSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF DEAD 132 lsqgfsdqlnqilqilcdgk..rlqvivlSATlpkdvkk 168 l++gf++q+++i+++ + + ++q+ ++SAT+pk++++ Ochromonas-sp-CCMP1393_CAMPEP_0190298838 396 LDMGFEPQIRRIIEQNDMPPtgSRQTFMFSATFPKEIQQ 434 ***************76665445***********99887 PP == domain 2 score: 1.6 bits; conditional E-value: 0.032 SSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 71 pklrvlliiggvalardqlsvl....dngvdivvgT 102 ++r+ i+g+ ++a++ + l d++++i+v+T Ochromonas-sp-CCMP1393_CAMPEP_0190298838 508 YRIRAEEIHGDRTQAQR-EHALrqfrDGHIRILVAT 542 579999****9997744.44445889********99 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.7 0.4 3.1e-29 1.5e-25 5 78 .] 507 583 .. 504 583 .. 0.96 Alignments for each domain: == domain 1 score: 88.7 bits; conditional E-value: 3.1e-29 HTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHH...HHHH CS Helicase_C 5 kkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvts...yiQr 70 ++ i++ +hg+ +q +re+ l+qf++g ++lvat+va+rG+d+p+v++Vi+fdlp s ++ y++r Ochromonas-sp-CCMP1393_CAMPEP_0190298838 507 QYRIRAEEIHGDRTQAQREHALRQFRDGHIRILVATDVAARGLDIPAVTHVIQFDLPLSADDfdvYVHR 575 6789****************************************************999998888**** PP HTTSSTTT CS Helicase_C 71 iGRtgRag 78 iGRtgRag Ochromonas-sp-CCMP1393_CAMPEP_0190298838 576 IGRTGRAG 583 ******97 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.6 0.0 0.014 67 7 20 .. 139 152 .. 137 155 .. 0.91 2 ? 7.2 0.0 0.001 5 37 116 .. 335 412 .. 317 416 .. 0.69 Alignments for each domain: == domain 1 score: 3.6 bits; conditional E-value: 0.014 AAA_22 7 lvvtGesGvGKTtl 20 +++++++G+GKT++ Ochromonas-sp-CCMP1393_CAMPEP_0190298838 139 MMCCAQTGSGKTFS 152 589*********97 PP == domain 2 score: 7.2 bits; conditional E-value: 0.001 AAA_22 37 karvvfveapsstspkellkkllralglpakgrltteelleallralrrrrvglliiDEaqh.Lrseel 104 ++++ +v + +++ ++ l++l + +l + ++++++l+++ + al + ll++DEa++ L + Ochromonas-sp-CCMP1393_CAMPEP_0190298838 335 NSTLKTVCCYGGSDLRQQLTELSSGCDLIVATPGRLNDLVDRGCVALGAV--TLLVLDEADRmL-DMGF 400 44444777777777777777777777777777888888888888777665..57********77.5666 PP AAA_22 105 leelrdlldetg 116 ++r++ ++++ Ochromonas-sp-CCMP1393_CAMPEP_0190298838 401 EPQIRRIIEQND 412 666666666655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1031 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 943 (0.063583); expected 296.6 (0.02) Passed bias filter: 277 (0.0186771); expected 296.6 (0.02) Passed Vit filter: 51 (0.00343874); expected 14.8 (0.001) Passed Fwd filter: 17 (0.00114625); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.59u 0.36s 00:00:00.95 Elapsed: 00:00:01.61 # Mc/sec: 1671.59 // Query: Ochromonas-sp-CCMP1393_CAMPEP_0190282664 [L=403] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-30 105.9 0.1 2.5e-30 105.2 0.1 1.4 1 DEAD DEAD/DEAH box helicase 6.7e-25 86.7 0.1 1.4e-24 85.6 0.0 1.6 1 Helicase_C Helicase conserved C-terminal domain 0.00013 21.8 0.0 0.00032 20.5 0.0 1.7 1 ResIII Type III restriction enzyme, res subunit 0.00095 18.3 0.0 0.0019 17.3 0.0 1.5 1 CMS1 U3-containing 90S pre-ribosomal complex subunit 0.0048 16.3 0.1 4 7.0 0.0 2.4 2 ESR1_C Oestrogen-type nuclear receptor final C-terminal 0.0062 16.1 0.1 0.015 14.9 0.0 1.7 2 HrcA HrcA protein C terminal domain ------ inclusion threshold ------ 6.2 6.1 14.7 1.9 7.7 3.2 2.5 3 YihI Der GTPase activator (YihI) Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 105.2 0.1 1.2e-33 2.5e-30 16 166 .. 2 154 .. 1 157 [. 0.91 Alignments for each domain: == domain 1 score: 105.2 bits; conditional E-value: 1.2e-33 EEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHHHHHHHTTT.SSCCEEEETTTS CS xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF DEAD 16 dvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtlnnlkqfkky.pklrvlliiggv 82 d++++a+ G+GKT++f++ ++ l + +++++ treLa q+ ++ ++f ky p+++ + +ggv Ochromonas-sp-CCMP1393_CAMPEP_0190282664 2 DIICQAKSGMGKTAVFVLSTLHLLEPVaGEVHVVVLCHTRELAFQIQKEYERFSKYlPDVKSRVFYGGV 70 89******************99887666677************************************** PP EHHHHHHHHH.TT.-SEEEEEHHHHHHHHHTTSS.HCTTEEEEEEETHHHHHST.TTHHHHHHHHHHSH CS xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF DEAD 83 alardqlsvl.dngvdivvgTpgrlddlvstgkl.nlsqvrllVlDEadrllsq.gfsdqlnqilqilc 148 + + +l+ l + ++ivvgTpgr++dl +++ +ls+v+ +VlDE+drll + ++++++++i + + Ochromonas-sp-CCMP1393_CAMPEP_0190282664 71 NVK-MDLEALkTEVPHIVVGTPGRILDLATKRNAlDLSKVKHFVLDECDRLLAEvDMRKDVQTIFKCT- 137 *88.77777768889*************9997777******************989999******998. PP HCTTSEEEEEESS-THHH CS xxxxxxxxxxxxxxxxxx RF DEAD 149 dgkrlqvivlSATlpkdv 166 + + qv++ SATl+k+v Ochromonas-sp-CCMP1393_CAMPEP_0190282664 138 -PFEKQVMMYSATLDKEV 154 .667**********9887 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.6 0.0 6.8e-28 1.4e-24 2 78 .] 285 361 .. 284 361 .. 0.98 Alignments for each domain: == domain 1 score: 85.6 bits; conditional E-value: 6.8e-28 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQr 70 lle+++++++++h++l+q+er ++ f++ ++++lv+t+ ++rGid++ vn Vin+d+p+ ++y++r Ochromonas-sp-CCMP1393_CAMPEP_0190282664 285 LLEDCNFPSICIHSNLKQEERITRFKAFKDFSKRILVSTDLFGRGIDIERVNIVINYDFPDQSDQYLHR 353 6999***************************************************************** PP HTTSSTTT CS Helicase_C 71 iGRtgRag 78 +GR+gR+g Ochromonas-sp-CCMP1393_CAMPEP_0190282664 354 VGRAGRFG 361 ******97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 0.0 1.5e-07 0.00032 31 181 .. 6 149 .. 2 152 .. 0.71 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 1.5e-07 EESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG...GEEEESSS-B---S CS ResIII 31 vmaTGtGKTlvaasliarlar......kflflvprkelleqaleefkkfeskkiefekkniavakkdkl 93 ++ G+GKT v ++l++ ++++l++++el q ++e+ + +++ ++ k+++ Ochromonas-sp-CCMP1393_CAMPEP_0190282664 6 QAKSGMGKTAVFVLSTLHLLEpvagevHVVVLCHTRELAFQIQKEY---------ERFSKYLPDVKSRV 65 6778********9777888889************************.........33344556666667 PP EEEEEHHHHH..................................HTHHHHTTT-SEEEEETGGGTTSTT CS ResIII 94 fgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakk 162 f ++ d e k+++ i++ t ++ ++++ l + + ++ DE+ rl a+ Ochromonas-sp-CCMP1393_CAMPEP_0190282664 66 FYGGVNVKMDLEALKTEVPHIVVGTPGRILDLATKRN----------ALDLSKVKHFVLDECDRLLAEV 124 7777777777777778888888888888887766532..........2334456678888888888888 PP .THHHHH.......---SEEEEEESS CS ResIII 163 kyreile.......fkkafllglTAT 181 ++r+ ++ f ++ ++ +AT Ochromonas-sp-CCMP1393_CAMPEP_0190282664 125 DMRKDVQtifkctpF-EKQVMMYSAT 149 755544445557743.4455666666 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.3 0.0 8.7e-07 0.0019 158 209 .. 64 116 .. 22 145 .. 0.78 Alignments for each domain: == domain 1 score: 17.3 bits; conditional E-value: 8.7e-07 CMS1 158 kLFakHiklkesitylkksrigiavGtpgRiadLl.eeeslsvdeLkrivlDa 209 ++F + +k +++ lk+ i vGtpgRi+dL + ++l ++++k+ vlD Ochromonas-sp-CCMP1393_CAMPEP_0190282664 64 RVFYGGVNVKMDLEALKTEVPHIVVGTPGRILDLAtKRNALDLSKVKHFVLDE 116 5677778888899999999999************98899************96 PP >> ESR1_C Oestrogen-type nuclear receptor final C-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.0 0.0 0.0019 4 25 37 .. 179 192 .. 177 196 .. 0.77 2 ! 7.0 0.0 0.0019 4 25 37 .. 239 252 .. 237 256 .. 0.77 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.0019 ESR1_C 25 HSLQtYYin.keee 37 H LQ YYi +e++ Ochromonas-sp-CCMP1393_CAMPEP_0190282664 179 HGLQQYYIRlEEAD 192 99******955555 PP == domain 2 score: 7.0 bits; conditional E-value: 0.0019 ESR1_C 25 HSLQtYYin.keee 37 H LQ YYi +e++ Ochromonas-sp-CCMP1393_CAMPEP_0190282664 239 HGLQQYYIRlEEAD 252 99******955555 PP >> HrcA HrcA protein C terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.9 0.0 7e-06 0.015 104 185 .. 148 234 .. 92 244 .. 0.77 2 ? -0.9 0.0 0.46 9.8e+02 126 163 .. 231 269 .. 220 274 .. 0.72 Alignments for each domain: == domain 1 score: 14.9 bits; conditional E-value: 7e-06 HrcA 104 eeyaellrellellaaa.lsteeaeeeelyvaGtsnl.lrqpefsdlerlrellelLeeqekllkll.. 168 +++++ +r + +++++ ++ +++++l ++G ++ +r +e + +l++ll++L++++kl +ll Ochromonas-sp-CCMP1393_CAMPEP_0190282664 148 ATLDKEVRPVCRKFCQNpMEIFVDDDTKLTLHGLQQYyIRLEEADKNRKLNDLLDALDKNRKLNDLLda 216 56778888888888888888888899*******877516666999999*******************44 PP HrcA 169 .seaseedgvtvrIGsEn 185 + + +++ +++++ +++ Ochromonas-sp-CCMP1393_CAMPEP_0190282664 217 lDXEPQTQPMEIFVDDDT 234 333334446777776666 PP == domain 2 score: -0.9 bits; conditional E-value: 0.46 HrcA 126 aeeeelyvaGtsnl.lrqpefsdlerlrellelLeeqek 163 +++++l ++G ++ +r +e + +l++ll++L+ +++ Ochromonas-sp-CCMP1393_CAMPEP_0190282664 231 DDDTKLTLHGLQQYyIRLEEADKNRKLNDLLDALDFNQV 269 456888888876651566688888999999999975554 PP >> YihI Der GTPase activator (YihI) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 3.2 0.0009 1.9 100 125 .. 187 212 .. 173 216 .. 0.90 2 ? 6.0 4.3 0.0031 6.5 101 125 .. 188 212 .. 187 236 .. 0.79 3 ? 3.7 1.3 0.016 33 100 120 .. 247 267 .. 222 271 .. 0.88 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0009 YihI 100 eLekLEnderLnqLLdrLdegekLsa 125 +Le+ ++ +Ln+LLd+Ld+++kL++ Ochromonas-sp-CCMP1393_CAMPEP_0190282664 187 RLEEADKNRKLNDLLDALDKNRKLND 212 57888899****************86 PP == domain 2 score: 6.0 bits; conditional E-value: 0.0031 YihI 101 LekLEnderLnqLLdrLdegekLsa 125 Le+ ++ +Ln+LLd+Ld+++kL++ Ochromonas-sp-CCMP1393_CAMPEP_0190282664 188 LEEADKNRKLNDLLDALDKNRKLND 212 5666678888888888888888875 PP == domain 3 score: 3.7 bits; conditional E-value: 0.016 YihI 100 eLekLEnderLnqLLdrLdeg 120 +Le+ ++ +Ln+LLd+Ld + Ochromonas-sp-CCMP1393_CAMPEP_0190282664 247 RLEEADKNRKLNDLLDALDFN 267 57888899**********965 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (403 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 608 (0.0409952); expected 296.6 (0.02) Passed bias filter: 446 (0.0300721); expected 296.6 (0.02) Passed Vit filter: 43 (0.00289933); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.24u 0.49s 00:00:00.73 Elapsed: 00:00:02.39 # Mc/sec: 440.15 // Query: Ochromonas-sp-CCMP1393_CAMPEP_0190275488 [L=343] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-30 106.4 0.1 1.7e-30 105.7 0.1 1.3 1 DEAD DEAD/DEAH box helicase 5e-25 87.1 0.1 1.1e-24 86.0 0.0 1.6 1 Helicase_C Helicase conserved C-terminal domain 9.3e-05 22.3 0.0 0.00022 21.0 0.0 1.7 1 ResIII Type III restriction enzyme, res subunit 0.00078 18.5 0.0 0.0014 17.7 0.0 1.4 1 CMS1 U3-containing 90S pre-ribosomal complex subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 105.7 0.1 4.6e-34 1.7e-30 16 166 .. 2 154 .. 1 157 [. 0.91 Alignments for each domain: == domain 1 score: 105.7 bits; conditional E-value: 4.6e-34 EEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHHHHHHHTTT.SSCCEEEETTTS CS xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF DEAD 16 dvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtlnnlkqfkky.pklrvlliiggv 82 d++++a+ G+GKT++f++ ++ l + +++++ treLa q+ ++ ++f ky p+++ + +ggv Ochromonas-sp-CCMP1393_CAMPEP_0190275488 2 DIICQAKSGMGKTAVFVLSTLHLLEPVaGEVHVVVLCHTRELAFQIQKEYERFSKYlPDVKSRVFYGGV 70 89******************99887666677************************************** PP EHHHHHHHHH.TT.-SEEEEEHHHHHHHHHTTSS.HCTTEEEEEEETHHHHHST.TTHHHHHHHHHHSH CS xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF DEAD 83 alardqlsvl.dngvdivvgTpgrlddlvstgkl.nlsqvrllVlDEadrllsq.gfsdqlnqilqilc 148 + + +l+ l + ++ivvgTpgr++dl +++ +ls+v+ +VlDE+drll + ++++++++i + + Ochromonas-sp-CCMP1393_CAMPEP_0190275488 71 NVK-MDLEALkTEVPHIVVGTPGRILDLATKRNAlDLSKVKHFVLDECDRLLAEvDMRKDVQTIFKCT- 137 *88.77777768889*************9997777******************989999******998. PP HCTTSEEEEEESS-THHH CS xxxxxxxxxxxxxxxxxx RF DEAD 149 dgkrlqvivlSATlpkdv 166 + + qv++ SATl+k+v Ochromonas-sp-CCMP1393_CAMPEP_0190275488 138 -PFEKQVMMYSATLDKEV 154 .667**********9887 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.0 0.0 3e-28 1.1e-24 2 78 .] 225 301 .. 224 301 .. 0.98 Alignments for each domain: == domain 1 score: 86.0 bits; conditional E-value: 3e-28 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQr 70 lle+++++++++h++l+q+er ++ f++ ++++lv+t+ ++rGid++ vn Vin+d+p+ ++y++r Ochromonas-sp-CCMP1393_CAMPEP_0190275488 225 LLEDCNFPSICIHSNLKQEERITRFKAFKDFSKRILVSTDLFGRGIDIERVNIVINYDFPDQSDQYLHR 293 6999***************************************************************** PP HTTSSTTT CS Helicase_C 71 iGRtgRag 78 +GR+gR+g Ochromonas-sp-CCMP1393_CAMPEP_0190275488 294 VGRAGRFG 301 ******97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.0 0.0 6.1e-08 0.00022 31 181 .. 6 149 .. 2 152 .. 0.71 Alignments for each domain: == domain 1 score: 21.0 bits; conditional E-value: 6.1e-08 EESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG...GEEEESSS-B---S CS ResIII 31 vmaTGtGKTlvaasliarlar......kflflvprkelleqaleefkkfeskkiefekkniavakkdkl 93 ++ G+GKT v ++l++ ++++l++++el q ++e+ + +++ ++ k+++ Ochromonas-sp-CCMP1393_CAMPEP_0190275488 6 QAKSGMGKTAVFVLSTLHLLEpvagevHVVVLCHTRELAFQIQKEY---------ERFSKYLPDVKSRV 65 6778********9777888889************************.........33344556666667 PP EEEEEHHHHH..................................HTHHHHTTT-SEEEEETGGGTTSTT CS ResIII 94 fgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakk 162 f ++ d e k+++ i++ t ++ ++++ l + + ++ DE+ rl a+ Ochromonas-sp-CCMP1393_CAMPEP_0190275488 66 FYGGVNVKMDLEALKTEVPHIVVGTPGRILDLATKRN----------ALDLSKVKHFVLDECDRLLAEV 124 7777777777777788888888888888887766532..........2334456678888888888888 PP .THHHHH.......---SEEEEEESS CS ResIII 163 kyreile.......fkkafllglTAT 181 ++r+ ++ f ++ ++ +AT Ochromonas-sp-CCMP1393_CAMPEP_0190275488 125 DMRKDVQtifkctpF-EKQVMMYSAT 149 755544445557743.4455666666 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 0.0 3.8e-07 0.0014 158 209 .. 64 116 .. 22 145 .. 0.78 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 3.8e-07 CMS1 158 kLFakHiklkesitylkksrigiavGtpgRiadLl.eeeslsvdeLkrivlDa 209 ++F + +k +++ lk+ i vGtpgRi+dL + ++l ++++k+ vlD Ochromonas-sp-CCMP1393_CAMPEP_0190275488 64 RVFYGGVNVKMDLEALKTEVPHIVVGTPGRILDLAtKRNALDLSKVKHFVLDE 116 5677778888899999999999************98899************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (343 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 428 (0.0288585); expected 296.6 (0.02) Passed bias filter: 338 (0.0227901); expected 296.6 (0.02) Passed Vit filter: 29 (0.00195536); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.20u 0.42s 00:00:00.62 Elapsed: 00:00:02.04 # Mc/sec: 438.89 // Query: Paraphysomonas-imperforata-PA2_CAMPEP_0190484640 [L=431] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-40 137.4 0.0 4.2e-40 137.0 0.0 1.2 1 DEAD DEAD/DEAH box helicase 4.6e-25 87.2 0.2 8.1e-25 86.4 0.1 1.4 1 Helicase_C Helicase conserved C-terminal domain 0.0026 17.6 0.0 0.014 15.2 0.0 2.0 1 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.013 14.1 0.2 0.018 13.6 0.1 1.1 1 RINT1_TIP1 RINT-1 / TIP-1 family 0.096 11.7 0.0 0.17 10.9 0.0 1.4 1 DS Deoxyhypusine synthase Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 137.0 0.0 1.4e-43 4.2e-40 2 167 .. 82 245 .. 81 247 .. 0.94 Alignments for each domain: == domain 1 score: 137.0 bits; conditional E-value: 1.4e-43 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtl 61 piQ+eaip il g+dvl++a+ G+GKT+ f+ip+++++ + ++l+++PtreLa qt Paraphysomonas-imperforata-PA2_CAMPEP_0190484640 82 PIQEEAIPIILAGRDVLARAKNGTGKTGSFIIPCLEKVDPAvNGIQVLMLVPTRELALQTS 142 8*************************************8887777**************** PP HHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 62 nnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrl 122 +k+++k++ ++v++ +gg++l+ d+ +l v+i+vgTpgr++dl +g +ls++++ Paraphysomonas-imperforata-PA2_CAMPEP_0190484640 143 AIVKEIGKHMAVEVMVTTGGTNLR-DDIMRLYSPVHILVGTPGRIHDLADKGIADLSKCNM 202 **********************88.788888677****************9878******* PP EEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 123 lVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvk 167 +V+DEad+lls +f++ l+ ++ ++ + ++q++++SAT+p +vk Paraphysomonas-imperforata-PA2_CAMPEP_0190484640 203 FVMDEADKLLSPEFQPVLEALIAKT--LPTRQILLFSATFPVTVK 245 *********************9998..666**********97766 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.4 0.1 2.7e-28 8.1e-25 3 78 .] 314 389 .. 312 389 .. 0.97 Alignments for each domain: == domain 1 score: 86.4 bits; conditional E-value: 2.7e-28 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprs 63 ++ g++++++h+++ q++r++++++f++g ++ lv+++ + rGid+++vnvVinfd+p++ Paraphysomonas-imperforata-PA2_CAMPEP_0190484640 314 ITELGYSCFYIHAKMRQEDRNRVFHEFRNGATRHLVSSDLFTRGIDIQSVNVVINFDFPKT 374 6789********************************************************* PP HHHHHHHHTTSSTTT CS Helicase_C 64 vtsyiQriGRtgRag 78 ++y++riGR gR+g Paraphysomonas-imperforata-PA2_CAMPEP_0190484640 375 AETYLHRIGRSGRFG 389 *************87 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 4.8e-06 0.014 6 183 .. 82 241 .. 78 242 .. 0.77 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 4.8e-06 HHHHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSH CS ResIII 6 pyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar......kflflvprk 60 p Qeeai +l+ + +l + GtGKT + +++ ++l+lvp++ Paraphysomonas-imperforata-PA2_CAMPEP_0190484640 82 PIQEEAIPIILA-------GRDVLARAKNGTGKTGSFIIPCLEKVDpavngiQVLMLVPTR 135 566677766663.......3667788999******999888888889999*********** PP HHHHHHHHHGGGGTGG...GEEEESSS-B---SEEEEEHHHHH.................. CS ResIII 61 elleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqk 121 el q+ k+ + +++ + ++ + ++ d ++ + i++ t + Paraphysomonas-imperforata-PA2_CAMPEP_0190484640 136 ELALQTSAIV-KE----------IGKHMAVEVMVTTGGTNLRDDIMRLYSPVHILVGTPGR 185 ******9666.22..........23333334445556677777888888899999999999 PP ................HTHHHHTTT-SEEEEETGGGTTSTT.THHHHH......---SEEE CS ResIII 122 lhkaleeeeendeskseslealldefdviiiDEaHrlsakkkyreile......fkkafll 176 +h +++ a l + +++++DEa +l +++ ++ +le + + +l Paraphysomonas-imperforata-PA2_CAMPEP_0190484640 186 IHDLADKG-----------IADLSKCNMFVMDEADKLLSPE-FQPVLEaliaktLPTRQIL 234 99886652...........234567889************9.9999999999998888899 PP EEESS-S CS ResIII 177 glTATpe 183 ++AT++ Paraphysomonas-imperforata-PA2_CAMPEP_0190484640 235 LFSATFP 241 9999985 PP >> RINT1_TIP1 RINT-1 / TIP-1 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.1 5.9e-06 0.018 207 283 .. 262 336 .. 247 358 .. 0.79 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 5.9e-06 HHHHHHHHHHTHHHHHHHHHHHHHT----SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTS CS RINT1_TIP1 207 rsiqlelldqflerLlsaleeyllmtstqesleddaelerlckvlnaaeylekkLedwsdd 267 +++l+ + qf + + + + l +t s+ + ++ + +c++ n +e+l kk++++ Paraphysomonas-imperforata-PA2_CAMPEP_0190484640 262 DELTLRGITQFYAFVEERQKVHCL--NTLFSKLEINQSIIFCNSVNRVELLAKKITELGYS 320 566777777888888888666666..7788889999999********************** PP HHHH............ CS RINT1_TIP1 268 vfFlqervkenkdkgn 283 f++++++++ + + + Paraphysomonas-imperforata-PA2_CAMPEP_0190484640 321 CFYIHAKMRQEDRNRV 336 *********9988765 PP >> DS Deoxyhypusine synthase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.0 5.8e-05 0.17 55 134 .. 143 226 .. 116 240 .. 0.86 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 5.8e-05 HHHHHHHHTT--SEEEE-HH.HHHHHHHTTTS-.-EE--TT--HHHHHHTTEEEET..TEE CS DS 55 eiirylvqekkvdalvttag.gveedlikclgp.tylgdfevddkeLrekginRig..nll 111 i++ + ++ v+++vtt+g ++ +d+++ ++p ++l + ++L++kgi + n++ Paraphysomonas-imperforata-PA2_CAMPEP_0190484640 143 AIVKEIGKHMAVEVMVTTGGtNLRDDIMRLYSPvHILVGTPGRIHDLADKGIADLSkcNMF 203 58899999**********87589*********9777888899999*******988544999 PP EEHHHHHHHHHHHHHHHHHHHHH CS DS 112 vpnenyikfeeylveilekllee 134 v +e+ + + +++le l+ + Paraphysomonas-imperforata-PA2_CAMPEP_0190484640 204 VMDEADKLLSPEFQPVLEALIAK 226 99999999999999999988765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (431 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 294 (0.0198233); expected 296.6 (0.02) Passed bias filter: 257 (0.0173286); expected 296.6 (0.02) Passed Vit filter: 24 (0.00161823); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.23u 0.35s 00:00:00.57 Elapsed: 00:00:01.63 # Mc/sec: 690.22 // Query: Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 [L=510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-30 105.2 4.6 6.8e-30 103.7 1.3 2.2 2 DEAD DEAD/DEAH box helicase 3.6e-15 55.5 0.0 9.6e-15 54.2 0.0 1.8 1 Helicase_C Helicase conserved C-terminal domain 6.3e-05 22.8 1.1 8.2e-05 22.5 0.1 1.7 2 ResIII Type III restriction enzyme, res subunit 0.0018 17.9 0.0 0.0042 16.6 0.0 1.6 1 AAA_30 AAA domain ------ inclusion threshold ------ 0.039 13.9 1.0 0.092 12.7 0.7 1.6 1 RRM_2 RNA recognition motif 2 0.13 12.0 5.0 0.28 10.8 3.4 1.6 1 Pox_C7_F8A Poxvirus C7/F8A protein Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 103.7 1.3 2.8e-33 6.8e-30 1 163 [. 113 280 .. 113 286 .. 0.81 2 ? 1.9 0.0 0.053 1.3e+02 55 102 .. 347 391 .. 323 395 .. 0.70 Alignments for each domain: == domain 1 score: 103.7 bits; conditional E-value: 2.8e-33 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqt 60 t+iQa++ip l+ ++++++a+ GsGKT+af i +i++l +t + +a+++aPtr La q Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 113 TQIQAATIPVTLQRRNIVAQAQAGSGKTIAFTIGIINQLDTTqQCVQAICIAPTRHLAGQL 173 79*************************************9986666*************** PP HHHHHHHTTT...SSCCEEEETTTSEHHHHHHHHH..TT.-SEEEEEHHHHHHHHHTTSSH CS xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 61 lnnlkqfkky...pklrvlliiggvalardqlsvl..dngvdivvgTpgrlddlvstgkln 116 ++++ +++ p +++ l +++ + + d+ ++++vvgT g++++ ++++ ++ Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 174 MKDAIVPLSKymdPPCNIELAVSSENPK-DKGPEKgaTCTAHVVVGTAGTVIKWLKNKYIT 233 **98444444366667777777766655.44444446556****************97779 PP CTTEEEEEEETHHHHHST..TTHHHHHHHHHHSHHCT.TSEEEEEESS-T CS xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF DEAD 117 lsqvrllVlDEadrllsq..gfsdqlnqilqilcdgk.rlqvivlSATlp 163 s v+++V+DEad++ ++ g s q+ qi ++l + ++q++++SAT p Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 234 ASTVKIFVVDEADEMVKEtkGVSTQVIQIKNKL---NmNIQTLFFSATYP 280 999**************5444555555555555...336*********98 PP == domain 2 score: 1.9 bits; conditional E-value: 0.053 HHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH..TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF DEAD 55 eLaeqtlnnlkqfkkypklrvlliiggvalardqlsvl..dngvdivvgT 102 + + +++++l++ k+ + +i+++ a a d++ l +n+++++++T Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 347 AQCDEVAKKLRE----DKFTCSVIHSKIANA-DEEFELfrQNKTKVLIST 391 444444433333....567899999999988.66666679999*****99 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.2 0.0 3.9e-18 9.6e-15 1 78 [] 354 442 .. 354 442 .. 0.89 Alignments for each domain: == domain 1 score: 54.2 bits; conditional E-value: 3.9e-18 HHHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSS. CS Helicase_C 1 lllekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl. 60 ++l++ ++ + ++h+ + + +e +e f+++k+kvl++t++++rGid+p v Vin+d+ Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 354 KKLREDKFTCSVIHS--KIANADEEFELFRQNKTKVLISTDILSRGIDVPTVAIVINYDAp 412 5789999********..77888899***********************************7 PP ............SSSHHHHHHHHTTSSTTT CS Helicase_C 61 ............prsvtsyiQriGRtgRag 78 + + y +ri R+ R+g Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 413 rffderagrftdKANCEIYSHRIARCCRMG 442 777777777777777777*********986 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.5 0.1 3.3e-08 8.2e-05 22 182 .. 113 279 .. 87 281 .. 0.73 2 ? -3.5 0.1 3.1 7.7e+03 103 123 .. 354 374 .. 329 392 .. 0.50 Alignments for each domain: == domain 1 score: 22.5 bits; conditional E-value: 3.3e-08 ............TTSEEEEEESTTSTHHHHHHH.HHHHH-S.....-EEEEESSHHHHHHH CS ResIII 22 e..........dekkrglivmaTGtGKTlvaas.liarlar.....kflflvprkelleqa 66 ++++++ ++ G+GKT+ + +i +l + +++ ++p+++l q+ Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 113 TqiqaatipvtLQRRNIVAQAQAGSGKTIAFTIgIINQLDTtqqcvQAICIAPTRHLAGQL 173 1333334444446899************988744899998899*****************9 PP HHHG....GGGTGG...GEEEESSS-B---SEEEEEHHHHH.................... CS ResIII 67 leef....kkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklh 123 +++ k + +++ + + ++ e+ k+ e++ + ++ +++ t+ ++ Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 174 MKDAivplSK---------YMDPPCNIELAVSSENPKDKGP-EKGATCTAHVVVGTAGTVI 224 9776233333.........3333444445554555555554.6777889999999999999 PP ..............HTHHHHTTT-SEEEEETGGGTTSTT...THHHHH.....---SEEEE CS ResIII 124 kaleeeeendeskseslealldefdviiiDEaHrlsakkk..yreile.....fkkafllg 177 k l++ + + +++++DEa + +++k + ++++ +++ l Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 225 KWLKN-----------KYITASTVKIFVVDEADEMVKETKgvSTQVIQiknklNMNIQTLF 274 99886...........344555678*****************7777776667766666799 PP EESS- CS ResIII 178 lTATp 182 ++AT Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 275 FSATY 279 99996 PP == domain 2 score: -3.5 bits; conditional E-value: 3.1 H.................... CS ResIII 103 dkeekkkkdkeiilttiqklh 123 +k +++k ++++i ++i + Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 354 KKLREDKFTCSVIHSKIANAD 374 333333333333333333333 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.0 1.7e-06 0.0042 4 103 .. 112 246 .. 110 259 .. 0.74 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 1.7e-06 AAA_30 4 aeQkeaveavltsgdrvavvqGpAGtGKttv..lkalrealeaag.krviglAptgkaakv 61 + Q +a++ +t ++r v q+ AG+GKt + ++ ++++ + ++ + i +Apt a + Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 112 PTQIQAATIPVTLQRRNIVAQAQAGSGKTIAftIGIINQLDTTQQcVQAICIAPTRHLAGQ 172 56888888888899999************75116679999888878*************** PP AAA_30 62 Leee....................................lgiearTiasllerldkaeae 86 L ++ + + T +++++l+++ + Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 173 LMKDaivplskymdppcnielavssenpkdkgpekgatctAHVVVGTAGTVIKWLKNKYIT 233 9999899999888888888888888888888877776666333333333334444443222 PP AAA_30 87 grkeldaktllvvDEAg 103 + +++vvDEA Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 234 ----ASTVKIFVVDEAD 246 ....5556699999985 PP >> RRM_2 RNA recognition motif 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.7 3.7e-05 0.092 5 86 .. 223 311 .. 219 317 .. 0.82 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 3.7e-05 RRM_2 5 liknipnky....tkk.mllaaideknkgtydflylpidfknkcnvg..yafinlvepkki 58 +ik + nky t k +++++ de k t i++knk n+ f p i Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 223 VIKWLKNKYitasTVKiFVVDEADEMVKETKGVSTQVIQIKNKLNMNiqTLFFSATYPPAI 283 78899999943333332568999********************98762156899999**** PP RRM_2 59 vafqkafngkkwekfnsekvaslayari 86 +++ ++ +g++ ++ +kv++l +i Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 284 LTLANTLVGENAITIKVKKVSELILDKI 311 ********************99987766 PP >> Pox_C7_F8A Poxvirus C7/F8A protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 3.4 0.00011 0.28 7 144 .. 237 375 .. 231 379 .. 0.83 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.00011 Pox_C7_F8A 7 ldiflvdedlslknvellkGdsyGCtiklkvnseKklkflvilkpdwseidevkplrmkln 67 ++if+vde v+ +kG s +i++k++ + +++ l+ + +i + + + n Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 237 VKIFVVDEAD--EMVKETKGVSTQ-VIQIKNKLNMNIQTLFFSATYPPAILTLANTLVGEN 294 6788888843..446778888864.79999999999999999999889999999999**** PP Pox_C7_F8A 68 gkkvdvelvkeslveviYsasltieskstvelfsdtedefkeeYPtikintekkkYkv... 125 +++v++v+e ++ +i++++++ s v++ d+ + f+ + ++ +t+ + +v Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 295 AITIKVKKVSELILDKIFQVKIECRGRSKVDILEDVYSYFTIQQSMVFCETKAQCDEVakk 355 *****************************************99999988888776655111 PP Pox_C7_F8A 126 .kdkgrtyvriespildsdk 144 ++++ t+ i+s i + d+ Paraphysomonas-imperforata-PA2_CAMPEP_0190475086 356 lREDKFTCSVIHSKIANADE 375 15667789999999998886 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (510 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 728 (0.0490864); expected 296.6 (0.02) Passed bias filter: 403 (0.0271728); expected 296.6 (0.02) Passed Vit filter: 27 (0.00182051); expected 14.8 (0.001) Passed Fwd filter: 6 (0.000404558); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.28u 0.49s 00:00:00.77 Elapsed: 00:00:02.27 # Mc/sec: 586.46 // Query: Paraphysomonas-imperforata-PA2_CAMPEP_0190474956 [L=767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-42 144.9 9.0 2.2e-42 144.3 0.0 3.1 3 DEAD DEAD/DEAH box helicase 3.1e-26 91.0 0.2 1.8e-25 88.6 0.1 2.3 1 Helicase_C Helicase conserved C-terminal domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 144.3 0.0 3e-46 2.2e-42 1 169 [] 124 309 .. 124 309 .. 0.92 2 ! 5.1 0.0 0.0019 14 47 102 .. 361 418 .. 327 426 .. 0.72 3 ? -4.1 2.6 1.3 9.4e+03 56 92 .. 620 655 .. 613 676 .. 0.73 Alignments for each domain: == domain 1 score: 144.3 bits; conditional E-value: 3e-46 -HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT.............. CS xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.............. RF DEAD 1 tpiQaeaiplil.gggdvlvaaeTGsGKTlaflipviqillet.kdq.............. 45 tpiQ++++pl l + dv+++a+TGsGKT afl+p+i +++ + ++ Paraphysomonas-imperforata-PA2_CAMPEP_0190474956 124 TPIQRHCVPLSLaKTFDVMACAQTGSGKTVAFLVPLITQITASlASKkkdrgrapalaasp 184 89**********779**********************9998876666899*********** PP EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 kalivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrl 106 aliv+PtreLa q+ ++ +++ + +++++++gg + +ql l +gvdi+++Tpgrl Paraphysomonas-imperforata-PA2_CAMPEP_0190474956 185 SALIVSPTRELALQIELEAHKLTYQSPIQCVCVYGGASST-QQLALLAKGVDILIATPGRL 244 ***********************9999**********966.999999889*********** PP HHHHHTTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCT..TSEEEEEESS-THH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF DEAD 107 ddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgk..rlqvivlSATlpkd 165 d +s++ ++ls+ + VlDEadr+l++gf++q++qi ++ + + ++ ++++SAT+p + Paraphysomonas-imperforata-PA2_CAMPEP_0190474956 245 NDFLSQRLITLSRTHFCVLDEADRMLDMGFEPQIRQICEQHDLPPasSRNTLMFSATFPVE 305 *****8655*****************************995444444589*********88 PP HHHH CS xxxx RF DEAD 166 vkkl 169 v+k+ Paraphysomonas-imperforata-PA2_CAMPEP_0190474956 306 VQKI 309 8875 PP == domain 2 score: 5.1 bits; conditional E-value: 0.0019 EEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 47 alivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 ++i + + a n+l + lrv +i+g+ +++++++ l d++ d++v+T Paraphysomonas-imperforata-PA2_CAMPEP_0190474956 361 TIIFCQKKHVATWLKNQLMRAHG-IALRVDAIHGDRSQSQREHA-LelfrDGKLDVLVAT 418 55555555555555555555444.479*******9996644444.3489**********9 PP == domain 3 score: -4.1 bits; conditional E-value: 1.3 HHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 56 Laeqtlnnlkqfkkypklrvlliiggvalardqlsvl 92 ++q+ ++ kq+ ++p+ +++ i++++++ +q+++ Paraphysomonas-imperforata-PA2_CAMPEP_0190474956 620 SMKQQSRRSKQLQSKPQDQTVPQIQQSKKQ-QQQEQT 655 578888999999999888888888877755.444444 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.6 0.1 2.4e-29 1.8e-25 8 78 .] 386 459 .. 380 459 .. 0.95 Alignments for each domain: == domain 1 score: 88.6 bits; conditional E-value: 2.4e-29 S-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHH.. CS Helicase_C 8 ikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvts.. 66 ++v ++hg+ +q++re+ le f++gk +vlvat+va+rG+d+p++n+Vi+fdlp sv++ Paraphysomonas-imperforata-PA2_CAMPEP_0190474956 386 LRVDAIHGDRSQSQREHALELFRDGKLDVLVATDVAARGLDVPGINHVIQFDLPVSVQDfd 446 57899************************************************99988888 PP .HHHHHTTSSTTT CS Helicase_C 67 .yiQriGRtgRag 78 y++riGRtgRag Paraphysomonas-imperforata-PA2_CAMPEP_0190474956 447 nYVHRIGRTGRAG 459 8**********97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (767 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 2284 (0.154002); expected 296.6 (0.02) Passed bias filter: 445 (0.0300047); expected 296.6 (0.02) Passed Vit filter: 167 (0.0112602); expected 14.8 (0.001) Passed Fwd filter: 43 (0.00289933); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.75u 0.52s 00:00:01.27 Elapsed: 00:00:02.38 # Mc/sec: 841.23 // Query: Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 [L=409] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-42 144.1 1.4 3.9e-42 143.5 0.4 1.6 2 DEAD DEAD/DEAH box helicase 1.9e-27 94.9 0.7 7.7e-27 92.9 0.3 2.1 2 Helicase_C Helicase conserved C-terminal domain 2.3e-05 24.0 1.7 4.2e-05 23.2 0.4 2.0 2 AAA_19 Part of AAA domain 0.0021 17.9 0.1 0.0037 17.1 0.1 1.5 1 ResIII Type III restriction enzyme, res subunit 0.006 16.1 0.6 0.023 14.2 0.3 1.9 2 AAA_30 AAA domain ------ inclusion threshold ------ 0.015 14.4 0.0 0.05 12.6 0.0 1.8 2 CMS1 U3-containing 90S pre-ribosomal complex subuni 0.02 13.3 0.0 1.2 7.4 0.0 2.2 2 DUF1253 Protein of unknown function (DUF1253) 0.03 13.4 0.0 0.098 11.7 0.0 1.8 2 tRNA-synt_1b tRNA synthetases class I (W and Y) 0.049 13.2 0.0 0.082 12.5 0.0 1.4 1 Helicase_RecD Helicase 0.091 12.9 0.1 0.47 10.6 0.1 2.1 1 AAA_22 AAA domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 143.5 0.4 2.7e-45 3.9e-42 2 164 .. 61 222 .. 60 226 .. 0.95 2 ? -2.1 0.0 1.5 2.2e+03 69 102 .. 296 332 .. 269 347 .. 0.70 Alignments for each domain: == domain 1 score: 143.5 bits; conditional E-value: 2.7e-45 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtl 61 +iQ++a++ l+g+dv+++a+ G+GKT+ f+i ++q+l + k+ + l++aPtreLa+q++ Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 61 AIQQRAVKPTLTGRDVIAQAQSGTGKTATFAIGILQTLDVQvKECQSLVLAPTRELAQQIV 121 69**************************************99999**************** PP HHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 62 nnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrl 122 + ++++++ +++ +++++gg+a + d+ + l++gv++vvgTpgr+ d+++++ l+l+ vr+ Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 122 KVITSLGDFMNIAIHACVGGTAVR-DDIRTLQEGVHVVVGTPGRVYDMIQRRALRLEAVRM 181 **********************77.999999999*****************999******* PP EEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-T.H CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF DEAD 123 lVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlp.k 164 +VlDEad++ls gf++q++++ + + + +q++++SAT+p + Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 182 FVLDEADEMLSRGFKEQIYDVFKYMPET--VQCCIFSATMPlE 222 ************************9555..**********944 PP == domain 2 score: -2.1 bits; conditional E-value: 1.5 TTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 69 kypklrvlliiggvalardqlsvl....dngvdivvgT 102 + +++ v ++g++++++++l + ++ ++++++T Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 296 QAHDFTVSSMHGDMDQRERDL-IMrefrSGSTRVLITT 332 335677888888888553333.3346777777777776 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 0.0 1.3 2e+03 11 38 .. 213 239 .. 208 242 .. 0.78 2 ! 92.9 0.3 5.2e-30 7.7e-27 3 78 .] 295 370 .. 293 370 .. 0.96 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 1.3 EEESTTSTHHHHHHHHHHHHTTSSSEEE CS Helicase_C 11 ailhgelpqnereeileqfnagkskvlv 38 + + + +++ e +e+ ++f ++ ++lv Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 213 C-IFSATMPLEVLEVTSKFMRDPIRILV 239 4.445578888999999**999999998 PP == domain 2 score: 92.9 bits; conditional E-value: 5.2e-30 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprs 63 +++ ++ v +hg++ q+er+ i+++f++g+++vl++t+ ++rGid+++v++Vin+dlp++ Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 295 MQAHDFTVSSMHGDMDQRERDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPTN 355 56778999***************************************************** PP HHHHHHHHTTSSTTT CS Helicase_C 64 vtsyiQriGRtgRag 78 +++yi+riGR gR+g Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 356 RENYIHRIGRSGRFG 370 *************87 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.2 0.4 2.9e-08 4.2e-05 2 62 .. 66 124 .. 65 152 .. 0.82 2 ? -2.0 0.0 2 3e+03 6 20 .. 150 163 .. 142 164 .. 0.72 Alignments for each domain: == domain 1 score: 23.2 bits; conditional E-value: 2.9e-08 AAA_19 2 aveaalagnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraakrlser 61 av+ +l+g+ +++ ++ GtGKT+t a +i + l ++ ++l++apt++ a+++ ++ Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 66 AVKPTLTGRDVIA-QAQSGTGKTATFAIGILQTL--DVQVkECQSLVLAPTRELAQQIVKV 123 6776667999999.********************..44666888**************888 PP AAA_19 62 l 62 + Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 124 I 124 7 PP == domain 2 score: -2.0 bits; conditional E-value: 2 AAA_19 6 alagnpllvvtGgPG 20 +l+ +++ vv G PG Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 150 TLQ-EGVHVVVGTPG 163 444.89999999999 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 0.1 2.5e-06 0.0037 8 82 .. 63 135 .. 57 218 .. 0.82 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 2.5e-06 HHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHH CS ResIII 8 QeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar......kflflvprkel 62 Q++a++ +l + ++ ++ GtGKT + a i++ + + l+l+p++el Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 63 QQRAVKPTLT-------GRDVIAQAQSGTGKTATFAIGILQTLDvqvkecQSLVLAPTREL 116 5566666662.......367889999**********6555555567778************ PP HHHHHHHGGGGTGG...GEE CS ResIII 63 leqaleefkkfeskkiefek 82 +q + + + ++++++ Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 117 AQQIVKVI-TSLGDFMNIAI 135 ***99888.44455555555 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.2 0.3 1.6e-05 0.023 4 107 .. 61 192 .. 59 204 .. 0.65 2 ? -2.3 0.0 1.8 2.6e+03 50 84 .. 279 313 .. 275 327 .. 0.80 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 1.6e-05 AAA_30 4 aeQkeaveavltsgdrvavvqGpAGtGKttvlka.lrealeaa..gkrviglAptgkaakv 61 a Q++av+ +lt +d ++ q+ GtGKt + + + ++l+ + + + ++lApt + a++ Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 61 AIQQRAVKPTLTGRD--VIAQAQSGTGKTATFAIgILQTLDVQvkECQSLVLAPTRELAQQ 119 5699******99998..88999******98876545555555422589999*****99999 PP AAA_30 62 Leee....lgiearTiasllerldkaeaegrke.......................ldakt 95 + + + +i++ ++ ++ +++ + + l+a + Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 120 IVKVitslGDFMNIAIHACVGGTAVRDDIRTLQegvhvvvgtpgrvydmiqrralrLEAVR 180 8877333311333444444444444332222224555566666666667666666677777 PP AAA_30 96 llvvDEAgmvdt 107 ++v+DEA + + Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 181 MFVLDEADEMLS 192 888888876655 PP == domain 2 score: -2.3 bits; conditional E-value: 1.8 AAA_30 50 iglAptgkaakvLeeelgiearTiasllerldkae 84 i++ t + ++ L+e+++++ T++s+ ++ d++e Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 279 IIYCNTRRKVDWLTEQMQAHDFTVSSMHGDMDQRE 313 56677888889999999999999999888888865 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 3.3e-05 0.05 167 209 .. 145 186 .. 142 195 .. 0.89 2 ? -2.4 0.0 1.3 2e+03 31 69 .. 258 298 .. 256 306 .. 0.75 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 3.3e-05 CMS1 167 kesitylkksrigiavGtpgRiadLleeeslsvdeLkrivlDa 209 +++i +l++ + + vGtpgR+ d+++ +l ++ ++ vlD Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 145 RDDIRTLQE-GVHVVVGTPGRVYDMIQRRALRLEAVRMFVLDE 186 677888876.48899**************************96 PP == domain 2 score: -2.4 bits; conditional E-value: 1.3 CMS1 31 rkkeklketqDveag..lneavarmdpelLadylasklkrf 69 r++ kl + D + +++a++ + + +d+l+++++ Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 258 REEWKLETLCDLYGTltITQAIIYCNTRRKVDWLTEQMQAH 298 66778877778876666789999999999999999988765 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 0.0 0.011 16 35 60 .. 102 127 .. 78 134 .. 0.86 2 ? 7.4 0.0 0.00084 1.2 302 387 .. 277 360 .. 261 371 .. 0.85 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.011 DUF1253 35 ftrpkvLillpfrniakevvdllikl 60 + ++ L+l p+r+ a+++v+ +++l Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 102 VKECQSLVLAPTRELAQQIVKVITSL 127 566788***************99986 PP == domain 2 score: 7.4 bits; conditional E-value: 0.00084 DUF1253 302 gvlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkgrkkiLLvteRlhf 362 + +i+ + + +++ +++++++ +++ ++++ + + F +g++++L++t+ l Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 277 QAIIYCNTRRKVDWLTEQMQAHDFTVSSMHGDMDQRERDLIMREFRSGSTRVLITTDLLA- 336 5566666655555678899999999999****************************9776. PP DUF1253 363 yrRykikgvkkvifyslPefpefYs 387 r + +++v+ vi y lP+++e Y Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 337 -RGIDVQQVSLVINYDLPTNRENYI 360 .89*****************99886 PP >> tRNA-synt_1b tRNA synthetases class I (W and Y) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.0 1.4 2.1e+03 217 250 .. 223 257 .. 219 265 .. 0.80 2 ? 11.7 0.0 6.6e-05 0.098 41 110 .. 300 371 .. 285 385 .. 0.82 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 1.4 HHHHHHHSHCSTTC.SHHHHHHHHHCHHHCHHHHH CS tRNA-synt_1b 217 vkkkiqkaitdsde.evrkllklktelsnelieil 250 v ++ +k+++d+ + v+k++ ++ +++ ++i i Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 223 VLEVTSKFMRDPIRiLVKKDELTLEGIKQFFIAIE 257 56778899******999999999999998777665 PP == domain 2 score: 11.7 bits; conditional E-value: 6.6e-05 EEEEHHHHCTTTTT..SSHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEECHHHHTCH.HHH CS tRNA-synt_1b 41 fliaDltAligdps.kaeerklrkreeelenakaqlakgldpekaeivlqsewlehl.ela 99 f + +++ +++ + + +r++r+ ++++ + +la+g+d +++++v++++ + + +++ Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 300 FTVSSMHGDMDQRErDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPTNReNYI 360 567777888888887888999999999999999********************98764788 PP HHHHHHCTCHC CS tRNA-synt_1b 100 ellrdlgklgs 110 + + g++g+ Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 361 HRIGRSGRFGR 371 88888887765 PP >> Helicase_RecD Helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.0 5.5e-05 0.082 3 51 .. 79 129 .. 77 193 .. 0.73 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 5.5e-05 Helicase_RecD 3 tAdRGRGKSaalGlalaal..vaegksnilvtapskenvktlfeflekgle 51 +A+ G+GK+a+ ++ + + v+ ++++ lv ap++e ++++++ +++ + Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 79 QAQSGTGKTATFAIGILQTldVQVKECQSLVLAPTRELAQQIVKVITSLGD 129 6999*****98766665551156666*****************99976544 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.1 0.00031 0.47 12 120 .. 81 215 .. 72 226 .. 0.57 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00031 AAA_22 12 esGvGKTtlarrlaeqldevaeaaekarvvfveapsstspkellkkllralglpakg.... 68 +sG+GKT + +q + +v ++ + +el++++++ + + + Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 81 QSGTGKTATFAIGILQTL-------DVQVKECQSLVLAPTRELAQQIVKVITSLGDFmnia 134 677777766554444432.......333333333333344444444444444444444444 PP AAA_22 69 ........................rltteelleallralrrrrv.glliiDEaqh.Lr... 100 +t +++++++r + r + +++++DEa+ L+ Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 135 ihacvggtavrddirtlqegvhvvVGTPGRVYDMIQRRALRLEAvRMFVLDEADEmLSrgf 195 444444444445555555555556667888889998888888888**********774544 PP AAA_22 101 seelleelrdlldetgvklv 120 +e+ ++ ++ + ++ ++ + Paraphysomonas-imperforata-PA2_CAMPEP_0190464522 196 KEQIYDVFKYMPETVQCCIF 215 46666666666655555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (409 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 537 (0.0362079); expected 296.6 (0.02) Passed bias filter: 462 (0.031151); expected 296.6 (0.02) Passed Vit filter: 41 (0.00276448); expected 14.8 (0.001) Passed Fwd filter: 10 (0.000674263); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 0.26u 0.52s 00:00:00.78 Elapsed: 00:00:02.12 # Mc/sec: 503.60 // Query: Paraphysomonas-imperforata-PA2_CAMPEP_0190472616 [L=244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.4e-18 65.5 0.0 2.3e-17 63.5 0.0 2.0 1 Ribonuclease_3 Ribonuclease III domain 5.5e-16 58.6 0.0 2.3e-15 56.6 0.0 1.8 2 Ribonucleas_3_3 Ribonuclease-III-like 1.9e-08 34.7 0.6 2.3e-07 31.2 0.4 2.3 1 dsrm Double-stranded RNA binding motif ------ inclusion threshold ------ 0.1 12.3 0.1 0.26 11.0 0.0 1.6 2 V-set_CD47 CD47 immunoglobulin-like domain Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 63.5 0.0 6.1e-21 2.3e-17 2 113 .. 13 100 .. 12 101 .. 0.89 Alignments for each domain: == domain 1 score: 63.5 bits; conditional E-value: 6.1e-21 HHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBHHHH CS Ribonuclease_3 2 rLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylresef 62 rLefLGD++lk + ++ylfe +p++ eg+lsk r+++ +ne la ++ lgl+s+++ Paraphysomonas-imperforata-PA2_CAMPEP_0190472616 13 RLEFLGDSILKTIQSKYLFEANPEWGEGQLSKTRAQMENNEQLALWCRHLGLDSHIK---- 69 9********************************************************.... PP HHSTT--TSSSSS.SC...............TSHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 63 dppknwlplnkdlangkgrqsisydlkeqsiadkvladvvEAliGaiylds 113 +++++ g+ + ++ ++v+EA++Gai++d+ Paraphysomonas-imperforata-PA2_CAMPEP_0190472616 70 --------CGRSIERGTPGWV------------NICSQVFEAFLGAIWIDC 100 ........4444444443444............69***************9 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 56.6 0.0 6.2e-19 2.3e-15 20 113 .. 9 102 .. 1 109 [. 0.90 2 ? -0.7 0.0 0.34 1.3e+03 46 71 .. 191 216 .. 179 239 .. 0.77 Alignments for each domain: == domain 1 score: 56.6 bits; conditional E-value: 6.2e-19 Ribonucleas_3_3 20 gyNerLefLGdavLelvvseyllekakk.degeltkklaslvseeslaeiakelgLgkvlr 79 + + rLefLGd++L+ + s+yl+e ++ eg+l+k++a++ ++e+la + lgL+++++ Paraphysomonas-imperforata-PA2_CAMPEP_0190472616 9 KGYDRLEFLGDSILKTIQSKYLFEANPEwGEGQLSKTRAQMENNEQLALWCRHLGLDSHIK 69 5589*******************9966549******************************* PP Ribonucleas_3_3 80 lrkgeeetessgrekvladaleAliGAiyldkGa 113 +++ + e ++ g +++++++eA++GAi +d + Paraphysomonas-imperforata-PA2_CAMPEP_0190472616 70 CGR-SIERGTPGWVNICSQVFEAFLGAIWIDCEF 102 *88.7889999******************99766 PP == domain 2 score: -0.7 bits; conditional E-value: 0.34 Ribonucleas_3_3 46 kkdegeltkklaslvseeslaeiake 71 kd++e+ k ++++v++e+ + a + Paraphysomonas-imperforata-PA2_CAMPEP_0190472616 191 VKDDVEEDKARDRIVRHETTGRGATK 216 56788899999999999987776655 PP >> dsrm Double-stranded RNA binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.2 0.4 6.1e-11 2.3e-07 1 64 [. 126 228 .. 126 231 .. 0.89 Alignments for each domain: == domain 1 score: 31.2 bits; conditional E-value: 6.1e-11 HHHHHHH.HHHHTT........SCCEEEEEEEESSTSSSEEEEEEEEE............. CS dsrm 1 pkskLqe.lcqkkg........kppnyeyvseegpphslkkFtvtvkv............. 39 +kskLqe l + + p ye+v++egpph ++F+vt+ v Paraphysomonas-imperforata-PA2_CAMPEP_0190472616 126 YKSKLQEsLQKAFSsadlskldCLPKYEEVHREGPPHQ-PVFVVTCSVitveqgncldfdw 185 7999999888888899999999899************9.9********999********** PP ...............TTEEEE...EEEESSHHHHHHHHHHHHH CS dsrm 40 ...............ngklyg...tGvgssKKeAeqlAAekAL 64 +++++ tG g +KK+Ae AA ++L Paraphysomonas-imperforata-PA2_CAMPEP_0190472616 186 dmdelvkddveedkaRDRIVRhetTGRGATKKKAETDAAYNML 228 9999999999988875555557779999*************99 PP >> V-set_CD47 CD47 immunoglobulin-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 7e-05 0.26 30 81 .. 96 146 .. 89 149 .. 0.82 2 ? -2.5 0.0 1.1 3.9e+03 31 54 .. 167 188 .. 165 211 .. 0.57 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 7e-05 EEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEE..EGGGTT-BEGGG CS V-set_CD47 30 vvipCdvdnleyknisevyvkWkfknkdififnktekkst..sesfpsaklsel 81 + i+C+ d +++ +y++W++ ++i i n ++k +++f+sa ls+l Paraphysomonas-imperforata-PA2_CAMPEP_0190472616 96 IWIDCEFD---FQEMCGLYMSWELPAREIAIINYKSKLQEslQKAFSSADLSKL 146 77889884...477889**********9999998776544359*******9887 PP == domain 2 score: -2.5 bits; conditional E-value: 1.1 EE--BBSS---SSGGGEEEEEEET CS V-set_CD47 31 vipCdvdnleyknisevyvkWkfk 54 v+ C+v +e+ n + W ++ Paraphysomonas-imperforata-PA2_CAMPEP_0190472616 167 VVTCSVITVEQGNC--LDFDWDMD 188 56666655555544..55556555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (244 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 381 (0.0256894); expected 296.6 (0.02) Passed bias filter: 330 (0.0222507); expected 296.6 (0.02) Passed Vit filter: 21 (0.00141595); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.20u 0.39s 00:00:00.59 Elapsed: 00:00:01.43 # Mc/sec: 445.40 // Query: Paraphysomonas-imperforata-PA2_CAMPEP_0190489260 [L=604] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.4e-45 152.4 0.0 6.4e-44 149.4 0.0 2.0 2 DEAD DEAD/DEAH box helicase 9.1e-27 92.7 0.0 3e-26 91.1 0.0 1.9 2 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.11 12.3 0.0 0.23 11.2 0.0 1.6 1 ResIII Type III restriction enzyme, res subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 149.4 0.0 1.3e-47 6.4e-44 1 169 [] 196 376 .. 196 376 .. 0.95 2 ? 0.7 0.0 0.064 3.2e+02 70 102 .. 446 481 .. 431 491 .. 0.76 Alignments for each domain: == domain 1 score: 149.4 bits; conditional E-value: 1.3e-47 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT.............EE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.............xx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq.............ka 47 tp+Q+ +ip +g d++++a+TGsGKT+ fl p+i+ +l+t a Paraphysomonas-imperforata-PA2_CAMPEP_0190489260 196 TPVQKFSIPIGSSGADMMACAQTGSGKTAGFLFPMISSMLQTgA-LptpsssssrgvypTA 255 79*******999*************************9999743.269************* PP EEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 48 livaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrldd 108 li+aPtreLa q++++ ++f+ +++r l+++gg ++ +ql+ ld+g+d++v+Tpgrl+d Paraphysomonas-imperforata-PA2_CAMPEP_0190489260 256 LILAPTRELASQIYDESQKFLYCTGIRSLCVYGGANIH-NQLKDLDRGADLLVATPGRLVD 315 *********************99*************99.********************** PP HHHTTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 109 lvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkkl 169 l+++g+ +l +r+l lDEadr+l++gf++q+++i+q+ +++q+ ++SAT+p+d+++l Paraphysomonas-imperforata-PA2_CAMPEP_0190489260 316 LIERGRVKLDIIRFLCLDEADRMLDMGFEPQIRRIVQQEGMSQDRQTFMFSATFPTDIQRL 376 *****99*******************************777778***********999875 PP == domain 2 score: 0.7 bits; conditional E-value: 0.064 TSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 70 ypklrvlliiggvalardqlsvl....dngvdivvgT 102 +k+ + i+g+++++ ++++ l ++ + i+v+T Paraphysomonas-imperforata-PA2_CAMPEP_0190489260 446 RHKFPASSIHGDKSQR-EREESLrlfkSGMTPILVAT 481 4678889999999955.55555557999999****99 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.0 0.93 4.6e+03 2 28 .. 275 301 .. 274 305 .. 0.79 2 ! 91.1 0.0 6e-30 3e-26 4 78 .] 445 519 .. 442 519 .. 0.95 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 0.93 HHHHTTS-EEEESTTSTHHHHHHHHHH CS Helicase_C 2 llekkgikvailhgelpqnereeileq 28 +l gi++++++g+ + ++++ l++ Paraphysomonas-imperforata-PA2_CAMPEP_0190489260 275 FLYCTGIRSLCVYGGANIHNQLKDLDR 301 6667899*******9988888877665 PP == domain 2 score: 91.1 bits; conditional E-value: 6e-30 HHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSH CS Helicase_C 4 ekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsv 64 + ++++ +hg+ +q+eree l+ f++g +++lvat+va+rG+d+p+v+ Vin+dlp + Paraphysomonas-imperforata-PA2_CAMPEP_0190489260 445 CRHKFPASSIHGDKSQREREESLRLFKSGMTPILVATDVAARGLDIPNVTQVINYDLPSNI 505 5567999****************************************************** PP HHHHHHHTTSSTTT CS Helicase_C 65 tsyiQriGRtgRag 78 ++y++riGRtgR+g Paraphysomonas-imperforata-PA2_CAMPEP_0190489260 506 DDYVHRIGRTGRVG 519 ************86 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 4.6e-05 0.23 30 73 .. 214 275 .. 199 371 .. 0.78 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 4.6e-05 EEESTTSTHHHHHH.HHHHHH-S.................-EEEEESSHHHHHHHHHHGGG CS ResIII 30 ivmaTGtGKTlvaa.sliarlar.................kflflvprkelleqaleefkk 72 + TG+GKT + +i+ +++ +l+l+p++el +q ++e +k Paraphysomonas-imperforata-PA2_CAMPEP_0190489260 214 ACAQTGSGKTAGFLfPMISSMLQtgalptpsssssrgvypTALILAPTRELASQIYDESQK 274 5578******977742444444456688899999999*******************99854 PP G CS ResIII 73 f 73 f Paraphysomonas-imperforata-PA2_CAMPEP_0190489260 275 F 275 4 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (604 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 356 (0.0240038); expected 296.6 (0.02) Passed bias filter: 286 (0.0192839); expected 296.6 (0.02) Passed Vit filter: 35 (0.00235992); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.33u 0.36s 00:00:00.69 Elapsed: 00:00:01.45 # Mc/sec: 1087.34 // Query: Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 [L=1228] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-40 137.5 0.1 1e-18 67.8 0.0 3.6 3 Ribonuclease_3 Ribonuclease III domain 3.4e-28 98.1 1.7 8.4e-11 41.9 0.0 5.3 4 Ribonucleas_3_3 Ribonuclease-III-like Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.0 0.86 6.3e+03 27 70 .. 616 657 .. 606 735 .. 0.59 2 ! 67.8 0.0 1.4e-22 1e-18 1 114 [] 783 1002 .. 783 1002 .. 0.86 3 ! 65.5 0.0 7e-22 5.2e-18 1 113 [. 1079 1202 .. 1079 1203 .. 0.78 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 0.86 SHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBHHHHHHSTT--T CS Ribonuclease_3 27 hegklsklrsklvsnenlarlakklglpsylresefdppknwlp 70 ++g+l+ r+ ++ n +l + +g +l ++ +n + Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 616 SKGRLTMERADAMRESNSHELIRAMGVNMRLS--LIQILRNTQS 657 67888888888888888888888755433322..2233322222 PP == domain 2 score: 67.8 bits; conditional E-value: 1.4e-22 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBH CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylre 59 erLefLGD vlk++i+ +++ +p ++eg+l+ r+k++sn nl+ ak+ +l +ylr+ Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 783 ERLEFLGDTVLKMLISWAVYLYHPLAQEGELTIERTKIISNANLSMQAKRNELVPYLRA 841 8*******************999***********************************9 PP HHHHHSTT--T...................................SSSSS.SC..... CS Ribonuclease_3 60 sefdppknwlp...................................lnkdlangk.... 79 +f + k+ l +nk+ ++ + Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 842 VSFSTGKQELLhmppgmryvlddsssdfsqphakrglhlrtlwnrnINKNVKKSEfekk 900 99999888887999999999999999988888888888888866664444433337788 PP ........................................................... CS Ribonuclease_3 80 ........................................................... 79 Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 901 iqkqrmldtvirnggpamiqmssddaslsascsrskekgpamiqmssddaslsafcsrs 959 888889999************************99999999999999999999999998 PP ......................TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 80 .......grqsisydlk.eqsiadkvladvvEAliGaiyldsg 114 + + + d +++++ kvlad++EAl+Ga y+++g Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 960 kekgkkrKATVPPSDEYiTADVKAKVLADMMEALLGAFYVSGG 1002 88887552233333444799999*****************987 PP == domain 3 score: 65.5 bits; conditional E-value: 7e-22 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBH CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylre 59 +rLefLGD vl+la+++ l++ +p ++g+l++ + +l+sn++l ++ l+l++ + Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 1079 QRLEFLGDGVLDLAVVDLLYHAHPTSSQGHLTDVKCSLISNKALGLIGFGLELHKCVLT 1137 7******************************************************9997 PP HHHHHSTT--T......SSSSS.SC............................TSHHHH CS Ribonuclease_3 60 sefdppknwlp......lnkdlangk.............grqsisydlkeqsiadkvla 99 s+ ++ + + g+ s s+d +s kvla Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 1138 SSPHLAFCLEHltaaqcG-------NssdcvedemiddkGDGSVSTDT-ASSTGIKVLA 1188 666664433334344440.......14455555555554333433333.36789***** PP HHHHHHHHHHHHHT CS Ribonuclease_3 100 dvvEAliGaiylds 113 dv+EA+iGai++ds Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 1189 DVLEAIIGAIFIDS 1202 ************98 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.0 0.76 5.6e+03 44 80 .. 612 648 .. 605 668 .. 0.65 2 ! 29.3 0.0 8.9e-11 6.6e-07 22 83 .. 782 847 .. 776 864 .. 0.84 3 ! 17.3 0.0 4.7e-07 0.0035 92 121 .. 982 1011 .. 967 1016 .. 0.88 4 ! 41.9 0.0 1.1e-14 8.4e-11 4 113 .. 1058 1204 .. 1055 1216 .. 0.71 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.76 Ribonucleas_3_3 44 kakkdegeltkklaslvseeslaeiakelgLgkvlrl 80 ++ ++g+lt ++a+ ++e + e+ + +g + l l Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 612 QYYLSKGRLTMERADAMRESNSHELIRAMGVNMRLSL 648 5566788999999999988887777777776655554 PP == domain 2 score: 29.3 bits; conditional E-value: 8.9e-11 Ribonucleas_3_3 22 NerLefLGdavLelvvseyl.lekakkdegeltkklaslvseeslaeiakelgLgkvlrl. 80 erLefLGd vL++++s ++ l ++ +egelt ++++++s+ +l+ ak+ +L +lr Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 782 SERLEFLGDTVLKMLISWAVyLYHPLAQEGELTIERTKIISNANLSMQAKRNELVPYLRAv 842 59***********9887766156667799*****************************986 PP Ribonucleas_3_3 81 ..rkg 83 ++g Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 843 sfSTG 847 65443 PP == domain 3 score: 17.3 bits; conditional E-value: 4.7e-07 Ribonucleas_3_3 92 rekvladaleAliGAiyldkGaeeakefve 121 + kvlad++eAl+GA y+ +G+++a+e+++ Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 982 KAKVLADMMEALLGAFYVSGGLDQAMELLN 1011 679**********************99875 PP == domain 4 score: 41.9 bits; conditional E-value: 1.1e-14 Ribonucleas_3_3 4 lllqaltHkSy..angrkgyNerLefLGdavLelvvseyllekakk.degeltkklasl 59 ll++al S ++ +++++rLefLGd vL+l+v+++l++ +++ ++g lt + sl Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 1058 LLQEALSCPSAspSSTGEESYQRLEFLGDGVLDLAVVDLLYHAHPTsSQGHLTDVKCSL 1116 56666666666223345689********************99976626889999999** PP Ribonucleas_3_3 60 vseeslaeiakelg....................Lgkvlrl.................r 81 +s+++l i+ l+ + Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 1117 ISNKALGLIGFGLElhkcvltssphlafclehltA-----AqcgnssdcvedemiddkG 1170 ****9999988888445555555555555444440.....1555555555555555674 PP Ribonucleas_3_3 82 kgeee..tessgrekvladaleAliGAiyldkGa 113 +g+++ t+ss kvlad+leA+iGAi++d+ + Paraphysomonas-imperforata-PA2_CAMPEP_0190490246 1171 DGSVStdTASSTGIKVLADVLEAIIGAIFIDSQY 1204 444432267777788***************9876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1228 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 553 (0.0372868); expected 296.6 (0.02) Passed bias filter: 224 (0.0151035); expected 296.6 (0.02) Passed Vit filter: 13 (0.000876542); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.48u 0.32s 00:00:00.80 Elapsed: 00:00:01.19 # Mc/sec: 2693.69 // Query: Paraphysomonas-imperforata-PA2_CAMPEP_0190472068 [L=521] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-44 150.5 0.0 1.4e-43 148.3 0.0 1.9 2 DEAD DEAD/DEAH box helicase 5.3e-26 90.2 0.1 1.8e-25 88.5 0.1 1.9 2 Helicase_C Helicase conserved C-terminal domain 0.00042 20.1 0.0 0.00088 19.1 0.0 1.5 1 ResIII Type III restriction enzyme, res subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 148.3 0.0 2.8e-47 1.4e-43 1 168 [. 138 308 .. 138 309 .. 0.94 2 ? -0.3 0.0 0.13 6.5e+02 45 102 .. 353 419 .. 331 426 .. 0.63 Alignments for each domain: == domain 1 score: 148.3 bits; conditional E-value: 2.8e-47 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT.....EEEEEESSHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.....xxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq.....kalivaPtre 55 tpiQ++ +p +l g+d+++ ++TGsGKTlafl+p + ++ + + q +l++aPtre Paraphysomonas-imperforata-PA2_CAMPEP_0190472068 138 TPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPGMIHINAQpYLQpgdgpIVLVLAPTRE 198 89**********99**********************99977655559************** PP HHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 56 LaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkln 116 La q+ +++ +f++ +++ ++++ggv+ +r q l++g++iv++Tpgrl+d++++g+ n Paraphysomonas-imperforata-PA2_CAMPEP_0190472068 199 LACQIKEECDKFGNSSDIKNTCVYGGVP-KRTQVHDLRRGIEIVIATPGRLIDHLENGTTN 258 ****************************.55999999999******************99* PP CTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 117 lsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 l +v +lVlDEadr+l++gf++q+++i+++++ ++q+++ SAT+pk+v+ Paraphysomonas-imperforata-PA2_CAMPEP_0190472068 259 LRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP--DRQTLLWSATWPKEVQA 308 ******************************944..59**********99986 PP == domain 2 score: -0.3 bits; conditional E-value: 0.13 T..........EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH... CS x..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx... RF DEAD 45 q..........kalivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvl... 92 + ++li + t++ + q ++l+ +l + +i+g+++++ ++++vl Paraphysomonas-imperforata-PA2_CAMPEP_0190472068 353 HvnnfkddpgcRCLIFVETKKGCDQLTRSLRG----ERLIARAIHGDKSQQ-ERDEVLadf 408 05555555555666666666666666666643....346677888888855.777777777 PP .TT.-SEEEEE CS .xxxxxxxxxx RF DEAD 93 .dngvdivvgT 102 d++ ++v+T Paraphysomonas-imperforata-PA2_CAMPEP_0190472068 409 rDGRLPFMVAT 419 77777777776 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.0 0.48 2.4e+03 4 28 .. 212 236 .. 209 239 .. 0.82 2 ! 88.5 0.1 3.6e-29 1.8e-25 8 78 .] 387 457 .. 380 457 .. 0.94 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.48 HHTTS-EEEESTTSTHHHHHHHHHH CS Helicase_C 4 ekkgikvailhgelpqnereeileq 28 + +ik ++++g+ p++ + + l++ Paraphysomonas-imperforata-PA2_CAMPEP_0190472068 212 NSSDIKNTCVYGGVPKRTQVHDLRR 236 67789999********999987765 PP == domain 2 score: 88.5 bits; conditional E-value: 3.6e-29 S-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHH CS Helicase_C 8 ikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyi 68 + + ++hg+ +q+er+e+l +f++g+ +++vat+va+rG+d+++v++V nfd+p++ ++y+ Paraphysomonas-imperforata-PA2_CAMPEP_0190472068 387 LIARAIHGDKSQQERDEVLADFRDGRLPFMVATDVAARGLDVKGVKFVCNFDMPQTAEDYV 447 55779******************************************************** PP HHHTTSSTTT CS Helicase_C 69 QriGRtgRag 78 +riGRtgRag Paraphysomonas-imperforata-PA2_CAMPEP_0190472068 448 HRIGRTGRAG 457 ********97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.1 0.0 1.8e-07 0.00088 32 181 .. 158 301 .. 152 304 .. 0.60 Alignments for each domain: == domain 1 score: 19.1 bits; conditional E-value: 1.8e-07 ESTTSTHHHHHH.....HHHHHH-S.........-EEEEESSHHHHHHHHHHGGGGTGG.. CS ResIII 32 maTGtGKTlvaa.....sliarlar.........kflflvprkelleqaleefkkfeskki 78 aTG+GKTl + ++ a + +l+l+p++el q +ee +kf +++ Paraphysomonas-imperforata-PA2_CAMPEP_0190472068 158 SATGSGKTLAFLlpgmiHINA---QpylqpgdgpIVLVLAPTRELACQIKEECDKFGNSS- 214 69*******999775553333...344489***********************7776552. PP .GEEEESSS-B---SEEEEEHHHHH..................................HT CS ResIII 79 efekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskses 139 + k+ ++g k+ + ++ +ei+++t +l le++ Paraphysomonas-imperforata-PA2_CAMPEP_0190472068 215 --------DIKNTCVYGGVPKRTQVHDL--RRGIEIVIATPGRLIDHLENGT--------- 256 ........11222222222222222222..2456777777777777666533......... PP HHHHTTT-SEEEEETGGGTTSTT....THHHHH..---SEEEEEESS CS ResIII 140 lealldefdviiiDEaHrlsakkk...yreile..fkkafllglTAT 181 +l + +++ DEa r+ ++ r+i+ + + l +AT Paraphysomonas-imperforata-PA2_CAMPEP_0190472068 257 --TNLRRVTYLVLDEADRMLDMGFepqIRKIVSqiRPDRQTLLWSAT 301 ..223345577777776666666533333333355555555666666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (521 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 433 (0.0291956); expected 296.6 (0.02) Passed bias filter: 370 (0.0249477); expected 296.6 (0.02) Passed Vit filter: 39 (0.00262963); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.30u 0.43s 00:00:00.73 Elapsed: 00:00:01.81 # Mc/sec: 751.37 // Query: Paraphysomonas-imperforata-PA2_CAMPEP_0190473658 [L=510] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.8e-44 150.5 0.0 1.3e-43 148.3 0.0 1.9 2 DEAD DEAD/DEAH box helicase 5.1e-26 90.3 0.1 1.7e-25 88.6 0.1 1.9 2 Helicase_C Helicase conserved C-terminal domain 0.0004 20.2 0.0 0.00084 19.2 0.0 1.5 1 ResIII Type III restriction enzyme, res subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 148.3 0.0 2.7e-47 1.3e-43 1 168 [. 127 297 .. 127 298 .. 0.94 2 ? -0.3 0.0 0.13 6.3e+02 45 102 .. 342 408 .. 320 415 .. 0.63 Alignments for each domain: == domain 1 score: 148.3 bits; conditional E-value: 2.7e-47 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT.....EEEEEESSHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.....xxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq.....kalivaPtre 55 tpiQ++ +p +l g+d+++ ++TGsGKTlafl+p + ++ + + q +l++aPtre Paraphysomonas-imperforata-PA2_CAMPEP_0190473658 127 TPIQSQGWPMALLGRDMIGISATGSGKTLAFLLPGMIHINAQpYLQpgdgpIVLVLAPTRE 187 89**********99**********************99977655559************** PP HHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 56 LaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkln 116 La q+ +++ +f++ +++ ++++ggv+ +r q l++g++iv++Tpgrl+d++++g+ n Paraphysomonas-imperforata-PA2_CAMPEP_0190473658 188 LACQIKEECDKFGNSSDIKNTCVYGGVP-KRTQVHDLRRGIEIVIATPGRLIDHLENGTTN 247 ****************************.55999999999******************99* PP CTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 117 lsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 l +v +lVlDEadr+l++gf++q+++i+++++ ++q+++ SAT+pk+v+ Paraphysomonas-imperforata-PA2_CAMPEP_0190473658 248 LRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP--DRQTLLWSATWPKEVQA 297 ******************************944..59**********99986 PP == domain 2 score: -0.3 bits; conditional E-value: 0.13 T..........EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH... CS x..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx... RF DEAD 45 q..........kalivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvl... 92 + ++li + t++ + q ++l+ +l + +i+g+++++ ++++vl Paraphysomonas-imperforata-PA2_CAMPEP_0190473658 342 HvnnfkddpgcRCLIFVETKKGCDQLTRSLRG----ERLIARAIHGDKSQQ-ERDEVLadf 397 05555555555666666666666666666643....346677888888855.777777777 PP .TT.-SEEEEE CS .xxxxxxxxxx RF DEAD 93 .dngvdivvgT 102 d++ ++v+T Paraphysomonas-imperforata-PA2_CAMPEP_0190473658 398 rDGRLPFMVAT 408 77777777776 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.0 0.47 2.3e+03 4 28 .. 201 225 .. 198 228 .. 0.82 2 ! 88.6 0.1 3.5e-29 1.7e-25 8 78 .] 376 446 .. 369 446 .. 0.94 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 0.47 HHTTS-EEEESTTSTHHHHHHHHHH CS Helicase_C 4 ekkgikvailhgelpqnereeileq 28 + +ik ++++g+ p++ + + l++ Paraphysomonas-imperforata-PA2_CAMPEP_0190473658 201 NSSDIKNTCVYGGVPKRTQVHDLRR 225 67789999********999987765 PP == domain 2 score: 88.6 bits; conditional E-value: 3.5e-29 S-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHH CS Helicase_C 8 ikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyi 68 + + ++hg+ +q+er+e+l +f++g+ +++vat+va+rG+d+++v++V nfd+p++ ++y+ Paraphysomonas-imperforata-PA2_CAMPEP_0190473658 376 LIARAIHGDKSQQERDEVLADFRDGRLPFMVATDVAARGLDVKGVKFVCNFDMPQTAEDYV 436 55779******************************************************** PP HHHTTSSTTT CS Helicase_C 69 QriGRtgRag 78 +riGRtgRag Paraphysomonas-imperforata-PA2_CAMPEP_0190473658 437 HRIGRTGRAG 446 ********97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.2 0.0 1.7e-07 0.00084 32 181 .. 147 290 .. 141 293 .. 0.60 Alignments for each domain: == domain 1 score: 19.2 bits; conditional E-value: 1.7e-07 ESTTSTHHHHHH.....HHHHHH-S.........-EEEEESSHHHHHHHHHHGGGGTGG.. CS ResIII 32 maTGtGKTlvaa.....sliarlar.........kflflvprkelleqaleefkkfeskki 78 aTG+GKTl + ++ a + +l+l+p++el q +ee +kf +++ Paraphysomonas-imperforata-PA2_CAMPEP_0190473658 147 SATGSGKTLAFLlpgmiHINA---QpylqpgdgpIVLVLAPTRELACQIKEECDKFGNSS- 203 69*******999775553333...344489***********************7776552. PP .GEEEESSS-B---SEEEEEHHHHH..................................HT CS ResIII 79 efekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskses 139 + k+ ++g k+ + ++ +ei+++t +l le++ Paraphysomonas-imperforata-PA2_CAMPEP_0190473658 204 --------DIKNTCVYGGVPKRTQVHDL--RRGIEIVIATPGRLIDHLENGT--------- 245 ........11222222222222222222..2456777777777777766533......... PP HHHHTTT-SEEEEETGGGTTSTT....THHHHH..---SEEEEEESS CS ResIII 140 lealldefdviiiDEaHrlsakkk...yreile..fkkafllglTAT 181 +l + +++ DEa r+ ++ r+i+ + + l +AT Paraphysomonas-imperforata-PA2_CAMPEP_0190473658 246 --TNLRRVTYLVLDEADRMLDMGFepqIRKIVSqiRPDRQTLLWSAT 290 ..223345577777776666666533333333355555555666666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (510 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 422 (0.0284539); expected 296.6 (0.02) Passed bias filter: 362 (0.0244083); expected 296.6 (0.02) Passed Vit filter: 36 (0.00242735); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.30u 0.42s 00:00:00.72 Elapsed: 00:00:01.72 # Mc/sec: 773.99 // Query: Paraphysomonas-imperforata-PA2_CAMPEP_0190467578 [L=776] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-41 141.8 0.0 7e-41 139.5 0.0 2.2 2 DEAD DEAD/DEAH box helicase 1.2e-27 95.5 0.2 3.5e-27 94.0 0.1 1.9 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.013 14.6 0.0 0.013 14.6 0.0 2.8 3 CMS1 U3-containing 90S pre-ribosomal complex subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 139.5 0.0 1.4e-44 7e-41 2 168 .. 366 562 .. 365 563 .. 0.89 2 ? -1.5 0.0 0.3 1.5e+03 71 102 .. 637 671 .. 624 677 .. 0.71 Alignments for each domain: == domain 1 score: 139.5 bits; conditional E-value: 1.4e-44 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT.........EEEEEES CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.........xxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq.........kalivaP 52 piQ++aip +g+d+++ aeTGsGKT+af +p+++ ll+ q a+i+aP Paraphysomonas-imperforata-PA2_CAMPEP_0190467578 366 PIQRQAIPIGKQGRDIMGIAETGSGKTAAFTLPLLHYLLSLpPGQikrcddegpLAVIMAP 426 8*************************************9986666**************** PP SHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 53 treLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstg 113 treLa+q+ +++ +++k +++++++++gg++++ +q l++gv+iv+gTpgr++d ++++ Paraphysomonas-imperforata-PA2_CAMPEP_0190467578 427 TRELAQQIEDEVIKLAKFTDFKTVCVVGGQSIE-EQGYALRKGVEIVIGTPGRMVDCIENN 486 *******************************99.9*****999*****************9 PP SSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCT........T.............S CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........x.............x RF DEAD 114 klnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgk........r.............l 153 l l q++++VlDEadr+ ++gf+ q+ q+l ++ + + + Paraphysomonas-imperforata-PA2_CAMPEP_0190467578 487 YLVLNQCNYVVLDEADRMIDMGFEGQVMQVLDAMGGLLksedeallEqqvseaahgeavyR 547 99***********************999988886444344444455055666677778867 PP EEEEEESS-THHHHH CS xxxxxxxxxxxxxxx RF DEAD 154 qvivlSATlpkdvkk 168 + ++SAT++ +v++ Paraphysomonas-imperforata-PA2_CAMPEP_0190467578 548 VTAMFSATMSVEVER 562 8********988876 PP == domain 2 score: -1.5 bits; conditional E-value: 0.3 SSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 71 pklrvlliiggvalardqlsvl....dngvdivvgT 102 ++r+ ++++g +++ +++ l + ++++v+T Paraphysomonas-imperforata-PA2_CAMPEP_0190467578 637 AGIRCGVLHSGRSQD-QREDTLkqfrTGAIQVLVAT 671 578888998887744.22222335588889999998 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 94.0 0.1 7e-31 3.5e-27 2 78 .] 633 709 .. 632 709 .. 0.98 Alignments for each domain: == domain 1 score: 94.0 bits; conditional E-value: 7e-31 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSS CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlpr 62 +le+ gi++ +lh++ +q++re++l+qf++g +vlvat+va+rG+d+ dv++V n+d+p Paraphysomonas-imperforata-PA2_CAMPEP_0190467578 633 QLEAAGIRCGVLHSGRSQDQREDTLKQFRTGAIQVLVATDVAGRGLDISDVKFVLNYDMPN 693 6899********************************************************* PP SHHHHHHHHTTSSTTT CS Helicase_C 63 svtsyiQriGRtgRag 78 ++y +riGRtgRag Paraphysomonas-imperforata-PA2_CAMPEP_0190467578 694 KIENYCHRIGRTGRAG 709 **************97 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.8 0.76 3.8e+03 17 50 .. 86 119 .. 78 138 .. 0.57 2 ? -5.0 3.8 2.4 1.2e+04 5 49 .. 126 173 .. 120 183 .. 0.58 3 ? 14.6 0.0 2.6e-06 0.013 174 210 .. 465 501 .. 457 535 .. 0.89 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 0.76 CMS1 17 kkeksekkRskkkerkkeklketqDveaglneav 50 kke++e +k ++r++ek ++ D + g ++ v Paraphysomonas-imperforata-PA2_CAMPEP_0190467578 86 KKERQELALQKLQQRHEEKQQKELDAKDGFKRFV 119 4444444444444444444444446666655544 PP == domain 2 score: -5.0 bits; conditional E-value: 2.4 CMS1 5 erkrkae.ndekgkkeksekkRs..kkkerkkeklketqDveaglnea 49 erkr a + e+ ++ek +++R+ k +++++++ ++D g++e+ Paraphysomonas-imperforata-PA2_CAMPEP_0190467578 126 ERKRTAYlEREREEQEKLRRQREenKATVEQESEVRAIRDHYLGVKEK 173 444444333444445555555541155556777888888887777765 PP == domain 3 score: 14.6 bits; conditional E-value: 2.6e-06 CMS1 174 kksrigiavGtpgRiadLleeeslsvdeLkrivlDas 210 ++ + i +GtpgR++d +e++ l +++ +++vlD + Paraphysomonas-imperforata-PA2_CAMPEP_0190467578 465 LRKGVEIVIGTPGRMVDCIENNYLVLNQCNYVVLDEA 501 55668899***************************75 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (776 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1490 (0.100465); expected 296.6 (0.02) Passed bias filter: 349 (0.0235318); expected 296.6 (0.02) Passed Vit filter: 29 (0.00195536); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.38u 0.41s 00:00:00.79 Elapsed: 00:00:01.63 # Mc/sec: 1242.71 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 [L=592] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-44 150.1 0.0 2.8e-43 147.3 0.0 2.2 2 DEAD DEAD/DEAH box helicase 3.2e-26 90.9 0.0 1.1e-25 89.3 0.0 2.0 1 Helicase_C Helicase conserved C-terminal domain 9.3e-08 30.8 0.0 0.00012 20.6 0.0 2.9 2 DUF1253 Protein of unknown function (DUF1253) 0.0058 15.7 0.0 0.0058 15.7 0.0 3.4 3 CMS1 U3-containing 90S pre-ribosomal complex subun Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 147.3 0.0 7.5e-47 2.8e-43 2 167 .. 193 371 .. 192 373 .. 0.91 2 ? -0.2 0.0 0.16 6.1e+02 64 102 .. 442 483 .. 402 519 .. 0.77 Alignments for each domain: == domain 1 score: 147.3 bits; conditional E-value: 7.5e-47 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT.. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.. RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq.. 45 piQ++++p +l+g+d ++ a+TGsGKTlaf+ip++ +l+++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 193 PIQSQCWPILLSGKDAIGIAATGSGKTLAFVIPALLALAKEgP-Asl 238 8**********************************99988744.36* PP ........EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEH CS ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 ........kalivaPtreLaeqtlnnlkqfkkypklrvlliiggval 84 ++li+aPtreLa q +n + ++++ +++++ggv++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 239 srkgvprpRMLILAPTRELAMQSHNVVVEIGSA---HCVCVYGGVSK 282 *******************************98...9999******6 PP HHHHHHHH..TT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHH CS xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 85 ardqlsvl..dngvdivvgTpgrlddlvstgklnlsqvrllVlDEad 129 q++ l ++gvd+vv+Tpgrl dl+ ++l+l+++r+lVlDEad Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 283 H-TQKNELraNGGVDVVVATPGRLEDLIDDNSLTLEDIRYLVLDEAD 328 6.777777899******************9999************** PP HHHSTTTHHHHHHHHHHSHHCTT.....SEEEEEESS-THHHH CS xxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxx RF DEAD 130 rllsqgfsdqlnqilqilcdgkr.....lqvivlSATlpkdvk 167 r+l+ gf++ +++i+ ++ ++ +q++++SAT+p++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 329 RMLDDGFEPAIRRIIGKCPAANAkagvgRQTVMFSATWPEEIR 371 *****************75555256677**********98775 PP == domain 2 score: -0.2 bits; conditional E-value: 0.16 HHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 64 lkqfkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 l++ ++ + +v++i+g++++ d++s l ++++ ++++T Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 442 LQNTLEGRGYSVTAIHGDKNQH-DRTSALeefkSGRIPLLIAT 483 3344444556899999999965.88888878888888888888 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 89.3 0.0 2.9e-29 1.1e-25 3 78 .] 446 521 .. 444 521 .. 0.97 Alignments for each domain: == domain 1 score: 89.3 bits; conditional E-value: 2.9e-29 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidl 49 le +g++v+++hg+ +q +r+ le+f++g+ + l+at+va+rG+d+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 446 LEGRGYSVTAIHGDKNQHDRTSALEEFKSGRIPLLIATDVAARGLDI 492 8899******************************************* PP TTEEEEEESSSSSSHHHHHHHHTTSSTTT CS Helicase_C 50 pdvnvVinfdlprsvtsyiQriGRtgRag 78 p+v++V n+++p +v++y++riGRtgR g Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 493 PQVEYVLNYSFPLTVEDYVHRIGRTGRGG 521 ***************************86 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.6 0.0 0.00055 2.1 30 60 .. 238 268 .. 229 290 .. 0.82 2 ! 20.6 0.0 3.2e-08 0.00012 209 359 .. 350 485 .. 319 534 .. 0.80 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.00055 DUF1253 30 lrdqgftrpkvLillpfrniakevvdllikl 60 l +g rp++Lil p+r+ a++ + ++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 238 LSRKGVPRPRMLILAPTRELAMQSHNVVVEI 268 6678999**************9988777776 PP == domain 2 score: 20.6 bits; conditional E-value: 3.2e-08 DUF1253 209 dgqaknyRQtiilssietpeinslfnsklaNlrgkvklkkkekkigv 255 + +a RQt+++s++ +ei++l + l+N + +v + e Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 350 NAKAGVGRQTVMFSATWPEEIRALADTFLSNAAIRVTVGGDE----- 391 5566778********************888887665554433..... PP DUF1253 256 lekvvlkvrqvFerieaesilkeedarlkfFtknvlpkltkeskekg 302 + + +v q+ e i+a +d rl ++l k++ +s++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 392 -LSANHRVTQIVECIDAR----MKDRRL----MELLAKYH-KSRKNR 428 .45677888988888753....456665....47888888.8999** PP DUF1253 303 vlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkg 349 +lif+ + v ++n l+ + +s +ai+ ++++ ++a + Fk+g Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 429 CLIFVLYKREAVTLQNTLEGRGYSVTAIHGDKNQHDRTSALEEFKSG 475 *********************************************** PP DUF1253 350 rkkiLLvteR 359 r+++L+ t+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 476 RIPLLIATDV 485 *******985 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -5.0 5.3 3.2 1.2e+04 17 40 .. 30 51 .. 4 74 .. 0.54 2 ? -6.3 7.6 4 1.5e+04 12 41 .. 82 108 .. 63 142 .. 0.59 3 ! 15.7 0.0 1.6e-06 0.0058 178 209 .. 295 326 .. 283 332 .. 0.90 Alignments for each domain: == domain 1 score: -5.0 bits; conditional E-value: 3.2 CMS1 17 kkeksekkRskkkerkkeklketq 40 +kek k+++k+k+++k+++ q Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 30 HKEK--KRKRKDKDEQKNEISVNQ 51 3444..333333344444443333 PP == domain 2 score: -6.3 bits; conditional E-value: 4 CMS1 12 ndekgkkeksekkRskkkerkkeklketqD 41 n +gk ek+++k +kkk+ k+ +D Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 82 NFSNGKSEKKDRKQKKKKKDKS---EGAAD 108 4455555553333333333222...22344 PP == domain 3 score: 15.7 bits; conditional E-value: 1.6e-06 CMS1 178 igiavGtpgRiadLleeeslsvdeLkrivlDa 209 + + v tpgR+ dL++++sl++++++++vlD Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185034006 295 VDVVVATPGRLEDLIDDNSLTLEDIRYLVLDE 326 67889*************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (592 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1636 (0.110309); expected 296.6 (0.02) Passed bias filter: 452 (0.0304767); expected 296.6 (0.02) Passed Vit filter: 70 (0.00471984); expected 14.8 (0.001) Passed Fwd filter: 11 (0.00074169); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.41u 0.48s 00:00:00.88 Elapsed: 00:00:02.27 # Mc/sec: 677.77 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 [L=1665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-162 537.4 0.0 5.1e-102 341.3 0.0 2.2 2 Sec63 Sec63 Brl domain 1.8e-57 193.5 0.6 2.8e-27 95.2 0.0 3.2 4 DEAD DEAD/DEAH box helicase 4.6e-16 58.4 0.0 2.1e-08 33.9 0.0 2.8 2 Helicase_C Helicase conserved C-terminal domain 1.7e-15 57.3 0.0 5.1e-07 29.7 0.0 2.6 2 ResIII Type III restriction enzyme, res subunit 0.00011 21.4 0.0 0.52 9.5 0.0 2.6 2 PhoH PhoH-like protein 0.00027 19.9 0.0 0.077 11.8 0.0 2.5 2 T2SE Type II/IV secretion system protein 0.00074 18.9 0.0 0.93 8.7 0.0 2.5 2 UvrD-helicase UvrD/REP helicase N-terminal domain 0.0032 17.2 0.0 0.39 10.5 0.0 3.0 3 AAA_19 Part of AAA domain ------ inclusion threshold ------ 0.021 15.1 0.0 6.9 6.9 0.0 2.6 2 AAA_23 AAA domain 0.053 12.9 0.8 2.8 7.3 0.0 3.4 4 IstB_IS21 IstB-like ATP binding protein 0.085 12.4 0.0 9.4 5.7 0.0 2.7 2 AAA_30 AAA domain 0.091 11.8 0.0 16 4.5 0.0 2.7 2 Zeta_toxin Zeta toxin Domain annotation for each model (and alignments): >> Sec63 Sec63 Brl domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 341.3 0.0 4.1e-105 5.1e-102 2 314 .] 515 819 .. 514 819 .. 0.98 2 ! 194.0 0.0 2.7e-60 3.4e-57 2 283 .. 1346 1653 .. 1345 1661 .. 0.91 Alignments for each domain: == domain 1 score: 341.3 bits; conditional E-value: 4.1e-105 SSCGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS- CS Sec63 2 telGriaskYyilyeTmetfneslkpkttlkdlleilskaeEFeeip 48 t++Grias+Yyi+y+T+e fn++l+++ ++d l++l++++EF++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 515 TDMGRIASHYYIKYDTIEAFNTMLTAHLGESDALHVLCSSTEFDQLK 561 89********************************************* PP --TTHHHHHHHHHCCSSS--STS-TTSHHHHHHHHHHHHHCT----. CS Sec63 49 vReeEdkelkklleelpievdkekiespstKvnlLlqaylsrlelev 95 vR+eE +e+++l+++ ++v ++ +e++s Kv++Llq+y+++ ++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 562 VRPEELAEIDELNKRTSVPV-RGAVEETSGKVSVLLQTYINQSNVKS 607 ***************999**.************************** PP HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHT CS Sec63 96 fsLvsDlkyvlqnaprllralveialskgwlslalralelskmieqr 142 f+L+sD++yv+qna+r+ ral+ei+l++gw+s+al l+lsk+i++r Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 608 FTLISDTNYVAQNAGRISRALFEICLKRGWSSMALLFLTLSKSIDRR 654 *********************************************** PP S-TTS-GGGGSTT--HHHHHHHHHTT--SHHHHHHS-HHHHHHHH.- CS Sec63 143 lwdsdsplrQlphiseevikklekkgiksledlvelseeeleellkq 189 + + ++plrQ+ +s+++i++le+ + ++++l+++s+ e+++l++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 655 VRPDQHPLRQFGDLSRDIIHRLENAN-ADIYRLMDMSPLEINQLCH- 699 **************************.******************9. PP S-HHHHHHHHHHCCS--EEEEEEETTC.CGEESEEEEEEEEEESS.. CS Sec63 190 npkqgkdiakvlnklPkleveakvqpiteeveeslrvevtlkrdfkw 236 pk+g+++ +++++lP+lev++ vqpit+ + lr++vtl++ f+w Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 700 APKIGSKVLSLVRQLPHLEVDVNVQPITRGI---LRMSVTLTALFNW 743 99*****************************...************* PP ..T-SS--B--EEEEEEECCCTEEEEEEEE--SSC..EEEEEEEEE- CS Sec63 237 dekypgkksesfwlvvedsendeilaiervslkkkkaseeheleftv 283 +++y+g e+fwl+ved en+ i+++e++ l kk++++eh++e+ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 744 NDRYHGY-VEPFWLWVEDGENEYIYHSENFLLHKKQQHSEHKMELII 789 *******.************************6666899******** PP -.SSEE..EEEEEEEEESS-SS--EEEEEEE CS Sec63 284 pialepkpknltirlvsdkwlgldkevalsl 314 pi+ ep p +++ir+vsd+w+g+++ +++s+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 790 PIR-EPVPTQYFIRIVSDRWVGCESVTPVSF 819 ***.***********************9987 PP == domain 2 score: 194.0 bits; conditional E-value: 2.7e-60 SSCGC--------HHHHHHHHHH--T......T--HHHHHHHHHT CS Sec63 2 telGriaskYyilyeTmetfneslkp......kttlkdlleilsk 40 t+lG ia+ Yy++y+T+ + ++l+ + t +dl +ls+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 1346 TVLGSIAAFYYLDYRTVGLVRRRLDGfdvangQGTIEDLTLLLSE 1390 89********************6665555554779********** PP SGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHHHHHHH CS Sec63 41 aeEFeeipvReeEdkelkklleelpievdkekiespstKvnlLlq 85 a EF+e+pvR++E++ +++l+ lp d+ ++es++tK++lLlq Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 1391 AYEFSELPVRHNEEHLNAQLALTLPWNTDTLDMESSHTKTFLLLQ 1435 ********************************************* PP HHHCT----.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHH CS Sec63 86 aylsrlelevfsLvsDlkyvlqnaprllralveialskgwlslal 130 a++ +++l+ +++v+D+k+v+++apr+++a+++ia+ g+l+l+l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 1436 AHFYQVSLPISDYVTDTKSVIDQAPRVINAMIDIAADAGHLELTL 1480 ********************************************* PP HHHHHHHHHHHTS-TTS-GGGGSTT--HHHHHHHHH.TT--SHHH CS Sec63 131 ralelskmieqrlwdsdsplrQlphiseevikklek.kgiksled 174 r+++ls+mi+q+l + +s l+Qlph+se+ + +e+ ++k ++d Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 1481 RLMRLSQMIVQGLSEESSQLLQLPHMSEAACDVFESrGRVKGVKD 1525 ************************************766789*** PP HHHS-HHHHHHHH.-S-....HHHHHHHHHHCCS--EEEEEEETT CS Sec63 175 lvelseeeleellkqnp....kqgkdiakvlnklPkleveakvqp 215 l++l +++l+++l+ n + +d + l++lP+l+v+++ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 1526 LFRLADNKLHKILS-NIfevrSHSNDFLRALRNLPQLSVTISARI 1569 **********9998.445788****************99666555 PP C.CG..EE...........SEEEEEEEEEESS...........T- CS Sec63 216 itee..ve...........eslrvevtlkrdfkwde.......ky 240 ++e +e ++++v vt++r + + +y Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 1570 NDDErnIEqdgdsfpvsigQKVTVGVTVSRVAGGTGsekvyspRY 1614 5555226699*********9**********99777799******* PP SS--B--EEEEEEECCCTEEEEEEEE--SSC..EEEEEEEEE- CS Sec63 241 pgkksesfwlvvedsendeilaiervslkkkkaseeheleftv 283 ++ ks s+wlv++ s++ e++a++r+ +++ +lef+v Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 1615 HKPKSISWWLVLGSSDG-ELIALKRIGK-I--SNTKYNLEFEV 1653 *************9888.9******977.2..25778888876 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 94.9 0.1 2.9e-30 3.6e-27 2 165 .. 8 189 .. 7 195 .. 0.89 2 ? -2.3 0.0 2.1 2.6e+03 146 163 .. 332 349 .. 308 352 .. 0.67 3 ! 95.2 0.0 2.3e-30 2.8e-27 2 163 .. 862 1027 .. 861 1033 .. 0.87 4 ? -4.1 0.0 7.3 9e+03 93 162 .. 1170 1182 .. 1154 1183 .. 0.58 Alignments for each domain: == domain 1 score: 94.9 bits; conditional E-value: 2.9e-30 HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT. CS xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx. RF DEAD 2 piQaeaiplil.gggdvlvaaeTGsGKTlaflipviqillet.kdq. 45 iQ++++++++ + +++l++a+TG+GKT ++++ ++ ++++ +++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 8 HIQSKVFQTAYnTPENMLICAPTGAGKTNIAMLCYLHLVKQHiDEDg 54 69*********558**********************99988765559 PP .......EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHH CS .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 .......kalivaPtreLaeqtlnnlkqfkkypklrvlliiggvala 85 k +++aP+++La+++++++++++k+++l v +g+++l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 55 vldvsrlKGIYIAPMKALAQEVVEKFSKRLKPLGLVVREFTGDMQLT 101 *********************************************77 PP HHHHHHHTT.-SEEEEEHHHHHHHHHTTSS.HCTT.EEEEEEETHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxx RF DEAD 86 rdqlsvldngvdivvgTpgrlddlvstgkl.nlsq.vrllVlDEadr 130 +++v d +++v+Tp+++d ++++g +l v+l+++DE++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 102 --RQEVAD--SQLIVTTPEKWDVVTRKGGDgSLGTlVSLIIIDEVHL 144 ..444554..69***************7777**999*********** PP HHSTTTHHHHHHHHHHSHHCTT............SEEEEEESS-THH CS xxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxx RF DEAD 131 llsqgfsdqlnqilqilcdgkr............lqvivlSATlpkd 165 l + +++ +++i+ +++++ + ++++ lSATlp + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 145 LAE-DRGAVIETIVARTQRYIEssqsfxxxqssfVRIVGLSATLP-N 189 ***.************99888455567777788899********9.3 PP == domain 2 score: -2.3 bits; conditional E-value: 2.1 HSHHCTTSEEEEEESS-T CS xxxxxxxxxxxxxxxxxx RF DEAD 146 ilcdgkrlqvivlSATlp 163 +l + ++v++++ATl Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 332 QLFERGVIKVLCCTATLA 349 332222488*******95 PP == domain 3 score: 95.2 bits; conditional E-value: 2.3e-30 HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT CS xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplil.gggdvlvaaeTGsGKTlaflipviqilletkdq 45 p+Q+++++ ++ ++++vlv a+TGsGKT+ i+++++l e++ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 862 PVQSQTFHVLYhTDSNVLVGAPTGSGKTITSEIAILRMLNESRGS 906 89******99967999***********************998778 PP EEEEEESSHHHHHHHHHHHHHHTTT.SSCCEEEETTTSEHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF DEAD 46 kalivaPtreLaeqtlnnlkqfkky.pklrvlliiggvalardql 89 ka+++aP+++La++ l+++k+ + + ++l+v+ ++g+v+ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 907 KAVYIAPLKALARERLSDWKKKLGHgLGLSVVELTGDVTP---DI 948 *******************9888888************94...47 PP HHHTT.-SEEEEEHHHHHHHHHTTSS..HCTTEEEEEEETHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF DEAD 90 svldngvdivvgTpgrlddlvstgkl..nlsqvrllVlDEadrll 132 s l++ +d++++Tp+++d +++ +++ ++qv+ll++DE++ l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 949 SLLKR-CDVIITTPEKWDGITRGWSQrdYVKQVSLLIIDEIHLLG 992 77866.****************9554446677************* PP STTTHHHHHHHHHHSHHCT.....TSEEEEEESS-T CS xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxx RF DEAD 133 sqgfsdqlnqilqilcdgk.....rlqvivlSATlp 163 ++++ l+ i+++++ + ++++i lS l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 993 V-DRGPVLEVIVSRMRYIAsltnhNVRIIGLSTALA 1027 *.9***999999998777755554599999998776 PP == domain 4 score: -4.1 bits; conditional E-value: 7.3 TT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHHHHSTTTH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 93 dngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfs 137 ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 1170 SG------------------------------------------- 1171 33........................................... PP HHHHHHHHHSHHCTTSEEEEEESS- CS xxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 138 dqlnqilqilcdgkrlqvivlSATl 162 ++q++v++ Tl Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 1172 --------------KIQILVCTSTL 1182 ..............46666666665 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.4 0.0 1.3e-07 0.00016 12 77 .. 317 392 .. 307 393 .. 0.87 2 ! 33.9 0.0 1.7e-11 2.1e-08 10 77 .. 1149 1226 .. 1143 1227 .. 0.92 Alignments for each domain: == domain 1 score: 21.4 bits; conditional E-value: 1.3e-07 EESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEES CS Helicase_C 12 ilhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinf 58 +h+++ ++r+ + + f +g kvl++t ++ G++lp+ +v+i Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 317 THHAGMLRSDRTLTEQLFERGVIKVLCCTATLAWGVNLPGHTVIIKG 363 67999***********************************7777765 PP SS..........SSSHHHHHHHHTTSSTT CS Helicase_C 59 dl..........prsvtsyiQriGRtgRa 77 + s + Q+ GR+gR+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 364 TElydperggfvDLSILDVFQIFGRAGRP 392 557777888888888888**********7 PP == domain 2 score: 33.9 bits; conditional E-value: 1.7e-11 EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEE CS Helicase_C 10 vailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnv 54 v i+h++l + +r+ + e f +gk ++lv+t+ ++ G+++p+ ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 1149 VGIHHAGLDTHDRNTVEELFVSGKIQILVCTSTLAWGVNFPA-HL 1192 6899************************************86.77 PP EEESSS...........SSSHHHHHHHHTTSSTT CS Helicase_C 55 Vinfdl...........prsvtsyiQriGRtgRa 77 Vi + ++ vt+ +Q++GR+gR+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 1193 VIVKGTeyfdgklgryvDFPVTDVLQMMGRAGRP 1226 77666679*************************7 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.7 0.0 4.1e-10 5.1e-07 22 182 .. 12 187 .. 4 189 .. 0.69 2 ! 24.8 0.0 1.3e-08 1.6e-05 24 161 .. 874 994 .. 847 1024 .. 0.83 Alignments for each domain: == domain 1 score: 29.7 bits; conditional E-value: 4.1e-10 ........TTSEEEEEESTTSTHHHHHHHHHHHH-S........... CS ResIII 22 e......dekkrglivmaTGtGKTlvaasliarlar........... 51 + ++ +++li ++TG+GKT +a+ ++l + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 12 KvfqtayNTPENMLICAPTGAGKTNIAMLCYLHLVKqhidedgvldv 58 34444556789*****************7777777788889999999 PP ...-EEEEESSHHHHHHHHHHGGGGTGG...GEEEESSS-B---SEE CS ResIII 52 ...kflflvprkelleqaleefkkfeskkiefekkniavakkdklfg 95 k + ++p k+l + e+f sk+ + + + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 59 srlKGIYIAPMKALAQEVVEKF----SKRLKP-LGLV----VR---- 92 99********************....332222.2222....12.... PP EEEHHHHH..................................HTHHH CS ResIII 96 eeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslea 142 e +++++ +++ d+++i+tt k+ +++ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 93 EFTGDMQL-TRQEVADSQLIVTTPEKWDVVTRKGG---------DGS 129 12222222.23335679***********9977744.........567 PP HTTT-SEEEEETGGGTTSTT...........THHHHH.......... CS ResIII 143 lldefdviiiDEaHrlsakkk..........yreile.......... 169 l++ +iiiDE+H l+++ + + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 130 LGTLVSLIIIDEVHLLAEDRGavietivartQ----Ryiessqsfxx 172 888899*************9777666655541....03334556555 PP ---SEE..EEEESS- CS ResIII 170 fkkafl..lglTATp 182 +++f+ +gl+AT Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 173 XQSSFVriVGLSATL 187 333332559999997 PP == domain 2 score: 24.8 bits; conditional E-value: 1.3e-08 TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHH CS ResIII 24 ekkrglivmaTGtGKTlvaasliarlar.....kflflvprkelleq 65 + ++l+ ++TG+GKT+++ +i+r+++ k++ ++p k+l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 874 TDSNVLVGAPTGSGKTITSEIAILRMLNesrgsKAVYIAPLKALARE 920 4568999*************999999999****************** PP HHHHGGGGTGG...GEEEESSS-B---SEEEEEHHHHH......... CS ResIII 66 aleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdk 112 l ++ kk++++ ++++ ++++ d + k + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 921 RLSDW-----------KKKLGHGLGLSVVELTGDVTPDISLL--KRC 954 *****...........56666777778888888888886665..999 PP .........................HTHHHHTTT-SEEEEETGGGTT CS ResIII 113 eiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrls 159 ++i+tt k+ + s+++ ++ ++iiDE H l+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 955 DVIITTPEKWDGITRG---------WSQRDYVKQVSLLIIDEIHLLG 992 *************887.........8899999999*********877 PP ST CS ResIII 160 ak 161 + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 993 VD 994 65 PP >> PhoH PhoH-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.9 0.0 0.00063 0.78 9 47 .. 10 49 .. 3 103 .. 0.84 2 ! 9.5 0.0 0.00042 0.52 7 59 .. 862 915 .. 857 932 .. 0.81 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.00063 PhoH 9 Qkeylealk.kndivfaiGpaGtGKTylavalavealkkk 47 Q++++++ + + +++ +p+G+GKT +a+ + ++++k++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 10 QSKVFQTAYnTPENMLICAPTGAGKTNIAMLCYLHLVKQH 49 66666554437889999***************99999985 PP == domain 2 score: 9.5 bits; conditional E-value: 0.00042 PhoH 7 keQkeylealk.kndivfaiGpaGtGKTylavalavealkkkkvkri 52 Q++++++l + + v++ +p+G+GKT + + +++l++++ ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 862 PVQSQTFHVLYhTDSNVLVGAPTGSGKTITSEIAILRMLNESRGSKA 908 668888888884555788888************************99 PP PhoH 53 iltRpav 59 +++ p Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 909 VYIAPLK 915 9998865 PP >> T2SE Type II/IV secretion system protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 5.2 0.0 0.0064 7.9 113 148 .. 6 41 .. 2 56 .. 0.74 2 ! 11.8 0.0 6.2e-05 0.077 119 155 .. 869 903 .. 840 911 .. 0.74 Alignments for each domain: == domain 1 score: 5.2 bits; conditional E-value: 0.0064 T2SE 113 lkkklaevlrqavqargnilvsGgTgsGKttllnal 148 +++ +++v ++a ++ n+l+ +Tg GKt ++ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 6 FNHIQSKVFQTAYNTPENMLICAPTGAGKTNIAMLC 41 5556677888888888**************877544 PP == domain 2 score: 11.8 bits; conditional E-value: 6.2e-05 T2SE 119 evlrqavqargnilvsGgTgsGKttlln.allaeinkd 155 +vl + n+lv +TgsGKt++++ a+l +n++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 869 HVLYHT---DSNVLVGAPTGSGKTITSEiAILRMLNES 903 445555...89*************99961556666665 PP >> UvrD-helicase UvrD/REP helicase N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.7 0.0 0.00075 0.93 11 49 .. 19 56 .. 7 59 .. 0.85 2 ! 7.3 0.0 0.0019 2.4 8 41 .. 870 903 .. 861 910 .. 0.83 Alignments for each domain: == domain 1 score: 8.7 bits; conditional E-value: 0.00075 S-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEE CS UvrD-helicase 11 slggpilveAsAGsGKTfvlaerilrlikeeeiepdril 49 ++ +++l+ A G+GKT + + +l+l+k++ i+ d +l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 19 NTPENMLICAPTGAGKTNIAMLCYLHLVKQH-IDEDGVL 56 46789*************************9.9988766 PP == domain 2 score: 7.3 bits; conditional E-value: 0.0019 HHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTS CS UvrD-helicase 8 aiaslggpilveAsAGsGKTfvlaerilrlikee 41 + ++ +++lv A GsGKT + + ilr+++e Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 870 VLYHTDSNVLVGAPTGSGKTITSEIAILRMLNES 903 4557999***************999999999986 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.8 0.0 0.077 95 8 35 .. 19 46 .. 12 80 .. 0.72 2 ! 10.5 0.0 0.00031 0.39 10 58 .. 876 921 .. 870 938 .. 0.78 3 ? -2.8 0.0 4.2 5.2e+03 26 49 .. 1104 1125 .. 1103 1141 .. 0.79 Alignments for each domain: == domain 1 score: 2.8 bits; conditional E-value: 0.077 AAA_19 8 a.gnpllvvtGgPGtGKTttlaaiiaall 35 + ++++l+ ++ G+GKT + + +l+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 19 NtPENMLI-CAPTGAGKTNIAMLCYLHLV 46 45556655.88999999976666666665 PP == domain 2 score: 10.5 bits; conditional E-value: 0.00031 AAA_19 10 npllvvtGgPGtGKTttlaaiiaallaarekpgrsvllvaptgraak 56 +++lv ++ G+GKT t +i + l e g++ +++ap + a+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 876 SNVLV-GAPTGSGKTITSEIAILRMLN--ESRGSKAVYIAPLKALAR 919 56666.*********888888888884..344889999999999888 PP AAA_19 57 rl 58 + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 920 ER 921 54 PP == domain 3 score: -2.8 bits; conditional E-value: 4.2 AAA_19 26 tlaaiiaallaarekpgrsvllva 49 t++++i++++ ++++++ l ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 1104 TALDLISYCA--SDDNPKQFLHMP 1125 89999****9..556688888776 PP >> AAA_23 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.9 0.0 0.0056 6.9 19 36 .. 21 38 .. 3 52 .. 0.74 2 ? 5.3 0.0 0.017 21 4 34 .. 857 890 .. 856 893 .. 0.78 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0056 AAA_23 19 kgltlItGpNGsGKTTil 36 + lI+ p+G+GKT i Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 21 PENMLICAPTGAGKTNIA 38 45569***********97 PP == domain 2 score: 5.3 bits; conditional E-value: 0.017 AAA_23 4 lkNfrsfkdqeidF..skgltlItG.pNGsGKTT 34 +k f++ ++q++ + ++++G p+GsGKT Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 857 FKYFNPVQSQTFHVlyHTDSNVLVGaPTGSGKTI 890 78999999999999995555555555*******5 PP >> IstB_IS21 IstB-like ATP binding protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.3 0.0 0.0023 2.8 46 65 .. 20 39 .. 7 51 .. 0.84 2 ? -3.9 0.1 6.2 7.6e+03 109 123 .. 134 148 .. 132 155 .. 0.82 3 ? 0.6 0.0 0.25 3.1e+02 46 62 .. 874 890 .. 859 912 .. 0.86 4 ? 0.1 0.0 0.36 4.4e+02 106 124 .. 977 995 .. 966 1006 .. 0.84 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0023 IstB_IS21 46 qaenlvllGpsGvGKthlAi 65 + en++++ p+G+GKt +A+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 20 TPENMLICAPTGAGKTNIAM 39 569**************997 PP == domain 2 score: -3.9 bits; conditional E-value: 6.2 IstB_IS21 109 vdllilDdlgllpls 123 v l+i+D++ ll+ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 134 VSLIIIDEVHLLAED 148 689*****9998765 PP == domain 3 score: 0.6 bits; conditional E-value: 0.25 IstB_IS21 46 qaenlvllGpsGvGKth 62 + +n+++ p+G GKt Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 874 TDSNVLVGAPTGSGKTI 890 568999999******95 PP == domain 4 score: 0.1 bits; conditional E-value: 0.36 IstB_IS21 106 lakvdllilDdlgllplse 124 + +v lli+D++ ll +++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 977 VKQVSLLIIDEIHLLGVDR 995 56789*******9998775 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.8 0.0 0.029 36 2 36 .. 6 39 .. 5 161 .. 0.72 2 ? 5.7 0.0 0.0076 9.4 4 61 .. 862 920 .. 859 994 .. 0.74 Alignments for each domain: == domain 1 score: 3.8 bits; conditional E-value: 0.029 AAA_30 2 lsaeQkeaveavltsgdrvavvqGpAGtGKttvlk 36 ++ Q ++++++ ++++ + + +p G+GKt + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 6 FNHIQSKVFQTAYNTPENMLIC-APTGAGKTNIAM 39 6777999*****9999877777.********8743 PP == domain 2 score: 5.7 bits; conditional E-value: 0.0076 AAA_30 4 aeQkeaveavltsgdrvavvqGpAGtGKttvlka..lrealeaagkr 48 + Q + ++ + ++d ++v +p G+GKt + + lr + e++g + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 862 PVQSQTFHVL-YHTDSNVLVGAPTGSGKTITSEIaiLRMLNESRGSK 907 5677777655.55556666669******9886542267777778988 PP AAA_30 49 viglAptgkaakv 61 + +Ap ++ a++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 908 AVYIAPLKALARE 920 8888887776654 PP >> Zeta_toxin Zeta toxin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 0.0 0.013 16 12 34 .. 17 39 .. 7 56 .. 0.81 2 ? 4.2 0.0 0.016 20 19 41 .. 878 900 .. 871 913 .. 0.82 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.013 Zeta_toxin 12 eqekpkavllgGqpGAGKtslae 34 + +p +l++ ++GAGKt +a Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 17 AYNTPENMLICAPTGAGKTNIAM 39 4489999************9986 PP == domain 2 score: 4.2 bits; conditional E-value: 0.016 Zeta_toxin 19 vllgGqpGAGKtslaellleela 41 vl+g ++G+GKt ++e ++ ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043278 878 VLVGAPTGSGKTITSEIAILRML 900 899999*********98887774 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1665 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 495 (0.033376); expected 296.6 (0.02) Passed bias filter: 405 (0.0273077); expected 296.6 (0.02) Passed Vit filter: 43 (0.00289933); expected 14.8 (0.001) Passed Fwd filter: 12 (0.000809116); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 12 [number of targets reported over threshold] # CPU time: 0.66u 0.45s 00:00:01.11 Elapsed: 00:00:02.38 # Mc/sec: 1826.14 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 [L=783] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-47 160.6 0.0 1.2e-45 155.0 0.0 2.2 2 DEAD DEAD/DEAH box helicase 1.9e-23 82.1 0.4 4.4e-23 80.9 0.2 1.6 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.084 12.8 0.0 0.15 12.0 0.0 1.3 1 Helicase_C_2 Helicase C-terminal domain 0.09 12.5 0.0 0.18 11.6 0.0 1.5 1 ResIII Type III restriction enzyme, res subunit 0.24 10.4 0.1 0.5 9.3 0.1 1.4 1 CMS1 U3-containing 90S pre-ribosomal complex subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 155.0 0.0 4e-49 1.2e-45 1 169 [] 119 309 .. 119 309 .. 0.94 2 ? 3.3 0.0 0.017 49 51 102 .. 357 416 .. 322 432 .. 0.68 Alignments for each domain: == domain 1 score: 155.0 bits; conditional E-value: 4e-49 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx. RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq. 45 tpiQ+ aipl+l+++d++++a+TGsGKT afl+p+i+ l + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 119 TPIQKYAIPLALHNRDLMCSAQTGSGKTCAFLLPMISSLHAMlP-Di 164 89*************************************87744.36 PP ....................EEEEEESSHHHHHHHHHHHHHHTTTSS CS ....................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 ....................kalivaPtreLaeqtlnnlkqfkkypk 72 a+++aPtreLa+q++ + +++ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 165 papnaspryemsidnegvhpLAVVLAPTRELAAQIHLESRKLSFGSQ 211 *******************************************99** PP CCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 73 lrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsq 119 lr l+++gg++++ +qls l+ g+di+v+Tpgrl+d+v +g ++lsq Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 212 LRSLVLYGGSEIK-NQLSDLSFGCDIIVATPGRLIDIVDRGIISLSQ 257 ***********99.******999*****************988**** PP EEEEEEETHHHHHSTTTHHHHHHHHHHSHHCT..TSEEEEEESS-TH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF DEAD 120 vrllVlDEadrllsqgfsdqlnqilqilcdgk..rlqvivlSATlpk 164 v++l+lDEadr+l++gf++q+++i+ + + + ++q++++SAT+++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 258 VKCLILDEADRMLDMGFEPQIREIVLLRDMPPkgSRQTLMFSATFKE 304 ***********************997765555445************ PP HHHHH CS xxxxx RF DEAD 165 dvkkl 169 d++kl Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 305 DIQKL 309 *9986 PP == domain 2 score: 3.3 bits; conditional E-value: 0.017 ESSHHHHHHHHHHHHHHTTT.....SSCCEEEETTTSEHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx RF DEAD 51 aPtreLaeqtlnnlkqfkky.....pklrvlliiggvalardqlsvl 92 +P r L+ + ++ +++ + ++rv i+++++++ +++ l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 357 TPGRTLVFVQKKRTASWLCEtlryqCRVRVDDIHSDKNQQ-QREASL 402 4555555433333333333334445557888888887755.333344 PP ....TT.-SEEEEE CS ....xxxxxxxxxx RF DEAD 93 ....dngvdivvgT 102 d++v+++vgT Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 403 rrfrDGQVRVLVGT 416 58899999999999 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 80.9 0.2 1.5e-26 4.4e-23 6 78 .] 382 457 .. 378 457 .. 0.94 Alignments for each domain: == domain 1 score: 80.9 bits; conditional E-value: 1.5e-26 TTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTE CS Helicase_C 6 kgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdv 52 + ++v +h++ +q++re+ l++f++g+ +vlv t+va+rG+d+ dv Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 382 CRVRVDDIHSDKNQQQREASLRRFRDGQVRVLVGTDVAARGLDIADV 428 6688999**************************************** PP EEEEESSSSSSHHH...HHHHHTTSSTTT CS Helicase_C 53 nvVinfdlprsvts...yiQriGRtgRag 78 +Vi+fdlp s+++ yi+r+GRtgRag Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 429 AHVIQFDLPLSPDEfdtYIHRMGRTGRAG 457 ********888888888**********97 PP >> Helicase_C_2 Helicase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 4.9e-05 0.15 3 92 .. 352 438 .. 350 456 .. 0.84 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 4.9e-05 Helicase_C_2 3 ellkvvpggvlvffpSyslleevverlkeeleskkievfeek.eesr 48 + ++++pg++lvf++ ++ ++e+l+ + + + k +++r Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 352 DAIQATPGRTLVFVQKKRTASWLCETLRYQCRVRVDDIHSDKnQQQR 398 67899***********************998544335555544889* PP Helicase_C_2 49 ekvleeykeskgaillavcrgkvseGidfsddllraviivglPf 92 e l+++++++ +l+++ G+d++d + vi + lP+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 399 EASLRRFRDGQVRVLVGTD--VAARGLDIADVA--HVIQFDLPL 438 ******************9..9999***99765..577777775 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.0 6e-05 0.18 25 183 .. 132 303 .. 110 304 .. 0.73 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 6e-05 TSEEEEEESTTSTHHHHHH.HHHHHH-S................... CS ResIII 25 kkrglivmaTGtGKTlvaa.sliarlar................... 51 ++ ++ + TG+GKT + +i+ l+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 132 NRDLMCSAQTGSGKTCAFLlPMISSLHAmlpdipapnaspryemsid 178 567888999******99885256666667777777777777778888 PP ......-EEEEESSHHHHHHHHHHGGGGTGG...GEEEESSS-B--- CS ResIII 52 ......kflflvprkelleqaleefkkfeskkiefekkniavakkdk 92 +++l+p++el q + e k +f ++ ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 179 negvhpLAVVLAPTRELAAQIHLES-----RKLSFGSQL------RS 214 8888899***************666.....333332222......23 PP SEEEEEHHHHH..................................HT CS ResIII 93 lfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskses 139 l+ ++++k++ + + ++ii++t +l ++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 215 LVLYGGSEIKNQLSDLSFGCDIIVATPGRLIDIVDRG---------- 251 333344455555555677999**********999863.......... PP HHHHTTT-SEEEEETGGGTTSTT.THHHHH.........---SEEEE CS ResIII 140 lealldefdviiiDEaHrlsakkkyreile.........fkkafllg 177 +l + +++i DEa r+ ++ +i e + l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 252 -IISLSQVKCLILDEADRMLDMGFEPQIREivllrdmppKGSRQTLM 297 .34555778*******9999999866666666688887744445699 PP EESS-S CS ResIII 178 lTATpe 183 ++AT++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 298 FSATFK 303 999987 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 0.1 0.00017 0.5 180 209 .. 236 265 .. 231 270 .. 0.92 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.00017 CMS1 180 iavGtpgRiadLleeeslsvdeLkrivlDa 209 i v tpgR++d+++ + +s++++k ++lD Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038520 236 IIVATPGRLIDIVDRGIISLSQVKCLILDE 265 6799************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (783 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 368 (0.0248129); expected 296.6 (0.02) Passed bias filter: 284 (0.0191491); expected 296.6 (0.02) Passed Vit filter: 26 (0.00175308); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.36u 0.34s 00:00:00.70 Elapsed: 00:00:01.53 # Mc/sec: 1335.88 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 [L=390] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.9e-44 148.9 0.2 2.1e-43 147.7 0.1 1.6 2 DEAD DEAD/DEAH box helicase 1.2e-28 98.7 0.1 4e-28 97.0 0.0 2.0 2 Helicase_C Helicase conserved C-terminal domain 0.004 16.9 0.0 0.0085 15.9 0.0 1.7 1 ResIII Type III restriction enzyme, res subunit 0.007 15.6 0.1 0.016 14.5 0.0 1.6 2 SecA_DEAD SecA DEAD-like domain 0.0084 16.2 0.1 0.029 14.5 0.1 1.9 1 AAA_22 AAA domain ------ inclusion threshold ------ 0.013 15.2 0.1 0.039 13.7 0.0 1.9 1 AAA_19 Part of AAA domain 0.014 14.9 0.1 0.037 13.6 0.0 1.6 1 AAA_30 AAA domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 147.7 0.1 1e-46 2.1e-43 2 166 .. 42 204 .. 41 207 .. 0.96 2 ? -2.4 0.0 1.3 2.7e+03 71 102 .. 279 313 .. 257 315 .. 0.68 Alignments for each domain: == domain 1 score: 147.7 bits; conditional E-value: 1e-46 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqka 47 +iQ++ai+ i++g+dv+++++ G+GKT++f+i v+q + +t ++++a Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 42 AIQQRAIKPIIQGRDVIAQSQSGTGKTAVFSIGVLQSINSTsNETQA 88 69***************************************9999** PP EEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 48 livaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldn 94 li++PtreLaeqt + + +++ ++++++++igg+++ ++ ++ld Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 89 LILSPTRELAEQTQKVVLAIGDFMNVQCHACIGGKSIG-EDIRRLDY 134 ************************************99.88889999 PP .-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHHHHSTTTHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 95 gvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqln 141 gv++v gTpgr+ d++++++l++ +++lV+DEad++l+ gf+dq++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 135 GVQVVSGTPGRVYDMIKRRNLRTRGIKMLVIDEADEMLNRGFKDQIY 181 ******************9999999********************** PP HHHHHSHHCTTSEEEEEESS-THHH CS xxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 142 qilqilcdgkrlqvivlSATlpkdv 166 +i + l + + qv+++SATlp++v Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 182 DIYRYL--PPSTQVVLVSATLPQEV 204 *****9..667***********877 PP == domain 2 score: -2.4 bits; conditional E-value: 1.3 SSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 71 pklrvlliiggvalardqlsvl....dngvdivvgT 102 ++ v +++g+++++++++ + ++g +++++T Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 279 ANFTVSAMHGDMPQQEREAI-MeefrSGGSRVLIAT 313 56778888998886644443.347787888888877 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.0 1.9 4.1e+03 12 12 .. 194 194 .. 154 221 .. 0.48 2 ! 97.0 0.0 1.9e-31 4e-28 3 78 .] 276 351 .. 274 351 .. 0.97 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 1.9 E CS Helicase_C 12 i 12 + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 194 V 194 1 PP == domain 2 score: 97.0 bits; conditional E-value: 1.9e-31 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidl 49 +++ ++ v ++hg++pq+ere+i+e+f++g s+vl+at+v +rG+d+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 276 MRDANFTVSAMHGDMPQQEREAIMEEFRSGGSRVLIATDVWGRGLDV 322 78899****************************************** PP TTEEEEEESSSSSSHHHHHHHHTTSSTTT CS Helicase_C 50 pdvnvVinfdlprsvtsyiQriGRtgRag 78 ++v++Vin+dlp +++ yi+riGR gR+g Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 323 QQVSLVINYDLPNNRELYIHRIGRSGRFG 351 ***************************87 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 4e-06 0.0085 7 70 .. 43 105 .. 38 202 .. 0.79 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 4e-06 HHHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S.. CS ResIII 7 yQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar.. 51 Q++ai+ +++ + ++ + GtGKT v +++ ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 43 IQQRAIKPIIQ-------GRDVIAQSQSGTGKTAVFSIGVLQSINst 82 57778888773.......478889***********994333333346 PP ....-EEEEESSHHHHHHHHHHG CS ResIII 52 ....kflflvprkelleqaleef 70 ++l+l p++el eq+++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 83 snetQALILSPTRELAEQTQKVV 105 668****************9765 PP >> SecA_DEAD SecA DEAD-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.5 0.0 7.4e-06 0.016 92 210 .. 56 172 .. 39 173 .. 0.79 2 ? -3.6 0.0 2.4 5.1e+03 132 163 .. 266 297 .. 265 300 .. 0.82 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 7.4e-06 xxxxxxxxxxxxxxxxxxxx..xxxxxx.xxxxxxxxxxxxxxxxxx RF SecA_DEAD 92 GkiaemkTGeGKtlvatlpa..vlnalt.gkgvhvvTvndyLAkrda 135 ia+ + G GKt v ++ + +n+ + + + +++ LA++ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 56 DVIAQSQSGTGKTAVFSIGVlqSINSTSnETQALILSPTRELAEQTQ 102 4599*********998764411466665155677889999******* PP xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF SecA_DEAD 136 eemgplyeflglsvgvieskee..keerreaYeaditYgtnnelgfD 180 + + + +f+++++ + ++ ++ rr Y +++ gt + +D Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 103 KVVLAIGDFMNVQCHACIGGKSigEDIRRLDYGVQVVSGTPGRV-YD 148 **************9888777655899*************9886.45 PP xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SecA_DEAD 181 yLrdnlalskeekvqrelnyaivDEvDsvL 210 +++ +++ +r++++ ++DE+D++L Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 149 MIK----R--RNLRTRGIKMLVIDEADEML 172 543....3..33445999*********998 PP == domain 2 score: -3.6 bits; conditional E-value: 2.4 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SecA_DEAD 132 krdaeemgplyeflglsvgvieskeekeerre 163 kr ++++ + +++v+ ++ +++++er++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 266 KRKVDWLAAKMRDANFTVSAMHGDMPQQEREA 297 67888888888889999999999999999876 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.5 0.1 1.3e-05 0.029 13 122 .. 63 196 .. 57 206 .. 0.57 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 1.3e-05 AAA_22 13 sGvGKTtlarrlaeqldevaeaae...............karvv... 41 sG+GKT + ++q ++ +e +vv Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 63 SGTGKTAVFSIGVLQS-INSTSNEtqalilsptrelaeqTQKVVlai 108 5666666555555543.222222234455555555555522222344 PP AAA_22 42 ....fveapsstspkellkkllr.alglpakgrltteelleal.lra 82 v++ + k++ +++ r +g+++ + +t ++++++ +r Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 109 gdfmNVQCHACIGGKSIGEDIRRlDYGVQVVS-GTPGRVYDMIkRRN 154 55446666666677777777765235555555.88888886651556 PP AAA_22 83 lrrrrvglliiDEaqh.Lrseelleelrdlld..etgvklvlv 122 lr+r+ ++l+iDEa+ L + +++ d++ ++++vlv Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 155 LRTRGIKMLVIDEADEmL-NRGFKDQIYDIYRylPPSTQVVLV 196 666666**********88.544444444444444444555554 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 0.0 1.8e-05 0.039 2 62 .. 47 105 .. 46 133 .. 0.80 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 1.8e-05 AAA_19 2 aveaalagnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvll 47 a++ ++g+ +++ + GtGKT++ ++ + + + + l+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 47 AIKPIIQGRDVIA-QSQSGTGKTAVFSIGVLQSIN--STSnETQALI 90 5564555888999.99**********99******4..4555778*** PP AAA_19 48 vaptgraakrlserl 62 ++pt++ a++ ++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 91 LSPTRELAEQTQKVV 105 ********9998876 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 1.7e-05 0.037 4 106 .. 42 172 .. 40 196 .. 0.70 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 1.7e-05 AAA_30 4 aeQkeaveavltsgdrvavvqGpAGtGKttvlka..lrealeaag.k 47 a Q++a++ +++ +d ++ q GtGKt v + l+ + + ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 42 AIQQRAIKPIIQGRD--VIAQSQSGTGKTAVFSIgvLQSINSTSNeT 86 5699******98776..88999*******987644266666655449 PP AAA_30 48 rviglAptgkaakvLeee............................. 65 + ++l+pt + a++ ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 87 QALILSPTRELAEQTQKVvlaigdfmnvqchaciggksigedirrld 133 9************9999877777777777776666666666666644 PP AAA_30 66 ..lgiearTiasllerldkaeaegrkeldaktllvvDEAgmvd 106 +++ + T ++ +++++ +++ ++lv+DEA + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185026246 134 ygVQVVSGTPGRVYDMIKRRNL----RTRGIKMLVIDEADEML 172 4433444444444444444332....25666688888887665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (390 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 475 (0.0320275); expected 296.6 (0.02) Passed bias filter: 430 (0.0289933); expected 296.6 (0.02) Passed Vit filter: 36 (0.00242735); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.26u 0.46s 00:00:00.72 Elapsed: 00:00:02.00 # Mc/sec: 506.48 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043848 [L=505] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-44 150.8 0.0 2.4e-43 147.5 0.0 2.2 2 DEAD DEAD/DEAH box helicase 2.8e-24 84.7 0.0 6.3e-24 83.6 0.0 1.7 1 Helicase_C Helicase conserved C-terminal domain 0.0031 16.9 0.1 0.52 9.6 0.0 2.4 2 AAA_10 AAA-like domain ------ inclusion threshold ------ 0.04 12.8 0.0 0.072 12.0 0.0 1.3 1 mRNA_stabil mRNA stabilisation Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 147.5 0.0 6.5e-47 2.4e-43 1 168 [. 48 229 .. 48 230 .. 0.92 2 ? 0.7 0.0 0.086 3.2e+02 30 102 .. 268 376 .. 267 395 .. 0.72 Alignments for each domain: == domain 1 score: 147.5 bits; conditional E-value: 6.5e-47 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqk 46 tpiQ+++i++il+g++v+++aeTGsGKT+af++p++q+l e + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043848 48 TPIQQACIKAILDGRNVMGCAETGSGKTAAFALPMLQHLSEDpYGVY 94 89*************************************9988878* PP EEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF DEAD 47 alivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvl. 92 +i++PtreLa q+ ++++ ++++ ++r++l+igg+ l dq+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043848 95 GIILTPTRELAVQIEEQVTALGSPIGVRTCLVIGGMGLI-DQSXXXx 140 **********************************88855.5554445 PP .............TT.-SEEEEEHHHHHHHHHTTSS.HCTTEEEEEE CS .............xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF DEAD 93 .............dngvdivvgTpgrlddlvstgkl.nlsqvrllVl 125 +++++iv++Tpgrl +++++ +ls+ r+lVl Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043848 141 xxxmglidqsialSRRPHIVIATPGRLRHHLESADPpDLSRSRYLVL 187 6677778888888899*****************8888********** PP ETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 126 DEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 DEadrlls gf+++l+ ++q++ + r+q++++SATl++++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043848 188 DEADRLLSVGFESELRAVIQRMTHR-RRQTLLFSATLTSSLEQ 229 *********************9777.99**********88876 PP == domain 2 score: 0.7 bits; conditional E-value: 0.086 HHHHHHHHHHHHT.CTT.............................. CS xxxxxxxxxxxxx.xxx.............................. RF DEAD 30 aflipviqillet.kdq.............................. 45 +fl++vi++l+e+ ++q Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043848 268 CFLVAVIKRLYEQeREQsslddddisskklkkkvkksssskedapas 314 79999999999986666899999999999999999999999999998 PP ......EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHH CS ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 ......kalivaPtreLaeqtlnnlkqfkkypklrvlliiggvalar 86 ++i a + + ++ + + l q++ + + + +++ a Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043848 315 atppstSIIIFASSCKRCQLITEVLLQVGID-CVTMHSLLSQSRRA- 359 8888887777777777777777777777644.34444444444433. PP HHHHHH.TT.-SEEEEE CS xxxxxx.xxxxxxxxxx RF DEAD 87 dqlsvl.dngvdivvgT 102 l ++ ++ ++++v+T Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043848 360 ASLGKFkNQACRVLVAT 376 33333345667777766 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.6 0.0 1.7e-27 6.3e-24 4 78 .] 340 414 .. 337 414 .. 0.97 Alignments for each domain: == domain 1 score: 83.6 bits; conditional E-value: 1.7e-27 HHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTST CS Helicase_C 4 ekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlp 50 + gi ++ +h+ l+q+ r + l +f+++ ++vlvat++a+rG+d+p Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043848 340 LQVGIDCVTMHSLLSQSRRAASLGKFKNQACRVLVATDIASRGLDIP 386 5779******************************************* PP TEEEEEESSSSSSHHHHHHHHTTSSTTT CS Helicase_C 51 dvnvVinfdlprsvtsyiQriGRtgRag 78 +vn+Vin+d+p+ t+y++r+GRt+Rag Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043848 387 QVNLVINLDMPKVATDYVHRVGRTARAG 414 **************************97 PP >> AAA_10 AAA-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.8 0.0 0.0041 15 2 33 .. 62 93 .. 61 104 .. 0.89 2 ! 9.6 0.0 0.00014 0.52 217 272 .. 178 236 .. 158 269 .. 0.86 Alignments for each domain: == domain 1 score: 4.8 bits; conditional E-value: 0.0041 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF AAA_10 2 pnalvlGpsGsGKStllklivlqllaagvrvv 33 +n++ ++++GsGK+ + +l +lq+l+ +++ v Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043848 62 RNVMGCAETGSGKTAAFALPMLQHLSEDPYGV 93 69999*************99999999987765 PP == domain 2 score: 9.6 bits; conditional E-value: 0.00014 xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxx RF AAA_10 217 pkgrrkaliiDEahrllssp...egvdlldelaregRkfgvalilat 260 + r ++l++DEa rlls + e++ +++++ + R+ + + t Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043848 178 DLSRSRYLVLDEADRLLSVGfesELRAVIQRMTHRRRQTLLFSATLT 224 578899*************9999***************999999999 PP xxxxxxxxxxxx RF AAA_10 261 Qslsdlisspia 272 sl++l++ +++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043848 225 SSLEQLEQIASS 236 999999887666 PP >> mRNA_stabil mRNA stabilisation # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 1.9e-05 0.072 81 128 .. 419 466 .. 415 470 .. 0.91 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 1.9e-05 mRNA_stabil 81 llniakkqqlslkkflndylllKkslgeeltkedLiefleiviknlk 127 +l i +q+++l + +++y ++K l ee+ ++d+i fl+ + k +k Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043848 419 SLSIVSPQEVDLVHNIEEYTKIKMTLSEEVSNDDVIPFLNPIAKAMK 465 6778899*********************************9999887 PP mRNA_stabil 128 s 128 Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185043848 466 L 466 5 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (505 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 944 (0.0636505); expected 296.6 (0.02) Passed bias filter: 432 (0.0291282); expected 296.6 (0.02) Passed Vit filter: 27 (0.00182051); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.27u 0.55s 00:00:00.82 Elapsed: 00:00:02.22 # Mc/sec: 593.79 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 [L=605] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.3e-45 152.4 0.0 3.5e-44 150.2 0.0 1.9 2 DEAD DEAD/DEAH box helicase 7.8e-27 92.9 0.0 2.7e-26 91.2 0.0 1.9 2 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.014 15.2 0.0 0.026 14.3 0.0 1.4 1 ResIII Type III restriction enzyme, res subunit 0.22 10.5 0.0 0.47 9.4 0.0 1.4 1 CMS1 U3-containing 90S pre-ribosomal complex subunit 0.22 9.8 0.0 1.1 7.5 0.0 2.0 3 DUF1253 Protein of unknown function (DUF1253) Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 150.2 0.0 1.2e-47 3.5e-44 1 168 [. 173 352 .. 173 353 .. 0.95 2 ? -0.4 0.0 0.23 6.8e+02 71 102 .. 424 458 .. 411 476 .. 0.78 Alignments for each domain: == domain 1 score: 150.2 bits; conditional E-value: 1.2e-47 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT.. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq.. 45 tp+Q+ +ip l g d++++a+TGsGKT+ fl p i+ +l++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 173 TPVQKYSIPIGLAGADMMACAQTGSGKTAGFLFPSISSMLTH--Gpl 217 79**********************************999874..246 PP .............EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEET CS .............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 .............kalivaPtreLaeqtlnnlkqfkkypklrvllii 79 ali+aPtreLa q+++++++f+ +++r ++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 218 ilpggtssrsiypTALILAPTRELAGQIYDEAQKFCYCTGIRPVVVY 264 9***********************************99********* PP TTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 80 ggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlD 126 gg ++ +q + l++g+d++v+Tpgrl+dl+++g+++l +r+l+lD Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 265 GGANIH-NQMRELERGADMLVATPGRLVDLIERGRIKLDAIRFLILD 310 ****99.999999999******************99*********** PP THHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 127 EadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 Eadr+l++gf++q+++i+++ ++++q+ ++SAT+p+++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 311 EADRMLDMGFEPQIRRIVEQEGMPTERQTFMFSATFPTEIQR 352 ********************888999***********98876 PP == domain 2 score: -0.4 bits; conditional E-value: 0.23 SSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 71 pklrvlliiggvalardqlsvl....dngvdivvgT 102 ++ + i+g+++++ ++++ l +++ i+v+T Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 424 NNFPASSIHGDKSQR-EREEALrlfkTGRTPILVAT 458 566778899999944.66666667999999***999 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.0 1.7 5.2e+03 37 52 .. 118 133 .. 109 135 .. 0.81 2 ! 91.2 0.0 9.1e-30 2.7e-26 3 78 .] 421 496 .. 419 496 .. 0.96 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 1.7 EEESGGGTSSSTSTTE CS Helicase_C 37 lvatnvaerGidlpdv 52 ++t+ + Gi++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 118 FDTTDSQSIGINFDKY 133 6789999999999875 PP == domain 2 score: 91.2 bits; conditional E-value: 9.1e-30 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidl 49 l ++++++ +hg+ +q+eree l+ f++g++++lvat+va+rG+d+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 421 LCRNNFPASSIHGDKSQREREEALRLFKTGRTPILVATDVASRGLDI 467 5578899**************************************** PP TTEEEEEESSSSSSHHHHHHHHTTSSTTT CS Helicase_C 50 pdvnvVinfdlprsvtsyiQriGRtgRag 78 p+v+ Vinfdlp ++y++riGRtgR+g Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 468 PNVTQVINFDLPSHIDDYVHRIGRTGRVG 496 ***************************86 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.3 0.0 8.8e-06 0.026 32 183 .. 193 347 .. 185 348 .. 0.79 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 8.8e-06 ESTTSTHHHHHH..HHHHHH-S.................-EEEEESS CS ResIII 32 maTGtGKTlvaa..sliarlar.................kflflvpr 59 + TG+GKT + s i+ +++ +l+l+p+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 193 AQTGSGKTAGFLfpS-ISSMLThgplilpggtssrsiypTALILAPT 238 68******9887664.33333347778888888888899******** PP HHHHHHHHHHGGGGTGG...GEEEESSS-B---SEEEEEHHHHH... CS ResIII 60 kelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkee 106 +el q ++e +k++ ++ ++v + ++++ ++ +++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 239 RELAGQIYDEA----QKFCYCTGIRPVVVYGGANIHNQMRELER--- 278 **********9....77888888888888888776666666655... PP ...............................HTHHHHTTT-SEEEEE CS ResIII 107 kkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiD 153 ++++++t +l +e+ + +ld+ ++i D Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 279 ----GADMLVATPGRLVDLIER-----------GRIKLDAIRFLILD 310 ....7999*********99876...........456688899***** PP TGGGTTSTT....THHHHH....---SEEEEEESS-S CS ResIII 154 EaHrlsakkk...yreile....fkkafllglTATpe 183 Ea r+ ++ r+i+e + + ++AT++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 311 EADRMLDMGFepqIRRIVEqegmPTERQTFMFSATFP 347 *****99998777777777999967777899999985 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.4 0.0 0.00016 0.47 182 209 .. 284 311 .. 277 316 .. 0.92 Alignments for each domain: == domain 1 score: 9.4 bits; conditional E-value: 0.00016 CMS1 182 vGtpgRiadLleeeslsvdeLkrivlDa 209 v tpgR++dL+e + +++d ++ ++lD Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 284 VATPGRLVDLIERGRIKLDAIRFLILDE 311 78************************96 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.0 0.32 9.6e+02 38 57 .. 230 249 .. 228 257 .. 0.81 2 ? -2.4 0.0 0.37 1.1e+03 205 233 .. 326 354 .. 322 361 .. 0.76 3 ? 7.5 0.0 0.00037 1.1 302 386 .. 403 485 .. 389 500 .. 0.83 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 0.32 DUF1253 38 pkvLillpfrniakevvdll 57 p+ Lil p+r+ a ++ d Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 230 PTALILAPTRELAGQIYDEA 249 788**********9987765 PP == domain 2 score: -2.4 bits; conditional E-value: 0.37 DUF1253 205 kwvldgqaknyRQtiilssietpeinslf 233 +v ++ + RQt ++s++ +ei+ l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 326 RIVEQEGMPTERQTFMFSATFPTEIQRLA 354 55556667778********9999998876 PP == domain 3 score: 7.5 bits; conditional E-value: 0.00037 DUF1253 302 gvlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkk 348 vlif+ + +++ l ++++ +i+ s+++ ++a +lFk+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 403 LVLIFVETKRGADYLEECLCRNNFPASSIHGDKSQREREEALRLFKT 449 567777666544456788889999999******************** PP DUF1253 349 grkkiLLvteRlhfyrRykikgvkkvifyslPefpefY 386 gr++iL+ t+ + r i +v++vi + lP++ + Y Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185022250 450 GRTPILVATDVAS--RGLDIPNVTQVINFDLPSHIDDY 485 *********9775..8899************9997766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (605 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 312 (0.021037); expected 296.6 (0.02) Passed bias filter: 263 (0.0177331); expected 296.6 (0.02) Passed Vit filter: 35 (0.00235992); expected 14.8 (0.001) Passed Fwd filter: 6 (0.000404558); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.31u 0.33s 00:00:00.64 Elapsed: 00:00:01.14 # Mc/sec: 1373.26 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 [L=413] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.5e-42 143.7 0.1 5.9e-42 143.0 0.1 1.3 1 DEAD DEAD/DEAH box helicase 1.2e-25 89.1 0.1 2.1e-25 88.3 0.1 1.4 1 Helicase_C Helicase conserved C-terminal domain 0.0015 18.4 0.0 0.0077 16.0 0.0 2.0 1 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.012 14.2 0.1 0.016 13.7 0.1 1.1 1 RINT1_TIP1 RINT-1 / TIP-1 family 0.075 12.1 0.0 0.13 11.3 0.0 1.3 1 DS Deoxyhypusine synthase 0.1 12.5 0.1 0.27 11.1 0.0 1.6 1 Helicase_C_2 Helicase C-terminal domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 143.0 0.1 2.4e-45 5.9e-42 2 165 .. 64 225 .. 63 228 .. 0.94 Alignments for each domain: == domain 1 score: 143.0 bits; conditional E-value: 2.4e-45 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqka 47 piQ+eaip il g+dvl++a+ G+GKT+af+ip+++++ ++ ++ ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 64 PIQEEAIPIILAGRDVLARAKNGTGKTAAFIIPCLEKVDTSvNHIQV 110 8*************************************9998888** PP EEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 48 livaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldn 94 l+++PtreLa qt +k+++k++ ++v++ +gg++l+ d+ +l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 111 LLLVPTRELALQTSAIVKEIGKHMAVQVMVTTGGTNLR-DDIMRLYS 156 ************************************88.78888867 PP .-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHHHHSTTTHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 95 gvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqln 141 v+i+vgTpgr++dl +g +ls+++++V+DEad+lls +f++ l+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 157 PVHILVGTPGRIHDLADKGIADLSHCSTFVMDEADKLLSPEFQPVLE 203 7****************9878************************** PP HHHHHSHHCTTSEEEEEESS-THH CS xxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 142 qilqilcdgkrlqvivlSATlpkd 165 ++++++ ++q++++SAT+p + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 204 ALIEKTAA--ERQILLFSATFPVT 225 *****955..5*********9954 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 88.3 0.1 8.5e-29 2.1e-25 3 78 .] 296 371 .. 294 371 .. 0.97 Alignments for each domain: == domain 1 score: 88.3 bits; conditional E-value: 8.5e-29 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidl 49 ++ g++++++h++++q++r++++++f++g+++ lv+++ + rGid+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 296 ISELGYSCFYIHAKMKQEDRNRVFHEFRNGSTRHLVSSDLFTRGIDI 342 6789******************************************* PP TTEEEEEESSSSSSHHHHHHHHTTSSTTT CS Helicase_C 50 pdvnvVinfdlprsvtsyiQriGRtgRag 78 ++vnvVinfd+p++ ++y++riGR gR+g Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 343 QSVNVVINFDFPKTAETYLHRIGRSGRFG 371 ***************************87 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.0 3.1e-06 0.0077 6 182 .. 64 222 .. 60 224 .. 0.71 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 3.1e-06 HHHHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S. CS ResIII 6 pyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar. 51 p Qeeai +l+ + +l + GtGKT + +++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 64 PIQEEAIPIILA-------GRDVLARAKNGTGKTAAFIIPCLEKVDt 103 566777766663.......3667788999******999766666667 PP .....-EEEEESSHHHHHHHHHHGGGGTGG...GEEEESSS-B---S CS ResIII 52 .....kflflvprkelleqaleefkkfeskkiefekkniavakkdkl 93 ++l+lvp++el q+ k++ +++ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 104 svnhiQVLLLVPTRELALQTSAIV-----------KEIGKHMAVQVM 139 8888****************9555...........222333333444 PP EEEEEHHHHH..................................HTH CS ResIII 94 fgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendesksesl 140 ++ + ++ d ++ + i++ t ++h +++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 140 VTTGGTNLRDDIMRLYSPVHILVGTPGRIHDLADKG----------- 175 455666677777777888888888888888776542........... PP HHHTTT-SEEEEETGGGTTSTT.THHHHH......---SEEEEEESS CS ResIII 141 ealldefdviiiDEaHrlsakkkyreile......fkkafllglTAT 181 a l + +++DEa +l +++ ++ +le + +l ++AT Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 176 IADLSHCSTFVMDEADKLLSPE-FQPVLEaliektAAERQILLFSAT 221 2345567789999999999999.888888887777667778888988 PP - CS ResIII 182 p 182 + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 222 F 222 7 PP >> RINT1_TIP1 RINT-1 / TIP-1 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.7 0.1 6.5e-06 0.016 208 283 .. 245 318 .. 228 340 .. 0.80 Alignments for each domain: == domain 1 score: 13.7 bits; conditional E-value: 6.5e-06 HHHHHHHHHTHHHHHHHHHHHHHT----SCEEHHHHHHHHHHHHHHH CS RINT1_TIP1 208 siqlelldqflerLlsaleeyllmtstqesleddaelerlckvlnaa 254 +++l+ + qf + + + + l +t s+ + ++ + +c++ n + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 245 ELTLRGITQFYAFVEERQKVHCL--NTLFSKLEINQSIIFCNSVNRV 289 66677777777777777666666..7788888999999********* PP HHHHHHHHHHCTSHHHH............ CS RINT1_TIP1 255 eylekkLedwsddvfFlqervkenkdkgn 283 e+l kk++++ f++++++k+ + + + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 290 ELLAKKISELGYSCFYIHAKMKQEDRNRV 318 **********************9988765 PP >> DS Deoxyhypusine synthase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 5.3e-05 0.13 24 138 .. 94 212 .. 83 226 .. 0.79 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 5.3e-05 HHHHHHHHHS---SSEEEEEE-THHHHSTHHHHHHHHHHTT--SEEE CS DS 24 ileemeekrekleeitiFlgytsnlissGlReiirylvqekkvdalv 70 i+ +e+ +++ ++i++ l + + ++ i++ + ++ v+++v Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 94 IIPCLEKVDTSVNHIQVLLLVPTRELALQTSAIVKEIGKHMAVQVMV 140 55566666666777777777766666667778999************ PP E-HH.HHHHHHHTTTS-.-EE--TT--HHHHHHTTEEEETT..EEEE CS DS 71 ttag.gveedlikclgp.tylgdfevddkeLrekginRign..llvp 113 tt+g ++ +d+++ ++p ++l + ++L++kgi + +v Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 141 TTGGtNLRDDIMRLYSPvHILVGTPGRIHDLADKGIADLSHcsTFVM 187 **87589*********97778888899999******99875226899 PP HHHHHHHHHHHHHHHHHHHHHHHHS CS DS 114 nenyikfeeylveileklleeqeke 138 +e+ + + +++le l+e+ e Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 188 DEADKLLSPEFQPVLEALIEKTAAE 212 9999999999999999998877654 PP >> Helicase_C_2 Helicase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 0.00011 0.27 10 79 .. 277 344 .. 268 361 .. 0.81 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00011 Helicase_C_2 10 ggvlvffpSyslleevverlkeeleskkievfee...keesrekvle 53 ++ ++f++S +e ++++++e + s + + + k+e+r++v++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 277 NQSIIFCNSVNRVELLAKKISELGYS-CFYI--HakmKQEDRNRVFH 320 57899****************98843.3333..233589******** PP Helicase_C_2 54 eykeskgaillavcrgkvseGidfsd 79 e+++++ l+++ + Gid++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025064 321 EFRNGSTRHLVSSD--LFTRGIDIQS 344 *************9..*******984 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (413 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 432 (0.0291282); expected 296.6 (0.02) Passed bias filter: 369 (0.0248803); expected 296.6 (0.02) Passed Vit filter: 35 (0.00235992); expected 14.8 (0.001) Passed Fwd filter: 6 (0.000404558); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.25u 0.42s 00:00:00.67 Elapsed: 00:00:01.48 # Mc/sec: 728.42 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028024 [L=540] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-29 102.6 0.1 3.4e-29 101.4 0.0 1.6 2 DEAD DEAD/DEAH box helicase 1.5e-22 79.2 0.2 2.8e-22 78.3 0.1 1.5 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.049 13.4 0.5 0.18 11.6 0.0 2.2 2 DUF2196 Uncharacterized conserved protein (DUF2196) 0.15 11.8 0.1 0.29 10.8 0.1 1.4 1 Peptidase_C10 Peptidase C10 family Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 101.4 0.0 9.3e-33 3.4e-29 2 168 .. 104 270 .. 103 271 .. 0.86 2 ? -2.6 0.0 0.9 3.3e+03 62 102 .. 345 389 .. 320 392 .. 0.64 Alignments for each domain: == domain 1 score: 101.4 bits; conditional E-value: 9.3e-33 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqka 47 +iQa+a+p il+g++++++a+ G+GKTlaf++ +++++ + ++ +a Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028024 104 QIQAAALPIILRGKNLIAQAQSGAGKTLAFVVGLLNKIDVSsDSLQA 150 79************************************9987777** PP EEEESSHHHHHHHHHHHHHHTTT..SSCCEEEETTTSEHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF DEAD 48 livaPtreLaeqtlnnlkqfkky..pklrvlliiggvalardqlsvl 92 ++++Ptre a q+++ ++ p+lrv + +g++l+ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028024 151 ICLSPTREVADQIYQLGVLPISSriPGLRVERVLKGMQLR-GR---- 192 **************98766666568***********9977.33.... PP TT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHHHHST.TTHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF DEAD 93 dngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsq.gfsd 138 ++++vvgTpg+++dl+ ++ l+ +v+++V+DEad++l + + ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028024 193 -SRAHLVVGTPGKVKDLLTSQYLHPGNVKVFVVDEADEMLHNaN-KR 237 .3599**************99999999**************853.33 PP ...HHHHHHHHSHHCTTSEEEEEESS-THHHHH CS ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 139 ...qlnqilqilcdgkrlqvivlSATlpkdvkk 168 ++++ + + + qv+++SAT++++v++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028024 238 eslAHDTLFVRQAIHPSAQVLFFSATFSDEVRD 270 45666666555444557**********988865 PP == domain 2 score: -2.6 bits; conditional E-value: 0.9 HHHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 62 nnlkqfkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 n++++++ + ++ v ++++ + +++++v+ ++ +++++T Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028024 345 NEVSRMMVEEGFTVSTLHSKLSSGEERDRVMnafrAGESKVLITT 389 455555555566666666666655555555555667778888887 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 78.3 0.1 7.7e-26 2.8e-22 5 78 .] 353 436 .. 349 436 .. 0.90 Alignments for each domain: == domain 1 score: 78.3 bits; conditional E-value: 7.7e-26 HTTS-EEEESTTSTH.HHHHHHHHHHHTTSSSEEEESGGGTSSSTST CS Helicase_C 5 kkgikvailhgelpq.nereeileqfnagkskvlvatnvaerGidlp 50 ++g+ v lh++l++ +er+++++ f+ag+skvl++tnv++rG+d+p Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028024 353 EEGFTVSTLHSKLSSgEERDRVMNAFRAGESKVLITTNVLARGVDVP 399 68999******9987478***************************** PP TEEEEEESSSSSSHHH.........HHHHHTTSSTTT CS Helicase_C 51 dvnvVinfdlprsvts.........yiQriGRtgRag 78 +v vV+n+dlp+ +++ yi+riGRtgR+g Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028024 400 AVAVVVNYDLPTKRRGrtviadvdtYIHRIGRTGRFG 436 **********777777777777777**********97 PP >> DUF2196 Uncharacterized conserved protein (DUF2196) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.0 4.8e-05 0.18 12 50 .. 177 222 .. 173 226 .. 0.74 2 ? -2.2 0.0 0.95 3.5e+03 15 38 .. 401 424 .. 399 439 .. 0.59 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 4.8e-05 DUF2196 12 GleVeivlkkdqrtGkl.......teGivkdiLTksstHphGIKVr 50 Gl+Ve vlk q G+ t G vkd+LT+ Hp +KV Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028024 177 GLRVERVLKGMQLRGRSrahlvvgTPGKVKDLLTSQYLHPGNVKVF 222 777777777777666533333333889*****************96 PP == domain 2 score: -2.2 bits; conditional E-value: 0.95 DUF2196 15 VeivlkkdqrtGklteGivkdiLT 38 V++v++ d t ++ + +++d+ T Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028024 401 VAVVVNYDLPTKRRGRTVIADVDT 424 666666666666666666666544 PP >> Peptidase_C10 Peptidase C10 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.1 7.7e-05 0.29 28 117 .. 292 379 .. 289 384 .. 0.91 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 7.7e-05 HHHHHHHHT--SB--S-EEEESTT-TEEEE-GGG-B--GGG--S-TT CS Peptidase_C10 28 laqilkyhkwPkkglgsvsytvksdqklsadfekseydWknmkeayk 74 l+ i++ + P+++++s + +++++ + + ++ y +++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028024 292 LSEIMQVWVNPSNRKNSWASDSEGSS--KLGVLQDIYSMMTIQQSIV 336 6789********99999877777777..78899999*********** PP S---HHHHHHHHHHHHHHHHHTT-B-B-T--B--HHHHHHHHH CS Peptidase_C10 75 eksseeqaeavakLmrdvGvavkmkYssdgsgaysknavkaLk 117 +s ++a++v+++m + G v+ +s+ +sg + ++++a++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028024 337 FVESIKAANEVSRMMVEEGFTVSTLHSKLSSGEERDRVMNAFR 379 *99**********************************999987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (540 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 788 (0.053132); expected 296.6 (0.02) Passed bias filter: 534 (0.0360057); expected 296.6 (0.02) Passed Vit filter: 48 (0.00323646); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.29u 0.56s 00:00:00.85 Elapsed: 00:00:02.23 # Mc/sec: 632.10 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023198 [L=769] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-43 147.5 0.0 1.3e-41 141.8 0.0 2.7 2 DEAD DEAD/DEAH box helicase 7.3e-29 99.4 0.1 2e-28 98.0 0.0 1.8 1 Helicase_C Helicase conserved C-terminal domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 141.8 0.0 1.8e-45 1.3e-41 2 168 .. 359 555 .. 358 556 .. 0.89 2 ? 2.6 0.0 0.011 82 61 102 .. 619 663 .. 600 670 .. 0.80 Alignments for each domain: == domain 1 score: 141.8 bits; conditional E-value: 1.8e-45 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT.. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.. RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq.. 45 piQ++aip ++ +d+++ aeTGsGKT+aflip+++ +l+ ++q Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023198 359 PIQRQAIPIGMDRRDIIGIAETGSGKTAAFLIPLLEYMLDLpQHQik 405 8*************************************9987777** PP .......EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHH CS .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 .......kalivaPtreLaeqtlnnlkqfkkypklrvlliiggvala 85 a+++aPtreLa+q+ +++ +++k +++++++++gg++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023198 406 rccdegpLAVVLAPTRELAQQIQEECIKLAKFTSFETVCVVGGQSIE 452 *********************************************99 PP HHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 86 rdqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrll 132 +q l++gv+iv+gTpgr++d ++++ l l q++++VlDEadr+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023198 453 -EQGFILRKGVEIVIGTPGRMVDCIESNYLVLNQCNYVVLDEADRMI 498 .999999999*****************999***************** PP STTTHHHHHHHHHHSHHCT......T...............SEEEEE CS xxxxxxxxxxxxxxxxxxx......x...............xxxxxx RF DEAD 133 sqgfsdqlnqilqilcdgk......r...............lqvivl 158 ++gf++q+ q+l+++ + + + + ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023198 499 DMGFEPQVVQVLEAMGGLLksedenEleeqvkhakrgdtlyRVTAMF 545 ******9999777764433444444044455556667888678**** PP ESS-THHHHH CS xxxxxxxxxx RF DEAD 159 SATlpkdvkk 168 SAT+p +v++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023198 546 SATMPPEVER 555 *****99987 PP == domain 2 score: 2.6 bits; conditional E-value: 0.011 HHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 61 lnnlkqfkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 + + ++++ ++r+ +++gg +++ ++++ l ++ ++++v+T Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023198 619 GDVVGRYAETAGFRCGVLHGGRSQD-QREETLelfrSGDIQVLVAT 663 5566677777999********9966.33334457999999999999 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.0 0.0 2.7e-32 2e-28 4 78 .] 627 701 .. 624 701 .. 0.97 Alignments for each domain: == domain 1 score: 98.0 bits; conditional E-value: 2.7e-32 HHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTST CS Helicase_C 4 ekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlp 50 e g+++ +lhg+ +q++ree+le f++g+ +vlvat+va+rG+d+p Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023198 627 ETAGFRCGVLHGGRSQDQREETLELFRSGDIQVLVATDVAGRGLDIP 673 6789******************************************* PP TEEEEEESSSSSSHHHHHHHHTTSSTTT CS Helicase_C 51 dvnvVinfdlprsvtsyiQriGRtgRag 78 dv++Vin+d+p ++y +riGRtgRag Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023198 674 DVTYVINYDMPNKIENYCHRIGRTGRAG 701 **************************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (769 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1907 (0.128582); expected 296.6 (0.02) Passed bias filter: 333 (0.022453); expected 296.6 (0.02) Passed Vit filter: 61 (0.00411301); expected 14.8 (0.001) Passed Fwd filter: 15 (0.0010114); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.51u 0.41s 00:00:00.92 Elapsed: 00:00:01.46 # Mc/sec: 1374.89 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 [L=613] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-44 151.8 0.0 4.6e-44 149.8 0.0 1.8 2 DEAD DEAD/DEAH box helicase 6.3e-27 93.2 0.0 1.4e-26 92.1 0.0 1.6 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.021 14.6 0.0 0.049 13.4 0.0 1.6 1 ResIII Type III restriction enzyme, res subunit 0.2 10.0 0.0 1.9 6.8 0.0 2.2 3 DUF1253 Protein of unknown function (DUF1253) Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 149.8 0.0 1.2e-47 4.6e-44 1 168 [. 181 360 .. 181 361 .. 0.95 2 ? -0.7 0.0 0.23 8.5e+02 72 102 .. 433 466 .. 420 486 .. 0.78 Alignments for each domain: == domain 1 score: 149.8 bits; conditional E-value: 1.2e-47 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT.. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq.. 45 tp+Q+ +ip l g d++++a+TGsGKT+ fl p+i+ +l + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 181 TPVQKYSIPIGLAGADMMACAQTGSGKTAGFLFPAISSMLLQ--Gpl 225 79**********************************888763..246 PP .............EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEET CS .............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 .............kalivaPtreLaeqtlnnlkqfkkypklrvllii 79 ali+aPtreLa q+++++ +f+ +++r ++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 226 pvpggassrsiypTALILAPTRELASQIYDEALKFCYCTGIRPVVVY 272 79**********************************99********* PP TTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 80 ggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlD 126 gg ++ +q + l++g+d++v+Tpgrl+dl+++g+++l +r+l+lD Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 273 GGANIH-NQMRELERGADMLVATPGRLVDLIERGRIKLDVIRFLILD 318 ****99.999999999******************99*999******* PP THHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 127 EadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 Eadr+l++gf++q+++i+++ ++++q+ ++SAT+p+++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 319 EADRMLDMGFEPQIRRIVEQEGMPTERQTFMFSATFPTEIQR 360 ********************888999***********98876 PP == domain 2 score: -0.7 bits; conditional E-value: 0.23 SCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 72 klrvlliiggvalardqlsvl....dngvdivvgT 102 ++ + i+g+++++ ++++ l +++ i+v+T Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 433 SFPASSIHGDKSQR-EREEALrlfkTGRTPILVAT 466 55677889999844.666666679999999**999 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 92.1 0.0 3.8e-30 1.4e-26 5 78 .] 431 504 .. 427 504 .. 0.96 Alignments for each domain: == domain 1 score: 92.1 bits; conditional E-value: 3.8e-30 HTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTT CS Helicase_C 5 kkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpd 51 ++ +++ +hg+ +q+eree l+ f++g++++lvat+va+rG+d+p+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 431 RNSFPASSIHGDKSQREREEALRLFKTGRTPILVATDVASRGLDIPN 477 5678999**************************************** PP EEEEEESSSSSSHHHHHHHHTTSSTTT CS Helicase_C 52 vnvVinfdlprsvtsyiQriGRtgRag 78 v+ Vinfdlp + ++y++riGRtgR+g Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 478 VTQVINFDLPSNIDDYVHRIGRTGRVG 504 *************************86 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.4 0.0 1.3e-05 0.049 32 182 .. 201 354 .. 193 356 .. 0.76 Alignments for each domain: == domain 1 score: 13.4 bits; conditional E-value: 1.3e-05 ESTTSTHHHHHH..HHHHHH-S................-EEEEESSH CS ResIII 32 maTGtGKTlvaa..sliarlar................kflflvprk 60 + TG+GKT + ++ + l++ +l+l+p++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 201 AQTGSGKTAGFLfpAISSMLLQgplpvpggassrsiypTALILAPTR 247 68******987755444455558888888888888899********* PP HHHHHHHHHGGGGTGG...GEEEESSS-B---SEEEEEHHHHH.... CS ResIII 61 elleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeek 107 el +q ++e k++ ++ ++v + ++++ ++ +++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 248 ELASQIYDEA----LKFCYCTGIRPVVVYGGANIHNQMRELER---- 286 *******777....57777777777777777665555555555.... PP ..............................HTHHHHTTT-SEEEEET CS ResIII 108 kkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDE 154 ++++++t +l +e+ + +ld ++i DE Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 287 ---GADMLVATPGRLVDLIER-----------GRIKLDVIRFLILDE 319 ...788999999999988875...........345566777999999 PP GGGTTSTT....THHHHH....---SEEEEEESS- CS ResIII 155 aHrlsakkk...yreile....fkkafllglTATp 182 a r+ ++ r+i+e + + ++AT+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 320 ADRMLDMGFepqIRRIVEqegmPTERQTFMFSATF 354 99999998877777777789886667779999997 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.0 0.076 2.8e+02 38 62 .. 238 262 .. 236 270 .. 0.86 2 ? -2.4 0.0 0.3 1.1e+03 205 233 .. 334 362 .. 330 369 .. 0.76 3 ? 6.8 0.0 0.0005 1.9 303 387 .. 412 494 .. 395 506 .. 0.82 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 0.076 DUF1253 38 pkvLillpfrniakevvdlliklle 62 p+ Lil p+r+ a ++ d +k++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 238 PTALILAPTRELASQIYDEALKFCY 262 788************9998888765 PP == domain 2 score: -2.4 bits; conditional E-value: 0.3 DUF1253 205 kwvldgqaknyRQtiilssietpeinslf 233 +v ++ + RQt ++s++ +ei+ l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 334 RIVEQEGMPTERQTFMFSATFPTEIQRLA 362 55556667778********9999998876 PP == domain 3 score: 6.8 bits; conditional E-value: 0.0005 DUF1253 303 vlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkg 349 vlif+ + +++ l ++++ +i+ s+++ ++a +lFk+g Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 412 VLIFVETKRGADYLEECLCRNSFPASSIHGDKSQREREEALRLFKTG 458 6666666544444677788888888999999**************** PP DUF1253 350 rkkiLLvteRlhfyrRykikgvkkvifyslPefpefYs 387 r++iL+ t+ + r i +v++vi + lP++ + Y Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185028924 459 RTPILVATDVAS--RGLDIPNVTQVINFDLPSNIDDYV 494 ********9775..8899*************9987665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (613 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 320 (0.0215764); expected 296.6 (0.02) Passed bias filter: 262 (0.0176657); expected 296.6 (0.02) Passed Vit filter: 43 (0.00289933); expected 14.8 (0.001) Passed Fwd filter: 10 (0.000674263); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.32u 0.38s 00:00:00.70 Elapsed: 00:00:01.12 # Mc/sec: 1416.05 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 [L=709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-45 154.2 0.0 2.4e-44 150.7 0.0 2.2 2 DEAD DEAD/DEAH box helicase 4.2e-25 87.4 0.0 1.2e-24 86.0 0.0 1.8 1 Helicase_C Helicase conserved C-terminal domain 0.0068 16.1 3.9 0.21 11.3 0.6 3.4 3 AAA_19 Part of AAA domain ------ inclusion threshold ------ 0.02 15.0 0.0 0.076 13.1 0.0 2.0 1 AAA_22 AAA domain 0.03 13.9 0.1 5.7 6.6 0.0 2.5 2 DsrH DsrH like protein Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 150.7 0.0 8.2e-48 2.4e-44 1 168 [. 137 307 .. 137 308 .. 0.95 2 ? 0.7 0.0 0.1 3e+02 72 102 .. 384 417 .. 354 428 .. 0.83 Alignments for each domain: == domain 1 score: 150.7 bits; conditional E-value: 8.2e-48 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx. RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq. 45 tp+Qa++ip +l g+d++++a TGsGKT+af++p +++ll +d Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 137 TPVQAKVIPFALAGRDICASALTGSGKTAAFALPFLERLLFRpRDAt 183 79*************************************98766669 PP ..EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHH CS ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 ..kalivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqls 90 ++l+v+PtreLa q+++ l ++++ +++ ++li gg++ r q++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 184 aiRVLVVTPTRELATQIYSVLLKLAQFTDVTCALICGGKKDLRSQET 230 ****************************************999**** PP HHTT.-SEEEEEHHHHHHHHHTTSS.HCTTEEEEEEETHHHHHSTTT CS xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF DEAD 91 vldngvdivvgTpgrlddlvstgkl.nlsqvrllVlDEadrllsqgf 136 l+n++d+vv Tpgr++d++++ ++ +l ++ +lVlDE+drll+ gf Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 231 TLRNRPDVVVCTPGRIIDHLRNSRSvTLDDLDVLVLDEVDRLLDLGF 277 **********************88868888***************** PP HHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 137 sdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 ++++++i++ + + +q++++SAT+++ v++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 278 QEEVEEIVKYCPHS--RQTMLFSATMTSGVDD 307 **********9555..**********988876 PP == domain 2 score: 0.7 bits; conditional E-value: 0.1 SCCEEEETTTSEHHHHHHHHH...TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF DEAD 72 klrvlliiggvalardqlsvl...dngvdivvgT 102 ++ ++ ++g++++ ++++ l +++++++++T Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 384 GVAACELHGDMTQPQREQALLrftRGECQVLIAT 417 6788999***9977666666699999******99 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.0 0.0 3.9e-28 1.2e-24 3 78 .] 380 455 .. 378 455 .. 0.97 Alignments for each domain: == domain 1 score: 86.0 bits; conditional E-value: 3.9e-28 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidl 49 l + g+ ++ lhg+++q +re+ l +f++g+++vl+at+v++rG+d+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 380 LLDSGVAACELHGDMTQPQREQALLRFTRGECQVLIATDVVARGLDI 426 6678999**************************************** PP TTEEEEEESSSSSSHHHHHHHHTTSSTTT CS Helicase_C 50 pdvnvVinfdlprsvtsyiQriGRtgRag 78 +v++V n ++prs+++y++r+GRt+Rag Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 427 SAVQTVLNAEMPRSTSTYVHRVGRTARAG 455 ***************************97 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.0 1.4 4.1e+03 43 58 .. 129 144 .. 120 149 .. 0.78 2 ! 11.3 0.6 7.2e-05 0.21 7 62 .. 148 204 .. 142 227 .. 0.75 3 ? 3.5 0.0 0.019 58 24 54 .. 441 470 .. 440 486 .. 0.85 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 1.4 AAA_19 43 rsvllvaptgraakrl 58 + + +v+pt +ak + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 129 EACGYVNPTPVQAKVI 144 448899***9999976 PP == domain 2 score: 11.3 bits; conditional E-value: 7.2e-05 AAA_19 7 lagnpllvvtGgPGtGKTttlaaiiaall..aarekpgrsvllvapt 51 lag+ +++ ++ G+GKT++ a ++l + r++ +vl+v+pt Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 148 LAGRDICA-SALTGSGKTAAFALPFLERLlfRPRDATAIRVLVVTPT 193 45788999.9999*****6555444444468554444899******* PP AAA_19 52 graakrlserl 62 ++ a ++ ++l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 194 RELATQIYSVL 204 ****9997777 PP == domain 3 score: 3.5 bits; conditional E-value: 0.019 AAA_19 24 Tttlaaiiaallaarekp.grsvllvaptgra 54 T t ++++ + + r+ grsv lv+ +r Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 441 TSTYVHRVGRTA--RAGRnGRSVTLVSDGRRK 470 8899********..66788*******987775 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.0 2.6e-05 0.076 12 110 .. 158 287 .. 153 307 .. 0.67 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 2.6e-05 AAA_22 12 esGvGKTtlarrlaeqldevaeaaekarvvfveapsst..spkellk 56 +G+GKT + ++++ + +++a++++v + +t +++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 158 LTGSGKTAAFALPFLERLL--FRPRDATAIRVLVVTPTreLATQIYS 202 5789999887776665432..23334444433333333112455555 PP AAA_22 57 kllralglpakg....................rltteell.eallra 82 ll+ + r + ++ +++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 203 VLLKLAQFTDVTcalicggkkdlrsqettlrnRPDVVVCTpGRIIDH 249 555444444444777888888899999999998999999999***** PP AAA_22 83 lrrrrv......glliiDEaqh.Lr.s.eelleel.rd 110 lr+ r ++l++DE+++ L+ +e +ee+ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 250 LRNSRSvtlddlDVLVLDEVDRlLDlGfQEEVEEIvKY 287 **********************5534255555555244 PP >> DsrH DsrH like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 0.0 0.0089 26 36 66 .. 398 429 .. 380 439 .. 0.68 2 ? 6.6 0.0 0.0019 5.7 8 61 .. 529 586 .. 524 596 .. 0.87 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.0089 STTHHHHHHTTSEE.EEEHHHHHHTT-GGGB- CS DsrH 36 nrflalleeakvkl.yaLkeDleARGlkeels 66 +r +all+ + +++ + + D+ ARGl+ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 398 QREQALLRFTRGECqVLIATDVVARGLDISAV 429 55555555544444044589*******44444 PP == domain 2 score: 6.6 bits; conditional E-value: 0.0019 HHHHHHHH--TT-EEEE-GGGGGGGBTTSTTHHHHHH....TTSEEE CS DsrH 8 aletclrlleegdsvLLieDgVyaalkgnrflallee....akvkly 50 + +t+lr +e +++L+ eD ++ ++++++ + ++ + ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 529 KTDTALREAERAENLLMHEDEIHSRPARTWYQTETQKqavkEASRMR 575 67899****************************99998888888999 PP EEHHHHHHTT- CS DsrH 51 aLkeDleARGl 61 a +e l ARG Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185023142 576 AKEESLAARGE 586 99999999996 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (709 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1336 (0.0900816); expected 296.6 (0.02) Passed bias filter: 259 (0.0174634); expected 296.6 (0.02) Passed Vit filter: 29 (0.00195536); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.35u 0.35s 00:00:00.70 Elapsed: 00:00:01.07 # Mc/sec: 1729.65 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185040496 [L=695] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-39 134.6 0.0 9e-19 68.0 0.0 2.7 2 Ribonuclease_3 Ribonuclease III domain 8.3e-27 93.6 2.6 2.4e-15 56.6 0.5 4.2 3 Ribonucleas_3_3 Ribonuclease-III-like Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.0 0.0 2.1e-21 1.5e-17 1 111 [. 280 416 .. 280 419 .. 0.76 2 ! 68.0 0.0 1.2e-22 9e-19 1 113 [. 538 657 .. 538 658 .. 0.75 Alignments for each domain: == domain 1 score: 64.0 bits; conditional E-value: 2.1e-21 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHH CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarl 47 erLef+GD +lk++ t ++++ +p heg+l+++r+k++sne l + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185040496 280 ERLEFFGDCILKYISTWAVYNIFPGKHEGHLTRARMKIISNEYLTMC 326 8********************************************** PP HHTTTCHCHHBHHHHHHSTT--T.......................S CS Ribonuclease_3 48 akklglpsylresefdppknwlp.......................l 71 a+ g+ +y+r++ k+ l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185040496 327 ARASGMVQYMRAHALSNGKQELRfcppgrcqsfrntksvwnlditkP 373 ***********644444444444888887777666666655555440 PP SSSS.SC............................TSHHHHHHHHHH CS Ribonuclease_3 72 nkdlangk............grqsisydlk.eqsiadkvladvvEAl 105 ++ + ++ +++ k +adv+EAl Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185040496 374 -------RdsvkeqskgdtdEFMLS---QHaPVDVKAKKIADVMEAL 410 .......144444444443422222...23366899*********** PP HHHHHH CS Ribonuclease_3 106 iGaiyl 111 +G+ y Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185040496 411 LGCFYE 416 ***995 PP == domain 2 score: 68.0 bits; conditional E-value: 1.2e-22 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHH CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarl 47 +rLefLGDa+l++a++ l++ p +++g+ls ++skl +n+nla + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185040496 538 QRLEFLGDAILDFAVVCVLYSSLPRASQGQLSSIKSKLLCNRNLALI 584 7********************************************** PP HHTTTCHCHHBHHHHHHSTT--T......SSSSS.SC.......... CS Ribonuclease_3 48 akklglpsylresefdppknwlp......lnkdlangk......grq 82 + +++l++ +++ ++ + ++ + k + + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185040496 585 GLDIDLYQSMTVMSSALIQQFGDmqewklR-------KadvvanE-N 623 ******998887666654333333444430.......23344321.2 PP ..............TSHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 83 sisydlk...eqsiadkvladvvEAliGaiylds 113 + ++l+ kvlad++EAl+Ga+++ds Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185040496 624 HEYEKLRdkfACMGGGKVLADAMEALVGAVFIDS 657 2212222344566789****************98 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.2 0.0 1.9e-10 1.4e-06 22 84 .. 279 345 .. 261 350 .. 0.84 2 ? 1.2 0.0 0.044 3.2e+02 96 117 .. 403 424 .. 386 431 .. 0.78 3 ! 56.6 0.5 3.2e-19 2.4e-15 2 113 .. 519 659 .. 518 676 .. 0.73 Alignments for each domain: == domain 1 score: 28.2 bits; conditional E-value: 1.9e-10 Ribonucleas_3_3 22 NerLefLGdavLelvvseyllek.akkdegeltkklaslvseeslae 67 erLef+Gd +L+ +++ ++++ + k eg lt+ +++++s+e l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185040496 279 SERLEFFGDCILKYISTWAVYNIfPGKHEGHLTRARMKIISNEYLTM 325 69************999999999456689****************** PP Ribonucleas_3_3 68 iakelgLgkvlrl...rkge 84 +a+ g+ +++r ++g+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185040496 326 CARASGMVQYMRAhalSNGK 345 ************96554444 PP == domain 2 score: 1.2 bits; conditional E-value: 0.044 Ribonucleas_3_3 96 ladaleAliGAiyldkGaeeak 117 +ad++eAl+G y +G + + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185040496 403 IADVMEALLGCFYEAGGENLTV 424 589**********999977655 PP == domain 3 score: 56.6 bits; conditional E-value: 3.2e-19 Ribonucleas_3_3 2 eelllqaltHkSyangrkgyNerLefLGdavLelvvseyllek.akk 47 +l++qaltH S + k +N+rLefLGda+L+++v+ +l+ + ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185040496 519 FSLMDQALTHCSVLH--KASNQRLEFLGDAILDFAVVCVLYSSlPRA 563 589**********96..79********************99995566 PP Ribonucleas_3_3 48 degeltkklaslvseeslaeiakelg...............Lgkvlr 79 ++g+l++ +++l+++++la i+ +++ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185040496 564 SQGQLSSIKSKLLCNRNLALIGLDIDlyqsmtvmssaliqqF----- 605 8999**********************5555555555555552..... PP Ribonucleas_3_3 80 l....................rkgeeetessgrek........vlad 98 +k + k vlad Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185040496 606 GdmqewklrkadvvanenheyEKLRD--------KfacmgggkVLAD 644 05555576666554433322233333........233445555**** PP Ribonucleas_3_3 99 aleAliGAiyldkGa 113 a+eAl+GA+++d+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185040496 645 AMEALVGAVFIDSQC 659 ***********9864 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (695 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 303 (0.0204302); expected 296.6 (0.02) Passed bias filter: 260 (0.0175308); expected 296.6 (0.02) Passed Vit filter: 19 (0.0012811); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.31u 0.36s 00:00:00.67 Elapsed: 00:00:01.15 # Mc/sec: 1563.95 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 [L=354] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.9e-42 142.6 1.2 1.4e-41 141.8 0.2 1.7 2 DEAD DEAD/DEAH box helicase 4.3e-28 96.9 0.8 2.2e-27 94.7 0.4 2.2 2 Helicase_C Helicase conserved C-terminal domain 6.6e-05 22.5 1.6 0.00015 21.4 0.4 2.0 2 AAA_19 Part of AAA domain 0.00063 19.6 0.0 0.0012 18.7 0.0 1.4 1 ResIII Type III restriction enzyme, res subunit 0.0011 17.4 0.4 0.49 8.7 0.1 2.1 2 DUF1253 Protein of unknown function (DUF1253) 0.0059 16.2 0.1 0.018 14.5 0.1 1.8 2 AAA_30 AAA domain ------ inclusion threshold ------ 0.017 14.2 0.0 0.11 11.6 0.0 2.1 2 tRNA-synt_1b tRNA synthetases class I (W and Y) 0.038 13.0 0.1 0.13 11.2 0.0 1.8 2 CMS1 U3-containing 90S pre-ribosomal complex subuni 0.048 13.3 0.0 0.08 12.5 0.0 1.4 1 Helicase_RecD Helicase Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 141.8 0.2 8.2e-45 1.4e-41 2 164 .. 6 167 .. 5 171 .. 0.94 2 ? -1.3 0.0 0.8 1.3e+03 70 102 .. 242 277 .. 204 293 .. 0.66 Alignments for each domain: == domain 1 score: 141.8 bits; conditional E-value: 8.2e-45 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqka 47 +iQ++a++ il+g+dv+++a+ G+GKT+ f+i ++q+l + ++ +a Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 6 AIQQRAVKPILTGRDVIAQAQSGTGKTATFAIGILQTLDVSiRECQA 52 69************************************9999999** PP EEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 48 livaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldn 94 l++aPtreLa+q+++ ++++++ +++++++++gg+a + ++ + l++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 53 LVLAPTRELAQQIVKVITSLGDFMSIKIHACVGGTAVR-EDIRTLQD 98 ************************************77.77778877 PP .-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHHHHSTTTHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 95 gvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqln 141 gv++vvgTpgr+ d+++++ l+l+++r++ lDEad++ls gf++q++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 99 GVHVVVGTPGRVYDMIQRRALRLENIRMFALDEADEMLSRGFKEQIY 145 8*****************999************************** PP HHHHHSHHCTTSEEEEEESS-T.H CS xxxxxxxxxxxxxxxxxxxxxx.x RF DEAD 142 qilqilcdgkrlqvivlSATlp.k 164 ++ + + ++++q+ ++SAT+p + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 146 DVFKYM--PESVQCTIFSATMPlE 167 *****9..555**********944 PP == domain 2 score: -1.3 bits; conditional E-value: 0.8 TSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 70 ypklrvlliiggvalardqlsvl....dngvdivvgT 102 ++ v ++g+++++ +++ + ++ ++++++T Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 242 SRDFTVSSMHGDMEQR-ERDMIMrefrSGSTRVLITT 277 3456788888888744.44433356766666777666 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.0 0.95 1.6e+03 13 38 .. 159 184 .. 151 187 .. 0.79 2 ! 94.7 0.4 1.3e-30 2.2e-27 3 78 .] 240 315 .. 238 315 .. 0.96 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 0.95 ESTTSTHHHHHHHHHHHHTTSSSEEE CS Helicase_C 13 lhgelpqnereeileqfnagkskvlv 38 + + +++ e +e+ ++f ++ ++lv Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 159 IFSATMPLEVLEVTRKFMRDPIRILV 184 4455788889999*****99999998 PP == domain 2 score: 94.7 bits; conditional E-value: 1.3e-30 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidl 49 ++ +++ v +hg+++q+er+ i+++f++g+++vl++t+ ++rGid+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 240 MQSRDFTVSSMHGDMEQRERDMIMREFRSGSTRVLITTDLLARGIDV 286 66788999*************************************** PP TTEEEEEESSSSSSHHHHHHHHTTSSTTT CS Helicase_C 50 pdvnvVinfdlprsvtsyiQriGRtgRag 78 ++v++Vin+dlp+++++yi+riGR gR+g Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 287 QQVSLVINYDLPTNRENYIHRIGRSGRFG 315 ***************************87 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.4 0.4 9.3e-08 0.00015 2 63 .. 11 71 .. 10 89 .. 0.80 2 ? -1.9 0.0 1.7 2.8e+03 6 20 .. 95 108 .. 87 109 .. 0.74 Alignments for each domain: == domain 1 score: 21.4 bits; conditional E-value: 9.3e-08 AAA_19 2 aveaalagnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvllva 49 av+ l+g+ +++ ++ GtGKT+t a +i + l+ + l++a Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 11 AVKPILTGRDVIA-QAQSGTGKTATFAIGILQTLDV--SIrECQALVLA 56 6664444899999.********************32..3336679**** PP AAA_19 50 ptgraakrlserl.l 63 pt++ a+++ +++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 57 PTRELAQQIVKVItS 71 *********888752 PP == domain 2 score: -1.9 bits; conditional E-value: 1.7 AAA_19 6 alagnpllvvtGgPG 20 +l+ +++ vv G PG Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 95 TLQ-DGVHVVVGTPG 108 455.89999999999 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.0 7.2e-07 0.0012 8 73 .. 8 71 .. 2 102 .. 0.74 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 7.2e-07 HHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S..... CS ResIII 8 QeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar..... 51 Q++a++ +l + ++ ++ GtGKT + a i++ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 8 QQRAVKPILT-------GRDVIAQAQSGTGKTATFAIGILQTLDvsire 49 5666666662.......367889999**********7666666678889 PP .-EEEEESSHHHHHHHHHHGGGG CS ResIII 52 .kflflvprkelleqaleefkkf 73 ++l+l+p++el +q + + + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 50 cQALVLAPTRELAQQIVKVI-TS 71 ***************99877.33 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.9 0.0 0.0011 1.7 29 60 .. 41 72 .. 18 80 .. 0.85 2 ! 8.7 0.1 0.0003 0.49 299 387 .. 219 305 .. 194 316 .. 0.86 Alignments for each domain: == domain 1 score: 6.9 bits; conditional E-value: 0.0011 DUF1253 29 elrdqgftrpkvLillpfrniakevvdllikl 60 + d + ++ L+l p+r+ a+++v+ +++l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 41 QTLDVSIRECQALVLAPTRELAQQIVKVITSL 72 567889999******************99986 PP == domain 2 score: 8.7 bits; conditional E-value: 0.0003 DUF1253 299 kekgvlifipsYfdyvrirnylkkekisFaaiseytsekkisrarkl 345 ++ + +i+ + + +++ +++++++ +++ ++++ + + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 219 TITQAIIYCNTRRKVDWLTEQMQSRDFTVSSMHGDMEQRERDMIMRE 265 56667777777777677889999999999****************** PP DUF1253 346 FkkgrkkiLLvteRlhfyrRykikgvkkvifyslPefpefYs 387 F +g++++L++t+ l r + +++v+ vi y lP+++e Y Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 266 FRSGSTRVLITTDLLA--RGIDVQQVSLVINYDLPTNRENYI 305 ************9776..89*****************99886 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.5 0.1 1.1e-05 0.018 4 65 .. 6 68 .. 4 144 .. 0.70 2 ? -1.9 0.0 1.2 1.9e+03 50 84 .. 224 258 .. 213 275 .. 0.79 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 1.1e-05 AAA_30 4 aeQkeaveavltsgdrvavvqGpAGtGKttvlka.lrealea..agkrv 49 a Q++av+ +lt +d ++ q+ GtGKt + + + ++l+ ++ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 6 AIQQRAVKPILTGRD--VIAQAQSGTGKTATFAIgILQTLDVsiRECQA 52 56*********9998..88999******987664344444442245899 PP AAA_30 50 iglAptgkaakvLeee 65 ++lApt + a+++ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 53 LVLAPTRELAQQIVKV 68 9999999999987654 PP == domain 2 score: -1.9 bits; conditional E-value: 1.2 AAA_30 50 iglAptgkaakvLeeelgiearTiasllerldkae 84 i++ t + ++ L+e+++ + T++s+ ++ +++e Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 224 IIYCNTRRKVDWLTEQMQSRDFTVSSMHGDMEQRE 258 66777888888899999999999998888887765 PP >> tRNA-synt_1b tRNA synthetases class I (W and Y) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.5 0.0 0.32 5.2e+02 216 252 .. 167 204 .. 154 216 .. 0.82 2 ? 11.6 0.0 6.5e-05 0.11 43 110 .. 247 316 .. 231 331 .. 0.79 Alignments for each domain: == domain 1 score: -0.5 bits; conditional E-value: 0.32 HHHHHHHHSHCSTTC.SHHHHHHHHHCHHHCHHHHHHH CS tRNA-synt_1b 216 svkkkiqkaitdsde.evrkllklktelsnelieilea 252 +v ++ +k+++d+ + v+k++ ++ +++ ++i i + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 167 EVLEVTRKFMRDPIRiLVKKDELTLEGIKQFFIAIERE 204 6778899********99999999999999977776554 PP == domain 2 score: 11.6 bits; conditional E-value: 6.5e-05 EEHHHHCTTTTT..SSHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEE CS tRNA-synt_1b 43 iaDltAligdps.kaeerklrkreeelenakaqlakgldpekaeivl 88 + +++ + + + ++ +r++r+ ++++ + +la+g+d +++++v+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 247 VSSMHGDMEQRErDMIMREFRSGSTRVLITTDLLARGIDVQQVSLVI 293 4455555555555666999999999999989**************** PP CHHHHTCH.HHHHHHHHHCTCHC CS tRNA-synt_1b 89 qsewlehl.elaellrdlgklgs 110 +++ + + +++ + + g++g+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 294 NYDLPTNReNYIHRIGRSGRFGR 316 ****9876588888888887766 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 8.1e-05 0.13 167 208 .. 90 130 .. 86 136 .. 0.86 2 ? -2.1 0.0 0.91 1.5e+03 31 71 .. 203 245 .. 200 255 .. 0.73 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 8.1e-05 CMS1 167 kesitylkksrigiavGtpgRiadLleeeslsvdeLkrivlD 208 +e+i +l+ + + vGtpgR+ d+++ +l +++++ lD Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 90 REDIRTLQD-GVHVVVGTPGRVYDMIQRRALRLENIRMFALD 130 677777775.58899********************9998888 PP == domain 2 score: -2.1 bits; conditional E-value: 0.91 CMS1 31 rkkeklketqDveag..lneavarmdpelLadylasklkrfek 71 r++ kl + D + +++a++ + + +d+l++++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 203 REEWKLETLCDLYTTltITQAIIYCNTRRKVDWLTEQMQSRDF 245 6667776677777665578999999999999999988876554 PP >> Helicase_RecD Helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.0 4.9e-05 0.08 3 50 .. 24 73 .. 22 134 .. 0.81 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 4.9e-05 Helicase_RecD 3 tAdRGRGKSaalGlalaalvaegk..snilvtapskenvktlfeflekg 49 +A+ G+GK+a+ ++ + + + + ++ lv ap++e ++++++ +++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 24 QAQSGTGKTATFAIGILQTLDVSIreCQALVLAPTRELAQQIVKVITSL 72 6999******9888777776655445****************9998765 PP Helicase_RecD 50 l 50 Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185025346 73 G 73 4 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (354 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 426 (0.0287236); expected 296.6 (0.02) Passed bias filter: 369 (0.0248803); expected 296.6 (0.02) Passed Vit filter: 36 (0.00242735); expected 14.8 (0.001) Passed Fwd filter: 9 (0.000606837); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 0.25u 0.41s 00:00:00.65 Elapsed: 00:00:01.54 # Mc/sec: 600.04 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038194 [L=811] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-37 126.1 0.0 5.8e-36 123.5 0.0 2.1 2 DEAD DEAD/DEAH box helicase 6.1e-24 83.6 0.4 2.6e-23 81.6 0.1 2.2 2 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.026 13.5 14.7 1.3 8.0 0.0 3.6 3 CMS1 U3-containing 90S pre-ribosomal complex subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 123.5 0.0 1.2e-39 5.8e-36 1 151 [. 150 318 .. 150 332 .. 0.87 2 ? -0.6 0.0 0.16 8e+02 152 162 .. 427 442 .. 396 445 .. 0.58 Alignments for each domain: == domain 1 score: 123.5 bits; conditional E-value: 1.2e-39 -HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT. CS xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF DEAD 1 tpiQaeaiplil.gggdvlvaaeTGsGKTlaflipviqilletkdq. 45 tpiQ+++iplil +g dv+++aeTGsGKTlaf +p++++ll++ d Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038194 150 TPIQTSSIPLILqDGCDVVGVAETGSGKTLAFGLPILHTLLHEWDVy 196 89**********559*************************9975457 PP ......EEEEEESSHHHHHHHHHHHHHHTTT....SSCCEEEETTTS CS ......xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxx RF DEAD 46 ......kalivaPtreLaeqtlnnlkqfkky....pklrvlliiggv 82 ali+aPtreLa q+ + l++++ +++v+ +igg+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038194 197 gnthspFALILAPTRELAMQITTVLNDVTRRfsslRRVEVVNVIGGM 243 9*******************99999777777766899999999**** PP EHHHHHHHHH...TT.-SEEEEEHHHHHHHHHT...TSS.HCTTEEE CS xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxx RF DEAD 83 alardqlsvl...dngvdivvgTpgrlddlvst...gkl.nlsqvrl 122 ++ +q+++l + ++i+vgTpgrl dl++ +l +ls +r+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038194 244 SEH-KQRRQLsssGKPIHIIVGTPGRLCDLLNDssvPSLqDLSLLRY 289 *55.777777787777*****************66655546666*** PP EEEETHHHHHSTTTHHHHHHHHHHSHHCT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 123 lVlDEadrllsqgfsdqlnqilqilcdgk 151 lV+DEadr+ + g ++l++i +++++ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038194 290 LVIDEADRMVEDGHFPELYKIFSRIREHE 318 **********************9997764 PP == domain 2 score: -0.6 bits; conditional E-value: 0.16 T.....SEEEEEESS- CS x.....xxxxxxxxxx RF DEAD 152 r.....lqvivlSATl 162 +q++++SAT+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038194 427 AyvhcgRQTLLFSATA 442 13334499*******6 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.3 0.0 0.4 2e+03 51 69 .. 116 134 .. 115 136 .. 0.87 2 ! 81.6 0.1 5.3e-27 2.6e-23 2 78 .] 593 669 .. 592 669 .. 0.98 Alignments for each domain: == domain 1 score: -1.3 bits; conditional E-value: 0.4 TEEEEEESSSSSSHHHHHH CS Helicase_C 51 dvnvVinfdlprsvtsyiQ 69 +v+vV n++ p++ + ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038194 116 SVEVVSNTNSPWNSSVVLH 134 799**********998877 PP == domain 2 score: 81.6 bits; conditional E-value: 5.3e-27 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSST CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGid 48 ll++ +i++ +h++l+q++r + le fn++ lvat+va+rG+d Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038194 593 LLRALQINCRTIHSQLQQKQRIKALEGFNSSPIGALVATDVAARGLD 639 588999***************************************** PP STTEEEEEESSSSSSHHHHHHHHTTSSTTT CS Helicase_C 49 lpdvnvVinfdlprsvtsyiQriGRtgRag 78 lp v++V ++d+ rs++ yi+r+GRt+Rag Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038194 640 LPRVQYVLHYDIARSPQVYIHRSGRTARAG 669 ****************************97 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.2 3.7 0.00046 2.3 9 45 .. 75 111 .. 67 146 .. 0.56 2 ? 8.0 0.0 0.00026 1.3 178 209 .. 259 294 .. 251 299 .. 0.76 3 ? 2.2 0.6 0.015 74 1 36 [. 499 534 .. 499 550 .. 0.79 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.00046 CMS1 9 kaendekgkkeksekkRskkkerkkeklketqDveag 45 ++en+++gkk+k+++k +kk++r+k+k +t+ e Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038194 75 DNENKKEGKKKKKDNKEKKKDKRNKQKSGDTKPTEKD 111 4567777777777776666666666665554433322 PP == domain 2 score: 8.0 bits; conditional E-value: 0.00026 CMS1 178 igiavGtpgRiadLleeesl....svdeLkrivlDa 209 i i vGtpgR+ dLl++ s+ ++ L+++v+D Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038194 259 IHIIVGTPGRLCDLLNDSSVpslqDLSLLRYLVIDE 294 6789***********887763222355677888885 PP == domain 3 score: 2.2 bits; conditional E-value: 0.015 CMS1 1 tttkerkrkaendekgkkeksekkRskkkerkkekl 36 tt+k+ ++ +++ ++ +k++kkR++ +e+++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185038194 499 TTSKKDPNTGDESRDAVSSKKDKKRKRTEEQDEKDC 534 677777888888888888888889999999998876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (811 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1493 (0.100668); expected 296.6 (0.02) Passed bias filter: 455 (0.030679); expected 296.6 (0.02) Passed Vit filter: 46 (0.00310161); expected 14.8 (0.001) Passed Fwd filter: 9 (0.000606837); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.41u 0.49s 00:00:00.89 Elapsed: 00:00:01.99 # Mc/sec: 1063.81 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 [L=459] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.6e-47 159.6 0.1 1.1e-46 158.4 0.0 1.6 2 DEAD DEAD/DEAH box helicase 5.1e-26 90.3 0.0 1.2e-25 89.1 0.0 1.7 1 Helicase_C Helicase conserved C-terminal domain 0.00056 19.7 0.0 0.0023 17.8 0.0 2.0 1 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.036 13.7 0.0 0.084 12.5 0.0 1.6 1 AcylCoA_DH_N Acyl-CoA dehydrogenase N terminal 0.063 11.6 0.0 0.13 10.6 0.0 1.5 1 DUF1253 Protein of unknown function (DUF1253) 0.09 12.5 0.0 0.21 11.3 0.0 1.8 1 Flavi_DEAD Flavivirus DEAD domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 158.4 0.0 4.3e-50 1.1e-46 1 169 [] 42 209 .. 42 209 .. 0.96 2 ? -2.8 0.0 1.4 3.6e+03 71 83 .. 280 292 .. 249 315 .. 0.51 Alignments for each domain: == domain 1 score: 158.4 bits; conditional E-value: 4.3e-50 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqk 46 t+iQ+++ip++l+g+d+++ aeTGsGKT+af+ip++q+lle + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 42 TEIQQNSIPEALQGRDIIGLAETGSGKTGAFAIPILQALLERpTRLF 88 79***************************************98888* PP EEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 47 alivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvld 93 a+++aPtreLa q+ + ++ ++ +lr+++++gg ++ q+ l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 89 AVVLAPTRELAFQINEVFEALGAAISLRTVCVVGGIDMM-TQAIALA 134 *************************************88.8998998 PP T.-SEEEEEHHHHHHHHHTTSS.HCTTEEEEEEETHHHHHSTTTHHH CS xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 94 ngvdivvgTpgrlddlvstgkl.nlsqvrllVlDEadrllsqgfsdq 139 ++++i+v+Tpgrl+d+++++k +l ++++lV+DEadr+ls++f+ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 135 KQPHIIVATPGRLVDHLENTKGfSLRSLKYLVMDEADRMLSMDFEVE 181 89*****************99989999******************** PP HHHHHHHSHHCTTSEEEEEESS-THHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 140 lnqilqilcdgkrlqvivlSATlpkdvkkl 169 +n+il+ l + ++++ ++SAT++++v+kl Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 182 INKILEVL--PRDRKTYLFSATMTSKVAKL 209 *******9..55599*********999875 PP == domain 2 score: -2.8 bits; conditional E-value: 1.4 SSCCEEEETTTSE CS xxxxxxxxxxxxx RF DEAD 71 pklrvlliiggva 83 +++++++++g+++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 280 LGFSAVCLHGQMS 292 3445555555555 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 89.1 0.0 4.8e-29 1.2e-25 2 78 .] 276 352 .. 275 352 .. 0.98 Alignments for each domain: == domain 1 score: 89.1 bits; conditional E-value: 4.8e-29 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSST CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGid 48 ll+ g+++++lhg+++q +r+ l++f++g++++lvat+va+rG+d Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 276 LLRSLGFSAVCLHGQMSQPKRLGALNKFKSGSRNILVATDVASRGLD 322 7999******************************************* PP STTEEEEEESSSSSSHHHHHHHHTTSSTTT CS Helicase_C 49 lpdvnvVinfdlprsvtsyiQriGRtgRag 78 +p+v++V nfd+p +y++r+GRt+Rag Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 323 IPNVDMVLNFDIPSHGKDYVHRVGRTARAG 352 ****************************97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 0.0 9.2e-07 0.0023 32 182 .. 62 202 .. 40 204 .. 0.74 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 9.2e-07 ESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGG CS ResIII 32 maTGtGKTlvaasliarlar......kflflvprkelleqaleefkk 72 ++TG+GKT a i++ + +++l+p++el q e f+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 62 AETGSGKTGAFAIPILQALLerptrlFAVVLAPTRELAFQINEVFEA 108 58*******99975555444488889999****************22 PP GTGG...GEEEESSS-B---SEEEEEHHHHH................ CS ResIII 73 feskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiiltti 119 + i++ + + + ++ + +k+ ii++t Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 109 L-GAAISL----------RTVCVVGGIDMMTQAIALAKQPHIIVATP 144 2.222333..........33333344444444445567889****** PP ..................HTHHHHTTT-SEEEEETGGGTTSTT.THH CS ResIII 120 qklhkaleeeeendeskseslealldefdviiiDEaHrlsakkkyre 166 +l le+ ++ ++l +++++DEa r+ +++ e Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 145 GRLVDHLEN----------TKGFSLRSLKYLVMDEADRMLSMDFEVE 181 ****99985..........6889999999************999555 PP HHH.....---SEEEEEESS- CS ResIII 167 ile.....fkkafllglTATp 182 i++ ++ + ++AT Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 182 INKilevlPRDRKTYLFSATM 202 555555996677778899986 PP >> AcylCoA_DH_N Acyl-CoA dehydrogenase N terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.5 0.0 3.4e-05 0.084 4 20 .. 92 108 .. 89 108 .. 0.90 Alignments for each domain: == domain 1 score: 12.5 bits; conditional E-value: 3.4e-05 AcylCoA_DH_N 4 kAPlRDmrFvLyEvlda 20 +AP R++ F+++Ev++a Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 92 LAPTRELAFQINEVFEA 108 8**************86 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.0 5.4e-05 0.13 287 427 .. 248 379 .. 193 383 .. 0.77 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 5.4e-05 DUF1253 287 tknvlpkltkeskekgvlifipsYfdyvrirnylkkekisFaaisey 333 vl++++ + ++if+++ + +r++ +l++ +s + ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 248 LAYVLDEFK----GQSTIIFVATCNNALRVTLLLRSLGFSAVCLHGQ 290 444555555....789*******************999999999999 PP DUF1253 334 tsekkisrarklFkkgrkkiLLvteRlhfyrRykikgvkkvifyslP 380 s+ k a + Fk+g+++iL+ t+ + r i +v v+ + +P Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 291 MSQPKRLGALNKFKSGSRNILVATDVAS--RGLDIPNVDMVLNFDIP 335 9999********************9775..88999999999999999 PP DUF1253 381 efpefYselikllakskkeeaeeaeasvivlyskydaleLerivGte 427 ++ + Y + a+ k +++ ++ y ++Le ++G++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 336 SHGKDYVHRVGRTARAGK---AGRSVAFVTQYDVEAYQRLETLIGQR 379 999988777754444443...56666667777777778888888875 PP >> Flavi_DEAD Flavivirus DEAD domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 8.6e-05 0.21 13 57 .. 64 110 .. 54 171 .. 0.83 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 8.6e-05 TTS-TTTTHHHHHHHHHHHT..T--EEEEESSHHHHHHHHHHTTTS- CS Flavi_DEAD 13 PGaGktrkvlpelvkeaier..rlrtlvLaPtrvvlaemeealkgle 57 G+Gkt + ++++ +er rl ++vLaPtr + ++e +++l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185036708 64 TGSGKTGAFAIPILQALLERptRLFAVVLAPTRELAFQINEVFEALG 110 69*******999***99997446779*******98776666655443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (459 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 491 (0.0331063); expected 296.6 (0.02) Passed bias filter: 331 (0.0223181); expected 296.6 (0.02) Passed Vit filter: 25 (0.00168566); expected 14.8 (0.001) Passed Fwd filter: 6 (0.000404558); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.26u 0.40s 00:00:00.66 Elapsed: 00:00:01.51 # Mc/sec: 793.47 // Query: Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 [L=401] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-41 141.6 1.0 2.6e-41 140.9 0.2 1.6 2 DEAD DEAD/DEAH box helicase 6.1e-28 96.5 0.8 2.7e-27 94.4 0.4 2.1 2 Helicase_C Helicase conserved C-terminal domain 7.1e-05 22.4 1.5 0.00015 21.4 0.5 2.0 1 AAA_19 Part of AAA domain 0.00063 19.6 0.0 0.0012 18.7 0.0 1.4 1 ResIII Type III restriction enzyme, res subunit 0.00075 18.0 0.3 0.61 8.4 0.1 2.1 2 DUF1253 Protein of unknown function (DUF1253) 0.0067 16.0 0.1 0.02 14.4 0.0 1.7 2 AAA_30 AAA domain ------ inclusion threshold ------ 0.024 13.7 0.0 0.13 11.3 0.0 2.1 2 tRNA-synt_1b tRNA synthetases class I (W and Y) 0.044 12.8 0.0 0.14 11.1 0.0 1.8 2 CMS1 U3-containing 90S pre-ribosomal complex subuni 0.052 13.1 0.0 0.088 12.4 0.0 1.4 1 Helicase_RecD Helicase Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 140.9 0.2 1.6e-44 2.6e-41 2 164 .. 53 214 .. 52 218 .. 0.94 2 ? -1.8 0.0 1.1 1.8e+03 70 102 .. 289 324 .. 254 339 .. 0.66 Alignments for each domain: == domain 1 score: 140.9 bits; conditional E-value: 1.6e-44 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqka 47 +iQ++a++ il+g+dv+++a+ G+GKT+ f+i ++q+l + ++ +a Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 53 AIQQRAVKPILTGRDVIAQAQSGTGKTATFAIGILQTLDVSlRECQA 99 69************************************9999999** PP EEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 48 livaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldn 94 l++aPtreLa+q+++ ++++++ +++++++++gg+a + ++ + l++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 100 LVLAPTRELAQQIVKVITSLGDFMSIKIHACVGGTAVR-EDIRTLQD 145 ************************************77.77778877 PP .-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHHHHSTTTHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 95 gvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqln 141 gv++vvgTpgr+ d+++++ l+l ++rl+ lDEad++ls gf++q++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 146 GVHVVVGTPGRVYDMIQRRALRLDNIRLFALDEADEMLSRGFKEQIY 192 8*****************999************************** PP HHHHHSHHCTTSEEEEEESS-T.H CS xxxxxxxxxxxxxxxxxxxxxx.x RF DEAD 142 qilqilcdgkrlqvivlSATlp.k 164 ++ + + ++++q+ ++SAT+p + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 193 DVFKFM--PESVQCTIFSATMPlE 214 *****9..555**********944 PP == domain 2 score: -1.8 bits; conditional E-value: 1.1 TSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 70 ypklrvlliiggvalardqlsvl....dngvdivvgT 102 ++ v ++g+++++ +++ + ++ ++++++T Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 289 SRDFTVSSMHGDMEQR-ERDMIMrefrSGSTRVLITT 324 3456778888888744.44333356766667777766 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.2 0.0 1.1 1.8e+03 13 38 .. 206 231 .. 198 234 .. 0.79 2 ! 94.4 0.4 1.7e-30 2.7e-27 3 78 .] 287 362 .. 285 362 .. 0.96 Alignments for each domain: == domain 1 score: -1.2 bits; conditional E-value: 1.1 ESTTSTHHHHHHHHHHHHTTSSSEEE CS Helicase_C 13 lhgelpqnereeileqfnagkskvlv 38 + + +++ e +e+ ++f ++ ++lv Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 206 IFSATMPLEVLEVTRKFMRDPIRILV 231 4455788889999*****99999998 PP == domain 2 score: 94.4 bits; conditional E-value: 1.7e-30 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidl 49 ++ +++ v +hg+++q+er+ i+++f++g+++vl++t+ ++rGid+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 287 MQSRDFTVSSMHGDMEQRERDMIMREFRSGSTRVLITTDLLARGIDV 333 66788999*************************************** PP TTEEEEEESSSSSSHHHHHHHHTTSSTTT CS Helicase_C 50 pdvnvVinfdlprsvtsyiQriGRtgRag 78 ++v++Vin+dlp+++++yi+riGR gR+g Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 334 QQVSLVINYDLPTNRENYIHRIGRSGRFG 362 ***************************87 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.4 0.5 9.2e-08 0.00015 2 63 .. 58 118 .. 57 144 .. 0.79 Alignments for each domain: == domain 1 score: 21.4 bits; conditional E-value: 9.2e-08 AAA_19 2 aveaalagnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvll 47 av+ l+g+ +++ ++ GtGKT+t a +i + l+ + l+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 58 AVKPILTGRDVIA-QAQSGTGKTATFAIGILQTLD--VSLrECQALV 101 6664444899999.********************4..33336679** PP AAA_19 48 vaptgraakrlserl.l 63 +apt++ a+++ +++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 102 LAPTRELAQQIVKVItS 118 ***********888862 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.0 7.3e-07 0.0012 8 73 .. 55 118 .. 49 148 .. 0.73 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 7.3e-07 HHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S... CS ResIII 8 QeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar... 51 Q++a++ +l + ++ ++ GtGKT + a i++ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 55 QQRAVKPILT-------GRDVIAQAQSGTGKTATFAIGILQTLDvsl 94 5666666662.......367889999**********65555555666 PP ...-EEEEESSHHHHHHHHHHGGGG CS ResIII 52 ...kflflvprkelleqaleefkkf 73 ++l+l+p++el +q + + + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 95 recQALVLAPTRELAQQIVKVI-TS 118 77***************99877.33 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.6 0.0 0.00062 1 29 60 .. 88 119 .. 65 127 .. 0.85 2 ! 8.4 0.1 0.00037 0.61 299 387 .. 266 352 .. 243 363 .. 0.86 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.00062 DUF1253 29 elrdqgftrpkvLillpfrniakevvdllikl 60 + d ++ ++ L+l p+r+ a+++v+ +++l Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 88 QTLDVSLRECQALVLAPTRELAQQIVKVITSL 119 57899999*******************99986 PP == domain 2 score: 8.4 bits; conditional E-value: 0.00037 DUF1253 299 kekgvlifipsYfdyvrirnylkkekisFaaiseytsekkisrarkl 345 ++ + +i+ + + +++ +++++++ +++ ++++ + + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 266 TITQAIIYCNTRRKVDWLTEQMQSRDFTVSSMHGDMEQRERDMIMRE 312 56666777777766667889999999999****************** PP DUF1253 346 FkkgrkkiLLvteRlhfyrRykikgvkkvifyslPefpefYs 387 F +g++++L++t+ l r + +++v+ vi y lP+++e Y Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 313 FRSGSTRVLITTDLLA--RGIDVQQVSLVINYDLPTNRENYI 352 ************9776..89*****************99886 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.4 0.0 1.2e-05 0.02 4 65 .. 53 115 .. 51 191 .. 0.66 2 ? -2.2 0.0 1.6 2.6e+03 50 84 .. 271 305 .. 262 321 .. 0.79 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.2e-05 AAA_30 4 aeQkeaveavltsgdrvavvqGpAGtGKttvlka.lrealea..agk 47 a Q++av+ +lt +d ++ q+ GtGKt + + + ++l+ ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 53 AIQQRAVKPILTGRD--VIAQAQSGTGKTATFAIgILQTLDVslREC 97 56*********9998..88999*******986644444444423468 PP AAA_30 48 rviglAptgkaakvLeee 65 + ++lApt + a+++ + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 98 QALVLAPTRELAQQIVKV 115 999999999999987655 PP == domain 2 score: -2.2 bits; conditional E-value: 1.6 AAA_30 50 iglAptgkaakvLeeelgiearTiasllerldkae 84 i++ t + ++ L+e+++ + T++s+ ++ +++e Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 271 IIYCNTRRKVDWLTEQMQSRDFTVSSMHGDMEQRE 305 56677888888899998888889988888877755 PP >> tRNA-synt_1b tRNA synthetases class I (W and Y) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.9 0.0 0.4 6.7e+02 216 252 .. 214 251 .. 203 262 .. 0.82 2 ? 11.3 0.0 8e-05 0.13 43 110 .. 294 363 .. 278 378 .. 0.79 Alignments for each domain: == domain 1 score: -0.9 bits; conditional E-value: 0.4 HHHHHHHHSHCSTTC.SHHHHHHHHHCHHHCHHHHHHH CS tRNA-synt_1b 216 svkkkiqkaitdsde.evrkllklktelsnelieilea 252 +v ++ +k+++d+ + v+k++ ++ +++ ++i i + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 214 EVLEVTRKFMRDPIRiLVKKDELTLEGIKQFFIAIERE 251 6778899********99999999999999977766554 PP == domain 2 score: 11.3 bits; conditional E-value: 8e-05 EEHHHHCTTTTT..SSHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEE CS tRNA-synt_1b 43 iaDltAligdps.kaeerklrkreeelenakaqlakgldpekaeivl 88 + +++ + + + ++ +r++r+ ++++ + +la+g+d +++++v+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 294 VSSMHGDMEQRErDMIMREFRSGSTRVLITTDLLARGIDVQQVSLVI 340 4455555555555666999999999999989**************** PP CHHHHTCH.HHHHHHHHHCTCHC CS tRNA-synt_1b 89 qsewlehl.elaellrdlgklgs 110 +++ + + +++ + + g++g+ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 341 NYDLPTNReNYIHRIGRSGRFGR 363 ****9876488888888887766 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 8.6e-05 0.14 167 208 .. 137 177 .. 133 183 .. 0.86 2 ? -2.5 0.0 1.3 2.1e+03 31 70 .. 250 291 .. 248 300 .. 0.72 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 8.6e-05 CMS1 167 kesitylkksrigiavGtpgRiadLleeeslsvdeLkrivlD 208 +e+i +l+ + + vGtpgR+ d+++ +l +d+++ lD Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 137 REDIRTLQD-GVHVVVGTPGRVYDMIQRRALRLDNIRLFALD 177 677777775.58899********************9988877 PP == domain 2 score: -2.5 bits; conditional E-value: 1.3 CMS1 31 rkkeklketqDveag..lneavarmdpelLadylasklkrfe 70 r++ kl + D + +++a++ + + +d+l++++++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 250 REEWKLETLCDLYTTltITQAIIYCNTRRKVDWLTEQMQSRD 291 566677666677666457899999999999999998887655 PP >> Helicase_RecD Helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 5.3e-05 0.088 3 50 .. 71 120 .. 69 180 .. 0.80 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 5.3e-05 Helicase_RecD 3 tAdRGRGKSaalGlalaalvaegk..snilvtapskenvktlfefle 47 +A+ G+GK+a+ ++ + + + + ++ lv ap++e ++++++ ++ Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 71 QAQSGTGKTATFAIGILQTLDVSLreCQALVLAPTRELAQQIVKVIT 117 6999******8777776665544334****************99987 PP Helicase_RecD 48 kgl 50 + Paraphysomonas-bandaiensis-Caron-Lab-Isolate_CAMPEP_0185017320 118 SLG 120 654 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (401 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 495 (0.033376); expected 296.6 (0.02) Passed bias filter: 431 (0.0290608); expected 296.6 (0.02) Passed Vit filter: 39 (0.00262963); expected 14.8 (0.001) Passed Fwd filter: 9 (0.000606837); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 0.24u 0.47s 00:00:00.71 Elapsed: 00:00:01.60 # Mc/sec: 654.21 // Query: Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 [L=784] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-44 150.6 0.0 1.4e-43 148.3 0.0 1.9 2 DEAD DEAD/DEAH box helicase 3e-26 91.0 0.0 1.3e-25 89.0 0.0 2.1 3 Helicase_C Helicase conserved C-terminal domain 4.7e-17 61.3 0.0 8.9e-17 60.5 0.0 1.5 1 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP 1e-13 50.9 0.0 2.6e-13 49.7 0.0 1.7 1 RRM_6 RNA recognition motif (a.k.a. RRM, RBD, or RNP ------ inclusion threshold ------ 0.016 15.0 0.1 0.065 13.0 0.0 2.0 2 ResIII Type III restriction enzyme, res subunit 0.042 13.6 0.0 0.078 12.8 0.0 1.5 1 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 148.3 0.0 5.7e-47 1.4e-43 1 167 [. 310 494 .. 310 496 .. 0.93 2 ? -0.3 0.0 0.25 6.3e+02 72 103 .. 569 603 .. 558 657 .. 0.76 Alignments for each domain: == domain 1 score: 148.3 bits; conditional E-value: 5.7e-47 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT.............. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............. RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq.............. 45 tp+Q+ a+p + g+d++++a+TGsGKT+ f+ pv+++ll+ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 310 TPVQKYALPVGMAGRDMMACAQTGSGKTGGFIFPVLSALLRD--Gaapvdereagrgrr 366 79*************************************995..3357*********** PP .....EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEE CS .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 .....kalivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdiv 99 al++aPtreL+ q+++++++f+ +++r+++++gg +++ ql+ l++g+d++ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 367 ararpNALVLAPTRELVSQIFDEARKFCYCTGVRAVVCYGGAETR-GQLQELERGCDLL 424 ****************************99************955.9*****999**** PP EEEHHHHHHHHHTTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTT...SEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx RF DEAD 100 vgTpgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkr...lqv 155 v+Tpgrl+d +++g+ +l +++lVlDEadr+l++gf++q+++i+++ d r +q+ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 425 VATPGRLVDFLERGRVTLGACKFLVLDEADRMLDMGFEPQIRRIVEQE-DMPRtgvRQT 482 *************999*999***************************5.444447799* PP EEEESS-THHHH CS xxxxxxxxxxxx RF DEAD 156 ivlSATlpkdvk 167 ++SAT+p++++ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 483 FMFSATFPREMQ 494 ********8876 PP == domain 2 score: -0.3 bits; conditional E-value: 0.25 SCCEEEETTTSEHHHHHHHHH....TT.-SEEEEEH CS xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx RF DEAD 72 klrvlliiggvalardqlsvl....dngvdivvgTp 103 ++ + i+g+++++ d++ l ++++ i+vgT Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 569 GFPASSIHGDKTQR-DRELALkdfkSGRTPILVGTD 603 56677889999855.7777778999999******96 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.0 2.9 7.2e+03 14 24 .. 237 247 .. 236 269 .. 0.63 2 ? -3.2 0.0 3.1 7.6e+03 7 28 .. 398 419 .. 393 421 .. 0.79 3 ! 89.0 0.0 5.4e-29 1.3e-25 3 78 .] 565 640 .. 563 640 .. 0.97 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 2.9 STTSTHHHHHH CS Helicase_C 14 hgelpqneree 24 hg++ ++er+e Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 237 HGDMRPSERLE 247 67777777765 PP == domain 2 score: -3.2 bits; conditional E-value: 3.1 TS-EEEESTTSTHHHHHHHHHH CS Helicase_C 7 gikvailhgelpqnereeileq 28 g+++++++g+ +++ +++ le+ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 398 GVRAVVCYGGAETRGQLQELER 419 7888999998888888887775 PP == domain 3 score: 89.0 bits; conditional E-value: 5.4e-29 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlp 61 l ++g+++ +hg+ +q++re l++f++g++++lv t+va+rG+d+p+v +V+nfdlp Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 565 LCREGFPASSIHGDKTQRDRELALKDFKSGRTPILVGTDVAARGLDIPNVLHVVNFDLP 623 56789****************************************************** PP SSHHHHHHHHTTSSTTT CS Helicase_C 62 rsvtsyiQriGRtgRag 78 r ++y++riGRtgRag Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 624 RQISDYVHRIGRTGRAG 640 ***************97 PP >> RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.5 0.0 3.6e-20 8.9e-17 1 69 [. 117 186 .. 117 187 .. 0.98 Alignments for each domain: == domain 1 score: 60.5 bits; conditional E-value: 3.6e-20 EEEESETTTSSHHHHHHHHHTCSCEEEEEEEEE.TTSSEEEEEEEEESSHHHHHHHHHH CS RRM_1 1 lfVgnLppdvteeeLkelFskfGpiesiklvrd.etgrskgfafVeFeseedaekAlea 58 l+Vgn+p+++te++ + +F + G i+++ ++ d tgrs+gf+ +F+++ ae+++++ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 117 LYVGNIPYNMTEQQFRAHFAEMGAITDCHVKMDqATGRSRGFGVLDFADPNVAERCIKE 175 8********************************************************** PP HTTEEETTEEE CS RRM_1 59 lngkklggrel 69 + + l+gr+l Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 176 WHDRPLEGRPL 186 ********987 PP >> RRM_6 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.7 0.0 1e-16 2.6e-13 1 69 [. 117 186 .. 117 186 .. 0.95 Alignments for each domain: == domain 1 score: 49.7 bits; conditional E-value: 1e-16 EEE-S--TT--HHHHHHHHHTTS--GGEEEEE-TT.S-EEEEEEE--SSHHHHHHHHTT CS RRM_6 1 lyvrnlppsvteedlreffepygkvegvriprnkd.grgrgfAfVefespeeAqkalkk 58 lyv+n+p +te++ r++f++ g++++++++ ++ gr+rgf+ ++f++p+ A++++k Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 117 LYVGNIPYNMTEQQFRAHFAEMGAITDCHVKMDQAtGRSRGFGVLDFADPNVAERCIKE 175 79********************************************************* PP .TT.EESSS-EE CS RRM_6 59 .lnglvlkgrtl 69 ++ l gr+l Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 176 wHD-RPLEGRPL 186 555.99999875 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.2 1.3 2.5 6.1e+03 105 111 .. 44 50 .. 7 84 .. 0.46 2 ? 13.0 0.0 2.6e-05 0.065 32 163 .. 330 461 .. 321 491 .. 0.62 Alignments for each domain: == domain 1 score: -3.2 bits; conditional E-value: 2.5 ....... CS ResIII 105 eekkkkd 111 ++kkkk+ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 44 RKKKKKS 50 1111111 PP == domain 2 score: 13.0 bits; conditional E-value: 2.6e-05 ESTTSTHHHHHH.HHHHHH-S.....................-EEEEESSHHHHHHHHH CS ResIII 32 maTGtGKTlvaa.sliarlar.....................kflflvprkelleqale 68 + TG+GKT + ++++l+r ++l+l+p++el++q + Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 330 AQTGSGKTGGFIfPVLSALLRdgaapvdereagrgrrararpNALVLAPTRELVSQIFD 388 68******866633666677777788888888899999999*****************9 PP HGGGGTGG...GEEEESSS-B---SEEEEEHHHHH........................ CS ResIII 69 efkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkale 127 e k++ ++ +v++ +++ + ++++ ++++++t +l le Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 389 EA----RKFCYCTGVRAVVCYGGAETRGQLQELE-------RGCDLLVATPGRLVDFLE 436 99....5566665666656665533222222222.......256666666666666655 PP ..........HTHHHHTTT-SEEEEETGGGTTSTT. CS ResIII 128 eeeendeskseslealldefdviiiDEaHrlsakkk 163 + + l++ ++++ DEa r+ ++ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 437 R-----------GRVTLGACKFLVLDEADRMLDMGF 461 4...........234455555666666666655555 PP >> RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 3.2e-05 0.078 2 55 .. 132 190 .. 131 191 .. 0.89 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 3.2e-05 RRM_5 2 yklfskfGkveriki.frkk....ggqAfvefdtveaArkakeylngvklggktLkvey 55 +++f+ G ++++++ +++ +g++ f++++ A+++++ + ++l g++L v y Pelagococcus-subviridis-CCMP1429_CAMPEP_0190543068 132 RAHFAEMGAITDCHVkMDQAtgrsRGFGVLDFADPNVAERCIKEWHDRPLEGRPLVVRY 190 6789999999887775777799989******************************9998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (784 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1187 (0.0800351); expected 296.6 (0.02) Passed bias filter: 515 (0.0347246); expected 296.6 (0.02) Passed Vit filter: 158 (0.0106534); expected 14.8 (0.001) Passed Fwd filter: 31 (0.00209022); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.58u 0.53s 00:00:01.10 Elapsed: 00:00:01.88 # Mc/sec: 1088.56 // Query: Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 [L=419] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-42 144.0 0.2 5.8e-42 143.0 0.1 1.5 2 DEAD DEAD/DEAH box helicase 3.8e-28 97.1 0.7 1.9e-27 94.9 0.3 2.1 2 Helicase_C Helicase conserved C-terminal domain 0.00025 19.5 0.0 0.18 10.1 0.0 2.1 2 DUF1253 Protein of unknown function (DUF1253) 0.00028 20.5 0.6 0.0013 18.4 0.0 2.2 2 AAA_19 Part of AAA domain 0.0074 16.1 0.0 0.014 15.1 0.0 1.4 1 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.061 12.9 0.1 0.1 12.1 0.1 1.4 1 AAA_30 AAA domain 0.061 12.4 0.0 0.13 11.3 0.0 1.5 1 tRNA-synt_1b tRNA synthetases class I (W and Y) 0.096 12.3 0.1 0.17 11.4 0.0 1.4 1 Helicase_RecD Helicase Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 143.0 0.1 3.1e-45 5.8e-42 2 164 .. 69 230 .. 68 234 .. 0.95 2 ? -3.3 0.0 2.8 5.2e+03 71 102 .. 306 340 .. 285 347 .. 0.63 Alignments for each domain: == domain 1 score: 143.0 bits; conditional E-value: 3.1e-45 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeq 59 +iQ++ai+ +l g+dv+++a+ G+GKT+ f+i ++q++ ++ + +al++aPtreLa+q Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 69 AIQQRAIKPMLMGRDVIAQAQSGTGKTATFSIGILQQVDNGlAECQALVLAPTRELAQQ 127 69***************************************9999************** PP HHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 60 tlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnls 118 +++ + +++ +++r+++++gg+a + d+ + l+ngv++vvgTpgr+ d+++++ l+l Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 128 IVKVMIALGDFMSVRIHACVGGTAVR-DDIRTLQNGVHVVVGTPGRVYDMINRRALRLA 185 ************************77.9999**********************999*** PP TEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-T.H CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF DEAD 119 qvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlp.k 164 + +++ lDEad++ls gf+dq++++ + l +++++v ++SAT+p + Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 186 DTKIFALDEADEMLSRGFKDQIYDVFKFL--PEQVRVALFSATMPlE 230 ****************************9..556**********944 PP == domain 2 score: -3.3 bits; conditional E-value: 2.8 SSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 71 pklrvlliiggvalardqlsvl....dngvdivvgT 102 +++ v +++g+++++ +++ + ++ +++++T Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 306 KDFTVSAMHGDMDQK-ERDIIMrefrSGSSRVLITT 340 455677777777744.22222245655556666665 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.3 0.0 0.51 9.5e+02 10 38 .. 220 247 .. 212 251 .. 0.78 2 ! 94.9 0.3 1e-30 1.9e-27 4 78 .] 304 378 .. 301 378 .. 0.97 Alignments for each domain: == domain 1 score: -0.3 bits; conditional E-value: 0.51 EEEESTTSTHHHHHHHHHHHHTTSSSEEE CS Helicase_C 10 vailhgelpqnereeileqfnagkskvlv 38 va + + +++ e +ei ++f + ++lv Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 220 VALFSA-TMPLEVLEITSRFMQEPIRILV 247 555555.7778899********9999998 PP == domain 2 score: 94.9 bits; conditional E-value: 1e-30 HHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSS CS Helicase_C 4 ekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlpr 62 ++k++ v ++hg++ q+er+ i+++f++g+s+vl++t+ ++rGid+++v++Vin+dlp+ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 304 TQKDFTVSAMHGDMDQKERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 362 68999****************************************************** PP SHHHHHHHHTTSSTTT CS Helicase_C 63 svtsyiQriGRtgRag 78 ++++yi+riGR gR+g Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 363 NRENYIHRIGRSGRFG 378 **************87 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.1 0.0 9.6e-05 0.18 29 60 .. 104 135 .. 82 142 .. 0.85 2 ! 7.2 0.0 0.00073 1.3 304 387 .. 287 368 .. 271 378 .. 0.83 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 9.6e-05 DUF1253 29 elrdqgftrpkvLillpfrniakevvdllikl 60 + d+g++ ++ L+l p+r+ a+++v+ +i l Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 104 QQVDNGLAECQALVLAPTRELAQQIVKVMIAL 135 5689***********************99976 PP == domain 2 score: 7.2 bits; conditional E-value: 0.00073 DUF1253 304 lifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkgrkkiLLvteRlhf 362 +i+ + + +++ +++++++ a++ ++k+ + + F +g+ ++L++t+ l Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 287 IIYCNTRRKVDWLTDGMTQKDFTVSAMHGDMDQKERDIIMREFRSGSSRVLITTDLLA- 344 5555555555556777889999999999999***********************9776. PP DUF1253 363 yrRykikgvkkvifyslPefpefYs 387 r + +++v+ vi y lP+++e Y Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 345 -RGIDVQQVSLVINYDLPTNRENYI 368 .89*****************99886 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 0.0 7.2e-07 0.0013 8 66 .. 79 137 .. 72 148 .. 0.77 2 ? -0.6 0.0 0.58 1.1e+03 7 20 .. 156 171 .. 150 172 .. 0.75 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 7.2e-07 AAA_19 8 a.gnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraakrlserl.l 63 g+ +++ ++ GtGKT+t +i + +++ + l++apt++ a+++ +++ + Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 79 LmGRDVIA-QAQSGTGKTATFSIGILQQVDN--GLaECQALVLAPTRELAQQIVKVMiA 134 34899999.********************55..555666**************999874 PP AAA_19 64 lgv 66 lg Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 135 LGD 137 443 PP == domain 2 score: -0.6 bits; conditional E-value: 0.58 AAA_19 7 la..gnpllvvtGgPG 20 ++ +n++ vv G PG Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 156 IRtlQNGVHVVVGTPG 171 444459**999****9 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.0 7.8e-06 0.014 26 69 .. 82 131 .. 65 161 .. 0.76 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 7.8e-06 SEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHH CS ResIII 26 krglivmaTGtGKTlvaasliarlar......kflflvprkelleqalee 69 + ++ ++ GtGKT + i++ ++l+l+p++el +q + Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 82 RDVIAQAQSGTGKTATFSIGILQQVDnglaecQALVLAPTRELAQQIVKV 131 557789999*******995344444456666***************9765 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.1 5.4e-05 0.1 4 63 .. 69 129 .. 67 204 .. 0.79 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 5.4e-05 AAA_30 4 aeQkeaveavltsgdrvavvqGpAGtGKttvlka.lrealea..agkrviglAptgkaa 59 a Q++a++ +l+ +d ++ q+ GtGKt + + + + +++ a+ + ++lApt + a Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 69 AIQQRAIKPMLMGRD--VIAQAQSGTGKTATFSIgILQQVDNglAECQALVLAPTRELA 125 5699******99998..88999*******986654444444434467999999999999 PP AAA_30 60 kvLe 63 +++ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 126 QQIV 129 9865 PP >> tRNA-synt_1b tRNA synthetases class I (W and Y) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 7e-05 0.13 46 113 .. 313 382 .. 300 401 .. 0.77 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 7e-05 HHHCTTTTT..SSHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEECHHHHTCH.HHHHHH CS tRNA-synt_1b 46 ltAligdps.kaeerklrkreeelenakaqlakgldpekaeivlqsewlehl.elaell 102 +++ +++++ + +r++r+ + ++ + +la+g+d +++++v++++ + + +++ + Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 313 MHGDMDQKErDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNReNYIHRI 371 34444444444557777777777777799*******************98765899999 PP HHHCTCHCHHH CS tRNA-synt_1b 103 rdlgklgslnr 113 + g++g+ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 372 GRSGRFGRKGV 382 88888887655 PP >> Helicase_RecD Helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 9.4e-05 0.17 3 48 .. 87 134 .. 85 195 .. 0.87 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 9.4e-05 Helicase_RecD 3 tAdRGRGKSaalGlalaalvaegk..snilvtapskenvktlfeflek 48 +A+ G+GK+a+ + + + v +g ++ lv ap++e ++++++ +++ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190565316 87 QAQSGTGKTATFSIGILQQVDNGLaeCQALVLAPTRELAQQIVKVMIA 134 6999**********999999998878****************998865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (419 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 534 (0.0360057); expected 296.6 (0.02) Passed bias filter: 444 (0.0299373); expected 296.6 (0.02) Passed Vit filter: 49 (0.00330389); expected 14.8 (0.001) Passed Fwd filter: 8 (0.000539411); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.27u 0.45s 00:00:00.72 Elapsed: 00:00:01.24 # Mc/sec: 882.04 // Query: Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 [L=550] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-45 153.8 0.0 1.3e-44 151.6 0.0 1.9 2 DEAD DEAD/DEAH box helicase 8.6e-25 86.4 0.0 2.4e-24 84.9 0.0 1.8 2 Helicase_C Helicase conserved C-terminal domain 1.7e-05 23.7 0.0 2e-05 23.5 0.0 1.2 1 SNF2_N SNF2 family N-terminal domain ------ inclusion threshold ------ 0.052 13.3 0.0 0.64 9.8 0.0 2.5 2 ResIII Type III restriction enzyme, res subunit 0.15 10.6 0.0 0.22 10.0 0.0 1.2 1 Salt_tol_Pase Glucosylglycerol-phosphate phosphatase (Salt_t Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 151.6 0.0 4.5e-48 1.3e-44 2 169 .] 228 402 .. 227 402 .. 0.94 2 ? -0.6 0.0 0.26 7.6e+02 47 102 .. 454 508 .. 417 514 .. 0.75 Alignments for each domain: == domain 1 score: 151.6 bits; conditional E-value: 4.5e-48 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT..........EEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq..........kaliv 50 piQ++a+p++++g+dv++ a+TGsGKTlaf++p+++++ + q ali+ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 228 PIQKQALPALMSGRDVIGIAKTGSGKTLAFALPLLRHVSD---QppvkdgsegpVALIL 283 8*************************************65...445679********** PP ESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 51 aPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddl 109 aP reLa q++++ k+f+ ++lr+++++gg + a dq l++g ++vv+Tpgrl+d+ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 284 APARELALQIFRETKRFAGALGLRCCCVYGGAKVA-DQIAELKRGSEVVVATPGRLIDI 341 *********************************99.******999************** PP HHT..TSS.HCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THH CS xxx..xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 110 vst..gkl.nlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkd 165 + + g+l l +v+++V+DEadr+ ++gf++q+ +l+ ++ ++q+ ++SAT+p+ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 342 LTMqqGRLiGLTRVSFVVMDEADRMFDMGFEPQIAMVLRNVRP--DRQTALFSATFPRA 398 9997777778888*************************99844..59**********99 PP HHHH CS xxxx RF DEAD 166 vkkl 169 v++l Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 399 VEQL 402 9875 PP == domain 2 score: -0.6 bits; conditional E-value: 0.26 EEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxx RF DEAD 47 alivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvl....dngvdivvg 101 +l+ + t+ + ++++l + + l ++gg+++ d++s + + + i+v+ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 454 TLVFVDTQLKCDSIYEQLVKAGY----PSLSLHGGKEQT-DRDSTIadfkAGAATILVA 507 66666666777777777777664....478889999855.7777767888888999999 PP E CS x RF DEAD 102 T 102 T Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 508 T 508 8 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.0 2 6e+03 6 28 .. 304 326 .. 301 334 .. 0.76 2 ! 84.9 0.0 8e-28 2.4e-24 2 78 .] 470 546 .. 469 546 .. 0.97 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 2 TTS-EEEESTTSTHHHHHHHHHH CS Helicase_C 6 kgikvailhgelpqnereeileq 28 g+++++++g+ + ++ + l++ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 304 LGLRCCCVYGGAKVADQIAELKR 326 58899999998888888776665 PP == domain 2 score: 84.9 bits; conditional E-value: 8e-28 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSS CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl 60 +l k g++++ lhg+ +q +r+ ++ +f+ag +lvat+va+rG+d+p+v++V+n+++ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 470 QLVKAGYPSLSLHGGKEQTDRDSTIADFKAGAATILVATSVAGRGLDVPAVTCVVNYSC 528 57899****************************************************** PP SSSHHHHHHHHTTSSTTT CS Helicase_C 61 prsvtsyiQriGRtgRag 78 p ++y++r+GRtgRag Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 529 PNHLEDYVHRVGRTGRAG 546 ****************97 PP >> SNF2_N SNF2 family N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 0.0 6.8e-09 2e-05 32 146 .. 247 366 .. 85 394 .. 0.87 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 6.8e-09 --TTSSCCHH.HHHHHHHHCCCHS-........EEEE--T.TTHHHHHHHHHHCS.T.T CS xxxxxxxxxx.xxxxxxxxxxxxxxxxxxx...xxxxxxx.xxxxxxxxxxxxxxxxxx RF SNF2_N 32 DemGlGKTvq.vialilllkeeaerkkkks...tLivvPs.slldqWvneierhvspsa 85 +G GKT+ ++ l+++++++ + k ++ Li++P+ +l+ q +e +r++ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 247 AKTGSGKTLAfALPLLRHVSDQPPVKDGSEgpvALILAPArELALQIFRETKRFAGALG 305 56899***9845788889999999876666999*******9**************9999 PP --EEE--HCCCHHHTT-SSSTT-SEEEE-CCHHH..TSTCTCHHHHTSEEEEEEETTCC CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SNF2_N 86 lrvlvyggqkkakksaaklladydvvittydvlralrekkrksvlkkvkwkrvvlDEah 144 lr+++++g k + a+l + +vv+ t +l + ++ + + +++ +vv+DEa Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 306 LRCCCVYGGAKVADQIAELKRGSEVVVATPGRLIDILTMQQGRLIGLTRVSFVVMDEAD 364 988776666669999*******************9999999999999***********9 PP GG CS xx RF SNF2_N 145 rl 146 r+ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 365 RM 366 87 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.5 0.0 0.15 4.4e+02 105 139 .. 74 108 .. 55 147 .. 0.73 2 ? 9.8 0.0 0.00022 0.64 28 74 .. 243 301 .. 223 397 .. 0.74 Alignments for each domain: == domain 1 score: 0.5 bits; conditional E-value: 0.15 ..................................HT CS ResIII 105 eekkkkdkeiilttiqklhkaleeeeend.eskses 139 e ++++d + ltt q++ a e +++++ e + + Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 74 EDSSDDDDDANLTTRQRVALAKEDAKRAQqEAET-E 108 4566788899999999999997777666633332.2 PP == domain 2 score: 9.8 bits; conditional E-value: 0.00022 EEEEESTTSTHHHHHHHHHHHH-S............-EEEEESSHHHHHHHHHHGGGGT CS ResIII 28 glivmaTGtGKTlvaasliarlar............kflflvprkelleqaleefkkfe 74 ++ + TG+GKTl a ++r + +l+l+p +el q +e k+f+ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 243 VIGIAKTGSGKTLAFALPLLRHVSdqppvkdgsegpVALILAPARELALQIFRETKRFA 301 445678*******999777777779999999999*999************998875554 PP >> Salt_tol_Pase Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 0.0 7.4e-05 0.22 285 334 .. 413 460 .. 397 475 .. 0.81 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 7.4e-05 Salt_tol_Pase 285 lvGvGdtvtskkknkgkswlrGGsdrgfLtllqelGeefekenrvvlvds 334 +v G v+s + ++ ++ r G +f++llq lG +fe+ + +v+vd+ Pelagococcus-subviridis-CCMP1429_CAMPEP_0190558072 413 IVCGGKSVASDTVEQYVEI-R-GEHTKFMRLLQLLGYWFERGSTLVFVDT 460 5666778888777655433.4.67889*********************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (550 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 582 (0.0392421); expected 296.6 (0.02) Passed bias filter: 348 (0.0234644); expected 296.6 (0.02) Passed Vit filter: 43 (0.00289933); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.29u 0.42s 00:00:00.71 Elapsed: 00:00:01.27 # Mc/sec: 1130.46 // Query: Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196766864 [L=421] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-25 86.9 0.5 1.5e-23 82.4 0.1 2.5 2 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.04 13.8 0.0 0.13 12.1 0.0 1.9 1 Helicase_C_2 Helicase C-terminal domain Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.3 0.0 0.019 1.4e+02 13 51 .. 100 172 .. 88 196 .. 0.72 2 ! 82.4 0.1 2.1e-27 1.5e-23 3 78 .] 234 309 .. 232 309 .. 0.97 Alignments for each domain: == domain 1 score: 2.3 bits; conditional E-value: 0.019 ESTTSTHHHHHHHHHHHHTTSS..................................SEEEE CS Helicase_C 13 lhgelpqnereeileqfnagks..................................kvlva 39 + g +++er+ l + +a+++ v+ + Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196766864 100 IKGPFNPKERQTLLFSATASQKertnnnkkekrvrgigagavrslpihiqqllslvSVCSS 160 555555566666655555555556666666667777888888888888888889989999* PP SGGGTSSSTSTT CS Helicase_C 40 tnvaerGidlpd 51 t v++ ++d+ + Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196766864 161 TEVVDVSVDISN 172 *********966 PP == domain 2 score: 82.4 bits; conditional E-value: 2.1e-27 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprs 63 l++ ++++ +h++l+q++r + +e f++ +lvat+va+rG+d+p++++Vi++d+ rs Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196766864 234 LRALELNSRTIHAQLQQKQRMKAIEAFRSAPIGILVATDVAARGLDIPHIDTVIHYDIARS 294 788899999**************************************************** PP HHHHHHHHTTSSTTT CS Helicase_C 64 vtsyiQriGRtgRag 78 ++ y +r+GRt+Rag Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196766864 295 PQLYTHRSGRTARAG 309 *************97 PP >> Helicase_C_2 Helicase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 1.8e-05 0.13 1 78 [. 206 281 .. 206 289 .. 0.84 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 1.8e-05 Helicase_C_2 1 llellkvvpggvlvffpSyslleevverlkeeleskkievfee.keesrekvleeykeskg 60 ++++l ++g+vlvf++S + +++ l++ + ++ + + ++++r k +e ++++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196766864 206 IYQCLLNIQGRVLVFVNSIKSARRLDGLLRALEL-NSRTIHAQlQQKQRMKAIEAFRSAPI 265 5788999***********************8654.44555555579999************ PP Helicase_C_2 61 aillavcrgkvseGidfs 78 il+a+ G+d++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196766864 266 GILVATD--VAARGLDIP 281 ****998..777888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (421 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1307 (0.0881262); expected 296.6 (0.02) Passed bias filter: 442 (0.0298024); expected 296.6 (0.02) Passed Vit filter: 45 (0.00303419); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.25u 0.39s 00:00:00.64 Elapsed: 00:00:01.12 # Mc/sec: 981.21 // Query: Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 [L=407] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.5e-43 145.6 0.2 2.1e-42 144.5 0.1 1.6 2 DEAD DEAD/DEAH box helicase 1.5e-27 95.2 0.7 5.8e-27 93.3 0.3 2.0 2 Helicase_C Helicase conserved C-terminal domain 7.3e-05 22.4 0.2 0.00021 20.9 0.1 1.8 1 AAA_19 Part of AAA domain 0.00043 19.9 0.0 0.0021 17.6 0.0 2.0 2 AAA_30 AAA domain 0.00072 19.4 0.1 0.0013 18.5 0.1 1.5 1 ResIII Type III restriction enzyme, res subunit 0.0098 14.9 0.1 0.034 13.2 0.0 1.8 2 CMS1 U3-containing 90S pre-ribosomal complex subuni ------ inclusion threshold ------ 0.015 14.9 0.0 0.028 14.0 0.0 1.4 1 Helicase_RecD Helicase 0.032 12.6 0.0 1.8 6.9 0.0 2.2 2 DUF1253 Protein of unknown function (DUF1253) 0.068 11.8 0.7 0.19 10.4 0.1 1.8 2 TIP49 TIP49 C-terminus 0.082 12.0 0.0 0.17 10.9 0.0 1.5 1 tRNA-synt_1b tRNA synthetases class I (W and Y) 0.089 12.5 0.1 0.2 11.4 0.0 1.6 1 Fanconi_A Fanconi anaemia group A protein Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 144.5 0.1 1.5e-45 2.1e-42 2 164 .. 59 220 .. 58 224 .. 0.94 2 ? -2.7 0.0 2.6 3.5e+03 71 102 .. 296 330 .. 263 342 .. 0.64 Alignments for each domain: == domain 1 score: 144.5 bits; conditional E-value: 1.5e-45 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtl 61 +iQ++a++ +++g+d++++a+ G+GKT+ f+i ++q+l ++ ++ +ali+aPtreLa+q++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 59 AIQQRAVKPMITGRDIIAQAQSGTGKTATFAIGILQRLNSSiRECQALILAPTRELAQQIV 119 69**************************************99999**************** PP HHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 62 nnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrl 122 + ++ +++ ++l+++ ++gg+a + ++ + l++gv+ivvgTpgr++d+++++ l+l +++l Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 120 KVASALGDFMNLKIHGCVGGTAVR-EDMKILSDGVHIVVGTPGRVHDMINRRALRLDNIQL 179 **********************77.788888788*****************999******* PP EEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-T.H CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF DEAD 123 lVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlp.k 164 +VlDEad++ls gf+dq++++ + + ++++q+ ++SAT+p + Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 180 FVLDEADEMLSRGFKDQIYDVFKFM--PESVQCAIFSATMPlE 220 ************************9..555**********944 PP == domain 2 score: -2.7 bits; conditional E-value: 2.6 SSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 71 pklrvlliiggvalardqlsvl....dngvdivvgT 102 ++ v ++g++++++++l + ++ +++++T Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 296 RDFTVSSMHGDMDQRERDL-IMrefrSGSSRVLITT 330 3456777777777443333.2246665556666665 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.1 0.0 1.3 1.7e+03 10 38 .. 210 237 .. 203 239 .. 0.79 2 ! 93.3 0.3 4.3e-30 5.8e-27 3 78 .] 293 368 .. 291 368 .. 0.96 Alignments for each domain: == domain 1 score: -1.1 bits; conditional E-value: 1.3 EEEESTTSTHHHHHHHHHHHHTTSSSEEE CS Helicase_C 10 vailhgelpqnereeileqfnagkskvlv 38 +a + + +++ e +e+ ++f + ++lv Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 210 CA-IFSATMPLEVLEVTKKFMREPIRILV 237 44.44557888899999***999999997 PP == domain 2 score: 93.3 bits; conditional E-value: 4.3e-30 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprs 63 ++++++ v +hg++ q+er+ i+++f++g+s+vl++t+ ++rGid+++v++Vin+dlp++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 293 MTARDFTVSSMHGDMDQRERDLIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 353 66788999***************************************************** PP HHHHHHHHTTSSTTT CS Helicase_C 64 vtsyiQriGRtgRag 78 +++yi+riGR gR+g Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 354 RENYIHRIGRSGRFG 368 *************87 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.9 0.1 1.5e-07 0.00021 8 62 .. 70 122 .. 62 161 .. 0.82 Alignments for each domain: == domain 1 score: 20.9 bits; conditional E-value: 1.5e-07 AAA_19 8 agnpllvvtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraakrlserl 62 +g+ +++ ++ GtGKT+t a +i ++l + + l++apt++ a+++ ++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 70 TGRDIIA-QAQSGTGKTATFAIGILQRL--NSSIrECQALILAPTRELAQQIVKVA 122 4788999.********************..45666778*************97776 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.6 0.0 1.6e-06 0.0021 4 108 .. 59 191 .. 57 200 .. 0.77 2 ? -1.7 0.0 1.3 1.8e+03 48 84 .. 275 311 .. 261 326 .. 0.80 Alignments for each domain: == domain 1 score: 17.6 bits; conditional E-value: 1.6e-06 AAA_30 4 aeQkeaveavltsgdrvavvqGpAGtGKttvlka..lrealeaa.gkrviglAptgkaakv 61 a Q++av+ ++t +d + q+ GtGKt + + l+++ ++ + + ++lApt + a++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 59 AIQQRAVKPMITGRD--IIAQAQSGTGKTATFAIgiLQRLNSSIrECQALILAPTRELAQQ 117 5699******99998..67789******98654332666666643589************* PP AAA_30 62 Leee........................lgiearTiasllerldkaeaegrke...ldakt 95 + + + i ++ ++ ++++ ++ ++ +++ ld+ + Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 118 IVKVasalgdfmnlkihgcvggtavredMKILSDGVHIVVGTPGRVHDMINRRalrLDNIQ 178 8877677888888888777777777777668888888888877777766555588899999 PP AAA_30 96 llvvDEAgmvdtr 108 l+v+DEA + +r Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 179 LFVLDEADEMLSR 191 ******9776555 PP == domain 2 score: -1.7 bits; conditional E-value: 1.3 AAA_30 48 rviglAptgkaakvLeeelgiearTiasllerldkae 84 + i++ t + ++ L+e++ ++ T++s+ ++ d++e Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 275 QAIIYCNTRRKVDWLTEQMTARDFTVSSMHGDMDQRE 311 5677788999999999999999999999998888865 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.5 0.1 9.7e-07 0.0013 26 68 .. 72 120 .. 55 217 .. 0.78 Alignments for each domain: == domain 1 score: 18.5 bits; conditional E-value: 9.7e-07 SEEEEEESTTSTHHHHHHH.HHHHH-S.....-EEEEESSHHHHHHHHH CS ResIII 26 krglivmaTGtGKTlvaas.liarlar.....kflflvprkelleqale 68 + ++ ++ GtGKT + a +++rl + ++l+l+p++el +q + Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 72 RDIIAQAQSGTGKTATFAIgILQRLNSsirecQALILAPTRELAQQIVK 120 66789999********996355666669999***************875 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.2 0.0 2.5e-05 0.034 178 209 .. 153 184 .. 142 195 .. 0.91 2 ? -2.1 0.0 1.2 1.6e+03 31 68 .. 256 295 .. 254 304 .. 0.76 Alignments for each domain: == domain 1 score: 13.2 bits; conditional E-value: 2.5e-05 CMS1 178 igiavGtpgRiadLleeeslsvdeLkrivlDa 209 + i vGtpgR+ d+++ +l +d+++ vlD Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 153 VHIVVGTPGRVHDMINRRALRLDNIQLFVLDE 184 7799**************************96 PP == domain 2 score: -2.1 bits; conditional E-value: 1.2 CMS1 31 rkkeklketqDveag..lneavarmdpelLadylasklkr 68 r++ kl + D a +++a++ + + +d+l+++++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 256 REEWKLDTLSDLYATltITQAIIYCNTRRKVDWLTEQMTA 295 6777888888888875578999999999999999888765 PP >> Helicase_RecD Helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.0 2e-05 0.028 3 58 .. 77 137 .. 75 191 .. 0.64 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 2e-05 Helicase_RecD 3 tAdRGRGKSaalGlalaalvaegk..snilvtapskenvktlfeflekglealglke...e 58 +A+ G+GK+a+ ++ + + ++++ ++ l+ ap++e ++++++ + + + ++lk Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 77 QAQSGTGKTATFAIGILQRLNSSIreCQALILAPTRELAQQIVKVASALGDFMNLKIhgcV 137 6999******9999998888887667******************99766555555545562 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.3 0.0 0.016 22 33 56 .. 98 121 .. 76 131 .. 0.86 2 ? 6.9 0.0 0.0013 1.8 297 387 .. 270 358 .. 259 368 .. 0.85 Alignments for each domain: == domain 1 score: 3.3 bits; conditional E-value: 0.016 DUF1253 33 qgftrpkvLillpfrniakevvdl 56 ++ ++ Lil p+r+ a+++v+ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 98 SSIRECQALILAPTRELAQQIVKV 121 67778999*************985 PP == domain 2 score: 6.9 bits; conditional E-value: 0.0013 DUF1253 297 eskekgvlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkgrkkiLLvt 357 + ++ + +i+ + + +++ +++++++ +++ ++++ + + F +g+ ++L++t Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 270 TLTITQAIIYCNTRRKVDWLTEQMTARDFTVSSMHGDMDQRERDLIMREFRSGSSRVLITT 330 55566777777777777778899999999999999999*********************** PP DUF1253 358 eRlhfyrRykikgvkkvifyslPefpefYs 387 + l r + +++v+ vi y lP+++e Y Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 331 DLLA--RGIDVQQVSLVINYDLPTNRENYI 358 9776..89*****************99886 PP >> TIP49 TIP49 C-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 0.1 0.00014 0.19 47 81 .. 68 103 .. 58 112 .. 0.87 2 ? -1.0 0.0 0.39 5.2e+02 94 121 .. 220 247 .. 203 343 .. 0.76 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00014 TIP49 47 klaGravLlaGppgtGkta.laiaiskelgedvpfv 81 ++Gr ++ + ++gtGkta ai+i + l++++ + Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 68 MITGRDIIAQAQSGTGKTAtFAIGILQRLNSSIREC 103 589***************967********9998755 PP == domain 2 score: -1.0 bits; conditional E-value: 0.39 TIP49 94 kktevltqalRksigvrikeekevleGe 121 + ev + +R i + +k e+ leG Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 220 EVLEVTKKFMREPIRILVKKEELTLEGI 247 4567888889999999999999999984 PP >> tRNA-synt_1b tRNA synthetases class I (W and Y) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.9 0.0 0.00013 0.17 43 113 .. 300 372 .. 284 398 .. 0.81 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.00013 EEHHHHCTTTTT..SSHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEECHHHHTCH.HHHHH CS tRNA-synt_1b 43 iaDltAligdps.kaeerklrkreeelenakaqlakgldpekaeivlqsewlehl.elael 101 + +++ +++ + + +r++r+ + ++ + +la+g+d +++++v++++ + + +++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 300 VSSMHGDMDQRErDLIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNReNYIHR 360 56666667777767778888888888888899*******************9876589999 PP HHHHCTCHCHHH CS tRNA-synt_1b 102 lrdlgklgslnr 113 + + g++g+ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 361 IGRSGRFGRKGV 372 998888887655 PP >> Fanconi_A Fanconi anaemia group A protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 0.00014 0.2 27 60 .. 265 297 .. 260 301 .. 0.82 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.00014 Fanconi_A 27 aellkavdvCaevleClekrkvsWlvlfqltekd 60 ++l ++ + +++ C +rkv Wl q+t +d Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763382 265 SDLYATLTITQAIIYCNTRRKVDWLT-EQMTARD 297 5677788999***************7.4777777 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (407 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 518 (0.0349268); expected 296.6 (0.02) Passed bias filter: 439 (0.0296002); expected 296.6 (0.02) Passed Vit filter: 39 (0.00262963); expected 14.8 (0.001) Passed Fwd filter: 11 (0.00074169); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 0.27u 0.46s 00:00:00.73 Elapsed: 00:00:01.17 # Mc/sec: 908.04 // Query: Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196761444 [L=512] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-29 103.1 0.1 2.1e-29 102.2 0.0 1.5 2 DEAD DEAD/DEAH box helicase 2e-22 78.8 0.1 3.8e-22 77.9 0.0 1.5 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.11 10.8 0.0 0.16 10.2 0.0 1.1 1 Terminase_GpA Phage terminase large subunit (GpA) Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 102.2 0.0 4.1e-33 2.1e-29 2 167 .. 88 254 .. 87 256 .. 0.85 2 ? -3.4 0.0 1.2 5.8e+03 72 102 .. 334 367 .. 323 369 .. 0.70 Alignments for each domain: == domain 1 score: 102.2 bits; conditional E-value: 4.1e-33 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtl 61 +iQae+ip i+ g+d++++a+ G+GKT af+ +++++ + ++al+++PtreLa q++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196761444 88 QIQAETIPRIIMGRDLIAQAQSGAGKTVAFVSGMLSRINPMnNFTQALCLTPTRELAIQIV 148 79************************************9988888**************** PP HHHHHHTTT..SSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTE CS xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 62 nnlkqfkky..pklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqv 120 +++ +++ p + +l i+g++ a+dq ++ivvgTpg+++ +s + ln ++v Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196761444 149 RDAVIPLSKrlPMVTHALGISGSEPAKDQP-----SAHIVVGTPGTIKRWISIRYLNPKSV 204 **9888877777777777788888787776.....589**************9999*9*** PP EEEEEETHHHHHSTTTHH...HHHHHHHHSHHCTTSEEEEEESS-THHHH CS xxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 121 rllVlDEadrllsqgfsd...qlnqilqilcdgkrlqvivlSATlpkdvk 167 ++V+DEad++ ++++ ++i + + +++q++++SAT +++v Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196761444 205 DIFVVDEADTMVGNSQKAkslGAETIFIKKQLRENCQILFFSATYSEEVI 254 *************8777754444444444333446**********97765 PP == domain 2 score: -3.4 bits; conditional E-value: 1.2 SCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 72 klrvlliiggvalardqlsvl....dngvdivvgT 102 +l+v +++++ + ++++l + ++ +++++T Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196761444 334 GLEVSVLHSDLEREQRDLV-MesfrRGDSKVLITT 367 6788888888885544443.358887788888888 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.9 0.0 7.8e-26 3.8e-22 4 78 .] 331 414 .. 328 414 .. 0.89 Alignments for each domain: == domain 1 score: 77.9 bits; conditional E-value: 7.8e-26 HHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSS.... CS Helicase_C 4 ekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl.... 60 + g++v +lh++l+ ++r+ ++e+f++g+skvl++tnv++rG+d+p+v vV+n+d+ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196761444 331 IRDGLEVSVLHSDLEREQRDLVMESFRRGDSKVLITTNVLARGVDVPAVAVVVNYDIpter 391 578999***************************************************6666 PP .....SSSHHHHHHHHTTSSTTT CS Helicase_C 61 .....prsvtsyiQriGRtgRag 78 ++++y++riGR+gR+g Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196761444 392 vdgviVPDTANYLHRIGRCGRFG 414 66666556666**********97 PP >> Terminase_GpA Phage terminase large subunit (GpA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 0.0 3.3e-05 0.16 45 150 .. 112 219 .. 103 227 .. 0.83 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 3.3e-05 Terminase_GpA 45 GkTe.lllnwigyvidndp.apmlvvqptkddakefskdrldpmiraspalrerlapsksr 103 GkT + ++++++ ++ ++l+++pt + a ++++d + p+ + p + +l+ s s+ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196761444 112 GKTVaFVSGMLSRINPMNNfTQALCLTPTRELAIQIVRDAVIPLSKRLPMVTHALGISGSE 172 56663444444444333335789**********************************9999 PP Terminase_GpA 104 dsdntlldkrfpggmllligansaanlrsksvryvilDEvdaypedv 150 ++++ + g ++ + s++ l ksv++ ++DE d + + Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196761444 173 PAKDQPSAHIVVGTPGTIKRWISIRYLNPKSVDIFVVDEADTMVGNS 219 999999999999*99**************************996665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (512 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 503 (0.0339154); expected 296.6 (0.02) Passed bias filter: 309 (0.0208347); expected 296.6 (0.02) Passed Vit filter: 27 (0.00182051); expected 14.8 (0.001) Passed Fwd filter: 3 (0.000202279); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.25u 0.32s 00:00:00.57 Elapsed: 00:00:00.91 # Mc/sec: 1468.67 // Query: Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 [L=1704] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-33 115.6 0.5 6.1e-15 55.6 0.2 4.1 3 Ribonuclease_3 Ribonuclease III domain 1.3e-24 86.6 0.4 8.9e-08 32.1 0.1 4.8 4 Ribonucleas_3_3 Ribonuclease-III-like ------ inclusion threshold ------ 0.093 12.8 0.0 0.56 10.3 0.0 2.2 2 Profilin Profilin Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.1 1.3 6.6e+03 13 43 .. 486 516 .. 481 622 .. 0.49 2 ! 55.2 0.0 1.6e-18 7.9e-15 1 112 [. 1236 1443 .. 1236 1445 .. 0.82 3 ! 55.6 0.2 1.2e-18 6.1e-15 1 113 [. 1568 1699 .. 1568 1700 .. 0.78 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 1.3 HHHHHHHHHHSTTSSHHHHHHHHHHHTSHHH CS Ribonuclease_3 13 laittylfetypdlhegklsklrsklvsnen 43 l i++ l + y dl+++++ +l + + +n Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 486 LSIRRFLNHLYNDLSSKRFKQLSGNAIDLRN 516 5666666666666666666665443332222 PP == domain 2 score: 55.2 bits; conditional E-value: 1.6e-18 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBH CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylre 59 erLef+GD +lk++++ l++ yp +eg l+++r+ lvsn+ l ++ +lg+ +y+r+ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1236 ERLEFIGDTFLKFITSLELYKLYPTKREGFLTDARKDLVSNTHLIHVSSELGIIKYMRA 1294 8*********************************************************8 PP HHHHHSTT--T...................................SSSSS.SC..... CS Ribonuclease_3 60 sefdppknwlp...................................lnkdlangk.... 79 + + +l + n+k Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1295 IPLSAGRMGLLfrppgstefsvnegfslwnehiitlqifrgpkksqI-----NDKkdes 1348 77777777777999999999988888888888777777777444431.....3336666 PP ........................................................... CS Ribonuclease_3 80 ........................................................... 79 Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1349 sddkassvdinmetnelsgkditskavisnesvkvvlkenseevvpdtpkvierlhids 1407 77788889999999999999999999999999999999999999998888888888875 PP ....................TSHHHHHHHHHHHHHHHHH CS Ribonuclease_3 80 ..grqsisydlk....eqsiadkvladvvEAliGaiyld 112 + y + +i++k+ ad++EA+iGa ++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1408 syA---SLYPRPlymlATKIKEKTPADLIEAIIGAFLVG 1443 431...22222234677899***************9975 PP == domain 3 score: 55.6 bits; conditional E-value: 1.2e-18 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBH CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylre 59 +r e+LGDa+l++ai+ l++ + +l eg+ls +++++ +ne la +lgl++y+++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1568 QRMEYLGDAILDFAIVVLLCKDF-SLTEGELSMMKNNMLNNESLAIKSLELGLYKYIIV 1625 79******************765.678*******************************6 PP HHHHHSTT--T...........SSSSS.SC............................. CS Ribonuclease_3 60 sefdppknwlp...........lnkdlangk.....................grqsisy 86 + ++ +++ + k + ++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1626 -PAEINQSIYKeingleakiasT-------KltilntkhsndlvvgeinrkvF----NE 1672 .7777777777677744444441.......36666666666678877744431....33 PP .......TSHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 87 dlkeqsiadkvladvvEAliGaiylds 113 lk +s k ad++E+li+aiylds Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1673 VLKMKSELIKPVADMFESLIAAIYLDS 1699 344555678****************97 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.3 0.0 3.3e-11 1.6e-07 20 80 .. 1233 1294 .. 1223 1310 .. 0.88 2 ! 7.1 0.0 0.00094 4.7 92 121 .. 1425 1454 .. 1407 1458 .. 0.88 3 ! 32.1 0.1 1.8e-11 8.9e-08 3 80 .. 1550 1625 .. 1548 1651 .. 0.86 4 ! 9.8 0.0 0.00014 0.69 88 111 .. 1676 1699 .. 1654 1703 .. 0.85 Alignments for each domain: == domain 1 score: 31.3 bits; conditional E-value: 3.3e-11 Ribonucleas_3_3 20 gyNerLefLGdavLelvvseyllek.akkdegeltkklaslvseeslaeiakelgLgkv 77 + erLef+Gd L++++s l++ ++k+eg lt +++lvs+++l +++elg+ k+ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1233 INFERLEFIGDTFLKFITSLELYKLyPTKREGFLTDARKDLVSNTHLIHVSSELGIIKY 1291 478***************9999998356679**************************** PP Ribonucleas_3_3 78 lrl 80 +r Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1292 MRA 1294 *97 PP == domain 2 score: 7.1 bits; conditional E-value: 0.00094 Ribonucleas_3_3 92 rekvladaleAliGAiyldkGaeeakefve 121 +ek ad++eA+iGA + +G+e+a+++v+ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1425 KEKTPADLIEAIIGAFLVGGGIESASTVVK 1454 677789********************9997 PP == domain 3 score: 32.1 bits; conditional E-value: 1.8e-11 Ribonucleas_3_3 3 elllqaltHkSyangrkgyNerLefLGdavLelvvseyllekakkdegeltkklaslvs 61 +ll++a+t + n + +N+r+e+LGda+L+++++ +l ++++ egel+ +++++++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1550 NLLEEAFTYNTLPN--QINNQRMEYLGDAILDFAIVVLLCKDFSLTEGELSMMKNNMLN 1606 68888888777764..689**************************************** PP Ribonucleas_3_3 62 eeslaeiakelgLgkvlrl 80 +esla + elgL k++ + Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1607 NESLAIKSLELGLYKYIIV 1625 ****************998 PP == domain 4 score: 9.8 bits; conditional E-value: 0.00014 Ribonucleas_3_3 88 essgrekvladaleAliGAiyldk 111 +s++ k +ad++e+li+Aiyld+ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1676 MKSELIKPVADMFESLIAAIYLDS 1699 566777889*************96 PP >> Profilin Profilin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 0.67 3.3e+03 4 35 .. 1044 1074 .. 1043 1085 .. 0.83 2 ? 10.3 0.0 0.00011 0.56 34 115 .. 1589 1670 .. 1578 1675 .. 0.90 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.67 HHHHTTTGGGSS-SEEEEEETTS-EEEE-TT- CS Profilin 4 ayvdenLvasgklekAaIigkdgsvwAssegf 35 yv+ +Lv+ g+ A++ig d s A+ ++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1044 RYVS-YLVSRGRERLAVVIGDDPSNEAKRVTV 1074 7999.****************99888877665 PP == domain 2 score: 10.3 bits; conditional E-value: 0.00011 T-----HHHHHHHHHHHHSTCHHHHH-EEETTEEEEEEEEE.TTEEEEEETTEEEEEEE CS Profilin 34 gfaalspeEvtaivkafedpsslaesGltlggqKyvvirae.dkslygkkgkgGvviak 91 +f +l++ E++ + +++ +++sla + l+lg Ky+++ ae ++s+y + + + ia Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1589 DF-SLTEGELSMMKNNMLNNESLAIKSLELGLYKYIIVPAEiNQSIYKEINGLEAKIAS 1646 57.8999********************************9868888877777779**** PP -SSEEEEEEEETTS-HHHHHHHHH CS Profilin 92 tkqalviavykepvqpgqankvve 115 tk +++ +++++ g++n++v Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763732 1647 TKLTILNTKHSNDLVVGEINRKVF 1670 *************99999999885 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1704 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 860 (0.0579866); expected 296.6 (0.02) Passed bias filter: 192 (0.0129459); expected 296.6 (0.02) Passed Vit filter: 22 (0.00148338); expected 14.8 (0.001) Passed Fwd filter: 3 (0.000202279); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.80 # Mc/sec: 5560.01 // Query: Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196764276 [L=709] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-43 147.2 0.1 1.1e-41 142.1 0.0 3.0 2 DEAD DEAD/DEAH box helicase 6.1e-27 93.3 0.0 2.3e-26 91.4 0.0 2.1 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.02 13.9 0.0 0.02 13.9 0.0 3.2 2 CMS1 U3-containing 90S pre-ribosomal complex subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 142.1 0.0 2.3e-45 1.1e-41 2 168 .. 279 491 .. 278 492 .. 0.83 2 ? 1.0 0.0 0.051 2.5e+02 60 101 .. 578 622 .. 564 628 .. 0.72 Alignments for each domain: == domain 1 score: 142.1 bits; conditional E-value: 2.3e-45 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT..........EEEEEES CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq..........kalivaP 52 piQ++aip l+g+d+++ aeTGsGKT+aflip++ +++ + a+++aP Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196764276 279 PIQRQAIPVGLSGRDIIGIAETGSGKTAAFLIPMLAYMIKLPIHyikrcneqgpLAVVMAP 339 8**********************************99987533379999999********* PP SHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 53 treLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstg 113 treLa+q+ ++++++ky+ ++ ++++gg++++ dq +l++gv+iv+gTpgr++d ++++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196764276 340 TRELAQQIEMECQKLAKYTTFNSCCVVGGQDIE-DQGYQLRRGVEIVIGTPGRMVDCIENN 399 *******************************99.******999*****************9 PP SSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCT............T.......... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............x.......... RF DEAD 114 klnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgk............r.......... 152 l l q++++VlDEadr+ ++gf++q+ +l ++ + + Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196764276 400 YLVLNQCNYVVLDEADRMVDMGFEPQVIAVLDAMGGLLksedenqleqqvQslstlissht 460 99***********************666655444222223333334333303333444455 PP ...............SEEEEEESS-THHHHH CS ...............xxxxxxxxxxxxxxxx RF DEAD 153 ...............lqvivlSATlpkdvkk 168 + + ++SAT+p +v++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196764276 461 itsanntstneptlyRITAMFSATMPAEVER 491 5555666777788866799999999999886 PP == domain 2 score: 1.0 bits; conditional E-value: 0.051 HHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxx RF DEAD 60 tlnnlkqfkkypklrvlliiggvalardqlsvl....dngvdivvg 101 t++ + ++++ ++ v +++gg++++ ++++ l +n++ i+v+ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196764276 578 TCDIIGKYLETLNYPVGVLHGGKSQD-QREETLenfrKNKILILVA 622 4455556666678899*******966.4444445877777777765 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.4 0.0 4.7e-30 2.3e-26 1 78 [] 584 661 .. 584 661 .. 0.98 Alignments for each domain: == domain 1 score: 91.4 bits; conditional E-value: 4.7e-30 HHHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSS CS Helicase_C 1 lllekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlp 61 ++le +++v +lhg+ +q++ree+le+f+++k +lva++va+rG+d+ dv++V n+dlp Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196764276 584 KYLETLNYPVGVLHGGKSQDQREETLENFRKNKILILVASDVAARGLDISDVSHVYNYDLP 644 58999******************************************************** PP SSHHHHHHHHTTSSTTT CS Helicase_C 62 rsvtsyiQriGRtgRag 78 ++y +riGRtgRag Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196764276 645 NKIENYTHRIGRTGRAG 661 ***************97 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -15.6 13.4 3 1.5e+04 28 45 .. 34 52 .. 5 113 .. 0.51 2 ? 13.9 0.0 4.1e-06 0.02 177 209 .. 381 413 .. 371 420 .. 0.88 Alignments for each domain: == domain 1 score: -15.6 bits; conditional E-value: 3 CMS1 28 kkerkkeklketq.Dveag 45 +kerk+++lk+ D +g Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196764276 34 EKERKENELKKGHdDFISG 52 4445555554444222222 PP == domain 2 score: 13.9 bits; conditional E-value: 4.1e-06 CMS1 177 rigiavGtpgRiadLleeeslsvdeLkrivlDa 209 + i +GtpgR++d +e++ l +++ +++vlD Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196764276 381 GVEIVIGTPGRMVDCIENNYLVLNQCNYVVLDE 413 57899***************************6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (709 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1661 (0.111995); expected 296.6 (0.02) Passed bias filter: 298 (0.020093); expected 296.6 (0.02) Passed Vit filter: 31 (0.00209022); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.39u 0.38s 00:00:00.77 Elapsed: 00:00:01.01 # Mc/sec: 1832.40 // Query: Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196767666 [L=496] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-43 148.3 0.0 5e-43 146.5 0.0 1.8 2 DEAD DEAD/DEAH box helicase 1.8e-27 94.9 0.2 5.2e-27 93.5 0.0 1.9 2 Helicase_C Helicase conserved C-terminal domain 0.00018 21.4 0.0 0.00093 19.0 0.0 2.1 2 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.11 12.3 0.0 0.21 11.5 0.0 1.4 1 Helicase_C_2 Helicase C-terminal domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 146.5 0.0 1.3e-46 5e-43 2 168 .. 105 274 .. 104 275 .. 0.94 2 ? -1.1 0.0 0.3 1.1e+03 46 83 .. 327 360 .. 296 388 .. 0.51 Alignments for each domain: == domain 1 score: 146.5 bits; conditional E-value: 1.3e-46 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT.....EEEEEESSHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.....xxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq.....kalivaPtreL 56 piQ++ +p +l g+d+++ ++TGsGKTlafl+p++ ++ + + q +l++aPtreL Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196767666 105 PIQSQGWPMALLGRDMIGISATGSGKTLAFLLPAMIHINAQpYLQpgdgpIVLVLAPTREL 165 8**********99**********************99977655559*************** PP HHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHC CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 57 aeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnl 117 a q+ +++ +f++ +++ ++++ggv++ q + l+ gv+iv++Tpgrl+d+++tg nl Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196767666 166 ALQIKQECDKFGQSSEIKNTVVYGGVPKH-VQVRDLRVGVEIVIATPGRLIDHLETGITNL 225 ***************************66.999999999*****************988** PP TTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 118 sqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 +v +lVlDEadr+l++gf++ql++i+++++ ++q+++ SAT+pk+v+ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196767666 226 RRVTYLVLDEADRMLDMGFEPQLRKIVSQIRP--DRQTLMWSATWPKEVQA 274 *****************************944..59**********99986 PP == domain 2 score: -1.1 bits; conditional E-value: 0.3 EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 kalivaPtreLaeqtlnnlkqfkkypklrvlliiggva 83 k++i + t++ + q ++l+ + + +++g+++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196767666 327 KVIIFVETKKGCDQLTRSLRMQH----FPARAMHGDKS 360 55555555555555555553322....23445555555 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 0.0 2.9 1.1e+04 26 38 .. 319 331 .. 317 333 .. 0.79 2 ! 93.5 0.0 1.4e-30 5.2e-27 3 78 .] 345 420 .. 343 420 .. 0.97 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 2.9 HHHHHTTSSSEEE CS Helicase_C 26 leqfnagkskvlv 38 l++fn+g++ +++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196767666 319 LQNFNDGSKVIIF 331 6899999987775 PP == domain 2 score: 93.5 bits; conditional E-value: 1.4e-30 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprs 63 l+ +++++ ++hg+ +q+er+e+l++f+ g+s++l+at+va+rG+d++dv +V+nfd+p++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196767666 345 LRMQHFPARAMHGDKSQQERDETLSEFKLGRSPILIATDVAARGLDVKDVMLVVNFDMPTN 405 7888999****************************************************** PP HHHHHHHHTTSSTTT CS Helicase_C 64 vtsyiQriGRtgRag 78 ++yi+riGRtgRag Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196767666 406 IEDYIHRIGRTGRAG 420 *************97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 0.0 2.5e-07 0.00093 32 76 .. 124 179 .. 118 270 .. 0.69 2 ? -0.7 0.0 0.29 1.1e+03 49 81 .. 319 351 .. 306 377 .. 0.62 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 2.5e-07 ESTTSTHHHHHH.....HHHHHH-S.........-EEEEESSHHHHHHHHHHGGGGTGG CS ResIII 32 maTGtGKTlvaa.....sliarlar.........kflflvprkelleqaleefkkfesk 76 aTG+GKTl + + a+ +l+l+p++el q ++e +kf ++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196767666 124 SATGSGKTLAFLlpamiH---INAQpylqpgdgpIVLVLAPTRELALQIKQECDKFGQS 179 69*******999553332...333366799**********************9777654 PP == domain 2 score: -0.7 bits; conditional E-value: 0.29 H-S.....-EEEEESSHHHHHHHHHHG..GGGTGG...GE CS ResIII 49 lar.....kflflvprkelleqaleef..kkfeskkiefe 81 l + k++++v +k+ ++q+ + + + f+ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196767666 319 LQNfndgsKVIIFVETKKGCDQLTRSLrmQ-------HFP 351 333667789999999999999999999222.......222 PP >> Helicase_C_2 Helicase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.0 5.5e-05 0.21 10 85 .. 326 397 .. 300 413 .. 0.88 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 5.5e-05 Helicase_C_2 10 ggvlvffpSyslleevverlkeeleskkievfeekeesrekvleeykeskgaillavcrgk 70 +v++f+ + +++++ l+ + ++ ++++++r+++l+e+k ++ il+a+ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196767666 326 SKVIIFVETKKGCDQLTRSLRMQHFPARAMHGDKSQQERDETLSEFKLGRSPILIATD--V 384 57999999999999999999999888888888889***********************..9 PP Helicase_C_2 71 vseGidfsddllrav 85 G+d++d +l v Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196767666 385 AARGLDVKDVML--V 397 99******9775..4 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (496 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 427 (0.028791); expected 296.6 (0.02) Passed bias filter: 394 (0.026566); expected 296.6 (0.02) Passed Vit filter: 34 (0.0022925); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.29u 0.40s 00:00:00.69 Elapsed: 00:00:00.97 # Mc/sec: 1334.77 // Query: Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763552 [L=565] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-44 149.4 0.0 3e-42 143.9 0.0 2.5 3 DEAD DEAD/DEAH box helicase 7.8e-27 92.9 0.0 1.9e-26 91.7 0.0 1.7 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.049 12.7 0.0 0.049 12.7 0.0 3.0 3 CMS1 U3-containing 90S pre-ribosomal complex subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.5 0.1 0.017 85 71 134 .. 63 123 .. 48 143 .. 0.58 2 ! 143.9 0.0 6.2e-46 3e-42 2 169 .] 156 347 .. 155 347 .. 0.92 3 ? -3.8 0.0 1.5 7.2e+03 65 100 .. 420 458 .. 412 462 .. 0.64 Alignments for each domain: == domain 1 score: 2.5 bits; conditional E-value: 0.017 SSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSS.HCTT.EEEEEEETHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxx RF DEAD 71 pklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkl.nlsq.vrllVlDEad 129 +kl++ i + ++++d+++ + +r+++l ++ + ++ + ++++V DE d Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763552 63 KKLKEKSIDETIDKSTDNEQT----SSSNYIEDKRVKQLSNS-EVaSYRDeLGIIVHDESD 118 555666664444433233322....22234555566665554.45477777********** PP HHHST CS xxxxx RF DEAD 130 rllsq 134 l + Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763552 119 ALKYK 123 99874 PP == domain 2 score: 143.9 bits; conditional E-value: 6.2e-46 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT................. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq................. 45 piQ++++p +l+g+dv++ a+TGsGKTlaflip + l +++ + Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763552 156 PIQSQCWPPLLDGRDVIGIAATGSGKTLAFLIPGLLLLEKNR-Hnplisyidksnasggrq 215 8**********************************9886653.358*************** PP ....EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEE CS ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 ....kalivaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgT 102 ++li+aPtreLa q ++ +++++ + + ++i+ggv+++ q l+ g++ivv+T Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763552 216 kpcpRMLILAPTRELALQSYQVIEELGGP---KGVCIYGGVNKD-TQIASLRAGAEIVVAT 272 ***************************99...99********77.999999999******* PP HHHHHHHHHTTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTT.........SE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xx RF DEAD 103 pgrlddlvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkr.........lq 154 pgrl+dl+++++l+l++v + VlDEadr+l++gf++ +++il c k+ +q Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763552 273 PGRLLDLLEANSLSLQNVLYAVLDEADRMLDEGFEPSIRKILLN-CPIKNdnhstgsihRQ 332 **********999***************************9987.56663345566676** PP EEEEESS-THHHHHH CS xxxxxxxxxxxxxxx RF DEAD 155 vivlSATlpkdvkkl 169 ++++SAT+p++++kl Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763552 333 TVMFSATWPEEIRKL 347 *********998875 PP == domain 3 score: -3.8 bits; conditional E-value: 1.5 HHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxx RF DEAD 65 kqfkkypklrvlliiggvalardqlsvl....dngvdivv 100 ++f+ ++ ++ i+g+++++ d+ + l + + +++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763552 420 QRFLTSKGYTATSIHGDKSQS-DRFQALndfkTGSIPLLI 458 555555667888888888855.666666555555555555 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.7 0.0 3.8e-30 1.9e-26 2 78 .] 422 498 .. 421 498 .. 0.98 Alignments for each domain: == domain 1 score: 91.7 bits; conditional E-value: 3.8e-30 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSS CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlpr 62 +l+ kg+ ++ +hg+ +q++r + l++f++g+ + l+at+va+rG+d+p+v++Vin+++p Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763552 422 FLTSKGYTATSIHGDKSQSDRFQALNDFKTGSIPLLIATDVAARGLDIPQVEYVINYSFPL 482 8999********************************************************* PP SHHHHHHHHTTSSTTT CS Helicase_C 63 svtsyiQriGRtgRag 78 +v++y++riGRtgR g Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763552 483 TVEDYVHRIGRTGRGG 498 **************86 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 1.4 0.41 2e+03 22 38 .. 5 20 .. 2 40 .. 0.50 2 ? -4.9 7.9 2.2 1.1e+04 8 45 .. 42 79 .. 28 112 .. 0.51 3 ? 12.7 0.0 9.8e-06 0.049 179 209 .. 267 297 .. 255 303 .. 0.86 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 0.41 CMS1 22 ekkRskkkerkkeklke 38 +kk+skk++rk e++ e Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763552 5 DKKKSKKSKRKYENI-E 20 346666666666665.2 PP == domain 2 score: -4.9 bits; conditional E-value: 2.2 CMS1 8 rkaendekgkkeksekkRskkkerkkeklketqDveag 45 ++ ++ e+ +++k +k+ +k k+ k++ + et D + Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763552 42 NNHNDTERIERKKAKKEAKKLKKLKEKSIDETIDKSTD 79 22223334445555555555666666666666664433 PP == domain 3 score: 12.7 bits; conditional E-value: 9.8e-06 CMS1 179 giavGtpgRiadLleeeslsvdeLkrivlDa 209 i v tpgR++dLle +sls++++ + vlD Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763552 267 EIVVATPGRLLDLLEANSLSLQNVLYAVLDE 297 57899************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (565 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1728 (0.116513); expected 296.6 (0.02) Passed bias filter: 439 (0.0296002); expected 296.6 (0.02) Passed Vit filter: 57 (0.0038433); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.35u 0.41s 00:00:00.76 Elapsed: 00:00:01.08 # Mc/sec: 1365.59 // Query: Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763452 [L=678] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-47 159.7 0.0 1.1e-46 158.4 0.0 1.6 2 DEAD DEAD/DEAH box helicase 1.3e-28 98.6 0.0 3.9e-28 97.1 0.0 1.9 2 Helicase_C Helicase conserved C-terminal domain 6.5e-05 22.8 0.0 0.00011 22.1 0.0 1.3 1 ResIII Type III restriction enzyme, res subunit 0.0081 14.6 0.0 0.024 13.0 0.0 1.8 1 DUF1253 Protein of unknown function (DUF1253) ------ inclusion threshold ------ 0.21 10.6 0.1 0.42 9.6 0.1 1.4 1 CMS1 U3-containing 90S pre-ribosomal complex subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 158.4 0.0 3.6e-50 1.1e-46 1 167 [. 220 398 .. 220 400 .. 0.95 2 ? -2.1 0.0 0.76 2.3e+03 69 102 .. 470 506 .. 462 513 .. 0.68 Alignments for each domain: == domain 1 score: 158.4 bits; conditional E-value: 3.6e-50 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT..............EE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq..............ka 47 tp+Q+ +ip l g d++++a+TGsGKT+ fl pvi ill++ a Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763452 220 TPVQKYSIPIGLIGADLMACAQTGSGKTGGFLFPVITILLRK-GAlklqtpkqskasypSA 279 79**********99*************************995.23569************* PP EEEESSHHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 48 livaPtreLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrldd 108 li+aPtreL+ q+++++++f+ +lr ++i+gg + + dq++ ld+gvdi+++Tpgrl d Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763452 280 LILAPTRELVSQIFDEASKFCYCSGLRPVVIYGGISVQ-DQQRELDRGVDILIATPGRLTD 339 *********************99*************88.******99************** PP HHHTTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 109 lvstgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvk 167 l+ +g+++l+ +++lVlDEadr+l++gf++q+++i+q ++++q+ ++SAT+p +++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763452 340 LIDRGRIKLEAIQFLVLDEADRMLDMGFEPQIRRIVQEEGMPNKRQTFMFSATFPIQIQ 398 *****99*******************************888999**********96665 PP == domain 2 score: -2.1 bits; conditional E-value: 0.76 TTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 69 kypklrvlliiggvalardqlsvl....dngvdivvgT 102 + ++ + i+g+++++ +++ l +++ ++v+T Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763452 470 SRNNIPAISIHGDKSQK-EREDALklfkSGKRPVLVAT 506 44567788899998855.33333335888888888888 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.0 2 5.9e+03 7 28 .. 304 325 .. 299 329 .. 0.78 2 ! 97.1 0.0 1.3e-31 3.9e-28 3 78 .] 469 544 .. 467 544 .. 0.97 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 2 TS-EEEESTTSTHHHHHHHHHH CS Helicase_C 7 gikvailhgelpqnereeileq 28 g++ ++++g+++ +++++ l++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763452 304 GLRPVVIYGGISVQDQQRELDR 325 6778889999998888877765 PP == domain 2 score: 97.1 bits; conditional E-value: 1.3e-31 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSS CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprs 63 l++++i+++ +hg+ +q+ere+ l+ f++gk++vlvat+va+rG+d+ +v++Vinfdlp + Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763452 469 LSRNNIPAISIHGDKSQKEREDALKLFKSGKRPVLVATDVAARGLDISNVTNVINFDLPSN 529 7899********************************************************* PP HHHHHHHHTTSSTTT CS Helicase_C 64 vtsyiQriGRtgRag 78 ++yi+riGRtgR+g Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763452 530 LDDYIHRIGRTGRVG 544 *************86 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.1 0.0 3.7e-08 0.00011 32 183 .. 240 394 .. 233 395 .. 0.84 Alignments for each domain: == domain 1 score: 22.1 bits; conditional E-value: 3.7e-08 ESTTSTHHHHHH.HHHHHH-S.................-EEEEESSHHHHHHHHHHGGGGT CS ResIII 32 maTGtGKTlvaa.sliarlar.................kflflvprkelleqaleefkkfe 74 + TG+GKT + +i+ l+r +l+l+p++el++q +e Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763452 240 AQTGSGKTGGFLfPVITILLRkgalklqtpkqskasypSALILAPTRELVSQIFDEA---- 296 68******876644666666677777778999999*********************9.... PP GG...GEEEESSS-B---SEEEEEHHHHH................................ CS ResIII 75 skkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendes 135 sk++ ++ + ++v + + ++++q+++++ +i+++t +l+ ++++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763452 297 SKFCYCSGLRPVVIYGGISVQDQQRELDR-------GVDILIATPGRLTDLIDRG------ 344 999***99***999999877777777777.......899************9863...... PP ..HTHHHHTTT-SEEEEETGGGTTSTT....THHHHH....---SEEEEEESS-S CS ResIII 136 kseslealldefdviiiDEaHrlsakkk...yreile....fkkafllglTATpe 183 + +l++ ++++ DEa r+ ++ r+i++ +k + ++AT++ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763452 345 -----RIKLEAIQFLVLDEADRMLDMGFepqIRRIVQeegmPNKRQTFMFSATFP 394 .....45566777***********99987777777779*99778889******86 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.0 0.0 8e-06 0.024 290 386 .. 439 533 .. 369 542 .. 0.84 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 8e-06 DUF1253 290 vlpkltkeskekgvlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkgr 350 vl+ lt+++ e +l+f+ + +++ l++++i +i+ s+k+ + a klFk+g+ Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763452 439 VLDFLTNRQIEGLILVFVETKRGADLLEETLSRNNIPAISIHGDKSQKEREDALKLFKSGK 499 45555544444556888888888888999******************************** PP DUF1253 351 kkiLLvteRlhfyrRykikgvkkvifyslPefpefY 386 +++L+ t+ + r i +v++vi + lP++ + Y Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763452 500 RPVLVATDVAA--RGLDISNVTNVINFDLPSNLDDY 533 ********886..899**************998766 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.6 0.1 0.00014 0.42 178 209 .. 327 358 .. 316 363 .. 0.91 Alignments for each domain: == domain 1 score: 9.6 bits; conditional E-value: 0.00014 CMS1 178 igiavGtpgRiadLleeeslsvdeLkrivlDa 209 + i + tpgR++dL++ + ++++ ++ +vlD Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196763452 327 VDILIATPGRLTDLIDRGRIKLEAIQFLVLDE 358 567899************************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (678 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 423 (0.0285213); expected 296.6 (0.02) Passed bias filter: 301 (0.0202953); expected 296.6 (0.02) Passed Vit filter: 36 (0.00242735); expected 14.8 (0.001) Passed Fwd filter: 8 (0.000539411); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.32u 0.31s 00:00:00.63 Elapsed: 00:00:00.77 # Mc/sec: 2298.45 // Query: Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196762710 [L=259] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.7e-27 95.0 0.1 6.6e-27 93.1 0.0 2.0 2 Helicase_C Helicase conserved C-terminal domain Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.0 0.21 3.2e+03 25 40 .. 50 65 .. 48 66 .. 0.90 2 ! 93.1 0.0 4.4e-31 6.6e-27 2 78 .] 75 151 .. 74 151 .. 0.98 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 0.21 HHHHHHTTSSSEEEES CS Helicase_C 25 ileqfnagkskvlvat 40 il++f+ +++ v vat Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196762710 50 ILDEFKGQSTIVFVAT 65 8999*****9999998 PP == domain 2 score: 93.1 bits; conditional E-value: 4.4e-31 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSS CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlpr 62 ll++ g+++++lhg+++q +r+ l++f++g++++lvat+va+rG+d+p+v++V n+d+p Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196762710 75 LLRNLGFNAVCLHGQMNQAKRLGALNKFKSGQRNILVATDVASRGLDIPNVDLVCNYDIPS 135 799********************************************************** PP SHHHHHHHHTTSSTTT CS Helicase_C 63 svtsyiQriGRtgRag 78 +yi+r+GRt+Rag Chromulina-nebulosa-UTEXLB2642_CAMPEP_0196762710 136 HGKDYIHRVGRTARAG 151 **************97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (259 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1088 (0.0733599); expected 296.6 (0.02) Passed bias filter: 490 (0.0330389); expected 296.6 (0.02) Passed Vit filter: 46 (0.00310161); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.20u 0.32s 00:00:00.52 Elapsed: 00:00:00.75 # Mc/sec: 901.43 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187298146 [L=665] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-20 73.4 0.0 2.3e-20 72.7 0.0 1.3 1 DEAD DEAD/DEAH box helicase 2.9e-13 50.0 0.0 2.5e-12 47.0 0.0 2.1 1 ResIII Type III restriction enzyme, res subunit 6.7e-13 48.3 0.0 1.7e-12 47.0 0.0 1.6 1 Helicase_C Helicase conserved C-terminal domain 5.3e-05 22.1 0.0 8.4e-05 21.4 0.0 1.2 1 SNF2_N SNF2 family N-terminal domain ------ inclusion threshold ------ 0.032 13.4 0.0 0.18 11.0 0.0 2.1 1 PhoH PhoH-like protein 0.13 11.9 0.0 0.58 9.8 0.0 2.1 2 NADH_oxidored MNLL subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.7 0.0 9.2e-24 2.3e-20 2 162 .. 3 166 .. 2 174 .. 0.81 Alignments for each domain: == domain 1 score: 72.7 bits; conditional E-value: 9.2e-24 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHHHHHHHT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtlnnlkqfk 68 ++Q+ a+++i + ++++++++TG GKTl++++++ + l e+ ++k+l+v+Ptr+L++q+++ +++ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187298146 3 EYQRDAVDHIWE-RNTIINIRTGGGKTLIAVLALKKFL-ESyPKRKILFVVPTRALVQQQADYVRKQM 68 78*********7.******************9886655.665889*********************** PP TTSSCCEEEETTTSEHHHHHHHHH..TT.-SEEEEEHHHHHHHHHT.TSSHCTTEEEEEEETHHHHHS CS xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF DEAD 69 kypklrvlliiggvalardqlsvl..dngvdivvgTpgrlddlvst.gklnlsqvrllVlDEadrlls 133 + + +rv+ + g+ d++++ + d+ vgTp ++ + + g l+ s+++l++lDE+++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187298146 69 NDKVVRVAEMCGQEVDYWDHATWQnaLKIHDVFVGTPATFCSSFVDkGFLSASSFSLVILDECHNATG 136 9999******997764446666656644589********887777625559999***********999 PP T.TTHHHHHHHHHHSHHCTTSEEEEEESS- CS x.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 134 q.gfsdqlnqilqilcdgkrlqvivlSATl 162 + + + l++ + +l+ +++ +++ l+A + Dinobryon-sp-UTEXLB2267_CAMPEP_0187298146 137 NsPMASLLRDAIFRLAPAQQPRIVGLTASF 166 633333566666666666678899999876 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.0 0.0 1e-15 2.5e-12 5 181 .. 2 165 .. 1 168 [. 0.72 Alignments for each domain: == domain 1 score: 47.0 bits; conditional E-value: 1e-15 -HHHHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHH CS ResIII 5 rpyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar.....kflflvprkelleqal 67 r+yQ+ a++ + +++ +i++ TG GKTl+a +++++++ k+lf+vp+++l++q Dinobryon-sp-UTEXLB2267_CAMPEP_0187298146 2 REYQRDAVDHIW--------ERNTIINIRTGGGKTLIAVLALKKFLEsypkrKILFVVPTRALVQQQA 61 89**********........6799***************656666669999***************** PP HHGGGGTGG...GEEEESSS-B---SEEEEEHHHHH................................ CS ResIII 68 eefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendes 135 + +k ++k+ + + ++++ + ++ ++ k ++++ t ++ ++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187298146 62 DYVRKQMNDKVVRVAEMC----GQEVDYWD--HATW--QNALKIHDVFVGTPATFCSSFVD------- 114 888554444444333333....22222222..2222..22334456777777777666553....... PP ..HTHHHHTTT-SEEEEETGGGTTSTT.THHHHH........---SEEEEEESS CS ResIII 136 kseslealldefdviiiDEaHrlsakkkyreile........fkkafllglTAT 181 + + f ++i DE+H+++ ++ ++ +l+ +++ ++glTA Dinobryon-sp-UTEXLB2267_CAMPEP_0187298146 115 ---KGFLSASSFSLVILDECHNATGNSPMASLLRdaifrlapAQQPRIVGLTAS 165 ...2334556799***************77777777777999889999****95 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.0 0.0 6.8e-16 1.7e-12 15 74 .. 412 471 .. 397 474 .. 0.94 Alignments for each domain: == domain 1 score: 47.0 bits; conditional E-value: 6.8e-16 TTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHHTTS CS Helicase_C 15 gelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRt 74 g++ + ree l++f++g + lv+t+++e+Gid+ d+++Vi fd +++ iQ +GR+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187298146 412 GSMLDRTREEHLTRFRSGAVPLLVSTSALEEGIDVADCSFVIRFDTVKTTKAHIQGSGRA 471 689999*****************************************************4 PP >> SNF2_N SNF2 family N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.4 0.0 3.4e-08 8.4e-05 28 148 .. 17 136 .. 4 155 .. 0.82 Alignments for each domain: == domain 1 score: 21.4 bits; conditional E-value: 3.4e-08 EEE---TTSSCCHHHHHHHHHHCCCHS-.....EEEE--T.TTHHHHHHHHHHCS.T.T--EEE--HC CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF SNF2_N 28 giLaDemGlGKTvqvialilllkeeaerkkkkstLivvPs.slldqWvneierhvspsalrvlvyggq 94 i+ +G GKT+ ++ ++ e+ +++k +L vvP+ +l++q + +++ ++++ +rv + gq Dinobryon-sp-UTEXLB2267_CAMPEP_0187298146 17 TIINIRTGGGKTLIAVLALKKFLESYPKRK---ILFVVPTrALVQQQADYVRKQMNDKVVRVAEMCGQ 81 677777899***876665554444455543...*******99*************99999*******9 PP C...CHHHTT-SSSTT-SEEEE-CCHHH..TSTCTCHHHHTSEEEEEEETTCCGGTT CS x...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SNF2_N 95 k...kakksaaklladydvvittydvlralrekkrksvlkkvkwkrvvlDEahrlkn 148 + + ++ l+ +dv + t + + ++ +k l+ + v+lDE+h+ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187298146 82 EvdyWDHATWQNALKIHDVFVGTPATFC--SSFVDKGFLSASSFSLVILDECHNATG 136 9876555677899999************..99999999**9************9744 PP >> PhoH PhoH-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.0 0.0 7.1e-05 0.18 9 83 .. 5 79 .. 1 146 [. 0.72 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 7.1e-05 PhoH 9 QkeylealkkndivfaiGpaGtGKTylavalavealkkkkvkriiltRpavea.geelGflpgdleekvd 77 Q+ +++ + +++ ++ ++G GKT++av + + l++ ++i+++ p+ +++ +++ ++++kv Dinobryon-sp-UTEXLB2267_CAMPEP_0187298146 5 QRDAVDHIWERNTII-NIRTGGGKTLIAVLALKKFLESYPKRKILFVVPTRALvQQQADYVRKQMNDKVV 73 777888887665544.4589*********99888899999999988888775447778888888888887 PP PhoH 78 pylrpl 83 + Dinobryon-sp-UTEXLB2267_CAMPEP_0187298146 74 RVAEMC 79 666555 PP >> NADH_oxidored MNLL subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.0 1.3 3.2e+03 8 18 .. 200 210 .. 197 211 .. 0.88 2 ? 9.8 0.0 0.00023 0.58 20 40 .. 410 428 .. 398 443 .. 0.83 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 1.3 NADH_oxidored 8 vrdqwvwilvP 18 ++q++ i+vP Dinobryon-sp-UTEXLB2267_CAMPEP_0187298146 200 SNRQFIRIIVP 210 699*******9 PP == domain 2 score: 9.8 bits; conditional E-value: 0.00023 NADH_oxidored 20 GFvvGkyLDrkederltaFRd 40 G G +LDr +e+lt FR Dinobryon-sp-UTEXLB2267_CAMPEP_0187298146 410 G--AGSMLDRTREEHLTRFRS 428 3..69***************6 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (665 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 531 (0.0358034); expected 296.6 (0.02) Passed bias filter: 463 (0.0312184); expected 296.6 (0.02) Passed Vit filter: 42 (0.00283191); expected 14.8 (0.001) Passed Fwd filter: 6 (0.000404558); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.35u 0.36s 00:00:00.71 Elapsed: 00:00:00.84 # Mc/sec: 2066.51 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187274194 [L=415] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-42 145.4 0.1 1.5e-42 144.9 0.0 1.2 1 DEAD DEAD/DEAH box helicase 2.9e-24 84.7 0.1 5.3e-24 83.8 0.0 1.5 1 Helicase_C Helicase conserved C-terminal domain 0.00043 20.1 0.0 0.0015 18.3 0.0 1.8 1 ResIII Type III restriction enzyme, res subunit 0.0019 17.3 0.1 0.0038 16.3 0.1 1.5 1 CMS1 U3-containing 90S pre-ribosomal complex subunit ------ inclusion threshold ------ 0.013 14.0 0.2 0.019 13.5 0.1 1.1 1 RINT1_TIP1 RINT-1 / TIP-1 family Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 144.9 0.0 5e-46 1.5e-42 2 166 .. 66 228 .. 65 231 .. 0.94 Alignments for each domain: == domain 1 score: 144.9 bits; conditional E-value: 5e-46 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHHHHHHHT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtlnnlkqfk 68 piQ+eaip il g+dvl++a+ G+GKT+af+ip+++++ t + ++l+++PtreLa qt + +k++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187274194 66 PIQEEAIPIILAGRDVLARAKNGTGKTAAFIIPCLEKVDATvNAIQILMLVPTRELALQTSSIVKEIS 133 8****************************************9989*********************** PP TTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHHHHSTTT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 69 kypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadrllsqgf 136 k+++++v++ +gg++l+ d+ +l v+ivvgTpgr++dl +g +lsq++++++DEad+lls +f Dinobryon-sp-UTEXLB2267_CAMPEP_0187274194 134 KHMEIQVMVTTGGTNLR-DDIVRLYSPVHIVVGTPGRIHDLADKGLADLSQCKTIIMDEADKLLSPEF 200 ***************88.888899778****************9877********************* PP HHHHHHHHHHSHHCTTSEEEEEESS-THHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 137 sdqlnqilqilcdgkrlqvivlSATlpkdv 166 ++ l++++ ++ ++ ++q++++SAT+p v Dinobryon-sp-UTEXLB2267_CAMPEP_0187274194 201 QEVLESLIGKC-KP-DRQICLFSATFPVAV 228 *********95.55.79*********9655 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.8 0.0 1.8e-27 5.3e-24 3 78 .] 298 373 .. 296 373 .. 0.97 Alignments for each domain: == domain 1 score: 83.8 bits; conditional E-value: 1.8e-27 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHH CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQr 70 ++ g++++++h++++q +r++++++f++g ++ lv+++ + rGid+++vnvV+nfd+p++ ++y++r Dinobryon-sp-UTEXLB2267_CAMPEP_0187274194 298 ITELGYSCFYIHAKMKQPDRNRVFHEFRNGATRHLVCSDLFTRGIDIQSVNVVVNFDFPKTAETYLHR 365 6789**************************************************************** PP HTTSSTTT CS Helicase_C 71 iGRtgRag 78 iGR gR+g Dinobryon-sp-UTEXLB2267_CAMPEP_0187274194 366 IGRSGRFG 373 ******87 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.3 0.0 5e-07 0.0015 6 183 .. 66 225 .. 62 226 .. 0.76 Alignments for each domain: == domain 1 score: 18.3 bits; conditional E-value: 5e-07 HHHHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHH CS ResIII 6 pyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar......kflflvprkelleqal 67 p Qeeai +l+ + +l + GtGKT + +++ ++l+lvp++el q+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187274194 66 PIQEEAIPIILA-------GRDVLARAKNGTGKTAAFIIPCLEKVDatvnaiQILMLVPTRELALQTS 126 566777766663.......3667788999******9996666666677888****************9 PP HHGGGGTGG...GEEEESSS-B---SEEEEEHHHHH................................ CS ResIII 68 eefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendes 135 k+ sk++e++ ++ + ++ d + + i++ t ++h +++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187274194 127 SIV-KEISKHMEIQV----------MVTTGGTNLRDDIVRLYSPVHIVVGTPGRIHDLADKGL----- 178 666.66666666622..........23334555666667778889999999999999977643..... PP ..HTHHHHTTT-SEEEEETGGGTTSTT.THHHHH......---SEEEEEESS-S CS ResIII 136 kseslealldefdviiiDEaHrlsakkkyreile......fkkafllglTATpe 183 a l + + ii+DEa +l +++ ++e+le + + ++AT++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187274194 179 ------ADLSQCKTIIMDEADKLLSPE-FQEVLEsligkcKPDRQICLFSATFP 225 ......33456779*************.99999999999766677788999975 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.1 1.3e-06 0.0038 175 209 .. 157 191 .. 98 194 .. 0.69 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 1.3e-06 CMS1 175 ksrigiavGtpgRiadLleeeslsvdeLkrivlDa 209 s + i vGtpgRi dL +++ +++ k i++D Dinobryon-sp-UTEXLB2267_CAMPEP_0187274194 157 YSPVHIVVGTPGRIHDLADKGLADLSQCKTIIMDE 191 35689****************************96 PP >> RINT1_TIP1 RINT-1 / TIP-1 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.1 6.4e-06 0.019 205 282 .. 244 319 .. 233 338 .. 0.83 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 6.4e-06 .GHHHHHHHHHHTHHHHHHHHHHHHHT----SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH. CS RINT1_TIP1 205 FlrsiqlelldqflerLlsaleeyllmtstqesleddaelerlckvlnaaeylekkLedwsddvfFlq 272 +++++l+ ++qf + + + + l +t ++ d ++ + +c++ n +e+l kk++++ f+++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187274194 244 LMEELTLRGISQFYAFVEEKQKVHCL--NTLFTKLDINQSIIFCNSVNRVELLAKKITELGYSCFYIH 309 56778888889999999888666666..888899999******************************* PP .......... CS RINT1_TIP1 273 ervkenkdkg 282 +++k+ + + Dinobryon-sp-UTEXLB2267_CAMPEP_0187274194 310 AKMKQPDRNR 319 ****988766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (415 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 529 (0.0356685); expected 296.6 (0.02) Passed bias filter: 436 (0.0293979); expected 296.6 (0.02) Passed Vit filter: 48 (0.00323646); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.24u 0.34s 00:00:00.58 Elapsed: 00:00:00.79 # Mc/sec: 1371.25 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187270954 [L=882] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.8e-42 142.0 0.0 4.1e-20 72.3 0.0 2.8 2 Ribonuclease_3 Ribonuclease III domain 9e-29 100.0 2.3 1.3e-11 44.5 0.0 4.4 4 Ribonucleas_3_3 Ribonuclease-III-like ------ inclusion threshold ------ 0.039 13.6 0.0 0.09 12.4 0.0 1.6 1 Bile_Hydr_Trans Acyl-CoA thioester hydrolase/BAAT N-terminal Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.3 0.0 8.4e-24 4.1e-20 1 113 [. 376 559 .. 376 560 .. 0.81 2 ! 66.8 0.0 4.3e-22 2.1e-18 1 114 [] 704 858 .. 704 858 .. 0.74 Alignments for each domain: == domain 1 score: 72.3 bits; conditional E-value: 8.4e-24 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBHHHHHHSTT- CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylresefdppknw 68 erLefLGD++lkl++t +f+ yp heg l++ rsk+++n +l +a k+g+++ylr p n+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187270954 376 ERLEFLGDSLLKLITTVEVFRLYPTKHEGFLTNKRSKVINNAFLTDMAVKIGIDKYLRG---YPLSNG 440 8*********************************************************5...555555 PP -T....................SSSSS.SC...................................... CS Ribonuclease_3 69 lp....................lnkdlangk..................................... 79 ++ + + Dinobryon-sp-UTEXLB2267_CAMPEP_0187270954 441 KQnllvrppgmsltairnnislW-------Nqnvisgrsrsaggdgegeaeaaavdlsrsnntdmvne 501 55566888888777766655552.......14455555666666777777777778888888889999 PP ......................................TSHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 80 ......................grqsisydlk..eqsiadkvladvvEAliGaiylds 113 +++i ++++ ++ ++ k lad++EA+iG ++ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187270954 502 aiefrnltlmsvaptatcdvveYFKDIYTNPQqeNAIVKSKALADLMEAIIGSFFVMG 559 99999999999999999999996666666666678899**************999865 PP == domain 2 score: 66.8 bits; conditional E-value: 4.3e-22 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBHHHHHHSTT- CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylresefdppknw 68 +rLefLGDavl++a++t lf++ +++g+ls +s+ ++n+nl r++ lgl+++l + + Dinobryon-sp-UTEXLB2267_CAMPEP_0187270954 704 QRLEFLGDAVLDFAVVTLLFNHQRWASQGDLSGQKSNSTCNKNLGRIGALLGLYKHLD-----ILSTQ 766 7*******************776666***************************99888.....44445 PP -T...................SSSSS.SC....................................... CS Ribonuclease_3 69 lp...................lnkdlangk...................................... 79 l+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187270954 767 LEyefvkvdqtisalkaseapA-------Vvtpvdekevvndesasssssnsvkkrkkvvpvaavpvs 827 5555555667666544444440.......166666666666666777777777777777777666654 PP ..............TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 80 grqsisydlkeqsiadkvladvvEAliGaiyldsg 114 + +si+ ++ k ladvvEAl+Ga yldsg Dinobryon-sp-UTEXLB2267_CAMPEP_0187270954 828 RINSIQ----LSNGPSKALADVVEALFGAAYLDSG 858 223332....445688*****************97 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.8 0.0 5.3e-12 2.6e-08 21 81 .. 374 438 .. 356 448 .. 0.81 2 ! 5.0 0.0 0.0045 22 91 115 .. 539 563 .. 506 571 .. 0.83 3 ! 44.5 0.0 2.6e-15 1.3e-11 3 80 .. 686 762 .. 684 782 .. 0.87 4 ! 13.2 0.0 1.3e-05 0.064 89 116 .. 835 862 .. 808 875 .. 0.84 Alignments for each domain: == domain 1 score: 33.8 bits; conditional E-value: 5.3e-12 Ribonucleas_3_3 21 yNerLefLGdavLelvvseyllek.akkdegeltkklaslvseeslaeiakelgLgkvlrl...r 81 erLefLGd++L+l+++ +++ ++k eg lt+k+++++++ l ++a ++g++k+lr + Dinobryon-sp-UTEXLB2267_CAMPEP_0187270954 374 DSERLEFLGDSLLKLITTVEVFRLyPTKHEGFLTNKRSKVINNAFLTDMAVKIGIDKYLRGyplS 438 569*************99999988356679*****************************964444 PP == domain 2 score: 5.0 bits; conditional E-value: 0.0045 Ribonucleas_3_3 91 grekvladaleAliGAiyldkGaee 115 ++k lad++eA+iG ++ +G+e+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187270954 539 VKSKALADLMEAIIGSFFVMGGVEA 563 456799************9999886 PP == domain 3 score: 44.5 bits; conditional E-value: 2.6e-15 Ribonucleas_3_3 3 elllqaltHkSyangrkgyNerLefLGdavLelvvseyllekakk.degeltkklaslvseeslaeia 69 ++l++altH S ++ k++N+rLefLGdavL+++v+++l+++++ ++g+l+ ++++ ++++l +i+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187270954 686 KILDEALTHCSIQH--KPSNQRLEFLGDAVLDFAVVTLLFNHQRWaSQGDLSGQKSNSTCNKNLGRIG 751 7899********96..8************************9887367889999999*********** PP Ribonucleas_3_3 70 kelgLgkvlrl 80 lgL k+l + Dinobryon-sp-UTEXLB2267_CAMPEP_0187270954 752 ALLGLYKHLDI 762 *****999977 PP == domain 4 score: 13.2 bits; conditional E-value: 1.3e-05 Ribonucleas_3_3 89 ssgrekvladaleAliGAiyldkGaeea 116 s+g +k lad++eAl+GA yld+G + a Dinobryon-sp-UTEXLB2267_CAMPEP_0187270954 835 SNGPSKALADVVEALFGAAYLDSGGSIA 862 5677889****************97655 PP >> Bile_Hydr_Trans Acyl-CoA thioester hydrolase/BAAT N-terminal region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 1.8e-05 0.09 63 103 .. 84 132 .. 75 155 .. 0.74 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 1.8e-05 Bile_Hydr_Trans 63 pmGLlwSlkpeegkkselrlskkdvtsspltvevevasge.........e 103 p GL+wS++ +++ k+ ++ + +dv +++ +e ev++++ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187270954 84 PGGLFWSMRDDPNAKPDTQRRLSDVL-KYVRLEPEVDENNvekkpivsnK 132 67***********************8.88888888888875555554443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (882 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 435 (0.0293305); expected 296.6 (0.02) Passed bias filter: 263 (0.0177331); expected 296.6 (0.02) Passed Vit filter: 25 (0.00168566); expected 14.8 (0.001) Passed Fwd filter: 3 (0.000202279); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.35u 0.34s 00:00:00.69 Elapsed: 00:00:00.71 # Mc/sec: 3242.69 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 [L=3864] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-111 373.0 0.3 6.7e-111 371.7 0.1 1.7 2 RdRP RNA dependent RNA polymerase 3.9e-17 62.2 0.0 7.4e-17 61.3 0.0 1.4 1 DEAD DEAD/DEAH box helicase 2.3e-13 50.3 0.0 5.5e-13 49.1 0.0 1.6 1 ResIII Type III restriction enzyme, res subunit 2e-12 46.7 0.1 9.8e-12 44.5 0.0 2.3 2 Helicase_C Helicase conserved C-terminal domain 0.0011 18.9 1.0 0.005 16.8 0.7 2.2 1 Yippee-Mis18 Yippee zinc-binding/DNA-binding /Mis18, centrom ------ inclusion threshold ------ 0.059 13.5 0.0 0.22 11.6 0.0 2.0 1 AAA_22 AAA domain 0.094 11.5 0.0 0.18 10.6 0.0 1.3 1 T2SE Type II/IV secretion system protein Domain annotation for each model (and alignments): >> RdRP RNA dependent RNA polymerase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 371.7 0.1 3.1e-114 6.7e-111 1 572 [. 1333 1916 .. 1333 1923 .. 0.93 2 ? -2.3 0.0 0.62 1.3e+03 298 396 .. 3060 3158 .. 3037 3162 .. 0.73 Alignments for each domain: == domain 1 score: 371.7 bits; conditional E-value: 3.1e-114 RdRP 1 trvilegpelersnrvlrrygsdr.flrvkfpdedgsklrssrevvgervkkvlkegiki.ggrky 64 +rvi+++ +l +s+r+lr ++++ f +++f++e+g+ + ++ ++r+++vl+ g++i ++ k+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 1333 SRVIFDQSKLIKSSRLLRAFSDRYkFAYIQFREENGKNI-FNLAIYKSRYLEVLQSGLEIyNRCKF 1397 69******************55557**********9988.456669***************99*** PP RdRP 65 eflafsnsqlrehsvyffatdsgnrkrltaedirewlgdfsn...sqsvpakyaaRiglcfsttvp 127 +fl +s+sq r++++ ++++ + e++++ l++ +n + ++ +k ++R+g+ + + Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 1398 HFLLSSSSQCRDQTAILICCK----SVAEKESVLDSLIPTRNddfRDNP-SKHMSRLGQFCTADSE 1458 *********************....************888786766566.*************999 PP RdRP 128 tvtlkireieridDi....pegngyiftDGcGkisrdlarkiadelg..leetPsafQiRlgGaKG 187 + + ++ + D ++g+++i tDG+G+i + + k+ ++++ e+ sa+Q+R G KG Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 1459 V--YDDLLYQAVHDTddsyTSGSNRILTDGAGLIRASELTKLKQKYPtiVPENSSAIQFRQSGRKG 1522 4..4444445555555559999999************************9**************** PP RdRP 188 vla.v.dpel.......pgskiqlrpSmiKfseeddsehntleivsysrpptpayLnrqlillLst 244 vl+ + d +l ++ +i++r S +Kf +s hn+l +v+ s+ + p Ln+++++lL Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 1523 VLCeIqDSDLvdvfpliKDATIVFRNSTKKF----ESPHNQLCVVKASS-FVPLVLNQEILALLFS 1583 ***55666668888887777***********....**************.**************** PP RdRP 245 lgvpde...........vflelqeealkelreiltderaalellskvarlggvtlallqlldagfe 299 l + + + +lqe++l++l++ lt+ + a+++l+++++l + ++ + ++++gf+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 1584 LRYKFSseptsmwspakYVYDLQERELNRLAKSLTNASDACRALRSQCMLFDEKSFY-VMSNNGFD 1648 ****8888999999999*************************************999.9******* PP RdRP 300 pqkepflrsllkalvksklkdlkekaripvpksaylfgvaDetgvLeegevfvqvsldeddggese 365 ++ep + ++l+a++++ +k l++k +ip+ ++a+l+gv+D+ +L +e+f++v ++ ++e+e Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 1649 ILTEPMWANTLQAMYRHSIKSLRSKSHIPLSSGARLIGVPDPVDCLSDNEIFLKV--QRERNSEPE 1712 ******************************************************9..********* PP RdRP 366 vlegdvlvtRnPclhpgDiqkvravdkpelrhlkdvivFpskGd...rplaselsggDlDGDkyfv 428 v++g vl++RnP+l pgDi++v+avdkp+l +l +v+v p + + r+l +e+sggDlDGD++ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 1713 VITGSVLIFRNPSLDPGDIRLVTAVDKPQLGYLLNVVVIPAANKkitRSLSEECSGGDLDGDEFAI 1778 *****************************************777777******************* PP RdRP 429 iwdpdlvekfensppkrseepaeaekekssekarktkpleeevteeeieeffveayiksdslgris 494 iwd +l +p + ++p++ +++ +++++ ++v + +ef+v+ +++++lg+i+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 1779 IWDANL-----IPPSDLIFDPVD---YVALASDARVSSSGPDVLYKSCAEFVVS-AMANSHLGKIA 1835 ******.....999999999999...5555566667888899************.9********** PP RdRP 495 nahlkiadkee.gvsspeclrLaelfsdavDfpKtgvpvklerde...lrpkeypdfmekeekksv 556 hl+i+d+++ + +p +++La+ s+avDfpKtgvp +++++ +++ yp fme+++kks+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 1836 RTHLAISDQLPqRAADPIARNLARQQSIAVDFPKTGVPPQIPQEVrviVKENGYPSFMESKTKKSY 1901 ********************************************9**************9999997 PP RdRP 557 yksskilgklyrevke 572 + lg ly++++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 1902 -STTEPLGILYDRCVT 1916 .69999******9976 PP == domain 2 score: -2.3 bits; conditional E-value: 0.62 RdRP 298 fepqkepflrsllkalvksklkdlke..karipvpksaylfgvaDetgv.Leegevfvqvsldedd 360 f ++ f++sl ++++++ dl + ++pv++s++ + et v L e+ + + + Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 3060 FALDADAFMKSLKRRCRNHYNSDLNKstVSNFPVKNSTMF-SI-QETWVpLSHSEIAILT--RLLQ 3121 5578999************999999988899999999988.33.4443348888888863..6666 PP RdRP 361 ggesevleg.dvlvtRnPclhpgDiqkvravdkpelr 396 ++s++ + ++ n ++ D + ++av++p l+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 3122 LHCSNLSPQeFCDLCHNLGRLRIDSRFLTAVNRPLLD 3158 6666666666777777777777777777777777665 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 61.3 0.0 3.5e-20 7.4e-17 2 162 .. 392 550 .. 391 555 .. 0.80 Alignments for each domain: == domain 1 score: 61.3 bits; conditional E-value: 3.5e-20 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHH..HHHHHTCTTEEEEEESSHHHHHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipvi..qilletkdqkalivaPtreLaeqtlnnlkqf 67 + Q +a++ +l +++lv+ +TGsGKTl++++ ++ +++++ ++ + +v+ L++q++n +++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 392 DFQVQAFQRALL-RNLLVVVPTGSGKTLIACMIMMrfKQVKH-YRLMVAMVVDRVHLVHQQANVISSE 457 578889988884.9*****************98883344433.3338999999999****99999775 PP TTTSSCCEEEETTTSEHHHHHHHHH.TT.-SEEEEEHHHHHHHHHTTSS.HCTTEEEEEEETHHHHHS CS xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF DEAD 68 kkypklrvlliiggvalardqlsvl.dngvdivvgTpgrlddlvstgkl.nlsqvrllVlDEadrlls 133 + +l+v+ + g++++a ++l +++ + +v T g+l dl+s++k +l +++l+V+DE+++ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 458 T---GLSVCSLCGDTTTA-YIIEKLfKGEFNCLVCTAGSLYDLISKEKAfKLNRFSLIVFDECHHAGD 521 5...68**********99.6666666********************99989999************** PP TTTHHHHHHHHHHSHHCT..TSEEEEEESS- CS xxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF DEAD 134 qgfsdqlnqilqilcdgk..rlqvivlSATl 162 ++ ++++l +++++ +l+++ lSA + Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 522 NDH--LYTTLLDNIDRLSlrTLRLVGLSASP 550 432..23335555544444358899999976 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.1 0.0 2.6e-16 5.5e-13 16 182 .. 402 550 .. 384 552 .. 0.76 Alignments for each domain: == domain 1 score: 49.1 bits; conditional E-value: 2.6e-16 T.......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG. CS ResIII 16 lesiekedekkrglivmaTGtGKTlvaasliarlar......kflflvprkelleqaleefkkfeskk 77 l +++l+v +TG+GKTl+a+ ++ r+ + + ++v+r +l+ q + + ++++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 402 L--------LRNLLVVVPTGSGKTLIACMIMMRFKQvkhyrlMVAMVVDRVHLVHQQANVI--SSETG 459 3........5799***************99999999****99*******************..22222 PP ..GEEEESSS-B---SEEEEEHHHHH..................................HTHHHHTT CS ResIII 78 iefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealld 145 ++ ++ + g++ + e+ +k + + ++ t+ +l+ +++ ++ ++l+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 460 LSV-CSLC---------GDT-TTAYIIEKLFKGEFNCLVCTAGSLYDLISK----------EKAFKLN 506 222.2222.........222.2222234456778899***********996..........467889* PP T-SEEEEETGGGTTSTT..THHHHH......---SEEEEEESS- CS ResIII 146 efdviiiDEaHrlsakkk.yreile......fkkafllglTATp 182 +f +i++DE+H++++++ y +l+ +++ l+gl+A p Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 507 RFSLIVFDECHHAGDNDHlYTTLLDnidrlsLRTLRLVGLSASP 550 ****************9997666666666777777789999977 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.1 0.0 3.3 7e+03 24 40 .. 473 489 .. 458 491 .. 0.81 2 ! 44.5 0.0 4.6e-15 9.8e-12 16 74 .. 755 813 .. 738 816 .. 0.91 Alignments for each domain: == domain 1 score: -3.1 bits; conditional E-value: 3.3 HHHHHHHTTSSSEEEES CS Helicase_C 24 eileqfnagkskvlvat 40 i+e+ +g++++lv+t Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 473 YIIEKLFKGEFNCLVCT 489 5899999*********9 PP == domain 2 score: 44.5 bits; conditional E-value: 4.6e-15 TSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHHTTS CS Helicase_C 16 elpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRt 74 +++ +++ l++f++g+ k++++t+v+e+Gid++++++V+ ++ +s ++iQ +GR+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 755 GMNRSSQVMELRKFRNGELKMIICTSVLEEGIDVKECDYVFRIGCQFSLIQMIQSRGRA 813 6888999999************************************************5 PP >> Yippee-Mis18 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 0.7 2.4e-06 0.005 3 73 .. 226 304 .. 224 313 .. 0.73 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 2.4e-06 Yippee-Mis18 3 fqCkkCktilgdslqlvs..rhgeelkaill.....knvtesvpverelttgeegkectvsdlsCag. 62 ++C kC+ +lgd +++ ++ ee ++il ++ + ++v+++ ++ + + + dl C++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 226 IRCVKCRVPLGDAQDFCFysKSAEEVEFILKpellhESKDKFIIVDKTSSCST-KLNRAYFDLLCKTn 292 79***************975555555555544433246666677777777777.5669*******855 PP Yippee-Mis18 63 .CnsvlGrkYvs 73 Cn+v+G++ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 293 dCNAVVGKMHYH 304 5******98665 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.0 0.0001 0.22 7 113 .. 406 534 .. 399 546 .. 0.65 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 0.0001 AAA_22 7 lvvtGesGvGKTtlarrlaeqldevaeaae.......karvv....fveapsst.spkellkkllral 62 l+v+ ++G+GKT+ a ++++++++v++ + + ++v v ++++ s +l+ + a+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 406 LLVVVPTGSGKTLIACMIMMRFKQVKHYRLmvamvvdRVHLVhqqaNVISSETGlSVCSLCGDTTTAY 473 567779****************99999999****9984444433223333333366677777777777 PP AAA_22 63 glpakg..........rltteelleallralrrrrv......glliiDEaqhLr.seelleelrdlld 113 ++ +++ +l + +++ l++ DE +h ++ l+++l d d Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 474 IIEKLFkgefnclvctAGSLYDL-------ISKEKAfklnrfSLIVFDECHHAGdNDHLYTTLLDNID 534 76666677555554433333333.......3333334444558*********8555555555544444 PP >> T2SE Type II/IV secretion system protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.0 8.6e-05 0.18 98 180 .. 374 458 .. 371 476 .. 0.77 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 8.6e-05 T2SE 98 ssaslsledlaakgalkkkla.evlrqavqargnilvsGgTgsGKttllnallaeinkd...derivt 161 s+++++ ++l +g++ k+++ ++ ++a +n+lv +TgsGKt ++ ++ +++ + + Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 374 SPKDFQWNNLLRSGKTPKDFQvQAFQRA--LLRNLLVVVPTGSGKTLIACMIMMRFKQVkhyRLMVAM 439 5678889999999998888653566666..678999999********998777666655322555667 PP T2SE 162 iEDpvElqlegenqvqlna 180 + D v l +++n+++ ++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187297424 440 VVDRVHLVHQQANVISSET 458 8899999999999887765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (3864 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 554 (0.0373542); expected 296.6 (0.02) Passed bias filter: 266 (0.0179354); expected 296.6 (0.02) Passed Vit filter: 39 (0.00262963); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 1.33u 0.34s 00:00:01.67 Elapsed: 00:00:00.98 # Mc/sec: 10292.17 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187281372 [L=265] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-12 47.7 0.0 4.9e-12 45.5 0.0 2.0 2 Helicase_C Helicase conserved C-terminal domain Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.5 0.0 3.3e-16 4.9e-12 7 74 .. 54 130 .. 49 133 .. 0.88 2 ? -0.7 0.0 0.088 1.3e+03 21 35 .. 157 180 .. 154 221 .. 0.55 Alignments for each domain: == domain 1 score: 45.5 bits; conditional E-value: 3.3e-16 TS-EEEEST.........TSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHH CS Helicase_C 7 gikvailhg.........elpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvt 65 ++++a+l++ +++++ +++++f +g + lv+t vae+G+d+p++n+Vi fd+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187281372 54 KFRAAPLYAhgspatsslSISSSIAMDTIKSFGSGHINLLVCTVVAEEGMDIPAANLVIRFDPMIHSV 121 46666666666888888889999999****************************************** PP HHHHHHTTS CS Helicase_C 66 syiQriGRt 74 s++Q +GR+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187281372 122 SMVQGRGRA 130 ********6 PP == domain 2 score: -0.7 bits; conditional E-value: 0.088 HHHHHHHHHHTTSS.........S CS Helicase_C 21 ereeileqfnagks.........k 35 ++++i+++f a k + Dinobryon-sp-UTEXLB2267_CAMPEP_0187281372 157 QQLQIVKSFDAEKAlsdgnlvneQ 180 666777777666655554444431 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (265 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 681 (0.0459173); expected 296.6 (0.02) Passed bias filter: 445 (0.0300047); expected 296.6 (0.02) Passed Vit filter: 29 (0.00195536); expected 14.8 (0.001) Passed Fwd filter: 1 (6.74263e-05); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.19u 0.40s 00:00:00.59 Elapsed: 00:00:00.80 # Mc/sec: 864.67 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187286060 [L=244] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-28 98.9 0.0 1.8e-28 98.1 0.0 1.4 1 Helicase_C Helicase conserved C-terminal domain 0.00029 19.3 0.0 0.0015 17.0 0.0 1.9 1 DUF1253 Protein of unknown function (DUF1253) Domain annotation for each model (and alignments): >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 98.1 0.0 2.5e-32 1.8e-28 2 78 .] 97 173 .. 96 173 .. 0.98 Alignments for each domain: == domain 1 score: 98.1 bits; conditional E-value: 2.5e-32 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQ 69 +l+kkg++v+++hg+ +q +r++ l++f++g+++ l+at+va+rG+d+p+v++Vin+++p +v++y++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187286060 97 KLQKKGYNVTAIHGDKSQADRTAALQEFKSGTTPLLIATDVAARGLDIPQVEYVINYSFPLTVEDYVH 164 799***************************************************************** PP HHTTSSTTT CS Helicase_C 70 riGRtgRag 78 riGRtgR g Dinobryon-sp-UTEXLB2267_CAMPEP_0187286060 165 RIGRTGRGG 173 *******86 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 2e-07 0.0015 216 386 .. 9 162 .. 5 189 .. 0.73 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 2e-07 DUF1253 216 RQtiilssietpeinslfnsklaNlrgkvklkkkekkigvlekvvlkvrqvFerieaesilkeedarl 283 RQt+++s++ +ei+sl + + v++ + + + kv+q+ e s +++ + + Dinobryon-sp-UTEXLB2267_CAMPEP_0187286060 9 RQTVMFSATWPEEIRSLADKF--LKKDVVRVVVGGE----ELSANHKVKQIVEC---VSGFEKDRKLI 67 666666666666666666662..2233333333333....24455556665433...33333333332 PP DUF1253 284 kfFtknvlpkltkeskekgvlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkgrk 351 +l++++ +++++++lif+ + v +++ l+k+ ++ +ai+ s+++ + a + Fk+g + Dinobryon-sp-UTEXLB2267_CAMPEP_0187286060 68 -----GLLENYH-KGRKNRILIFVLYKKEAVDLQDKLQKKGYNVTAIHGDKSQADRTAALQEFKSGTT 129 .....3577777.8999*************************************************** PP DUF1253 352 kiLLvteRlhfyrRykikgvkkvifyslPefpefY 386 ++L+ t+ + r i +v+ vi ys P e Y Dinobryon-sp-UTEXLB2267_CAMPEP_0187286060 130 PLLIATDVAA--RGLDIPQVEYVINYSFPLTVEDY 162 ******9775..77888888888888888776655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (244 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 596 (0.0401861); expected 296.6 (0.02) Passed bias filter: 505 (0.0340503); expected 296.6 (0.02) Passed Vit filter: 33 (0.00222507); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.18u 0.41s 00:00:00.59 Elapsed: 00:00:01.06 # Mc/sec: 600.87 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 [L=856] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-46 156.1 0.2 2.3e-45 154.1 0.0 2.2 3 DEAD DEAD/DEAH box helicase 2.9e-24 84.7 0.5 6.8e-24 83.5 0.0 1.9 2 Helicase_C Helicase conserved C-terminal domain 4.3e-06 26.6 0.9 0.00011 22.0 0.0 3.1 3 ResIII Type III restriction enzyme, res subunit 0.0017 18.0 1.9 0.0036 17.0 0.1 2.4 2 AAA_19 Part of AAA domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.0 0.72 2.7e+03 85 115 .. 88 117 .. 79 134 .. 0.67 2 ! 154.1 0.0 6.3e-49 2.3e-45 1 169 [] 192 363 .. 192 363 .. 0.94 3 ? -3.2 0.0 1.3 5e+03 71 102 .. 445 479 .. 430 482 .. 0.63 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 0.72 HHHHHHHHTT.-SEEEEEHHHHHHHHHTTSS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 85 ardqlsvldngvdivvgTpgrlddlvstgkl 115 ar q dn v+i+v +r+ ++ ++k+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 88 ARSQPAESDN-VKIMVQETKRFERVLDKKKK 117 4444444455.88888888888888877554 PP == domain 2 score: 154.1 bits; conditional E-value: 6.3e-49 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT....EEEEEESSHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx....xxxxxxxxxxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq....kalivaPtreLaeqtlnn 63 tp+Q+++ipl++ g+d++++a TGsGKT+af++p++++ll k + ++liv+PtreLa q+ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 192 TPVQRKVIPLAMAGRDICASAVTGSGKTAAFALPILERLLYRpK-EipsiRVLIVTPTRELATQIGEV 258 79************************************998744.369******************** PP HHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSS.HCTTEEEEEEETHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF DEAD 64 lkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkl.nlsqvrllVlDEadr 130 + ++++ +++ +l+ gg++ + q+ l+n++d+vv Tpgr++d++++ ++ +l ++ +lVlDE+d+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 259 VGKLAQFTDITSCLVCGGKKDVKAQEAELRNRPDVVVCTPGRILDHLRNSHSvTLDDLDVLVLDEVDK 326 ********************888999999********************88868888*********** PP HHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 131 llsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkkl 169 ll++gf+++++q+++++ + ++q++++SAT++ +v++l Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 327 LLDMGFQEEVEQLVRHC--PLNRQTMLFSATMTPKVEDL 363 ****************7..558***********998875 PP == domain 3 score: -3.2 bits; conditional E-value: 1.3 SSCCEEEETTTSE..HHHHHHHHH.TT.-SEEEEE CS xxxxxxxxxxxxx..xxxxxxxxx.xxxxxxxxxx RF DEAD 71 pklrvlliiggva..lardqlsvl.dngvdivvgT 102 ++ v+ ++g+ + l++ l+++ +++vd++v+T Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 445 LGKTVCELHGDIPqpLRYAALQRFrEGQVDVMVAT 479 55577888887773333333333378999999998 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.5 0.0 1.8e-27 6.8e-24 7 78 .] 446 517 .. 440 517 .. 0.96 2 ? -4.0 0.1 3.7 1.4e+04 14 31 .. 629 646 .. 624 651 .. 0.73 Alignments for each domain: == domain 1 score: 83.5 bits; conditional E-value: 1.8e-27 TS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHHTTS CS Helicase_C 7 gikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRt 74 g v+ lhg++pq r + l++f++g+ +v+vat+va+rG+d+p+v++Vin ++pr+ ++y++r+GRt Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 446 GKTVCELHGDIPQPLRYAALQRFREGQVDVMVATDVAARGLDIPGVQTVINSEMPRNASTYVHRVGRT 513 6689**************************************************************** PP STTT CS Helicase_C 75 gRag 78 +Rag Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 514 ARAG 517 **97 PP == domain 2 score: -4.0 bits; conditional E-value: 3.7 STTSTHHHHHHHHHHHHT CS Helicase_C 14 hgelpqnereeileqfna 31 e++++er+e+ ++ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 629 ETETQKKERREVGREMVK 646 568999999998776655 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.7 0.1 0.57 2.1e+03 80 125 .. 87 130 .. 74 155 .. 0.48 2 ! 22.0 0.0 3.1e-08 0.00011 26 182 .. 206 358 .. 189 360 .. 0.76 3 ? 0.8 0.3 0.096 3.6e+02 110 150 .. 684 725 .. 613 761 .. 0.73 Alignments for each domain: == domain 1 score: -1.7 bits; conditional E-value: 0.57 GEEEESSS-B---SEEEEEHHHHH...................... CS ResIII 80 fekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhka 125 ++++++a+ ++ k + +e+k+++ + +kk+k+ + ++i + ++a Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 87 IARSQPAESDNVKIMVQETKRFE--RVLDKKKKKAVSAAIVTTTSA 130 44444443333333333333333..333334444444333333333 PP == domain 2 score: 22.0 bits; conditional E-value: 3.1e-08 SEEEEEESTTSTHHHHHHHHHHHH-S.........-EEEEESSHHHHHHHHHHGGGGTGG...GEEEE CS ResIII 26 krglivmaTGtGKTlvaasliarlar.........kflflvprkelleqaleefkkfeskkiefekkn 84 + ++ + TG+GKT a i++ + ++l++ p++el q e k ++ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 206 RDICASAVTGSGKTAAFALPILERLLyrpkeipsiRVLIVTPTRELATQIGEVVGKLAQFTDIT---- 269 568999*********9997555555558999*******************99993333322222.... PP SSS-B---SEEEEEHHHHH..................................HTHHHHTTT-SEEEE CS ResIII 85 iavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviii 152 + l+ +k++k +e + + ++++ t ++ l++ s+ ld dv++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 270 ------SCLVCGGKKDVKAQEAELRNRPDVVVCTPGRILDHLRN----------SHSVTLDDLDVLVL 321 ......22222333444455555567888999999999999885..........77888999****** PP ETGGGTTSTT.THHHHH.......---SEEEEEESS- CS ResIII 153 DEaHrlsakkkyreile.......fkkafllglTATp 182 DE+ +l ++ ++e+ + +++++l+ T Tp Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 322 DEVDKLLDMGFQEEVEQlvrhcplNRQTMLFSATMTP 358 *******999888888899999877777777777776 PP == domain 3 score: 0.8 bits; conditional E-value: 0.096 .............................HTHHHHTTT-SEE CS ResIII 110 kdkeiilttiqklhkaleeeeend.eskseslealldefdvi 150 +k++ l ++q+l+ + +e++++d ++ ++++++++ v+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 684 RKKRRRLEAMQELQDQDNENNKDDeNEDDGASRKKQKKHSVV 725 445555556666666666555555444433334444444444 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.1 9.6e-07 0.0036 7 62 .. 202 259 .. 197 282 .. 0.77 2 ? -1.7 0.1 0.63 2.3e+03 26 54 .. 505 532 .. 503 546 .. 0.80 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 9.6e-07 AAA_19 7 la.gnpllvvtGgPGtGKTttlaaiiaall..aarekpgrsvllvaptgraakrlserl 62 ++ g+ +++ ++ G+GKT++ a i ++l + +e p +vl+v+pt++ a ++ e++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 202 AMaGRDICA-SAVTGSGKTAAFALPILERLlyRPKEIPSIRVLIVTPTRELATQIGEVV 259 335899999.*********876666666555555555588***************9988 PP == domain 2 score: -1.7 bits; conditional E-value: 0.63 AAA_19 26 tlaaiiaallaarekpgrsvllvaptgra 54 t ++++ + ++a ++gr + lv+ +r Dinobryon-sp-UTEXLB2267_CAMPEP_0187267514 505 TYVHRVGRTARA-GCGGRAITLVSDARRK 532 778999999953.5559999999888775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (856 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1423 (0.0959477); expected 296.6 (0.02) Passed bias filter: 356 (0.0240038); expected 296.6 (0.02) Passed Vit filter: 37 (0.00249477); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.44u 0.36s 00:00:00.80 Elapsed: 00:00:00.75 # Mc/sec: 2979.26 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187298236 [L=841] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-42 144.3 0.7 6.1e-22 78.2 0.0 3.0 3 Ribonuclease_3 Ribonuclease III domain 9.2e-28 96.7 3.5 1.6e-10 41.0 0.3 3.5 3 Ribonucleas_3_3 Ribonuclease-III-like Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.9 0.0 1.2 8.5e+03 29 46 .. 304 321 .. 243 344 .. 0.67 2 ! 63.5 0.0 2.9e-21 2.2e-17 1 114 [] 464 561 .. 464 561 .. 0.87 3 ! 78.2 0.0 8.3e-26 6.1e-22 1 114 [] 679 817 .. 679 817 .. 0.79 Alignments for each domain: == domain 1 score: -2.9 bits; conditional E-value: 1.2 HHHHHHHHHHTSHHHHHH CS Ribonuclease_3 29 gklsklrsklvsnenlar 46 ++l+k +vsn++ a Dinobryon-sp-UTEXLB2267_CAMPEP_0187298236 304 NRLQKSDPTVVSNQTYAD 321 334444444444444443 PP == domain 2 score: 63.5 bits; conditional E-value: 2.9e-21 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTT.CHCHHBHHHHHHSTT CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklg.lpsylresefdppkn 67 er+e+LGD++lk++ ++ lf+ yp+ ++g l++ rs++vsn+nl+++a g +ylr Dinobryon-sp-UTEXLB2267_CAMPEP_0187298236 464 ERFEMLGDSFLKFISSQELFRAYPHRNQGFLTTVRSRIVSNDNLCQVALARGeVVQYLR------LLA 525 8*********************************************9997553677888......444 PP --TSSSSS.SC...............TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 68 wlplnkdlangkgrqsisydlkeqsiadkvladvvEAliGaiyldsg 114 w++ +s ++ +++ s++ k+ ad++E+l ++++l +g Dinobryon-sp-UTEXLB2267_CAMPEP_0187298236 526 WQE-----------RSDDQLHHQVSVKYKMVADAIESLTAVYFLAGG 561 444...........35555556*********************9876 PP == domain 3 score: 78.2 bits; conditional E-value: 8.3e-26 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBHHHHHHSTT- CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylresefdppknw 68 erLef+GDa+l+++++ +l++ +++l++g+ls+ +s +++nenlar+a ++gl++y+ +++ + + Dinobryon-sp-UTEXLB2267_CAMPEP_0187298236 679 ERLEFFGDAILDFCVVLQLYKGNEQLQQGELSNFKSLITRNENLARFATYIGLHKYISHNSLALGDVL 746 8*********************************************************8777776655 PP -T......SSSSS.SC................................................TSHH CS Ribonuclease_3 69 lp......lnkdlangk................................grqsisydlk.eqsiadkv 97 + + + + + + s + k+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187298236 747 EAiisetdE-----P-HhkpnpsiftsatfstscstssiscyyypialnK--------DyKFSHEVKF 800 556432221.....2.1357777888887777777766666554443330........2344568*** PP HHHHHHHHHHHHHHHTT CS Ribonuclease_3 98 ladvvEAliGaiyldsg 114 lad++EAli+aiy+dsg Dinobryon-sp-UTEXLB2267_CAMPEP_0187298236 801 LADAFEALIAAIYIDSG 817 ***************97 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.5 0.0 2.6e-13 1.9e-09 21 120 .. 462 569 .. 456 573 .. 0.83 2 ! 41.0 0.3 2.1e-14 1.6e-10 3 80 .. 662 737 .. 660 754 .. 0.85 3 ! 16.5 0.0 8e-07 0.0059 88 113 .. 793 818 .. 786 831 .. 0.84 Alignments for each domain: == domain 1 score: 37.5 bits; conditional E-value: 2.6e-13 Ribonucleas_3_3 21 yNerLefLGdavLelvvseyllekakk.degeltkklaslvseeslaeia.kelgLgkvlrl...... 80 + er+e+LGd+ L++++s+ l++ +++ ++g lt+ ++++vs+++l ++a + + ++lrl Dinobryon-sp-UTEXLB2267_CAMPEP_0187298236 462 NSERFEMLGDSFLKFISSQELFRAYPHrNQGFLTTVRSRIVSNDNLCQVAlARGEVVQYLRLlawqer 529 569*******************9976627899**************9999556678888888888987 PP Ribonucleas_3_3 81 rkgeeetessgrekvladaleAliGAiyldkGaeeakefv 120 ++++ +++ s + k++ada+e+l + +l +G+ + k+f+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187298236 530 SDDQLHHQVSVKYKMVADAIESLTAVYFLAGGVTAGKHFL 569 77777888888899*********97777777777766665 PP == domain 2 score: 41.0 bits; conditional E-value: 2.1e-14 Ribonucleas_3_3 3 elllqaltHkSyangrkgyNerLefLGdavLelvvseyllekakk.degeltkklaslvseeslaeia 69 ll++al H S + ++NerLef+Gda+L+++v+ l++ ++ ++gel++ ++ + ++e+la++a Dinobryon-sp-UTEXLB2267_CAMPEP_0187298236 662 RLLQEALSHASLH---SSSNERLEFFGDAILDFCVVLQLYKGNEQlQQGELSNFKSLITRNENLARFA 726 699********98...589*************99998888887662667777777668889******* PP Ribonucleas_3_3 70 kelgLgkvlrl 80 +gL k++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187298236 727 TYIGLHKYISH 737 ********975 PP == domain 3 score: 16.5 bits; conditional E-value: 8e-07 Ribonucleas_3_3 88 essgrekvladaleAliGAiyldkGa 113 + s++ k lada+eAli+Aiy+d+G Dinobryon-sp-UTEXLB2267_CAMPEP_0187298236 793 KFSHEVKFLADAFEALIAAIYIDSGD 818 56788999***************994 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (841 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 572 (0.0385679); expected 296.6 (0.02) Passed bias filter: 396 (0.0267008); expected 296.6 (0.02) Passed Vit filter: 22 (0.00148338); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.38u 0.32s 00:00:00.70 Elapsed: 00:00:00.59 # Mc/sec: 3720.83 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187266526 [L=446] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-35 122.2 0.2 2.4e-35 121.5 0.2 1.4 1 DEAD DEAD/DEAH box helicase 5.7e-23 80.5 0.0 1.5e-22 79.2 0.0 1.7 1 Helicase_C Helicase conserved C-terminal domain 6.3e-05 21.5 0.1 0.02 13.3 0.0 2.5 3 DUF1253 Protein of unknown function (DUF1253) 0.0044 16.8 0.0 0.0078 16.0 0.0 1.5 1 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.011 15.0 0.1 3.8 6.7 0.0 2.3 2 SecA_DEAD SecA DEAD-like domain 0.039 14.1 0.1 0.22 11.7 0.0 2.2 2 AAA ATPase family associated with various cellular ac Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 121.5 0.2 9.7e-39 2.4e-35 19 167 .. 1 174 [. 1 176 [. 0.92 Alignments for each domain: == domain 1 score: 121.5 bits; conditional E-value: 9.7e-39 EEESTTSSHHHHHHHHHHHHHHHTCTT........................EEEEEESSHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxx RF DEAD 19 vaaeTGsGKTlaflipviqilletkdq........................kalivaPtreLaeqtln 62 +aa TGsGKTla+++p++q+l+ ++q ++li++PtreLa+q+l+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187266526 1 MAASTGSGKTLAYVLPAVQNLAL-QEQlaknaadnseveveedgvrkmkrpRCLILVPTRELARQVLQ 67 79******************976.566789************************************** PP HHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 63 nlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEadr 130 +kq+++y k+ +++ gg + q++ l++ vd+vv+ pgrl+++ ++g+ +sqv+ +++DE+d+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187266526 68 AIKQVGHYSKVASCAVLGGEQYG-LQKRGLNRLVDVVVASPGRLMQHKEQGNVFFSQVNQVIIDEVDT 134 *********************77.999999999*****************9999************** PP HHSTTTHHHHHHHHHHSHHCT...TSEEEEEESS-THHHH CS xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx RF DEAD 131 llsqgfsdqlnqilqilcdgk...rlqvivlSATlpkdvk 167 +l qgf+++++ il+ + + ++q+++ +ATl+k v+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187266526 135 MLTQGFGSDIRAILRSVLTRSsdnPVQLVMATATLTKAVR 174 ************9998533333445**********98876 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.2 0.0 6e-26 1.5e-22 8 78 .] 295 365 .. 290 365 .. 0.97 Alignments for each domain: == domain 1 score: 79.2 bits; conditional E-value: 6e-26 S-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHHHTTSS CS Helicase_C 8 ikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQriGRtg 75 ++++ +hg+l+++ere+ le+ ++g+ ++v+t++a+rG+d+p++ +V++fd+p ++ +y++r+GR+g Dinobryon-sp-UTEXLB2267_CAMPEP_0187266526 295 VRAVSYHGDLNSREREANLEKLRSGEELFMVCTDIAARGLDIPEIGHVVMFDFPLNPIDYLHRAGRCG 362 78999*************************************************************** PP TTT CS Helicase_C 76 Rag 78 Rag Dinobryon-sp-UTEXLB2267_CAMPEP_0187266526 363 RAG 365 *97 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.3 0.0 8.1e-06 0.02 11 62 .. 25 74 .. 9 93 .. 0.68 2 ! 5.7 0.0 0.0016 3.8 133 178 .. 101 140 .. 98 180 .. 0.85 3 ? -3.0 0.0 0.7 1.7e+03 337 383 .. 307 351 .. 238 355 .. 0.58 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 8.1e-06 DUF1253 11 eklekeqeaekekveedeelrdqg...ftrpkvLillpfrniakevvdlliklle 62 e+l+k+++ +++ e+ ++g +rp+ Lil+p+r+ a +v + + ++ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187266526 25 EQLAKNAAD-----NSEVEVEEDGvrkMKRPRCLILVPTRELARQVLQAIKQVGH 74 333333333.....3444555554222689*****************99987655 PP == domain 2 score: 5.7 bits; conditional E-value: 0.0016 DUF1253 133 DiiiaSPLGlrliieeeekkkrdydflSSiEvlivdqadiilmQNw 178 D+++aSP l+ ++ k++ f S + +i+d++d +l Q + Dinobryon-sp-UTEXLB2267_CAMPEP_0187266526 101 DVVVASPGRLM---QH---KEQGNVFFSQVNQVIIDEVDTMLTQGF 140 89999996554...55...889999*****************9975 PP == domain 3 score: -3.0 bits; conditional E-value: 0.7 DUF1253 337 kkisrarklFkkgrkkiLLvteRlhfyrRykikgvkkvifyslPefp 383 ++ + + + +g++ ++++t+ + r i ++ +v+++ P +p Dinobryon-sp-UTEXLB2267_CAMPEP_0187266526 307 REREANLEKLRSGEELFMVCTDIAA--RGLDIPEIGHVVMFDFPLNP 351 4444444455555555555555443..55667778888888888776 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.0 3.2e-06 0.0078 32 74 .. 3 73 .. 1 135 [. 0.78 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 3.2e-06 ESTTSTHHHHHH.......HHHHHH-S.....................-EEEEESSHHHHHHHHHHGGGG CS ResIII 32 maTGtGKTlvaa.......sliarlar.....................kflflvprkelleqaleefkkf 73 + TG+GKTl + +l ++la+ ++l+lvp++el q l+++k+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187266526 3 ASTGSGKTLAYVlpavqnlALQEQLAKnaadnseveveedgvrkmkrpRCLILVPTRELARQVLQAIKQV 72 67*********988888773444444477778888899999999999*******************9444 PP T CS ResIII 74 e 74 Dinobryon-sp-UTEXLB2267_CAMPEP_0187266526 73 G 73 3 PP >> SecA_DEAD SecA DEAD-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 0.0 0.0023 5.7 98 118 .. 4 25 .. 1 34 [. 0.83 2 ? 6.7 0.0 0.0015 3.8 189 210 .. 114 136 .. 108 171 .. 0.85 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.0023 xxxxxxxxxxxxxxxxx.xxxx RF SecA_DEAD 98 kTGeGKtlvatlpavln.altg 118 +TG GKtl+ +lpav n al++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187266526 4 STGSGKTLAYVLPAVQNlALQE 25 6*************98746665 PP == domain 2 score: 6.7 bits; conditional E-value: 0.0015 xxxxxxx.xxxxxxxxxxxxxxx RF SecA_DEAD 189 skeekvq.relnyaivDEvDsvL 210 +++ +v ++n++i+DEvD +L Dinobryon-sp-UTEXLB2267_CAMPEP_0187266526 114 KEQGNVFfSQVNQVIIDEVDTML 136 44444433899**********99 PP >> AAA ATPase family associated with various cellular activities (AAA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 8.8e-05 0.22 61 120 .. 126 177 .. 92 186 .. 0.85 2 ? -1.5 0.0 1 2.5e+03 60 111 .. 221 275 .. 204 281 .. 0.58 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 8.8e-05 EEEEETGGGCCHHHSSCTTCHHHHHHHHHHHHHHCTTTTSSTEEEEEEESSGGGSGHHHH CS AAA 61 ilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpall 120 ++iDE+d + ++ +++++ + L ++l + ++ ++v +++at + k +all Dinobryon-sp-UTEXLB2267_CAMPEP_0187266526 126 QVIIDEVDTMLTQG------FGSDIRAILRSVLTRSSD--NPVQLVMATATLTKAVRALL 177 589********999......9***************99..58999999999888888887 PP == domain 2 score: -1.5 bits; conditional E-value: 1 EEEEEETGGGCCHHH.SSCTTCHHHHHHHHHHHHHHCTTTT..SSTEEEEEEESS CS AAA 60 silfiDEidalaksr.sgseseeeervvnqLlteldgvkkk..eskvivigatnr 111 +i+ +D +++ ++ ++ e++ +++ ++ L ++l + + +++ ++ +n+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187266526 221 KIVEVDGLHRSLPHVrHTVEETAGQDKLAVLQSVLARSLTAhgQGQQRTLIFCNT 275 5555555555555556556666666666666666665544444333455555555 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (446 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 363 (0.0244758); expected 296.6 (0.02) Passed bias filter: 291 (0.0196211); expected 296.6 (0.02) Passed Vit filter: 27 (0.00182051); expected 14.8 (0.001) Passed Fwd filter: 6 (0.000404558); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.26u 0.28s 00:00:00.54 Elapsed: 00:00:00.54 # Mc/sec: 2155.94 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187277642 [L=667] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-48 163.4 0.0 1.5e-47 161.2 0.0 1.9 2 DEAD DEAD/DEAH box helicase 4.6e-28 96.8 0.0 2e-27 94.8 0.0 2.1 2 Helicase_C Helicase conserved C-terminal domain 0.0075 16.1 0.0 0.013 15.3 0.0 1.3 1 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.011 14.2 0.0 0.058 11.7 0.0 2.0 1 DUF1253 Protein of unknown function (DUF1253) Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 161.2 0.0 4.1e-51 1.5e-47 1 169 [] 208 388 .. 208 388 .. 0.95 2 ? -0.4 0.0 0.18 6.8e+02 72 102 .. 460 493 .. 443 505 .. 0.74 Alignments for each domain: == domain 1 score: 161.2 bits; conditional E-value: 4.1e-51 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT...............EEEEEESS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq...............kalivaPt 53 tp+Q+ +ip l ggd++++a+TGsGKT+ fl pvi i+l + al++aPt Dinobryon-sp-UTEXLB2267_CAMPEP_0187277642 208 TPVQKYSIPIGLMGGDMMACAQTGSGKTAGFLFPVIAIMLAS--GplpepdnrrgkgayiTALVLAPT 273 79************************************9985..24579******************* PP HHHHHHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 54 reLaeqtlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvr 121 reLa q+++++++f+ +++r ++i+gg +++ +q++ l+ g+di+v+Tpgrl dl+++g+ +l vr Dinobryon-sp-UTEXLB2267_CAMPEP_0187277642 274 RELAIQIYEEANKFCYCTGIRPVVIYGGANMQ-QQQRELEIGADILVATPGRLADLIERGRVRLDIVR 340 ***************99*************99.788888788*****************999*999** PP EEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 122 llVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkkl 169 +lVlDEadr+l++gf++q+++i+q + ++q+ ++SAT+p++++kl Dinobryon-sp-UTEXLB2267_CAMPEP_0187277642 341 FLVLDEADRMLDMGFEPQIRRIVQEEGMPVERQTFMFSATFPSEIQKL 388 *************************888889***********999986 PP == domain 2 score: -0.4 bits; conditional E-value: 0.18 SCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 72 klrvlliiggvalardqlsvl....dngvdivvgT 102 ++ + i+g+++++ +++ l ++++ i+v+T Dinobryon-sp-UTEXLB2267_CAMPEP_0187277642 460 NFPASSIHGDKSQK-EREDALklfkSGRTPILVAT 493 55678899999855.3333334599999*****99 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.0 0.66 2.4e+03 6 23 .. 291 310 .. 286 314 .. 0.70 2 ! 94.8 0.0 5.3e-31 2e-27 3 78 .] 456 531 .. 454 531 .. 0.97 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.66 TTS-EEEEST..TSTHHHHH CS Helicase_C 6 kgikvailhg..elpqnere 23 gi+ ++++g +++q++re Dinobryon-sp-UTEXLB2267_CAMPEP_0187277642 291 TGIRPVVIYGgaNMQQQQRE 310 68899999996566666664 PP == domain 2 score: 94.8 bits; conditional E-value: 5.3e-31 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHH CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQr 70 l ++++++ +hg+ +q+ere+ l+ f++g++++lvat+va+rG+d+p+v+ Vinfdlp +v++y++r Dinobryon-sp-UTEXLB2267_CAMPEP_0187277642 456 LMRNNFPASSIHGDKSQKEREDALKLFKSGRTPILVATDVAARGLDIPNVTQVINFDLPSNVDDYVHR 523 678899************************************************************** PP HTTSSTTT CS Helicase_C 71 iGRtgRag 78 iGRtgR+g Dinobryon-sp-UTEXLB2267_CAMPEP_0187277642 524 IGRTGRVG 531 ******86 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.3 0.0 3.4e-06 0.013 32 183 .. 228 382 .. 223 383 .. 0.77 Alignments for each domain: == domain 1 score: 15.3 bits; conditional E-value: 3.4e-06 ESTTSTHHHHHH.......HHHHHH-S.................-EEEEESSHHHHHHHHHHGGGGTG CS ResIII 32 maTGtGKTlvaa.......sliarlar.................kflflvprkelleqaleefkkfes 75 + TG+GKT + +l+l+p++el q +ee + Dinobryon-sp-UTEXLB2267_CAMPEP_0187277642 228 AQTGSGKTAGFLfpviaimL------AsgplpepdnrrgkgayiTALVLAPTRELAIQIYEEA----N 285 67******988855443330......24667777777777**********************9....9 PP G...GEEEESSS-B---SEEEEEHHHHH..................................HTHHHH CS ResIII 76 kkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendesksesleal 143 k++ ++ ++v + +++++++q++++ ++i+++t +l +e+ + + Dinobryon-sp-UTEXLB2267_CAMPEP_0187277642 286 KFCYCTGIRPVVIYGGANMQQQQRELEI-------GADILVATPGRLADLIER-----------GRVR 335 9999999999999999888888888877.......889999999999999876...........3456 PP TTT-SEEEEETGGGTTSTT....THHHHH....---SEEEEEESS-S CS ResIII 144 ldefdviiiDEaHrlsakkk...yreile....fkkafllglTATpe 183 ld +++ DEa r+ ++ r+i++ + + ++AT++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187277642 336 LDIVRFLVLDEADRMLDMGFepqIRRIVQeegmPVERQTFMFSATFP 382 67777999999999988887666666666788834455688888875 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 1.6e-05 0.058 293 387 .. 430 521 .. 355 529 .. 0.80 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 1.6e-05 DUF1253 293 kltkeskekgvlifipsYfdyvrirnylkkekisFaaiseytsekkisrarklFkkgrkkiLLvteRl 360 lt + + vlif+ + ++++l ++++ +i+ s+k+ + a klFk+gr++iL+ t+ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187277642 430 FLT-RAPQGLVLIFVETKRGADLLEEVLMRNNFPASSIHGDKSQKEREDALKLFKSGRTPILVATDVA 496 344.44556688888888888889999**************************************988 PP DUF1253 361 hfyrRykikgvkkvifyslPefpefYs 387 r i +v++vi + lP++ + Y Dinobryon-sp-UTEXLB2267_CAMPEP_0187277642 497 A--RGLDIPNVTQVINFDLPSNVDDYV 521 6..899**************9987775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (667 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 458 (0.0308813); expected 296.6 (0.02) Passed bias filter: 354 (0.0238689); expected 296.6 (0.02) Passed Vit filter: 39 (0.00262963); expected 14.8 (0.001) Passed Fwd filter: 8 (0.000539411); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.35u 0.35s 00:00:00.70 Elapsed: 00:00:00.70 # Mc/sec: 2487.27 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187270764 [L=208] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-22 77.7 0.0 1.1e-21 77.1 0.0 1.3 1 Ribonucleas_3_3 Ribonuclease-III-like 8.6e-14 51.9 0.2 5.5e-13 49.3 0.1 2.2 2 Ribonuclease_3 Ribonuclease III domain 4.3e-09 36.8 0.0 6.7e-09 36.1 0.0 1.3 1 dsrm Double-stranded RNA binding motif ------ inclusion threshold ------ 0.011 16.0 1.0 0.046 13.9 0.7 1.9 1 DND1_DSRM double strand RNA binding domain from DEAD E 0.065 12.8 0.0 0.17 11.4 0.0 1.6 2 E2F_TDP E2F/DP family winged-helix DNA-binding domai Domain annotation for each model (and alignments): >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 77.1 0.0 3.7e-25 1.1e-21 1 124 [. 8 127 .. 8 131 .. 0.90 Alignments for each domain: == domain 1 score: 77.1 bits; conditional E-value: 3.7e-25 Ribonucleas_3_3 1 deelllqaltHkSy.angrkgyNerLefLGdavLelvvseyllek.akkdegeltkklaslvseesla 66 d+ell++al H S+ + +++ +rLefLGd+vL+lv++++l+ + ++++eg+lt++l+ l s +++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187270764 8 DPELLTKALLHPSHfSATPQSQFQRLEFLGDRVLNLVLADLLFASfPDEQEGSLTNRLSCLASADTCL 75 689**********934455899********************999456789999************** PP Ribonucleas_3_3 67 eiakelgLgkvlrlrkgeeetessgrekvladaleAliGAiyldkGaeeakefveeki 124 ++a++++L++++r s ++ + ad++e+l+GA+y+d+G+e +++fv++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187270764 76 QVASTIKLDNHVRG------VYDSPNTMMSADVIESLLGAMYIDGGFEPCRSFVTKYW 127 *************7......3467788899************************9875 PP >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.3 0.1 1.8e-16 5.5e-13 1 114 [] 31 115 .. 31 115 .. 0.92 2 ? -2.4 0.0 2.1 6.2e+03 82 82 .. 150 150 .. 123 185 .. 0.54 Alignments for each domain: == domain 1 score: 49.3 bits; conditional E-value: 1.8e-16 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTCHCHHBHHHHHHSTT- CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklglpsylresefdppknw 68 +rLefLGD vl+l++ + lf+ +pd +eg l++ s l s++++ ++a ++l++++r + Dinobryon-sp-UTEXLB2267_CAMPEP_0187270764 31 QRLEFLGDRVLNLVLADLLFASFPDEQEGSLTNRLSCLASADTCLQVASTIKLDNHVRG------VYD 92 7*********************************************************3......222 PP -TSSSSS.SC...............TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 69 lplnkdlangkgrqsisydlkeqsiadkvladvvEAliGaiyldsg 114 p ++ + adv+E+l+Ga+y+d+g Dinobryon-sp-UTEXLB2267_CAMPEP_0187270764 93 SP-----------------------NTMMSADVIESLLGAMYIDGG 115 22.......................4899***************87 PP == domain 2 score: -2.4 bits; conditional E-value: 2.1 . CS Ribonuclease_3 82 q 82 q Dinobryon-sp-UTEXLB2267_CAMPEP_0187270764 150 Q 150 1 PP >> dsrm Double-stranded RNA binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 36.1 0.0 2.3e-12 6.7e-09 1 65 [. 141 207 .. 141 208 .] 0.80 Alignments for each domain: == domain 1 score: 36.1 bits; conditional E-value: 2.3e-12 HHHHHHHHHHHTT.SCCEEEEEEEESSTSSSEEEEEEEEETTEEEE..EEEESSHHHHHHHHHHHHHH CS dsrm 1 pkskLqelcqkkg.kppnyeyvseegpphslkkFtvtvkvngklyg..tGvgssKKeAeqlAAekALq 65 +ks Lq + q k k+ +++ ++e+++p + F ++v + g+++ G+g+sKK+Aeq AA++AL Dinobryon-sp-UTEXLB2267_CAMPEP_0187270764 141 YKSILQMWLQSKEnKRHPTYAIEEKTGPEHDLHFNCSVSL-GEEFPlfFGTGNSKKAAEQMAAKAALD 207 79*****7776666777777777777777767********.44444469*****************95 PP >> DND1_DSRM double strand RNA binding domain from DEAD END PROTEIN 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.7 1.6e-05 0.046 10 42 .. 149 181 .. 142 207 .. 0.69 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.6e-05 DND1_DSRM 10 lCqknkwgsPvYelhseagpdgrllFlYkVvip 42 l +k + + P Y +++++gp++ l+F ++V + Dinobryon-sp-UTEXLB2267_CAMPEP_0187270764 149 LQSKENKRHPTYAIEEKTGPEHDLHFNCSVSLG 181 556777789*********************874 PP >> E2F_TDP E2F/DP family winged-helix DNA-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 5.8e-05 0.17 27 60 .. 74 104 .. 60 110 .. 0.86 2 ? -2.9 0.0 1.6 4.9e+03 19 34 .. 133 148 .. 122 158 .. 0.54 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 5.8e-05 E2F_TDP 27 lnevakeLvsedvknkrRRiYDilNVLealnlie 60 + +va+++ + n++R +YD N +++ ++ie Dinobryon-sp-UTEXLB2267_CAMPEP_0187270764 74 CLQVASTI---KLDNHVRGVYDSPNTMMSADVIE 104 44788889...8899*****************98 PP == domain 2 score: -2.9 bits; conditional E-value: 1.6 E2F_TDP 19 kseegivtlnevakeL 34 +s+++++ ++++ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187270764 133 QSNNEATLYKSILQMW 148 4444555555554443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (208 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 411 (0.0277122); expected 296.6 (0.02) Passed bias filter: 393 (0.0264986); expected 296.6 (0.02) Passed Vit filter: 29 (0.00195536); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.17u 0.28s 00:00:00.45 Elapsed: 00:00:00.52 # Mc/sec: 1044.13 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187264124 [L=1134] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-48 164.6 0.0 1.1e-47 162.7 0.0 2.0 2 PhyH Phytanoyl-CoA dioxygenase (PhyH) 3.5e-33 114.4 0.0 1.7e-32 112.2 0.0 2.1 2 DEAD DEAD/DEAH box helicase 6.8e-22 77.1 0.1 1.9e-21 75.6 0.1 1.9 1 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.046 13.5 0.0 0.16 11.8 0.0 1.9 1 ResIII Type III restriction enzyme, res subunit Domain annotation for each model (and alignments): >> PhyH Phytanoyl-CoA dioxygenase (PhyH) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.0 0.61 2.3e+03 28 60 .. 723 758 .. 635 806 .. 0.70 2 ! 162.7 0.0 3e-51 1.1e-47 1 211 [] 875 1115 .. 875 1115 .. 0.94 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 0.61 H....CHCTCTTTTSCEEEESCCCCGCCSGCCCCCCC CS PhyH 28 l....ldralesgdkidfffeekaaadedglleksin 60 ++++++s ++++ ++ + +a++++ + + + Dinobryon-sp-UTEXLB2267_CAMPEP_0187264124 723 AkqifTQSFVQSQSSKERMWLKQNADSAELEI-DEAT 758 24445677888888888888888888766665.4444 PP == domain 2 score: 162.7 bits; conditional E-value: 3e-51 HHHHSEEEETTSS-HHHHHHHHHHHHHH......................CHCTCTTTTSCEEEES CS PhyH 1 feedGylviegflsaeevealraeieal......................ldralesgdkidfffe 44 ++e+Gylvi +f ++e+v+++r+++ +l +d++l+sg +i+ f+e Dinobryon-sp-UTEXLB2267_CAMPEP_0187264124 875 YHENGYLVINNFWDDETVAKVRNQALELvnstdlksvtsvfstkenmrtaDDYFLNSGREIRYFWE 940 89**************************************************************** PP CCCCGCCSGCC.CCCCCEEECTTCH.......HHHHHHHHHHHHSCEEEE.EEEEEEE..EEE-TT CS PhyH 45 ekaaadedgll.eksinkvghflhp.......rkvadlvrailgqdvyva.avlqsmyqdifkqpk 101 eka+++ ++l ++ink+gh lh+ + ++v +i+++ + + qsmy ifkq++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187264124 941 EKANKE-HQLSpTEAINKIGHGLHDldpifesVSYEGRVGSICSELGLSKpLLAQSMY--IFKQAR 1003 *****9.55557*******************99999999999999999999779****..****** PP TC--EEEEB-GGGCSTEESCCGEEEEEEESS-B-TTBT-EEEETTGCCS--C.TTS.....TTTTS CS PhyH 102 iGgevqpwHqDstflptdpeesvvgvwialedateenGclrfiPGSHkweegplrrrlpeddteae 167 iGg v +HqD tfl+t+p +s+vg+w+ l+d+++ nGcl+++P SH+ +++ + rr++ +++ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187264124 1004 IGGYV-CPHQDGTFLYTEP-QSCVGFWWPLDDCSQRNGCLFAVPRSHLLGVHRRFRRRDLPNEG-T 1066 *****.************9.*****************************999544444444444.3 PP .....SSTT....GCCEEEE-B.TTEEEEEETTSEEEEX-B.SSS.EEE CS PhyH 168 .....ddeakkedeeeavpvevkaGdavlfhgrllHgsgaNrsdksRra 211 + ++++++ ++a+p+e +G++vl+h++l+H s +N+s+ R+a Dinobryon-sp-UTEXLB2267_CAMPEP_0187264124 1067 efvplESPDWSSELTSAIPLETPKGSLVLIHSALIHYSNENLSETARHA 1115 5**999999**************************************97 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 112.2 0.0 4.6e-36 1.7e-32 1 150 [. 186 366 .. 186 380 .. 0.90 2 ? -1.6 0.0 0.42 1.6e+03 146 166 .. 433 451 .. 411 453 .. 0.68 Alignments for each domain: == domain 1 score: 112.2 bits; conditional E-value: 4.6e-36 -HHHHHHHHHHHTT............CEEEEEESTTSSHHHHHHHHHHHHHHHTCTT..........E CS xxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........x RF DEAD 1 tpiQaeaiplilgg............gdvlvaaeTGsGKTlaflipviqilletkdq..........k 46 tpiQ++a+pl l g +d+++aaeTGsGKTlaf++p++q +l++ ++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187264124 186 TPIQTAALPLTLCGsfndnnndtlamNDIVGAAETGSGKTLAFVLPILQSILRNWTSlsgpshskcpH 253 79*********96669999*9999999*************************985457********** PP EEEEESSHHHHHHHHHHHHHHTTT....SSCCEEEETTTSEHHHHHHHHH..TT.-SEEEEEHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF DEAD 47 alivaPtreLaeqtlnnlkqfkky....pklrvlliiggvalardqlsvl..dngvdivvgTpgrldd 108 a+i+aPtreLa q+ + k++++ +++++ i+gg+a++ +q+++l + v++vv+Tpgrl + Dinobryon-sp-UTEXLB2267_CAMPEP_0187264124 254 AIIIAPTRELAMQITSVTKEICSVfrdaARIEIVTIVGGMAEQ-KQRRQLcgVRPVHVVVATPGRLCE 320 **********************999999999**********66.88889989778***********99 PP HHHT...TSS.HCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHC CS xxxx...xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 109 lvst...gkl.nlsqvrllVlDEadrllsqgfsdqlnqilqilcdg 150 l+ + +ls++r+lV+DEadr+ ++g +l+++ ++++d Dinobryon-sp-UTEXLB2267_CAMPEP_0187264124 321 LLLEedlIAFrDLSRLRFLVVDEADRIVEEGHFAELHRVFSRIRDH 366 998867745558899***************9999999999998876 PP == domain 2 score: -1.6 bits; conditional E-value: 0.42 HSHHCTTSEEEEEESS-THHH CS xxxxxxxxxxxxxxxxxxxxx RF DEAD 146 ilcdgkrlqvivlSATlpkdv 166 + + +q+++ SAT+ +++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187264124 433 SYRPL--RQTLLYSATAIQTL 451 33333..89*******98766 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.6 0.1 5.2e-25 1.9e-21 2 78 .] 586 662 .. 585 662 .. 0.98 Alignments for each domain: == domain 1 score: 75.6 bits; conditional E-value: 5.2e-25 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQ 69 ll++ gi++ lh++l+q++r++ le f+ vlvat+va+rG+d+ ++ V ++d+ rs++ yi+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187264124 586 LLRALGINCRSLHAQLQQKQRLAALEAFKGAPIGVLVATDVAARGLDISRIQSVLHYDIARSPQVYIH 653 68999*************************************************************** PP HHTTSSTTT CS Helicase_C 70 riGRtgRag 78 r+GRt+Ra+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187264124 654 RSGRTARAN 662 *******96 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.0 4.3e-05 0.16 31 157 .. 217 346 .. 205 365 .. 0.62 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 4.3e-05 EESTTSTHHHHHH....HHHHHH-S...............-EEEEESSHHHHHHHHHHGGGGTGG... CS ResIII 31 vmaTGtGKTlvaa....sliarlar...............kflflvprkelleqaleefkkfeskkie 79 +++TG+GKTl + i ++++++p++el q ++ ++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187264124 217 AAETGSGKTLAFVlpilQSI----LrnwtslsgpshskcpHAIIIAPTRELAMQITSVT----KEICS 276 578*******9995444334....33555999**********************98655....44444 PP GEEEESSS-B---SEEEEEHHHHH..................................HTHHHHTTT- CS ResIII 80 fekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldef 147 +++ + + g ++k + + + ++++t +l + l ee+ ++ + l + Dinobryon-sp-UTEXLB2267_CAMPEP_0187264124 277 VFRDAARIEIVTIVGGMAEQKQRR-QLCGVRPVHVVVATPGRLCELLLEEDLIA------FR-DLSRL 336 444444444444333333333333.33335555666666666666666554443......22.22234 PP SEEEEETGGG CS ResIII 148 dviiiDEaHr 157 ++++DEa r Dinobryon-sp-UTEXLB2267_CAMPEP_0187264124 337 RFLVVDEADR 346 4666666655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1134 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 506 (0.0341177); expected 296.6 (0.02) Passed bias filter: 237 (0.01598); expected 296.6 (0.02) Passed Vit filter: 16 (0.00107882); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.63 # Mc/sec: 4698.60 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 [L=537] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.4e-44 150.3 0.0 1.6e-43 148.1 0.0 2.0 2 DEAD DEAD/DEAH box helicase 2.6e-25 88.0 0.1 1.3e-24 85.8 0.0 2.2 2 Helicase_C Helicase conserved C-terminal domain 0.00044 20.1 0.1 0.0013 18.5 0.0 1.8 2 ResIII Type III restriction enzyme, res subunit 0.0036 17.0 0.1 0.017 14.8 0.0 2.2 2 AAA_19 Part of AAA domain ------ inclusion threshold ------ 0.017 15.2 0.0 0.028 14.5 0.0 1.5 1 His_Phos_1 Histidine phosphatase superfamily (branch 1) 0.018 15.1 0.1 0.18 11.9 0.0 2.7 2 AAA_22 AAA domain 0.034 13.3 0.0 0.056 12.6 0.0 1.4 1 PALP Pyridoxal-phosphate dependent enzyme Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 148.1 0.0 7.6e-47 1.6e-43 1 168 [. 45 212 .. 45 213 .. 0.94 2 ? -0.6 0.0 0.37 7.9e+02 45 62 .. 319 351 .. 249 392 .. 0.53 Alignments for each domain: == domain 1 score: 148.1 bits; conditional E-value: 7.6e-47 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT...EEEEEESSHHHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq...kalivaPtreLaeqtlnnlk 65 tpiQ+++ip+il+++dvl++aeTGsGKT+af++p++q l e +l+++PtreLa q+ +++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 45 TPIQQSCIPAILSQRDVLACAETGSGKTAAFALPILQLLSED--PfgiYCLVLTPTRELAIQINEQFV 110 89***********************************99885..3456******************** PP HHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSS.HCTTEEEEEEETHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF DEAD 66 qfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkl.nlsqvrllVlDEadrll 132 ++ ++r++l+ ggv + +q+ l++ ++ivv+Tpgr+ +++++ + nls+ r+lVlDEadrl+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 111 VLGASFGVRTCLVLGGVGMT-EQSLALEKLPHIVVATPGRMRHHLESASPpNLSRTRFLVLDEADRLM 177 ******************88.888899999*****************8889***************** PP STTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 133 sqgfsdqlnqilqilcdgkrlqvivlSATlpkdvkk 168 +gf ++l+ +l l+++ r++++++SATl++++++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 178 CSGFAEELHVVLTNLSHP-RRRTLLFSATLSSSMQQ 212 ***************999.889********987765 PP == domain 2 score: -0.6 bits; conditional E-value: 0.37 T...............EEEEEESSHHHHHHHHH CS x...............xxxxxxxxxxxxxxxxx RF DEAD 45 q...............kalivaPtreLaeqtln 62 +i + t ++qt+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 319 LrrkqkdetlrqlksySLIIFVSTCNRCQQTAA 351 033333333333333333444444444444444 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.6 0.0 1.1 2.4e+03 16 40 .. 318 342 .. 312 343 .. 0.84 2 ! 85.8 0.0 6.1e-28 1.3e-24 2 78 .] 352 428 .. 351 428 .. 0.98 Alignments for each domain: == domain 1 score: -1.6 bits; conditional E-value: 1.1 TSTHHHHHHHHHHHHTTSSSEEEES CS Helicase_C 16 elpqnereeileqfnagkskvlvat 40 l ++++e+l+q ++ + + v+t Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 318 ALRRKQKDETLRQLKSYSLIIFVST 342 5778999*******99988888877 PP == domain 2 score: 85.8 bits; conditional E-value: 6.1e-28 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQ 69 ll++ +i +++lh+ l+q er + l +f++ +vlvat+va+rG+d+p+v++Vinfdlp+ ++y++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 352 LLRQMNIDCVALHSVLSQAERVQALGKFKSRYARVLVATDVASRGLDIPAVDLVINFDLPKQCEDYVH 419 699***************************************************************** PP HHTTSSTTT CS Helicase_C 70 riGRtgRag 78 r+GRt+Rag Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 420 RVGRTARAG 428 *******97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.5 0.0 6.3e-07 0.0013 5 70 .. 45 109 .. 41 139 .. 0.88 2 ? -2.2 0.1 1.4 3.1e+03 96 129 .. 260 293 .. 223 338 .. 0.55 Alignments for each domain: == domain 1 score: 18.5 bits; conditional E-value: 6.3e-07 -HHHHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHH CS ResIII 5 rpyQeeaienllesiekedekkrglivmaTGtGKTlvaasliarlar......kflflvprkelleqa 66 p Q+ +i ++l +++ +l ++TG+GKT a i++l++ +l+l p++el q Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 45 TPIQQSCIPAIL-------SQRDVLACAETGSGKTAAFALPILQLLSedpfgiYCLVLTPTRELAIQI 105 566666666666.......367889999**************************************** PP HHHG CS ResIII 67 leef 70 e+f Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 106 NEQF 109 **99 PP == domain 2 score: -2.2 bits; conditional E-value: 1.4 EEEHHHHH.......................... CS ResIII 96 eeqkkskdkeekkkkdkeiilttiqklhkaleee 129 ++k++++++ ++++++ i t+ + +++e Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 260 LIEKDNASHDDSNQHVSGIGGTSSRQQRDQVNEI 293 4444444444444455555444444444444433 PP >> AAA_19 Part of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.0 8.1e-06 0.017 13 63 .. 62 111 .. 53 131 .. 0.83 2 ? -3.2 0.0 3.4 7.1e+03 28 49 .. 418 438 .. 418 439 .. 0.68 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 8.1e-06 AAA_19 13 lvvtGgPGtGKTttlaaiiaallaarekp.grsvllvaptgraakrlserl.l 63 l+ + G+GKT++ a i +ll e+p g +l+++pt++ a +++e + + Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 62 LA-CAETGSGKTAAFALPILQLL--SEDPfGIYCLVLTPTRELAIQINEQFvV 111 55.5778****************..88********************999862 PP == domain 2 score: -3.2 bits; conditional E-value: 3.4 AAA_19 28 aaiiaallaarekp.grsvllva 49 ++++ + + r+ + grs+ v+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 418 VHRVGRTA--RAGKgGRSISMVT 438 57777777..5566688887765 PP >> His_Phos_1 Histidine phosphatase superfamily (branch 1) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.5 0.0 1.3e-05 0.028 25 69 .. 315 357 .. 279 478 .. 0.83 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 1.3e-05 .BEHHHHHHHHHHHHHHHHTTCCCSEEEEESSHHHHHHHHHHHH.H CS His_Phos_1 25 pLtekGreqarelgkkLkradlpidavytSplkRaiqTaeille.e 69 +++ r+q +e+ ++Lk + +++S+ R++qTa++l++ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 315 SISALRRKQKDETLRQLK--SYSLI-IFVSTCNRCQQTAALLRQmN 357 478888999999999999..77777.***************98842 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.0 8.4e-05 0.18 7 102 .. 61 182 .. 55 206 .. 0.70 2 ? -1.0 0.0 0.85 1.8e+03 63 63 .. 262 262 .. 185 339 .. 0.57 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 8.4e-05 AAA_22 7 lvvtGesGvGKTtlarrlaeqldevaeaaekarvvfveapsstspkellkkllralglpakg...... 68 ++ ++e+G+GKT + +ql + + + +++ t +el+ ++ +++ + + Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 61 VLACAETGSGKTAAFALPILQLL-------SEDPFGIYCLVLTPTRELAIQINEQFVVLGASfgvrtc 121 567999*******9999999987.......55555666666666699999999999988888999999 PP AAA_22 69 ..................rltteelleallralrrrrv.............glliiDEaqhLr.s..e 102 ++ + +++ + ++l++DEa++L s + Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 122 lvlggvgmteqslaleklPHIVVATPGRMR-------HhlesasppnlsrtRFLVLDEADRLMcSgfA 182 999999777665554443222222223444.......144445558888999*********9774342 PP == domain 2 score: -1.0 bits; conditional E-value: 0.85 AAA_22 63 g 63 + Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 262 E 262 3 PP >> PALP Pyridoxal-phosphate dependent enzyme # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 2.7e-05 0.056 34 100 .. 305 378 .. 277 472 .. 0.82 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 2.7e-05 STTSBTCHHHHHHHHHHHHHC.......TTSEEEEE-SSHHHHHHHHHHHHCT-EEEEEEETTS-CHH CS PALP 34 nptgSfKdRgaanavlralak.......ggkgvveassGNhGaalAlaaallglkctivvpkdtppek 94 +gS+K R++ +a++r+ ++ + ++ s+ N ++ +A+ ++++++c+ + +e+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 305 KSGGSNKKRKSISALRRKQKDetlrqlkSYSLIIFVSTCNRCQQTAALLRQMNIDCVALHSVLSQAER 372 5689*************6444777777666777***********************999887666666 PP HHHHHH CS PALP 95 ialira 100 ++++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187275402 373 VQALGK 378 655544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (537 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 770 (0.0519183); expected 296.6 (0.02) Passed bias filter: 484 (0.0326343); expected 296.6 (0.02) Passed Vit filter: 46 (0.00310161); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.30u 0.27s 00:00:00.57 Elapsed: 00:00:00.51 # Mc/sec: 2748.53 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 [L=608] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.9e-42 144.0 0.2 2.5e-41 140.9 0.0 2.2 2 DEAD DEAD/DEAH box helicase 1e-27 95.7 0.2 1e-24 86.1 0.1 2.6 2 Helicase_C Helicase conserved C-terminal domain 1.9e-07 31.1 0.0 5.6e-07 29.5 0.0 1.8 1 ResIII Type III restriction enzyme, res subunit 0.007 15.0 0.1 0.018 13.6 0.0 1.6 1 T4SS-DNA_transf Type IV secretory system Conjugative DNA tra ------ inclusion threshold ------ 0.021 14.7 0.0 0.098 12.6 0.0 2.1 3 Helicase_C_2 Helicase C-terminal domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 140.9 0.0 8.5e-45 2.5e-41 1 165 [. 87 264 .. 87 268 .. 0.93 2 ? 0.5 0.0 0.12 3.7e+02 60 102 .. 418 463 .. 415 478 .. 0.84 Alignments for each domain: == domain 1 score: 140.9 bits; conditional E-value: 8.5e-45 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT..........EEEEEESSHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx..........xxxxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq..........kalivaPtreLa 57 t +Q++++p+il+g ++l+ a+TGsGKTl f++p+i ++ ++ k+ +li++PtreLa Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 87 TTVQKQCWPAILSGANILAIAPTGSGKTLGFVMPMIVHINSHiKSAtykprkkiepICLILEPTRELA 154 689************************************9998877********************** PP HHHHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH...TT.-SEEEEEHHHHHHHHHTTSS..HCTTE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx..xxxxx RF DEAD 58 eqtlnnlkqfkkypklrvlliiggvalardqlsvl...dngvdivvgTpgrlddlvstgkl..nlsqv 120 q+++ lk++k + ++ ++i+gg++++ dql ++ ++ +i+v+Tpgrl+d ++++k +ls+v Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 155 IQVASVLKNLKRHCNILSAAIYGGQDKE-DQLDNMqskKKDLHILVATPGRLIDYLHNDKAaiSLSKV 221 *************9999*********77.999999999889*****************555469999* PP EEEEEETHHHHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 121 rllVlDEadrllsqgfsdqlnqilqilcdgkrlqvivlSATlpkd 165 ++V+DEadr+l +gf +q++ i ++++ ++q++++SAT+p + Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 222 TYFVVDEADRMLAMGFHEQIECISRQIRP--DRQTLLFSATFPGK 264 **************************944..59*********954 PP == domain 2 score: 0.5 bits; conditional E-value: 0.12 HHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 60 tlnnlkqfkkypklrvlliiggvalardqlsvl....dngvdivvgT 102 tl+ +k+f+ +++ l++g+ +++ +++s l ++v+i+ +T Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 418 TLKFVKDFLTRQNVVSELLHGQLPQS-RRESILntfkAGKVNILLAT 463 6778899999999999999**99977.66667779999999999998 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.1 0.0 0.0016 4.8 2 40 .. 164 201 .. 163 203 .. 0.89 2 ! 86.1 0.1 3.5e-28 1e-24 2 78 .] 425 501 .. 424 501 .. 0.97 Alignments for each domain: == domain 1 score: 7.1 bits; conditional E-value: 0.0016 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvat 40 l+++++i +a+++g+ ++++++ +++ ++ + ++lvat Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 164 LKRHCNILSAAIYGGQDKEDQLDNMQSKKK-DLHILVAT 201 57899********************99887.66899999 PP == domain 2 score: 86.1 bits; conditional E-value: 3.5e-28 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQ 69 +l+++++ + lhg+lpq+ re il+ f+agk ++l+at+va+rGi ++ +++V+n+d+p + ++y + Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 425 FLTRQNVVSELLHGQLPQSRRESILNTFKAGKVNILLATDVAARGIHIKRLQYVVNYDFPSNIEQYCH 492 7889999999********************************************************** PP HHTTSSTTT CS Helicase_C 70 riGRtgRag 78 r+GRtgR g Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 493 RVGRTGRQG 501 *******76 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.5 0.0 1.9e-10 5.6e-07 25 183 .. 100 262 .. 77 263 .. 0.77 Alignments for each domain: == domain 1 score: 29.5 bits; conditional E-value: 1.9e-10 TSEEEEEESTTSTHHHHHH.........HHHHHH-S...........-EEEEESSHHHHHHHHHHGGG CS ResIII 25 kkrglivmaTGtGKTlvaa.........sliarlar...........kflflvprkelleqaleefkk 72 +++l ++TG+GKTl + + + +l+l p++el q +k+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 100 GANILAIAPTGSGKTLGFVmpmivhinsH----IKSatykprkkiepICLILEPTRELAIQVASVLKN 163 478999*********97776666644442....222555688899999***************99944 PP GTGG...GEEEESSS-B---SEEEEEHHHHH..................................HTH CS ResIII 73 feskkiefekkniavakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendesksesl 140 + +++ + + g+ +++ d+ ++kkkd i+++t +l l++ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 164 LKRH-CNI-------LSAAIYGGQDKEDQLDNMQSKKKDLHILVATPGRLIDYLHN---------DKA 214 4444.333.......233345666777777778889999**************998.........556 PP HHHTTT-SEEEEETGGGTTSTT.THHHHH.....---SEEEEEESS-S CS ResIII 141 ealldefdviiiDEaHrlsakkkyreile.....fkkafllglTATpe 183 +l + ++++DEa r+ a+ +++i + + l ++AT++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 215 AISLSKVTYFVVDEADRMLAMGFHEQIECisrqiRPDRQTLLFSATFP 262 77888999**************877775577888788888******85 PP >> T4SS-DNA_transf Type IV secretory system Conjugative DNA transfer # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.6 0.0 6.2e-06 0.018 46 68 .. 102 124 .. 81 129 .. 0.83 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 6.2e-06 T4SS-DNA_transf 46 hvlvvAptrsgKgvgvviPnllk 68 +l +Apt+sgK+ g+v+P + Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 102 NILAIAPTGSGKTLGFVMPMIVH 124 4889***************7765 PP >> Helicase_C_2 Helicase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.6 0.0 3.2 9.4e+03 122 137 .. 29 44 .. 26 45 .. 0.87 2 ? -3.3 0.0 2.4 7.2e+03 53 76 .. 246 270 .. 213 280 .. 0.67 3 ? 12.6 0.0 3.3e-05 0.098 8 78 .. 405 473 .. 401 506 .. 0.85 Alignments for each domain: == domain 1 score: -3.6 bits; conditional E-value: 3.2 Helicase_C_2 122 qalravnQaiGRviRh 137 q l++++Q iG v+R+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 29 QGLKKLRQDIGVVVRS 44 67899******99996 PP == domain 2 score: -3.3 bits; conditional E-value: 2.4 Helicase_C_2 53 eeykeskgaillavcr.gkvseGid 76 ++++ +++ +l++ gk+ e id Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 246 RQIRPDRQTLLFSATFpGKLRETID 270 4444456666664433388888887 PP == domain 3 score: 12.6 bits; conditional E-value: 3.3e-05 Helicase_C_2 8 vpggvlvffpSyslleevverlkeeleskkievfeekeesrekvleeykeskgaillavcrgkvseGi 75 pg +lvf++ ++l+ v ++l+++ ++++ + ++ re++l+++k++k illa+ Gi Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 405 QPGAMLVFCNKIKTLKFVKDFLTRQNVVSELLHGQLPQSRRESILNTFKAGKVNILLATD--VAARGI 470 6899*******************9986555554444799*******************98..667777 PP Helicase_C_2 76 dfs 78 ++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187276110 471 HIK 473 665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (608 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 811 (0.0546828); expected 296.6 (0.02) Passed bias filter: 325 (0.0219136); expected 296.6 (0.02) Passed Vit filter: 28 (0.00188794); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.30u 0.25s 00:00:00.55 Elapsed: 00:00:00.53 # Mc/sec: 2994.49 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187294302 [L=534] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3e-22 78.8 0.1 3.1e-14 52.8 0.0 2.7 3 DEAD DEAD/DEAH box helicase 9.5e-21 73.4 0.0 1.7e-20 72.6 0.0 1.4 1 Helicase_C Helicase conserved C-terminal domain 0.0012 19.0 0.0 0.81 9.8 0.0 2.7 2 AAA_22 AAA domain 0.0055 16.0 0.1 4.2 6.8 0.0 2.4 2 Antimicrobial19 Pseudin antimicrobial peptide Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.8 0.0 8.3e-18 3.1e-14 45 134 .. 72 159 .. 53 172 .. 0.82 2 ! 23.5 0.0 8.3e-09 3.1e-05 118 168 .. 172 227 .. 160 228 .. 0.74 3 ? -3.4 0.1 1.5 5.5e+03 114 133 .. 266 286 .. 252 312 .. 0.67 Alignments for each domain: == domain 1 score: 52.8 bits; conditional E-value: 8.3e-18 TEEEEEESSHHHHHHHHHHHHHHTTT...SSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 45 qkalivaPtreLaeqtlnnlkqfkky...pklrvlliiggvalardqlsvldngvdivvgTpgrlddl 109 a+iv+Pt e+a+qt++ + +++ + p + v l+ +g+ + ++ ++n vdi+v+T g+l++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187294302 72 PLAVIVEPTVEMAKQTFDCIADLCRKlpqPTIHVQLLGSGKR-S--RDA-VEN-VDILVATMGKLQHA 134 479*********************999988889998855444.3..332.345.************** PP HHTTSSHCTTEEEEEEETHHHHHST CS xxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 110 vstgklnlsqvrllVlDEadrllsq 134 +g+ +lsqvrl++lDEad+l s+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187294302 135 ATSGEVSLSQVRLFILDEADKLISN 159 **********************995 PP == domain 2 score: 23.5 bits; conditional E-value: 8.3e-09 TTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCT.....TSEEEEEESS-T.HHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxx.xxxxx RF DEAD 118 sqvrllVlDEadrllsqgfsdqlnqilqilcdgk.....rlqvivlSATlp.kdvkk 168 + vrl++lDEad+l s+ + ++ ++ g rlqv+++SATl+ ++k+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187294302 172 LAVRLFILDEADKLISNHSMGSILELFALC-PGGgtgqhRLQVCFFSATLHsPQIKD 227 459*************75555666666553.333567667***********888876 PP == domain 3 score: -3.4 bits; conditional E-value: 1.5 SSHCTTEEE.EEEETHHHHHS CS xxxxxxxxx.xxxxxxxxxxx RF DEAD 114 klnlsqvrl.lVlDEadrlls 133 ++ v+l V DE++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187294302 266 DVDTTTVKLeTVTDEVHPHDV 286 445566676678899887665 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 72.6 0.0 4.5e-24 1.7e-20 5 78 .] 348 423 .. 344 423 .. 0.95 Alignments for each domain: == domain 1 score: 72.6 bits; conditional E-value: 4.5e-24 HTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSS..SSSHHHHHHH CS Helicase_C 5 kkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdl..prsvtsyiQr 70 k++++++l g + +r++ le+f++ + +l++t+va+rGid+p+v +V+n+ l ++v++yi+r Dinobryon-sp-UTEXLB2267_CAMPEP_0187294302 348 SKKYSCCVLAGMRTVPQRTAALEKFKSCEVEILICTDVAARGIDIPGVPYVVNMTLpdETNVEDYIHR 415 678*****************************************************77789999**** PP HTTSSTTT CS Helicase_C 71 iGRtgRag 78 +GR+gRag Dinobryon-sp-UTEXLB2267_CAMPEP_0187294302 416 VGRVGRAG 423 ******97 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.8 0.0 0.00022 0.81 37 109 .. 71 170 .. 53 173 .. 0.59 2 ! 8.7 0.0 0.00047 1.8 77 118 .. 163 212 .. 158 219 .. 0.67 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.00022 AAA_22 37 karvvfveapsstspkel..lkkllralglpakg................rltteelleallralrrr 86 ++ +v ve + ++ ++++ ++l+r+l +p+ + + + + +l++a+++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187294302 71 DPLAVIVEPTVEMAKQTFdcIADLCRKLPQPTIHvqllgsgkrsrdavenVDILVATMGKLQHAATSG 138 55555666666664444444667777777777777777775555444332111122234555555555 PP AAA_22 87 rv.....glliiDEaqhLr...s.eelleelr 109 +v +l+i+DEa++L+ s + le + Dinobryon-sp-UTEXLB2267_CAMPEP_0187294302 139 EVslsqvRLFILDEADKLIsnhSmGSILELFA 170 5599999**********986433556666555 PP == domain 2 score: 8.7 bits; conditional E-value: 0.00047 AAA_22 77 eallralrrrrvglliiDEaqhLr...s.eelleelrdlld....etgvk 118 +l+ ++ +v+l+i+DEa++L+ s + le + + ++ ++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187294302 163 GSILELFASLAVRLFILDEADKLIsnhSmGSILELFALCPGggtgQHRLQ 212 567888899999**********9864334555555544433555555555 PP >> Antimicrobial19 Pseudin antimicrobial peptide # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 6.8 0.0 0.0011 4.2 12 22 .. 150 160 .. 150 161 .. 0.87 2 ! 6.8 0.0 0.0011 4.2 12 22 .. 179 189 .. 179 190 .. 0.87 Alignments for each domain: == domain 1 score: 6.8 bits; conditional E-value: 0.0011 Antimicrobial19 12 LHEvIKLvsNH 22 L E+ KL+sNH Dinobryon-sp-UTEXLB2267_CAMPEP_0187294302 150 LDEADKLISNH 160 56999****** PP == domain 2 score: 6.8 bits; conditional E-value: 0.0011 Antimicrobial19 12 LHEvIKLvsNH 22 L E+ KL+sNH Dinobryon-sp-UTEXLB2267_CAMPEP_0187294302 179 LDEADKLISNH 189 56999****** PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (534 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 453 (0.0305441); expected 296.6 (0.02) Passed bias filter: 358 (0.0241386); expected 296.6 (0.02) Passed Vit filter: 41 (0.00276448); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.29u 0.28s 00:00:00.57 Elapsed: 00:00:00.60 # Mc/sec: 2323.20 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187269036 [L=959] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-44 150.1 0.1 4.7e-43 146.6 0.0 2.1 2 DEAD DEAD/DEAH box helicase 1e-24 86.1 0.2 2e-24 85.2 0.1 1.5 1 Helicase_C Helicase conserved C-terminal domain 0.00057 18.4 0.2 0.92 7.8 0.0 3.2 2 DUF1253 Protein of unknown function (DUF1253) 0.0011 18.9 0.0 0.0021 18.0 0.0 1.4 1 Helicase_C_2 Helicase C-terminal domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 146.6 0.0 1.3e-46 4.7e-43 1 167 [. 147 389 .. 147 391 .. 0.95 2 ? 1.1 0.0 0.065 2.4e+02 70 102 .. 459 498 .. 430 506 .. 0.74 Alignments for each domain: == domain 1 score: 146.6 bits; conditional E-value: 1.3e-46 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT....................... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................... RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq....................... 45 tpiQ++aipl l g d++++a+TGsGKT afl+p++ + + +++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187269036 147 TPIQKHAIPLGLAGVDLMCCAQTGSGKTFAFLLPLVASIDRMNREmashmtsvtvnttngssnsnssn 214 89*************************************8874447********************** PP ....................................................EEEEEESSHHHHHHHH CS ....................................................xxxxxxxxxxxxxxxx RF DEAD 46 ....................................................kalivaPtreLaeqtl 61 + +i+aPtreLa q++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187269036 215 ntsgtdavdgeseeppvptsttaastttasvlvdddgylvnrvmisdkgvlpRSIILAPTRELAIQIH 282 ******************************************************************** PP HHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 62 nnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEad 129 + ++++ l++++++gg++ + ql+ l+ g di+v+Tpgrl dlv +g +lsqv++lVlDEad Dinobryon-sp-UTEXLB2267_CAMPEP_0187269036 283 LDTRRLIYSSPLKAVCVYGGNDVK-IQLNELSYGSDIIVATPGRLNDLVDRGVVSLSQVNFLVLDEAD 349 *******9999***********88.9*****999*****************999************** PP HHHSTTTHHHHHHHHHHSHHCTT..SEEEEEESS-THHHH CS xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx RF DEAD 130 rllsqgfsdqlnqilqilcdgkr..lqvivlSATlpkdvk 167 r+l++gf++q+++i+ + +++ +q++++SAT+p+ ++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187269036 350 RMLDMGFEPQIRRIVLENDMPSKefRQTLLFSATFPTAIQ 389 *************99886555545699********97766 PP == domain 2 score: 1.1 bits; conditional E-value: 0.065 T....SSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS x....xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 70 y....pklrvlliiggvalardqlsvl....dngvdivvgT 102 y ++ + i+g+ ++ ++++ l d++v+i+++T Dinobryon-sp-UTEXLB2267_CAMPEP_0187269036 459 YlnkqYRIAAEEIHGDRTQT-QRENALkqfrDGHVRILIAT 498 33334677888999998855.55555567899*******99 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.2 0.1 5.5e-28 2e-24 4 78 .] 462 539 .. 459 539 .. 0.95 Alignments for each domain: == domain 1 score: 85.2 bits; conditional E-value: 5.5e-28 HHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHH...HH CS Helicase_C 4 ekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvts...yi 68 +++ i + +hg+ +q +re l+qf++g ++l+at+va+rG+d+p+v++Vi+fdlp s ++ y+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187269036 462 KQYRIAAEEIHGDRTQTQRENALKQFRDGHVRILIATDVAARGLDVPAVTHVIQFDLPLSSEDfdvYV 529 678899999************************************************999988888** PP HHHTTSSTTT CS Helicase_C 69 QriGRtgRag 78 +riGRtgRag Dinobryon-sp-UTEXLB2267_CAMPEP_0187269036 530 HRIGRTGRAG 539 ********97 PP >> DUF1253 Protein of unknown function (DUF1253) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.5 0.0 0.0024 9 122 173 .. 306 351 .. 301 357 .. 0.87 2 ! 7.8 0.0 0.00025 0.92 212 380 .. 371 519 .. 357 535 .. 0.65 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.0024 DUF1253 122 kiklyskfyssDiiiaSPLGlrliieeeekkkrdydflSSiEvlivdqadii 173 ki+l + y sDii+a P l+ ++++ + lS + l++d+ad + Dinobryon-sp-UTEXLB2267_CAMPEP_0187269036 306 KIQLNELSYGSDIIVATPGRLNDLVDR------GVVSLSQVNFLVLDEADRM 351 78999999*************999985......8889999999999999876 PP == domain 2 score: 7.8 bits; conditional E-value: 0.00025 DUF1253 212 aknyRQtiilssietpeinslfnsklaNlrgkvklkkkekkigvlekvvlkvrqvFerieaesilkee 279 +k++RQt+++s++ + i++l ++ +++ g + ++v++++q + +a+ +k Dinobryon-sp-UTEXLB2267_CAMPEP_0187269036 371 SKEFRQTLLFSATFPTAIQTLAKE-------FLRDYVWIG-VGRVGSTVCNIQQQVLQCSADPYEKM- 429 466666666666666666666665.......222222222.23444555555555444333322222. PP DUF1253 280 darlkfFtknvlpkltkeskekgvlifipsYfdyvrirnylk.kekisFaaiseytsekkisrarklF 346 ++l + e+++ ++l+f+ + + +yl+ + +i ++i+ ++++ ++a k+F Dinobryon-sp-UTEXLB2267_CAMPEP_0187269036 430 ---------QLLLQCL-EQTNGRTLVFVQKKRTATWLCDYLNkQYRIAAEEIHGDRTQTQRENALKQF 487 .........2233333.467799999999999999999999956688899999999999999999999 PP DUF1253 347 kkgrkkiLLvteRlhfyrRykikgvkkvifyslP 380 +g+ +iL+ t+ + r + v++vi + lP Dinobryon-sp-UTEXLB2267_CAMPEP_0187269036 488 RDGHVRILIATDVAA--RGLDVPAVTHVIQFDLP 519 999999999998654..55666666666666666 PP >> Helicase_C_2 Helicase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 5.8e-07 0.0021 1 93 [. 432 521 .. 432 531 .. 0.87 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 5.8e-07 Helicase_C_2 1 llellkvvpggvlvffpSyslleevverlkeeleskkievfee.keesrekvleeykeskgaillavc 67 ll++l++++g++lvf++ ++ + ++++l++++ e+ ++ +re+ l+++++++ il+a+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187269036 432 LLQCLEQTNGRTLVFVQKKRTATWLCDYLNKQYRIAAEEIHGDrTQTQRENALKQFRDGHVRILIATD 499 67899**************************9965555665554588********************9 PP Helicase_C_2 68 rgkvseGidfsddllraviivglPfp 93 G+d++ +++ vi + lP+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187269036 500 --VAARGLDVP--AVTHVIQFDLPLS 521 ..999****99..7888888888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (959 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 706 (0.047603); expected 296.6 (0.02) Passed bias filter: 304 (0.0204976); expected 296.6 (0.02) Passed Vit filter: 26 (0.00175308); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.64 # Mc/sec: 3911.42 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187294782 [L=629] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-35 120.0 0.3 3.6e-34 117.6 0.2 2.0 2 DEAD DEAD/DEAH box helicase 2.1e-23 81.9 0.0 5.6e-22 77.4 0.0 2.7 2 Helicase_C Helicase conserved C-terminal domain 0.0025 17.6 0.0 0.0025 17.6 0.0 3.4 4 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.74 10.1 11.2 2.3 8.5 1.9 2.6 2 PBP1_TM Transmembrane domain of transglycosylase PBP1 Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 117.6 0.2 9.8e-38 3.6e-34 1 160 [. 180 345 .. 180 355 .. 0.89 2 ? -0.8 0.0 0.24 8.8e+02 72 103 .. 520 554 .. 507 559 .. 0.76 Alignments for each domain: == domain 1 score: 117.6 bits; conditional E-value: 9.8e-38 -HHHHHHHHHHH.TTCE...EEEEESTTSSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHHH CS xxxxxxxxxxxx.xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF DEAD 1 tpiQaeaiplil.gggd...vlvaaeTGsGKTlaflipviqillet.kdqkalivaPtreLaeqtlnn 63 t+iQ+ a+p ++ +++d v+++a+TGsGKTla+l+p++qi+ ++ +a+i+aP+reL++q+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187294782 180 TKIQSIALPVMMsKDDDrveVVMQAQTGSGKTLAYLLPLLQIVNPDiNKVQAVIIAPSRELVQQIGIV 247 78*********95444444589*********************9999999****************** PP HHHHTTTSSCCEEEETTTSEHHHHHHHHH.TT.-SEEEEEHHHHHHHHHTTSS.HCTTEEEEEEETHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF DEAD 64 lkqfkkypklrvlliiggvalardqlsvl.dngvdivvgTpgrlddlvstgkl.nlsqvrllVlDEad 129 +q++ + k r++ +iggv+ + +q ++l dn+++i+v+Tpgrl +l+ + ++ +l +r +++DE+d Dinobryon-sp-UTEXLB2267_CAMPEP_0187294782 248 GNQLFMNSKYRIVSLIGGVNVQ-NQIKQLrDNKPQILVATPGRLAELLFKLEKvRLGMLRAFIVDEID 314 ********************88.8888889********************65548888********** PP HHHSTTTHHHHHHHHHHSHHCTTSEEEEEES CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 130 rllsqgfsdqlnqilqilcdgkrlqvivlSA 160 +++++ f ++l+++++++ ++ + + +S Dinobryon-sp-UTEXLB2267_CAMPEP_0187294782 315 NMMKEPFMEELQTVMEATPLFAQNRRLSFSS 345 ****************997776666666664 PP == domain 2 score: -0.8 bits; conditional E-value: 0.24 SCCEEEETTTSEHHHHHHHHH....TT.-SEEEEEH CS xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx RF DEAD 72 klrvlliiggvalardqlsvl....dngvdivvgTp 103 ++ ++ ++g+++++ d+++ l +++ ivv+T Dinobryon-sp-UTEXLB2267_CAMPEP_0187294782 520 GFVAAPLHGDSSKD-DRKEILarlrSGRLGIVVTTE 554 56677889999966.77777778899999****995 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.6 0.0 0.067 2.5e+02 7 40 .. 256 286 .. 250 288 .. 0.69 2 ! 77.4 0.0 1.5e-25 5.6e-22 2 78 .] 515 591 .. 514 591 .. 0.97 Alignments for each domain: == domain 1 score: 1.6 bits; conditional E-value: 0.067 TS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS Helicase_C 7 gikvailhgelpqnereeileqfnagkskvlvat 40 +++++ l g+ + + ++q +++k ++lvat Dinobryon-sp-UTEXLB2267_CAMPEP_0187294782 256 KYRIVSLIGGVNVQ---NQIKQLRDNKPQILVAT 286 56666666655444...45889999999999999 PP == domain 2 score: 77.4 bits; conditional E-value: 1.5e-25 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQ 69 +l ++g+ +a+lhg+ ++++r+eil + ++g+ ++v+t +rGid+pd ++Vin++lp++ y++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187294782 515 QLLENGFVAAPLHGDSSKDDRKEILARLRSGRLGIVVTTELSARGIDIPDMTHVINYELPTNAIHYVH 582 577899************************************************************** PP HHTTSSTTT CS Helicase_C 70 riGRtgRag 78 r+GR+gRag Dinobryon-sp-UTEXLB2267_CAMPEP_0187294782 583 RAGRCGRAG 591 *******97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.1 0.5 0.39 1.4e+03 100 137 .. 26 64 .. 5 103 .. 0.56 2 ! 17.6 0.0 6.6e-07 0.0025 23 67 .. 195 245 .. 143 345 .. 0.74 3 ? -0.9 1.7 0.32 1.2e+03 87 143 .. 358 415 .. 312 433 .. 0.58 4 ? -1.0 0.3 0.36 1.3e+03 22 43 .. 417 446 .. 393 461 .. 0.62 Alignments for each domain: == domain 1 score: -1.1 bits; conditional E-value: 0.39 HHHH................................... CS ResIII 100 kskdkeekkkkdkeiilttiqklhkaleeeeend.esks 137 k ++ + ++ + + ++i k++k+++ e++++ ++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187294782 26 KKSKFSHFTGFQGSSSNSKIEKVEKSINYEDDYNdDESD 64 444444444444444555555555555555555522222 PP == domain 2 score: 17.6 bits; conditional E-value: 6.6e-07 .TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHH CS ResIII 23 dekkrglivmaTGtGKTlvaasliarlar......kflflvprkelleqal 67 d++ +++ ++ TG+GKTl ++ ++++ + ++++++p++el++q Dinobryon-sp-UTEXLB2267_CAMPEP_0187294782 195 DDRVEVVMQAQTGSGKTLAYLLPLLQIVNpdinkvQAVIIAPSRELVQQIG 245 67788999*************8888888899999***************75 PP == domain 3 score: -0.9 bits; conditional E-value: 0.32 S-B---SEEEEEHHHHH...................................HTHHHH CS ResIII 87 vakkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeend.esksesleal 143 + +++ + +++++++++++++++ ++ ++++++ ++++++ e+++es+++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187294782 358 SSSSPXPLFAQNRRLSFSSSSSSSSSSSSSSSSSSIESNRVNNNSEEdEEENESSDND 415 4444445555555555555555555555555555555544444333333333333333 PP == domain 4 score: -1.0 bits; conditional E-value: 0.36 ..........TTSEEEEEESTTSTHHHHHH CS ResIII 22 e........dekkrglivmaTGtGKTlvaa 43 + ++++ ++++ aTG T++a+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187294782 417 NdrngsgidRKQQLICFASATGNDETVTAF 446 044444554567777888888876666666 PP >> PBP1_TM Transmembrane domain of transglycosylase PBP1 at N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 1.9 0.00061 2.3 32 58 .. 49 77 .. 15 92 .. 0.69 2 ? 5.9 1.0 0.0042 16 23 49 .. 393 420 .. 379 433 .. 0.45 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00061 PBP1_TM 32 ddd...edddeedddeeddeeeeemarkkk 58 + + ++dd++dd+ ++d+ ee +rk Dinobryon-sp-UTEXLB2267_CAMPEP_0187294782 49 E-KsinYEDDYNDDESDNDDSVEESSRKTG 77 2.2343677777777777777788888754 PP == domain 2 score: 5.9 bits; conditional E-value: 0.0042 PBP1_TM 23 asrrrrrddd..ddedddeedddeeddee 49 +++r +++ d+e+++ +d+d +d + Dinobryon-sp-UTEXLB2267_CAMPEP_0187294782 393 IESNRVNNNSeeDEEENESSDNDSND-RN 420 22222222222244555555555544.33 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (629 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1319 (0.0889353); expected 296.6 (0.02) Passed bias filter: 449 (0.0302744); expected 296.6 (0.02) Passed Vit filter: 79 (0.00532668); expected 14.8 (0.001) Passed Fwd filter: 23 (0.00155081); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.41u 0.31s 00:00:00.72 Elapsed: 00:00:00.68 # Mc/sec: 2414.56 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187274024 [L=702] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.5e-43 146.6 0.0 2.1e-41 141.2 0.0 2.5 2 DEAD DEAD/DEAH box helicase 1.1e-26 92.4 1.6 1.2e-26 92.3 0.0 1.9 2 Helicase_C Helicase conserved C-terminal domain ------ inclusion threshold ------ 0.065 12.2 0.0 0.065 12.2 0.0 3.6 4 CMS1 U3-containing 90S pre-ribosomal complex subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 141.2 0.0 4.3e-45 2.1e-41 2 168 .. 293 489 .. 292 490 .. 0.88 2 ? 2.7 0.0 0.015 75 71 102 .. 563 597 .. 540 605 .. 0.77 Alignments for each domain: == domain 1 score: 141.2 bits; conditional E-value: 4.3e-45 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT.........EEEEEESSHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.........xxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq.........kalivaPtreLaeq 59 piQ++aip + +d+++ aeTGsGKT+af+ip++ +l+ k+ a+++aPtreLa+q Dinobryon-sp-UTEXLB2267_CAMPEP_0187274024 293 PIQRQAIPIGMARRDIIGIAETGSGKTAAFMIPLLCYMLDLpKEYidrcedegpLAVVMAPTRELAQQ 360 8**********99**********************9999986655*********************** PP HHHHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEET CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 60 tlnnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDE 127 + +++ +++ky+++++++++gg++++ +q +l++gv+i++gTpgr++d ++++ l l q++++VlDE Dinobryon-sp-UTEXLB2267_CAMPEP_0187274024 361 IEEECIKLAKYTDFKTVCVVGGQSIE-EQGFRLRKGVEIIIGTPGRMVDCIEHNYLVLNQCNYVVLDE 427 ************************99.9999**999*****************999************ PP HHHHHSTTTHHHHHHHHHHSHHCT......T...............SEEEEEESS-THHHHH CS xxxxxxxxxxxxxxxxxxxxxxxx......x...............xxxxxxxxxxxxxxxx RF DEAD 128 adrllsqgfsdqlnqilqilcdgk......r...............lqvivlSATlpkdvkk 168 adr+ ++gf++q+ +l+++ + + + + ++SAT+p +v++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187274024 428 ADRMVDMGFEPQVIAVLEAMGGLLksedeeQlelqiqtaqqgkvlyRVTAMFSATMPPQVEQ 489 ***********8887777753333344444144555556667777678*********88886 PP == domain 2 score: 2.7 bits; conditional E-value: 0.015 SSCCEEEETTTSEHHHHHHHHH....TT.-SEEEEE CS xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF DEAD 71 pklrvlliiggvalardqlsvl....dngvdivvgT 102 ++ v +++gg+++++++++ l +++++i+v+T Dinobryon-sp-UTEXLB2267_CAMPEP_0187274024 563 LDYHVGILHGGKSQDQREDT-LemfrSGKIQILVAT 597 556899999*9996543333.3478*9*******99 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.9 0.4 2.6 1.3e+04 17 32 .. 199 214 .. 195 217 .. 0.82 2 ! 92.3 0.0 2.4e-30 1.2e-26 3 78 .] 560 635 .. 558 635 .. 0.98 Alignments for each domain: == domain 1 score: -3.9 bits; conditional E-value: 2.6 STHHHHHHHHHHHHTT CS Helicase_C 17 lpqnereeileqfnag 32 + +++re+ e+f+++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187274024 199 IRARQREKAREEFRKK 214 5678999999999987 PP == domain 2 score: 92.3 bits; conditional E-value: 2.4e-30 HHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHH CS Helicase_C 3 lekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQr 70 le +++v ilhg+ +q++re++le f++gk ++lvat+va+rG+d+pdv++V+n+d+p ++y +r Dinobryon-sp-UTEXLB2267_CAMPEP_0187274024 560 LESLDYHVGILHGGKSQDQREDTLEMFRSGKIQILVATDVAGRGLDIPDVSNVFNYDCPNKIANYCHR 627 78899*************************************************************** PP HTTSSTTT CS Helicase_C 71 iGRtgRag 78 iGRtgRag Dinobryon-sp-UTEXLB2267_CAMPEP_0187274024 628 IGRTGRAG 635 ******97 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -5.4 4.5 3 1.5e+04 13 43 .. 29 59 .. 16 72 .. 0.71 2 ? -6.1 5.1 3 1.5e+04 11 38 .. 69 96 .. 55 117 .. 0.57 3 ? -4.3 2.1 1.5 7.2e+03 18 37 .. 197 217 .. 177 247 .. 0.53 4 ? 12.2 0.0 1.3e-05 0.065 177 210 .. 395 428 .. 385 473 .. 0.83 Alignments for each domain: == domain 1 score: -5.4 bits; conditional E-value: 3 CMS1 13 dekgkkeksekkRskkkerkkeklketqDve 43 + +k+k e++R k++++ + k + + ve Dinobryon-sp-UTEXLB2267_CAMPEP_0187274024 29 QRLEAKRKEEEQRLKQEQEAHYKFISGKTVE 59 44557888899*****999988877666555 PP == domain 2 score: -6.1 bits; conditional E-value: 3 CMS1 11 endekgkkeksekkRskkkerkkeklke 38 + e+ ++e+++k+ sk+++++++++k Dinobryon-sp-UTEXLB2267_CAMPEP_0187274024 69 REREDRERERRRKEESKESNEHDHEIKA 96 1233333444444556666666666655 PP == domain 3 score: -4.3 bits; conditional E-value: 1.5 CMS1 18 keksekkRskkke.rkkeklk 37 k+ + ++R+k +e + k++l Dinobryon-sp-UTEXLB2267_CAMPEP_0187274024 197 KKIRARQREKAREeFRKKQLE 217 222223444432202333333 PP == domain 4 score: 12.2 bits; conditional E-value: 1.3e-05 CMS1 177 rigiavGtpgRiadLleeeslsvdeLkrivlDas 210 + i +GtpgR++d +e++ l +++ +++vlD + Dinobryon-sp-UTEXLB2267_CAMPEP_0187274024 395 GVEIIIGTPGRMVDCIEHNYLVLNQCNYVVLDEA 428 57789***************************75 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (702 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 1480 (0.099791); expected 296.6 (0.02) Passed bias filter: 352 (0.0237341); expected 296.6 (0.02) Passed Vit filter: 57 (0.0038433); expected 14.8 (0.001) Passed Fwd filter: 12 (0.000809116); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.39u 0.29s 00:00:00.68 Elapsed: 00:00:00.60 # Mc/sec: 3054.09 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187267736 [L=429] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-35 121.4 0.1 4e-35 120.8 0.1 1.3 1 DEAD DEAD/DEAH box helicase 2.4e-24 84.9 0.1 5.8e-24 83.7 0.0 1.7 1 Helicase_C Helicase conserved C-terminal domain 0.0001 22.1 0.3 0.00032 20.5 0.0 2.0 2 ResIII Type III restriction enzyme, res subunit 0.0028 16.7 0.0 0.0056 15.7 0.0 1.5 1 CMS1 U3-containing 90S pre-ribosomal complex subunit Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 120.8 0.1 1.1e-38 4e-35 2 166 .. 71 240 .. 70 243 .. 0.91 Alignments for each domain: == domain 1 score: 120.8 bits; conditional E-value: 1.1e-38 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT.....EEEEEESSHHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq.....kalivaPtreLaeqtlnnl 64 ++Q e+ip+++ g d++++a+ G+GKT++f+++ ++ + t k+++++ treLa q+ ++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187267736 71 EVQHECIPQAVLGMDIICQAKSGMGKTAVFVLATLHLIEVTP-GapnevKVVVLCHTRELAFQIQKEY 137 79******99999**********************9886652.246899******************* PP HHHTTT.SSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSS.HCTTEEEEEEETHHH CS xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF DEAD 65 kqfkky.pklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgkl.nlsqvrllVlDEadr 130 ++f ky p+++ + +ggv+ ++d + + ++ivvgTpgr++dl t+k +ls+v+ +VlDE+dr Dinobryon-sp-UTEXLB2267_CAMPEP_0187267736 138 ERFSKYlPDIKSRVFYGGVNVKQDVDALKLEIPHIVVGTPGRVMDLATTRKVlDLSHVKHFVLDECDR 205 ********************886666555666*****************9999*************** PP HHST.TTHHHHHHHHHHSHHCTTSEEEEEESS-THHH CS xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 131 llsq.gfsdqlnqilqilcdgkrlqvivlSATlpkdv 166 +l + ++++++++i +++ + + qv++ SATl+k++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187267736 206 MLAEvSMRRDVQTIFKATPH--EKQVMMYSATLDKEI 240 ***988999********955..59*********9775 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 83.7 0.0 1.6e-27 5.8e-24 2 78 .] 311 387 .. 310 387 .. 0.98 Alignments for each domain: == domain 1 score: 83.7 bits; conditional E-value: 1.6e-27 HHHHTTS-EEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHH CS Helicase_C 2 llekkgikvailhgelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvtsyiQ 69 lle+++++++++h+ l+q+er ++ f++ ++++lv+t+ ++rGid++ vn Vin+d+p+ ++y++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187267736 311 LLEDCNFPSICIHSMLKQEERISRFKAFKDFQKRILVSTDLFGRGIDIERVNIVINYDFPDQSDQYLH 378 6999**************************************************************** PP HHTTSSTTT CS Helicase_C 70 riGRtgRag 78 r+GR+gR+g Dinobryon-sp-UTEXLB2267_CAMPEP_0187267736 379 RVGRAGRFG 387 *******97 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.3 0.1 1.7 6.4e+03 90 119 .. 16 45 .. 6 55 .. 0.56 2 ! 20.5 0.0 8.7e-08 0.00032 30 163 .. 88 211 .. 83 238 .. 0.66 Alignments for each domain: == domain 1 score: -3.3 bits; conditional E-value: 1.7 ---SEEEEEHHHHH................ CS ResIII 90 kdklfgeeqkkskdkeekkkkdkeiiltti 119 + ++ + q++sk +eek++k+ ++ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187267736 16 DADQQVDYQGSSKPTEEKDTKKGHYVGIHT 45 334445555556666666555555555544 PP == domain 2 score: 20.5 bits; conditional E-value: 8.7e-08 EEESTTSTHHHHHHHHHHHH-S.........-EEEEESSHHHHHHHHHHGGGGTGG...GEEEESSS- CS ResIII 30 ivmaTGtGKTlvaasliarlar.........kflflvprkelleqaleefkkfeskkiefekkniava 88 ++ G+GKT v + ++l++ k+++l++++el q ++e+++f +++ ++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187267736 88 CQAKSGMGKTAVFVLATLHLIEvtpgapnevKVVVLCHTRELAFQIQKEYERF---------SKYLPD 146 56788*********98999999****************************333.........344556 PP B---SEEEEEHHHHH..................................HTHHHHTTT-SEEEEETGG CS ResIII 89 kkdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaH 156 k+++f ++ +d + k + i++ t ++ ++++ l + + ++ DE+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187267736 147 IKSRVFYGGVNVKQDVDALKLEIPHIVVGTPGRVMDLATTRK----------VLDLSHVKHFVLDECD 204 666666666666666666666666666666666665554322..........2223344456666666 PP GTTSTT. CS ResIII 157 rlsakkk 163 r+ a+ + Dinobryon-sp-UTEXLB2267_CAMPEP_0187267736 205 RMLAEVS 211 6666655 PP >> CMS1 U3-containing 90S pre-ribosomal complex subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.0 1.5e-06 0.0056 159 209 .. 151 202 .. 107 218 .. 0.87 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 1.5e-06 CMS1 159 LFakHiklkesitylkksrigiavGtpgRiadLl.eeeslsvdeLkrivlDa 209 +F + +k+++ lk i vGtpgR++dL + ++l ++++k+ vlD Dinobryon-sp-UTEXLB2267_CAMPEP_0187267736 151 VFYGGVNVKQDVDALKLEIPHIVVGTPGRVMDLAtTRKVLDLSHVKHFVLDE 202 56666889999999999999*************97789************96 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (429 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 471 (0.0317578); expected 296.6 (0.02) Passed bias filter: 334 (0.0225204); expected 296.6 (0.02) Passed Vit filter: 29 (0.00195536); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.24u 0.26s 00:00:00.50 Elapsed: 00:00:00.56 # Mc/sec: 1999.70 // Query: Dinobryon-sp-UTEXLB2267_CAMPEP_0187263216 [L=767] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-43 148.2 0.0 2e-41 141.2 0.0 2.9 3 DEAD DEAD/DEAH box helicase 9e-22 76.7 0.8 2.4e-21 75.3 0.6 1.7 1 Helicase_C Helicase conserved C-terminal domain 0.0012 18.7 0.0 0.021 14.6 0.0 2.9 3 ResIII Type III restriction enzyme, res subunit ------ inclusion threshold ------ 0.015 15.2 0.0 0.036 14.0 0.0 1.5 1 Helicase_C_2 Helicase C-terminal domain Domain annotation for each model (and alignments): >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 141.2 0.0 5.5e-45 2e-41 1 167 [. 186 355 .. 186 357 .. 0.93 2 ? 0.9 0.0 0.072 2.7e+02 90 108 .. 360 378 .. 358 397 .. 0.80 3 ? 2.0 0.0 0.034 1.3e+02 46 92 .. 409 456 .. 382 488 .. 0.76 Alignments for each domain: == domain 1 score: 141.2 bits; conditional E-value: 5.5e-45 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHTCTT.......EEEEEESSHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxx RF DEAD 1 tpiQaeaiplilgggdvlvaaeTGsGKTlaflipviqilletkdq.......kalivaPtreLaeqtl 61 tpiQa+a+p +l+g d+++ a+TGsGKTla+l p++ ++l + +q l+++PtreLa q++ Dinobryon-sp-UTEXLB2267_CAMPEP_0187263216 186 TPIQAQALPIALSGFDLIGLAKTGSGKTLAYLWPMLIHILAQ-PQmnvgdgpIGLVLVPTRELATQIY 252 89**********************************999986.4456********************* PP HHHHHHTTTSSCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHHTTSSHCTTEEEEEEETHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 62 nnlkqfkkypklrvlliiggvalardqlsvldngvdivvgTpgrlddlvstgklnlsqvrllVlDEad 129 +++++f+k ++r ++i+gg + + ++ l+ +++vv+Tpgr++++v+ + nl ++ ++VlDEad Dinobryon-sp-UTEXLB2267_CAMPEP_0187263216 253 SEANKFAKGYGIRPCAIYGGAGKY-EMSKALKTAPELVVATPGRFIEMVRCKATNLRRCTMVVLDEAD 319 *******************99955.888888999****************9777************** PP HHHSTTTHHHHHHHHHHSHHCTTSEEEEEESS-THHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 130 rllsqgfsdqlnqilqilcdgkrlqvivlSATlpkdvk 167 r+ ++gf+ q+++i++ ++ ++q++++SAT++k+v+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187263216 320 RMFEMGFEYQMRSIVSNVRP--DRQTLMFSATMKKKVE 355 *****************944..59**********8886 PP == domain 2 score: 0.9 bits; conditional E-value: 0.072 HHHTT.-SEEEEEHHHHHH CS xxxxxxxxxxxxxxxxxxx RF DEAD 90 svldngvdivvgTpgrldd 108 ++l+n+++ivvgT g+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187263216 360 EMLKNEIRIVVGTIGQANP 378 567999********98655 PP == domain 3 score: 2.0 bits; conditional E-value: 0.034 EEEEEESSHHHHHHHHHHHHHHTTT..SSCCEEEETTTSEHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 kalivaPtreLaeqtlnnlkqfkky..pklrvlliiggvalardqlsvl 92 k+li + +++ +e+ ++l+ f++ +++ v +++g+++++ d++ v+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187263216 409 KVLIFVLSKAGVEELTKSLRAFFQSrqLDVVVDCLHGDKDQS-DRQAVM 456 89999999999************9966667778889999966.666666 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.3 0.6 6.6e-25 2.4e-21 5 78 .] 435 510 .. 432 510 .. 0.93 Alignments for each domain: == domain 1 score: 75.3 bits; conditional E-value: 6.6e-25 HTTS-EEEESTTSTHHHHHHHHHHHHTTSS..SEEEESGGGTSSSTSTTEEEEEESSSSSSHHHHHHH CS Helicase_C 5 kkgikvailhgelpqnereeileqfnagks..kvlvatnvaerGidlpdvnvVinfdlprsvtsyiQr 70 + ++ v +lhg+ q++r++++++f ++ + ++lvat++a+rG+d++d+++Vin+d+ ++ ++y++r Dinobryon-sp-UTEXLB2267_CAMPEP_0187263216 435 QLDVVVDCLHGDKDQSDRQAVMQRFGNKGTttRCLVATDIASRGLDVKDIRTVINYDVAKNIETYVHR 502 66677899*****************7776669************************************ PP HTTSSTTT CS Helicase_C 71 iGRtgRag 78 iGRtgR+g Dinobryon-sp-UTEXLB2267_CAMPEP_0187263216 503 IGRTGRMG 510 ******86 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.2 0.1 1.6 6e+03 113 113 .. 70 70 .. 27 105 .. 0.51 2 ! 14.6 0.0 5.7e-06 0.021 33 182 .. 207 350 .. 202 352 .. 0.65 3 ? -0.6 0.0 0.27 1e+03 100 138 .. 354 399 .. 323 474 .. 0.65 Alignments for each domain: == domain 1 score: -3.2 bits; conditional E-value: 1.6 . CS ResIII 113 e 113 e Dinobryon-sp-UTEXLB2267_CAMPEP_0187263216 70 E 70 1 PP == domain 2 score: 14.6 bits; conditional E-value: 5.7e-06 STTSTHHHHHHH..HHHHH-S.........-EEEEESSHHHHHHHHHHGGGGTGG...GEEEESSS-B CS ResIII 33 aTGtGKTlvaas..liarlar.........kflflvprkelleqaleefkkfeskkiefekkniavak 89 TG+GKTl ++ li la+ l+lvp++el q + e +kf++ + +++++++a Dinobryon-sp-UTEXLB2267_CAMPEP_0187263216 207 KTGSGKTLAYLWpmLIHILAQpqmnvgdgpIGLVLVPTRELATQIYSEANKFAKGYGIRPCAIYGGAG 274 6**********54477777779999999*999**************9998888876666666664444 PP ---SEEEEEHHHHH..................................HTHHHHTTT-SEEEEETGGG CS ResIII 90 kdklfgeeqkkskdkeekkkkdkeiilttiqklhkaleeeeendeskseslealldefdviiiDEaHr 157 k + ++ k+ e++++t ++ + ++ + +l + +++ DEa r Dinobryon-sp-UTEXLB2267_CAMPEP_0187263216 275 KYE-----------MSKALKTAPELVVATPGRFIEMVRC-----------KATNLRRCTMVVLDEADR 320 322...........2223344555666666666655543...........223333555666666666 PP TTSTT....THHHHH..---SEEEEEESS- CS ResIII 158 lsakkk...yreile..fkkafllglTATp 182 + ++ +r i+ + + l ++AT Dinobryon-sp-UTEXLB2267_CAMPEP_0187263216 321 MFEMGFeyqMRSIVSnvRPDRQTLMFSATM 350 666665555555555665555666666665 PP == domain 3 score: -0.6 bits; conditional E-value: 0.27 HHHH.........................................H CS ResIII 100 kskdkeekkkkdkeiilttiqklhkaleeeeend.esks......e 138 ++ + +e k++++i++ ti + + ++++ e +++s + Dinobryon-sp-UTEXLB2267_CAMPEP_0187263216 354 VEGFAREMLKNEIRIVVGTIGQANPDIHQVAELLpDEMSkwswlsS 399 4444455556777777777777777776655554444444444441 PP >> Helicase_C_2 Helicase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.0 0.0 9.8e-06 0.036 9 79 .. 407 483 .. 404 489 .. 0.86 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 9.8e-06 Helicase_C_2 9 pggvlvffpSyslleevverlkeeleskkievfee......keesrekvleeykes..kgaillavcr 68 +g+vl+f+ S + +ee+++ l++ ++s+++ v++ ++++r+ v++++ ++ + +l+a+ Dinobryon-sp-UTEXLB2267_CAMPEP_0187263216 407 EGKVLIFVLSKAGVEELTKSLRAFFQSRQLDVVVDclhgdkDQSDRQAVMQRFGNKgtTTRCLVATD- 473 799***************************999999998855889*********9633666666666. PP Helicase_C_2 69 gkvseGidfsd 79 s G+d++d Dinobryon-sp-UTEXLB2267_CAMPEP_0187263216 474 -IASRGLDVKD 483 .9*******97 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (767 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 517 (0.0348594); expected 296.6 (0.02) Passed bias filter: 355 (0.0239363); expected 296.6 (0.02) Passed Vit filter: 37 (0.00249477); expected 14.8 (0.001) Passed Fwd filter: 4 (0.000269705); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.63 # Mc/sec: 3177.98 // Query: endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 [L=1829] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-67 224.9 0.0 1.9e-48 163.6 0.0 3.3 3 Ribonuclease_3 Ribonuclease III domain 2.1e-39 133.9 0.1 4.3e-39 132.9 0.1 1.6 1 PAZ PAZ domain 6.6e-31 105.9 0.0 1.8e-30 104.5 0.0 1.8 1 Dicer_dimer Dicer dimerisation domain 8.1e-21 74.3 0.0 1.2e-12 47.9 0.0 3.3 3 Ribonucleas_3_3 Ribonuclease-III-like 8.4e-18 64.0 0.0 2.5e-17 62.4 0.0 1.8 1 Helicase_C Helicase conserved C-terminal domain 8.9e-11 41.5 0.0 1.8e-10 40.5 0.0 1.5 1 DEAD DEAD/DEAH box helicase 5e-10 39.5 0.4 1.7e-09 37.7 0.0 2.1 2 ResIII Type III restriction enzyme, res subunit Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.0 2.5 5.3e+03 33 67 .. 305 343 .. 283 421 .. 0.72 2 ! 163.6 0.0 8.9e-52 1.9e-48 1 114 [] 1313 1575 .. 1313 1575 .. 0.96 3 ! 57.3 0.0 8.5e-19 1.8e-15 1 67 [. 1702 1768 .. 1702 1804 .. 0.88 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 2.5 HHHHHHT.....SHHHHHHHHHTTTCHCHHBHHHHHHSTT CS Ribonuclease_3 33 klrsklv.....snenlarlakklglpsylresefdppkn 67 + r+ lv +++ a + + +l++y++++ ++++++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 305 DCRAVLVvlgpwCADKVAGMMVR-ELQKYIKHEQEELHRK 343 55555555555544444444444.5999999888888765 PP == domain 2 score: 163.6 bits; conditional E-value: 8.9e-52 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 erLe+LGD++lk+aittylf+typd+heg+ls++rsk+vs endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352 8*************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T....SSSSS. CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp....lnkdla 76 n+nl+rl+kk+glps++++s+fdpp+nwlp +n+d+ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1353 NCNLYRLGKKKGLPSRMVVSIFDPPVNWLPpgyvVNQDKS 1392 **********************************777777 PP SC...................................... CS Ribonuclease_3 77 ngk..................................... 79 n++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1393 NTDkwekdemtkdcmlangkldedyeeedeeeeslmwrap 1432 77788888888889999999999999999*********** PP ........................................ CS Ribonuclease_3 80 ........................................ 79 endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1433 keeadyeddfleydqehirfidnmlmgsgafvkkislspf 1472 **************************************** PP ........................................ CS Ribonuclease_3 80 ........................................ 79 endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1473 sttdsayewkmpkksslgsmpfssdfedfdysswdamcyl 1512 **************************************** PP ........................................ CS Ribonuclease_3 80 ...........................grqsisydlk.eq 91 g+qsisydl+ eq endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1513 dpskaveeddfvvgfwnpseencgvdtGKQSISYDLHtEQ 1552 *********99999999999999999999*********** PP ..TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 92 siadkvladvvEAliGaiyldsg 114 +iadk++ad+vEAl+G++++++g endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1553 CIADKSIADCVEALLGCYLTSCG 1575 **********************8 PP == domain 3 score: 57.3 bits; conditional E-value: 8.5e-19 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 +rLefLGDa+l+++it++l+e + + ++g l++lrs+lv+ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1702 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVN 1741 7********************99999************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT CS Ribonuclease_3 41 nenlarlakklglpsylresefdppkn 67 n+ a la k++ ++y+++ + ++ + endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1742 NTIFASLAVKYDYHKYFKAVSPELFHV 1768 ****************99877766655 PP >> PAZ PAZ domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 132.9 0.1 2e-42 4.3e-39 4 134 .. 894 1064 .. 891 1065 .. 0.98 Alignments for each domain: == domain 1 score: 132.9 bits; conditional E-value: 2e-42 HHHHHHCCCSSSHCCTSHHHH........HHHHHTTEEEE CS PAZ 4 leflerilkqetrrqkkfrkk........lakalkglivl 35 ++f+e+i+k+e r ++ ++k+ +++++++++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 894 FKFMEDIEKSEARIGIPSTKYtketpfvfKLEDYQDAVII 933 78****************999*******999********* PP ETTSCGG..EEEEEEEEECCETTTSEEEETTTEEEEHHHH CS PAZ 36 ttyrnne..rkyriadiseeptpestfpdkegkeitvaeY 73 ++yrn + +++++ad+ ++ tp s+fp +++t+aeY endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 934 PRYRNFDqpHRFYVADVYTDLTPLSKFPSP--EYETFAEY 971 ******************************..******** PP HHHCCT---SSTTSEEEEEECSSSS............... CS PAZ 74 fkkkYnielkypnqplldvkktsrr............... 98 +k+kYn++l++ nqplldv++ts+r endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 972 YKTKYNLDLTNLNQPLLDVDHTSSRlnlltprhlnqkgka 1011 **************************************** PP .................SEEEE-CCCEEEETTT---S--X CS PAZ 99 .................qeqylppElcdivplqrslkkdf 121 ++q+l+pElc i+p+++sl++++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1012 lplssaekrkakweslqNKQILVPELCAIHPIPASLWRKA 1051 **************************************** PP XXXXXXXXXXXXX CS PAZ 122 aaqksilyrtral 134 ++++silyr ++l endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1052 VCLPSILYRLHCL 1064 *********9986 PP >> Dicer_dimer Dicer dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 104.5 0.0 8.6e-34 1.8e-30 1 90 [. 630 721 .. 630 722 .. 0.97 Alignments for each domain: == domain 1 score: 104.5 bits; conditional E-value: 8.6e-34 HHHHHHHHHTTSSS-TT--SS-EEEEEE--G-EEE.EEE- CS Dicer_dimer 1 aiallarYCakLpsdaftklkpefevekeeeglvc.tveL 39 ai +++rYCa+Lpsd+ft+l+p++++++ +g+++ t++L endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 630 AIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYsTLYL 669 799***************************988888**** PP -TT-SS--.EEEE--SSHHHHHHHHHHHHHHHHHHH-S-T CS Dicer_dimer 40 Plnsplre.iegkpmkskklakqsaAfkackkLyelgeLn 78 P+nsplr+ i+g+pm+ ++la++ +A+ +c+kL+++geL+ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 670 PINSPLRAsIVGPPMSCVRLAERVVALICCEKLHKIGELD 709 **************************************** PP TTS--HHHH-S- CS Dicer_dimer 79 dhLlPvkkerva 90 dhL+Pv+ke+v+ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 710 DHLMPVGKETVK 721 ********9986 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.8 0.0 6.3e-08 0.00013 17 80 .. 1306 1371 .. 1293 1409 .. 0.81 2 ? -0.4 0.0 0.47 9.9e+02 93 119 .. 1556 1582 .. 1547 1588 .. 0.73 3 ! 47.9 0.0 5.6e-16 1.2e-12 1 79 [. 1679 1759 .. 1679 1768 .. 0.88 Alignments for each domain: == domain 1 score: 21.8 bits; conditional E-value: 6.3e-08 Ribonucleas_3_3 17 grkgyN.erLefLGdavLelvvseyllek.akkdegeltk 54 ++ g+N erLe+LGd+ L+ ++++yl+ ++ eg+l+ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1306 ASDGFNlERLEMLGDSFLKHAITTYLFCTyPDAHEGRLSY 1345 44444449*****************9866267789***** PP Ribonucleas_3_3 55 klaslvseeslaeiakelgLgkvlrl 80 ++++ vs+ +l +++k+ gL + +++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1346 MRSKKVSNCNLYRLGKKKGLPSRMVV 1371 *******************9988876 PP == domain 2 score: -0.4 bits; conditional E-value: 0.47 Ribonucleas_3_3 93 ekvladaleAliGAiyldkGaeeakef 119 +k +ad++eAl+G G ++a+ f endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1556 DKSIADCVEALLGCYLTSCGERAAQLF 1582 56679********86666666666555 PP == domain 3 score: 47.9 bits; conditional E-value: 5.6e-16 Ribonucleas_3_3 1 deelllqaltHkSyangr.kgyNerLefLGdavLelvvse 39 ++ +llqa+tH Sy+++ +++++rLefLGda+L+ ++++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1679 NKAYLLQAFTHASYHYNTiTDCYQRLEFLGDAILDYLITK 1718 57889*********8665389******************* PP Ribonucleas_3_3 40 yllekakk.degeltkklaslvseeslaeiakelgLgkvl 78 +l+e++++ + g lt +++lv+++ a +a + + k+ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1719 HLYEDPRQhSPGVLTDLRSALVNNTIFASLAVKYDYHKYF 1758 *****8662689*******************999888886 PP Ribonucleas_3_3 79 r 79 + endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1759 K 1759 5 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.4 0.0 1.2e-20 2.5e-17 16 76 .. 495 554 .. 469 556 .. 0.85 Alignments for each domain: == domain 1 score: 62.4 bits; conditional E-value: 1.2e-20 TSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEE CS Helicase_C 16 elpqnereeileqfnagkskvlvatnvaerGidlpdvnvV 55 e + +++ee+l++f+a++++ l+at+++e+G+d+p++n+V endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 495 EAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLV 534 5667899********************************* PP EESSSSSSHHHHHHHHTTSST CS Helicase_C 56 infdlprsvtsyiQriGRtgR 76 + fdlp+ ++sy+Q GR +R endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 535 VRFDLPTEYRSYVQSKGR-AR 554 ******************.55 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.5 0.0 8.6e-14 1.8e-10 2 161 .. 46 208 .. 45 213 .. 0.73 Alignments for each domain: == domain 1 score: 40.5 bits; conditional E-value: 8.6e-14 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqille 41 ++Q e ++++l+ ++++v+ +TGsGKT ++++ + ++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 46 KYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQ 84 679999999995.9*****************976665554 PP TCTT........EEEEEESSHHHHHHHHHHHHHHTTT..S CS xxxx........xxxxxxxxxxxxxxxxxxxxxxxxx..x RF DEAD 42 tkdq........kalivaPtreLaeqtlnnlkqfkky..p 71 + ++++++ + ++q+++ +++ + endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 85 I--RgdfsrngkRTVFLVNSANQVAQQVSAVRTHSDLkvG 122 3..1346788889999999988888888888666654443 PP SCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 72 klrvlliiggvalardqlsvldngvdivvgTpgrlddlvs 111 + + l + + +++r ++++ + +++++T +++++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 123 EYSNLEVNASWTKERWNQEFT--KHQVLIMTCYVALNVLK 160 334444444445555566566..47*************** PP TTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 112 tgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgk 151 +g l+ls+++llV+DE++ +++i++++++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 161 NGYLSLSDINLLVFDECHLAIL---DHPYREIMKLCENCP 197 ******************8766...234555666654444 PP TSE.EEEEESS CS xxx.xxxxxxx RF DEAD 152 rlq.vivlSAT 161 +++ ++ l+A endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 198 SCPrILGLTAS 208 44447778776 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.7 0.0 8.1e-13 1.7e-09 2 180 .. 42 207 .. 30 209 .. 0.73 2 ? -3.9 0.3 4.9 1e+04 99 138 .. 1390 1431 .. 1386 1449 .. 0.54 Alignments for each domain: == domain 1 score: 37.7 bits; conditional E-value: 8.1e-13 -EE-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHH CS ResIII 2 lklrpyQeeaienllesiekedekkrglivmaTGtGKTlv 41 +++r+yQ e +e+ l ++ ++ + TG+GKT++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 42 YTPRKYQVELLEAAL--------DHNTIVCLNTGSGKTFI 73 456777777777777........56899999********* PP HHHHHHHH-S...........-EEEEESSHHHHHHHHHHG CS ResIII 42 aasliarlar...........kflflvprkelleqaleef 70 a l ++l +++flv++ + + q + endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 74 AVLLTKELSYqirgdfsrngkRTVFLVNSANQVAQQVSAV 113 **666666558889***********************999 PP GGGTGG...GEEEESSS-B---SEEEEEHHHHH....... CS ResIII 71 kkfeskkiefekkniavakkdklfgeeqkkskdkeekkkk 110 ++ s+ + e++n+ + + k++ +++ + endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 114 -RTHSDLKVGEYSNLE---------VNASWTKERWNQEFT 143 .455554444444443.........344444444444445 PP ...........................HTHHHHTTT-SEE CS ResIII 111 dkeiilttiqklhkaleeeeendeskseslealldefdvi 150 + +++++t + l++ +l +++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 144 KHQVLIMTCYVALNVLKN-----------GYLSLSDINLL 172 555555555555555444...........456677788** PP EEETGGGTTSTT.THHHHH.....---SEEEEEES CS ResIII 151 iiDEaHrlsakkkyreile.....fkkafllglTA 180 ++DE+H + ++ yrei++ + + +lglTA endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 173 VFDECHLAILDHPYREIMKlcencPSCPRILGLTA 207 *******************9998855667899999 PP == domain 2 score: -3.9 bits; conditional E-value: 4.9 HHHHH................................... CS ResIII 99 kkskdkeekkkkdkeiilttiqklhkaleeeeend.esks 137 +ks+ + +k++ +++++ + kl ++ eee+e++ + ++ endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1390 DKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEeSLMW 1429 4444444444555556666667888887776666633333 PP .H CS ResIII 138 .e 138 + endoribonuclease_Dicer_isoform_2_[Homo_sapiens]gi|307133775|ref|NP_001182502.1 1430 rA 1431 53 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1829 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 558 (0.0376239); expected 296.6 (0.02) Passed bias filter: 242 (0.0163172); expected 296.6 (0.02) Passed Vit filter: 37 (0.00249477); expected 14.8 (0.001) Passed Fwd filter: 7 (0.000471984); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 7 [number of targets reported over threshold] # CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.73 # Mc/sec: 6540.13 // Query: _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 [L=1922] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.7e-75 249.3 0.1 2e-48 163.5 0.0 3.3 3 Ribonuclease_3 Ribonuclease III domain 2.2e-39 133.8 0.1 4.6e-39 132.8 0.1 1.6 1 PAZ PAZ domain 5.8e-31 106.1 0.0 1.9e-30 104.4 0.0 2.0 1 Dicer_dimer Dicer dimerisation domain 1.1e-25 90.0 0.0 3.1e-17 62.7 0.0 3.8 3 Ribonucleas_3_3 Ribonuclease-III-like 9e-18 63.9 0.0 2.7e-17 62.3 0.0 1.8 1 Helicase_C Helicase conserved C-terminal domain 9.5e-11 41.4 0.0 2e-10 40.4 0.0 1.5 1 DEAD DEAD/DEAH box helicase 5.4e-10 39.4 0.4 1.8e-09 37.6 0.0 2.1 2 ResIII Type III restriction enzyme, res subunit 0.00085 19.8 0.0 0.0031 18.0 0.0 2.1 1 dsrm Double-stranded RNA binding motif Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.3 0.0 3.1 5.7e+03 33 67 .. 305 343 .. 283 419 .. 0.72 2 ! 163.5 0.0 1.1e-51 2e-48 1 114 [] 1313 1575 .. 1313 1575 .. 0.96 3 ! 82.1 0.0 1.9e-26 3.6e-23 1 114 [] 1702 1824 .. 1702 1824 .. 0.83 Alignments for each domain: == domain 1 score: -2.3 bits; conditional E-value: 3.1 HHHHHHT.....SHHHHHHHHHTTTCHCHHBHHHHHHSTT CS Ribonuclease_3 33 klrsklv.....snenlarlakklglpsylresefdppkn 67 + r+ lv +++ a + + +l++y++++ ++++++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 305 DCRAVLVvlgpwCADKVAGMMVR-ELQKYIKHEQEELHRK 343 55555555555544444444444.5999999888888765 PP == domain 2 score: 163.5 bits; conditional E-value: 1.1e-51 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 erLe+LGD++lk+aittylf+typd+heg+ls++rsk+vs _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352 8*************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T....SSSSS. CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp....lnkdla 76 n+nl+rl+kk+glps++++s+fdpp+nwlp +n+d+ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1353 NCNLYRLGKKKGLPSRMVVSIFDPPVNWLPpgyvVNQDKS 1392 **********************************777777 PP SC...................................... CS Ribonuclease_3 77 ngk..................................... 79 n++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1393 NTDkwekdemtkdcmlangkldedyeeedeeeeslmwrap 1432 77788888888889999999999999999*********** PP ........................................ CS Ribonuclease_3 80 ........................................ 79 _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1433 keeadyeddfleydqehirfidnmlmgsgafvkkislspf 1472 **************************************** PP ........................................ CS Ribonuclease_3 80 ........................................ 79 _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1473 sttdsayewkmpkksslgsmpfssdfedfdysswdamcyl 1512 **************************************** PP ........................................ CS Ribonuclease_3 80 ...........................grqsisydlk.eq 91 g+qsisydl+ eq _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1513 dpskaveeddfvvgfwnpseencgvdtGKQSISYDLHtEQ 1552 *********99999999999999999999*********** PP ..TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 92 siadkvladvvEAliGaiyldsg 114 +iadk++ad+vEAl+G++++++g _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1553 CIADKSIADCVEALLGCYLTSCG 1575 **********************8 PP == domain 3 score: 82.1 bits; conditional E-value: 1.9e-26 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 +rLefLGDa+l+++it++l+e + + ++g l++lrs+lv+ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1702 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVN 1741 7********************99999************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T.....SSSSS CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp.....lnkdl 75 n+ a la k++ ++y+++ + ++ + + + l+k++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1742 NTIFASLAVKYDYHKYFKAVSPELFHVIDDfvqfqLEKNE 1781 ******************9999999999999887633333 PP .SC...................TSHHHHHHHHHHHHHHHH CS Ribonuclease_3 76 angk....grqsisydlkeqsiadkvladvvEAliGaiyl 111 +g +r++ ++ + e +k ++d++E+l+Gaiy+ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1782 MQGMdselRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYM 1821 33335554334433333366668***************** PP HTT CS Ribonuclease_3 112 dsg 114 dsg _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1822 DSG 1824 *97 PP >> PAZ PAZ domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 132.8 0.1 2.5e-42 4.6e-39 4 134 .. 894 1064 .. 891 1065 .. 0.98 Alignments for each domain: == domain 1 score: 132.8 bits; conditional E-value: 2.5e-42 HHHHHHCCCSSSHCCTSHHHH........HHHHHTTEEEE CS PAZ 4 leflerilkqetrrqkkfrkk........lakalkglivl 35 ++f+e+i+k+e r ++ ++k+ +++++++++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 894 FKFMEDIEKSEARIGIPSTKYtketpfvfKLEDYQDAVII 933 78****************999*******999********* PP ETTSCGG..EEEEEEEEECCETTTSEEEETTTEEEEHHHH CS PAZ 36 ttyrnne..rkyriadiseeptpestfpdkegkeitvaeY 73 ++yrn + +++++ad+ ++ tp s+fp +++t+aeY _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 934 PRYRNFDqpHRFYVADVYTDLTPLSKFPSP--EYETFAEY 971 ******************************..******** PP HHHCCT---SSTTSEEEEEECSSSS............... CS PAZ 74 fkkkYnielkypnqplldvkktsrr............... 98 +k+kYn++l++ nqplldv++ts+r _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 972 YKTKYNLDLTNLNQPLLDVDHTSSRlnlltprhlnqkgka 1011 **************************************** PP .................SEEEE-CCCEEEETTT---S--X CS PAZ 99 .................qeqylppElcdivplqrslkkdf 121 ++q+l+pElc i+p+++sl++++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1012 lplssaekrkakweslqNKQILVPELCAIHPIPASLWRKA 1051 **************************************** PP XXXXXXXXXXXXX CS PAZ 122 aaqksilyrtral 134 ++++silyr ++l _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1052 VCLPSILYRLHCL 1064 *********9986 PP >> Dicer_dimer Dicer dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 104.4 0.0 1e-33 1.9e-30 1 90 [. 630 721 .. 630 722 .. 0.97 Alignments for each domain: == domain 1 score: 104.4 bits; conditional E-value: 1e-33 HHHHHHHHHTTSSS-TT--SS-EEEEEE--G-EEE.EEE- CS Dicer_dimer 1 aiallarYCakLpsdaftklkpefevekeeeglvc.tveL 39 ai +++rYCa+Lpsd+ft+l+p++++++ +g+++ t++L _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 630 AIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYsTLYL 669 799***************************988888**** PP -TT-SS--.EEEE--SSHHHHHHHHHHHHHHHHHHH-S-T CS Dicer_dimer 40 Plnsplre.iegkpmkskklakqsaAfkackkLyelgeLn 78 P+nsplr+ i+g+pm+ ++la++ +A+ +c+kL+++geL+ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 670 PINSPLRAsIVGPPMSCVRLAERVVALICCEKLHKIGELD 709 **************************************** PP TTS--HHHH-S- CS Dicer_dimer 79 dhLlPvkkerva 90 dhL+Pv+ke+v+ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 710 DHLMPVGKETVK 721 ********9986 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.8 0.0 7.6e-08 0.00014 17 80 .. 1306 1371 .. 1293 1409 .. 0.81 2 ? -0.5 0.0 0.57 1e+03 93 119 .. 1556 1582 .. 1547 1588 .. 0.73 3 ! 62.7 0.0 1.7e-20 3.1e-17 1 114 [. 1679 1826 .. 1679 1831 .. 0.87 Alignments for each domain: == domain 1 score: 21.8 bits; conditional E-value: 7.6e-08 Ribonucleas_3_3 17 grkgyN.erLefLGdavLelvvseyllek.akkdegeltk 54 ++ g+N erLe+LGd+ L+ ++++yl+ ++ eg+l+ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1306 ASDGFNlERLEMLGDSFLKHAITTYLFCTyPDAHEGRLSY 1345 44444449*****************9866267789***** PP Ribonucleas_3_3 55 klaslvseeslaeiakelgLgkvlrl 80 ++++ vs+ +l +++k+ gL + +++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1346 MRSKKVSNCNLYRLGKKKGLPSRMVV 1371 *******************9988876 PP == domain 2 score: -0.5 bits; conditional E-value: 0.57 Ribonucleas_3_3 93 ekvladaleAliGAiyldkGaeeakef 119 +k +ad++eAl+G G ++a+ f _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1556 DKSIADCVEALLGCYLTSCGERAAQLF 1582 56679********86666666666555 PP == domain 3 score: 62.7 bits; conditional E-value: 1.7e-20 Ribonucleas_3_3 1 deelllqaltHkSyangr.kgyNerLefLGdavLelvvse 39 ++ +llqa+tH Sy+++ +++++rLefLGda+L+ ++++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1679 NKAYLLQAFTHASYHYNTiTDCYQRLEFLGDAILDYLITK 1718 57889*********8665389******************* PP Ribonucleas_3_3 40 yllekakk.degeltkklaslvseeslaeiakelg..... 73 +l+e++++ + g lt +++lv+++ a +a + + _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1719 HLYEDPRQhSPGVLTDLRSALVNNTIFASLAVKYDyhkyf 1758 *****8662689*******************9999999** PP Ribonucleas_3_3 74 ..........................Lgkvlrl.rkgeee 86 +++ lr +++ee+ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1759 kavspelfhviddfvqfqleknemqgMDSELRRsEEDEEK 1798 **********999999997777777766666665666777 PP Ribonucleas_3_3 87 tessgrekvladaleAliGAiyldkGae 114 +e + k ++d++e+l GAiy+d+G++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1799 EEDIEVPKAMGDIFESLAGAIYMDSGMS 1826 77778889******************85 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.3 0.0 1.4e-20 2.7e-17 16 76 .. 495 554 .. 469 556 .. 0.85 Alignments for each domain: == domain 1 score: 62.3 bits; conditional E-value: 1.4e-20 TSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEE CS Helicase_C 16 elpqnereeileqfnagkskvlvatnvaerGidlpdvnvV 55 e + +++ee+l++f+a++++ l+at+++e+G+d+p++n+V _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 495 EAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLV 534 5667899********************************* PP EESSSSSSHHHHHHHHTTSST CS Helicase_C 56 infdlprsvtsyiQriGRtgR 76 + fdlp+ ++sy+Q GR +R _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 535 VRFDLPTEYRSYVQSKGR-AR 554 ******************.55 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.4 0.0 1.1e-13 2e-10 2 161 .. 46 208 .. 45 213 .. 0.73 Alignments for each domain: == domain 1 score: 40.4 bits; conditional E-value: 1.1e-13 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipviqille 41 ++Q e ++++l+ ++++v+ +TGsGKT ++++ + ++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 46 KYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQ 84 679999999995.9*****************976665554 PP TCTT........EEEEEESSHHHHHHHHHHHHHHTTT..S CS xxxx........xxxxxxxxxxxxxxxxxxxxxxxxx..x RF DEAD 42 tkdq........kalivaPtreLaeqtlnnlkqfkky..p 71 + ++++++ + ++q+++ +++ + _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 85 I--RgdfsrngkRTVFLVNSANQVAQQVSAVRTHSDLkvG 122 3..1346788889999999988888888888666654443 PP SCCEEEETTTSEHHHHHHHHHTT.-SEEEEEHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 72 klrvlliiggvalardqlsvldngvdivvgTpgrlddlvs 111 + + l + + +++r ++++ + +++++T +++++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 123 EYSNLEVNASWTKERWNQEFT--KHQVLIMTCYVALNVLK 160 334444444445555566566..47*************** PP TTSSHCTTEEEEEEETHHHHHSTTTHHHHHHHHHHSHHCT CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 112 tgklnlsqvrllVlDEadrllsqgfsdqlnqilqilcdgk 151 +g l+ls+++llV+DE++ +++i++++++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 161 NGYLSLSDINLLVFDECHLAIL---DHPYREIMKLCENCP 197 ******************8766...234555666654444 PP TSE.EEEEESS CS xxx.xxxxxxx RF DEAD 152 rlq.vivlSAT 161 +++ ++ l+A _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 198 SCPrILGLTAS 208 44447778776 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.6 0.0 9.9e-13 1.8e-09 2 180 .. 42 207 .. 30 209 .. 0.73 2 ? -4.0 0.3 5.9 1.1e+04 99 138 .. 1390 1431 .. 1386 1449 .. 0.54 Alignments for each domain: == domain 1 score: 37.6 bits; conditional E-value: 9.9e-13 -EE-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHH CS ResIII 2 lklrpyQeeaienllesiekedekkrglivmaTGtGKTlv 41 +++r+yQ e +e+ l ++ ++ + TG+GKT++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 42 YTPRKYQVELLEAAL--------DHNTIVCLNTGSGKTFI 73 456777777777777........56899999********* PP HHHHHHHH-S...........-EEEEESSHHHHHHHHHHG CS ResIII 42 aasliarlar...........kflflvprkelleqaleef 70 a l ++l +++flv++ + + q + _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 74 AVLLTKELSYqirgdfsrngkRTVFLVNSANQVAQQVSAV 113 **666666558889***********************999 PP GGGTGG...GEEEESSS-B---SEEEEEHHHHH....... CS ResIII 71 kkfeskkiefekkniavakkdklfgeeqkkskdkeekkkk 110 ++ s+ + e++n+ + + k++ +++ + _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 114 -RTHSDLKVGEYSNLE---------VNASWTKERWNQEFT 143 .455554444444443.........344444444444445 PP ...........................HTHHHHTTT-SEE CS ResIII 111 dkeiilttiqklhkaleeeeendeskseslealldefdvi 150 + +++++t + l++ +l +++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 144 KHQVLIMTCYVALNVLKN-----------GYLSLSDINLL 172 555555555555555444...........456677788** PP EEETGGGTTSTT.THHHHH.....---SEEEEEES CS ResIII 151 iiDEaHrlsakkkyreile.....fkkafllglTA 180 ++DE+H + ++ yrei++ + + +lglTA _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 173 VFDECHLAILDHPYREIMKlcencPSCPRILGLTA 207 *******************9998855667899999 PP == domain 2 score: -4.0 bits; conditional E-value: 5.9 HHHHH................................... CS ResIII 99 kkskdkeekkkkdkeiilttiqklhkaleeeeend.esks 137 +ks+ + +k++ +++++ + kl ++ eee+e++ + ++ _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1390 DKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEeSLMW 1429 4444444444555556666667888887776666633333 PP .H CS ResIII 138 .e 138 + _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1430 rA 1431 53 PP >> dsrm Double-stranded RNA binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 1.7e-06 0.0031 14 67 .] 1860 1912 .. 1853 1912 .. 0.82 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 1.7e-06 SCCEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEESSHH CS dsrm 14 kppnyeyvseegpphslkkFtvtvkvngklygtGvgssKK 53 ++p++ s + + + k +vtv+v gk +Gvg+s + _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1860 MEPETAKFSPAERTYD-GKVRVTVEVVGKGKFKGVGRSYR 1898 5666666666677777.7899*****998888******** PP HHHHHHHHHHHHHH CS dsrm 54 eAeqlAAekALqkL 67 A+++AA++AL+ L _endoribonuclease_Dicer_isoform_1_[Homo_sapiens]gi|618468591|ref|NP_001278557.1 1899 IAKSAAARRALRSL 1912 ***********987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1922 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 608 (0.0409952); expected 296.6 (0.02) Passed bias filter: 261 (0.0175983); expected 296.6 (0.02) Passed Vit filter: 40 (0.00269705); expected 14.8 (0.001) Passed Fwd filter: 8 (0.000539411); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.65 # Mc/sec: 7718.55 // Query: dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 [L=1965] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-40 137.5 0.6 5.6e-23 81.5 0.0 6.7 7 Ribonuclease_3 Ribonuclease III domain 6.8e-22 77.7 4.1 6.2e-13 48.8 0.0 4.7 4 Ribonucleas_3_3 Ribonuclease-III-like 1.5e-14 54.2 4.0 1.5e-14 54.2 2.8 7.4 8 ResIII Type III restriction enzyme, res subunit 6.7e-12 45.0 0.1 3.9e-11 42.6 0.0 2.3 2 Helicase_C Helicase conserved C-terminal domain 6e-08 32.3 2.2 9.8e-07 28.4 1.5 2.9 1 DEAD DEAD/DEAH box helicase 1.1e-06 28.3 0.1 3.5e-06 26.6 0.0 2.0 1 Dicer_dimer Dicer dimerisation domain Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.6 0.1 3 7.3e+03 45 101 .. 330 389 .. 320 389 .. 0.57 2 ? -9.2 5.4 6 1.5e+04 34 52 .. 619 637 .. 497 730 .. 0.65 3 ? 2.1 0.3 0.1 2.6e+02 41 110 .. 871 948 .. 853 956 .. 0.65 4 ? -2.1 0.1 2 5e+03 48 71 .. 1329 1360 .. 1306 1416 .. 0.56 5 ! 64.4 0.1 4.7e-21 1.2e-17 1 113 [. 1455 1613 .. 1455 1614 .. 0.78 6 ? -3.9 0.1 6 1.5e+04 29 47 .. 1699 1717 .. 1686 1738 .. 0.49 7 ! 81.5 0.0 2.3e-26 5.6e-23 1 113 [. 1750 1862 .. 1750 1863 .. 0.90 Alignments for each domain: == domain 1 score: -2.6 bits; conditional E-value: 3 HHHHHTTTCHC.HHBHHHHHHSTT--T.........SSSS CS Ribonuclease_3 45 arlakklglps.ylresefdppknwlp.........lnkd 74 ++l+ + l+ ++++++++ +k +++ ++k+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 330 SELCTN--LDAnFVKYNIEESKKYIKEaticveeygEEKN 367 556665..43337777777777777776666543322222 PP S.SC...............TSHHHHHH CS Ribonuclease_3 75 langkgrqsisydlkeqsiadkvladv 101 ++ + +++ l+eq i +k ++d+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 368 IQ-----ERANQFLQEQIIGEKWISDI 389 22.....23344555888999988885 PP == domain 2 score: -9.2 bits; conditional E-value: 6 HHHHHTSHHHHHHHHHTTT CS Ribonuclease_3 34 lrsklvsnenlarlakklg 52 s++++n+n + ++++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 619 QNSEFTQNDNFEFAEEEYR 637 2333333333333333333 PP == domain 3 score: 2.1 bits; conditional E-value: 0.1 HHHHHHHHHT...TTCHCHHBHHHHHHSTT--T....... CS Ribonuclease_3 41 nenlarlakk...lglpsylresefdppknwlp....... 70 ++++a + + + +++ylr+ ++++++++ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 871 ACFQAVIILYrqyKIFDQYLRNISQKIQNSQSEkseslfe 910 555554444311133799*********9999998877643 PP SSSSS.SC...............TSHHHHHHHHHHHHHHH CS Ribonuclease_3 71 lnkdlangkgrqsisydlkeqsiadkvladvvEAliGaiy 110 +kd++ ++ +y ++ ++++k +++++G ++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 911 DEKDEKL--TKILQKYCKSYVDVKQKCKMYYFQSVMGECF 948 2333333..3344455555777777777777777777655 PP == domain 4 score: -2.1 bits; conditional E-value: 2 HHTTTCHCHHBHHHHHHSTT--T........S CS Ribonuclease_3 48 akklglpsylresefdppknwlp........l 71 +++++lp+++ + +++++n++ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1329 FQQIRLPKFFDKAYQRIKNNNKTscsynldqI 1360 33455666666666666666655433322220 PP == domain 5 score: 64.4 bits; conditional E-value: 4.7e-21 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 er+efLGD vlk++ +t+++ ++p+ e++l+ r+ +++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1455 ERYEFLGDTVLKCLSSTQIYFEHPKSMEDHLHVHRTIIIQ 1494 8*************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T.......... CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp.......... 70 n+nla++a k+++ +y+ +s+ ++ p dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1495 NRNLAQIAVKKKIFKYILSSKIETLS---Pigikyeiavd 1531 ******************98888865...34558999988 PP .......................SSSSS.SC......... CS Ribonuclease_3 71 .......................lnkdlangk........ 79 + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1532 ddeqnqfqkekepdeydkadqrnK-------Nkkgneedg 1564 887777666666665555554440.......045555555 PP .............................TSHHHHHHHHH CS Ribonuclease_3 80 ...........grqsisydlk....eqsiadkvladvvEA 104 ++++i + l+ ++i+ k+lad++E+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1565 daeneeieeqqQQNDIPNLLRleptYRHIKGKTLADTLES 1604 55555555444667777777777888999*********** PP HHHHHHHHT CS Ribonuclease_3 105 liGaiylds 113 +iG+ + ++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1605 IIGVFFQQK 1613 ****99875 PP == domain 6 score: -3.9 bits; conditional E-value: 6 HHHHHHHHHHTSHHHHHHH CS Ribonuclease_3 29 gklsklrsklvsnenlarl 47 +kl+++ +++ ++en+ ++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1699 NKLHQINNAIQKKENQGTF 1717 3444444444444444332 PP == domain 7 score: 81.5 bits; conditional E-value: 2.3e-26 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 +rLefLGDavl+l+i++ylf+++p+ ++g+l++++++lv+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1750 QRLEFLGDAVLDLIIVEYLFNKFPNSDPGELTQMKTSLVQ 1789 7*************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--TSSSSS.SC.. CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlplnkdlangkg 80 n++l+ + +g++++++ s+++ ++ ++ l+++ + g dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1790 NKTLCLINLMKGFYKFIIGSIQHNKEEIELLLNNVEMFMG 1829 ******************9888888777764444444448 PP .............TSHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 81 rqsisydlkeqsiadkvladvvEAliGaiylds 113 ++s yd +++ k+l+dv+E+l+Gai++d+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1830 DTSLMYDTTYNQSLIKTLGDVIESLVGAIFIDN 1862 88999999999999*****************97 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.2 0.1 0.73 1.8e+03 29 75 .. 130 177 .. 128 197 .. 0.57 2 ! 24.5 0.1 8.3e-09 2e-05 16 82 .. 1448 1515 .. 1436 1524 .. 0.85 3 ? 1.1 0.0 0.14 3.5e+02 62 110 .. 1568 1612 .. 1544 1620 .. 0.73 4 ! 48.8 0.0 2.5e-16 6.2e-13 20 126 .. 1747 1879 .. 1736 1881 .. 0.75 Alignments for each domain: == domain 1 score: -1.2 bits; conditional E-value: 0.73 Ribonucleas_3_3 29 GdavLelvvseyllekakk.degeltkklaslvseeslae 67 G+ +++ ++++y+++k+kk +++++ la+ v+ + ++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 130 GKTMIATMLINYFFQKQKKaPQKKKIIFLANTVQLVKQQY 169 7778889999999999655234455555555444333333 PP Ribonucleas_3_3 68 iakelgLg 75 + +L+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 170 AEIKNNLQ 177 33333333 PP == domain 2 score: 24.5 bits; conditional E-value: 8.3e-09 Ribonucleas_3_3 16 ngrkgyNerLefLGdavLe.lvvseyllekakkdegeltk 54 n+++++ er efLGd vL+ l+++++++e++k e l dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1448 NNKESSLERYEFLGDTVLKcLSSTQIYFEHPKSMEDHLHV 1487 5567889************445667889************ PP Ribonucleas_3_3 55 klaslvseeslaeiakelgLgkvlrlrk 82 ++ ++++++la+ia + ++ k+++ +k dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1488 HRTIIIQNRNLAQIAVKKKIFKYILSSK 1515 ********************99998765 PP == domain 3 score: 1.1 bits; conditional E-value: 0.14 Ribonucleas_3_3 62 eeslaeiakelgLgkvlrlrkgeeetessgrekvladale 101 +e+++e ++ ++ ++lrl+ t ++ + k lad+le dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1568 NEEIEEQQQQNDIPNLLRLEP----TYRHIKGKTLADTLE 1603 567777777888888888855....4444455689***** PP Ribonucleas_3_3 102 AliGAiyld 110 ++iG + + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1604 SIIGVFFQQ 1612 ****76655 PP == domain 4 score: 48.8 bits; conditional E-value: 2.5e-16 Ribonucleas_3_3 20 gyNerLefLGdavLelvvseyllek.akkdegeltkklas 58 +N+rLefLGdavL+l+++eyl++k ++ d gelt++++s dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1747 LCNQRLEFLGDAVLDLIIVEYLFNKfPNSDPGELTQMKTS 1786 47***********************445678********* PP Ribonucleas_3_3 59 lvseeslaeiakelg...................Lgkv.l 78 lv++++l i g L++v + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1787 LVQNKTLCLINLMKGfykfiigsiqhnkeeiellLNNVeM 1826 *****88776666666688888888888888897777634 PP Ribonucleas_3_3 79 rlrkgeee...tessgrekvladaleAliGAiyldkG..a 113 ++++++ + t ++++ k l+d++e+l+GAi++d+ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1827 FMGDTSLMydtTYNQSLIKTLGDVIESLVGAIFIDNNldY 1866 55554444111555566679***************96225 PP Ribonucleas_3_3 114 eeakefveekilk 126 e +k++v+e +++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1867 EITKKIVMETLFA 1879 6678888877765 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.7 1.0 3.6 8.8e+03 79 108 .. 19 48 .. 3 84 .. 0.48 2 ! 54.2 2.8 6.2e-18 1.5e-14 4 182 .. 105 312 .. 97 314 .. 0.67 3 ? -18.0 14.7 6 1.5e+04 69 125 .. 604 657 .. 463 703 .. 0.62 4 ? -0.5 0.8 0.36 9e+02 48 107 .. 871 932 .. 854 945 .. 0.59 5 ? -1.1 0.2 0.57 1.4e+03 78 133 .. 1215 1274 .. 1197 1356 .. 0.67 6 ? -3.6 1.1 3.4 8.4e+03 101 118 .. 1538 1555 .. 1491 1582 .. 0.52 7 ? -4.6 0.9 6 1.5e+04 70 90 .. 1708 1728 .. 1692 1752 .. 0.43 8 ? -3.3 0.6 2.6 6.4e+03 51 97 .. 1904 1952 .. 1895 1965 .] 0.50 Alignments for each domain: == domain 1 score: -3.7 bits; conditional E-value: 3.6 .GEEEESSS-B---SEEEEEHHHHH..... CS ResIII 79 efekkniavakkdklfgeeqkkskdkeekk 108 + ++ +++ ak+ ++f ++ ++s+d++e++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 19 NSQQDSVIFAKNTENFLKSDSSSSDQDEEF 48 222333333333333333333333333322 PP == domain 2 score: 54.2 bits; conditional E-value: 6.2e-18 E-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHHHH CS ResIII 4 lrpyQeeaienllesiekedekkrglivmaTGtGKTlvaa 43 +r+yQ+e +n + k+ +i ++TG+GKT++a+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 105 IRNYQKELFKN--------SYSKNSIIYLETGAGKTMIAT 136 44445444444........457899*************** PP HHHHHH-S.........-EEEEESSHHHHHHHHHHG.... CS ResIII 44 sliarlar.........kflflvprkelleqaleef.... 70 li ++++ k++fl+++ +l++q + e+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 137 MLINYFFQkqkkapqkkKIIFLANTVQLVKQQYAEIknnl 176 ************************************7666 PP .........GGGTGG...GEEEESS.S-B---SEEEEEHH CS ResIII 71 .........kkfeskkiefekknia.vakkdklfgeeqkk 100 +k+ s+ +f ++ + +e+ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 177 qrisemmenDKEISQILKF----QEgINYRRIFEKENHIV 212 6666433332222222222....22122333222333333 PP HHH..................................... CS ResIII 101 skdkeekkkkdkeiilttiqklhkaleeeeendesks... 137 + + k+k++ +i +t qk+ le+ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 213 KCHGSYKQKDNLQIETFTKQKWDYLLENY-------Eifv 245 33444555666666677777777666652.......0344 PP ..........HTHHHHTTT-SEEEEETGGGTTSTT.THHH CS ResIII 138 ..........eslealldefdviiiDEaHrlsakkkyrei 167 + + + +vii DE+H++ +++ y i dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 246 migqvllnglRRGYIRIEDIEVIIYDECHHTRQDHPYCLI 285 556678888755566666777**************96666 PP HH............---SEEEEEESS- CS ResIII 168 le............fkkafllglTATp 182 + ++ +++ glTA p dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 286 QYefyhfhkrrneqVQLPKIYGLTASP 312 555555555555566777788999877 PP == domain 3 score: -18.0 bits; conditional E-value: 6 HGGGGTGG...GEEEESSS-B---SEEEEEHHHHH..... CS ResIII 69 efkkfeskkiefekkniavakkdklfgeeqkkskdkeekk 108 +f++ ++k+ + ++ ++++ +++++f++ +++ ++++k dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 604 NFQDRKKKNLNKNQYQNSEFTQNDNFEFAEEEYRQQQMK- 642 233333333333333333333333333333333333222. PP ................. CS ResIII 109 kkdkeiilttiqklhka 125 ++++i ++i k + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 643 --QESLISSQINKEEDI 657 ..333333333333333 PP == domain 4 score: -0.5 bits; conditional E-value: 0.36 HH-S-EEEEESSHHHHHHHHHHG.GGGTGG....GEEEES CS ResIII 48 rlarkflflvprkelleqaleef.kkfeskki.efekkni 85 ++++ +++l + ++ +q l+++ +k+++++ + e+++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 871 ACFQAVIILYRQYKIFDQYLRNIsQKIQNSQSeKSESLFE 910 4555899999999999999999963333332202233333 PP SS-B---SEEEEEHHHHH.... CS ResIII 86 avakkdklfgeeqkkskdkeek 107 +++++ + + ++++ ++ + k dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 911 DEKDEKLTKILQKYCKSYVDVK 932 3444444444555555555444 PP == domain 5 score: -1.1 bits; conditional E-value: 0.57 ..GEEEESS....S-B---SEEEEEHHHHH.......... CS ResIII 78 iefekknia....vakkdklfgeeqkkskdkeekkkkdke 113 +e+ +k+++ +++ k++++ +++++ +e +++++++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1215 YEEIQKEYQqvptGKDPFKQIKQLKAQVELEEVSFTSNEN 1254 4333333332212444445556666677777788888888 PP .................... CS ResIII 114 iilttiqklhkaleeeeend 133 +++ ++q ++k l+++ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1255 HMVLQVQLFTKHLRSQTNLY 1274 88888888888777655544 PP == domain 6 score: -3.6 bits; conditional E-value: 3.4 HHH............... CS ResIII 101 skdkeekkkkdkeiiltt 118 +++++e ++ dk + + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1538 FQKEKEPDEYDKADQRNK 1555 222222222222221111 PP == domain 7 score: -4.6 bits; conditional E-value: 6 GGGGTGG...GEEEESSS-B- CS ResIII 70 fkkfeskkiefekkniavakk 90 ++k e++ + ++ +i+++++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1708 IQKKENQGTFEKIDQISKENQ 1728 222222222221111111111 PP == domain 8 score: -3.3 bits; conditional E-value: 2.6 S....-EEEEESSHHHHHHHHHHGGGGTGG...GEEEESS CS ResIII 51 r....kflflvprkelleqaleefkkfeskkiefekknia 86 + k+ ++ +++++ e ++ f ++s+ + e ++ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1904 KkefgKVSLIEDETDIKEGKKRFF--IQSEDNNKEVSFEV 1941 234447777777777777777777..44444444444444 PP S-B---SEEEE CS ResIII 87 vakkdklfgee 97 a+++ +++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 1942 YAYDQIDAIDQ 1952 44443333333 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.0 1.3 3.2e+03 9 31 .. 210 231 .. 205 238 .. 0.73 2 ! 42.6 0.0 1.6e-14 3.9e-11 12 74 .. 676 738 .. 667 741 .. 0.90 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 1.3 -EEEESTTSTHHHHHHHHHHHHT CS Helicase_C 9 kvailhgelpqnereeileqfna 31 +++++hg+ +q+++++i f++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 210 HIVKCHGSYKQKDNLQIE-TFTK 231 57899*******998874.4555 PP == domain 2 score: 42.6 bits; conditional E-value: 1.6e-14 EESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTT CS Helicase_C 12 ilhgelpqnereeileqfnagkskvlvatnvaerGidlpd 51 ++ + + +++ e +e f++++ +++++t+v e+G d+p+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 676 LVNLDFEVSKQSENIEAFRKKELQIILSTSVTEEGFDIPS 715 556667778999**************************** PP EEEEEESSSSSSHHHHHHHHTTS CS Helicase_C 52 vnvVinfdlprsvtsyiQriGRt 74 +n+Vi f+ + s++Q+ GR+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 716 CNLVISFNKISNLKSFVQIKGRA 738 **********************5 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.4 1.5 4e-10 9.8e-07 2 133 .. 107 278 .. 106 315 .. 0.71 Alignments for each domain: == domain 1 score: 28.4 bits; conditional E-value: 4e-10 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHH...HH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx RF DEAD 2 piQaeaiplilgggdvlvaaeTGsGKTlaflipvi...qi 38 ++Q+e +++ ++ ++ ++ eTG+GKT+++ + + q+ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 107 NYQKELFKNSYS-KNSIIYLETGAGKTMIATMLINyffQK 145 579999999996.999*************99855412244 PP HHHTCTT....EEEEEESSHHHHHHHHHHHHHHTTT..SS CS xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxx..xx RF DEAD 39 lletkdq....kalivaPtreLaeqtlnnlkqfkky..pk 72 ++ k++++a t +L++q++ ++k+ ++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 146 QKK---ApqkkKIIFLANTVQLVKQQYAEIKNNLQRisE- 181 444...25555*******************999988851. PP C...........................CEEEETTTSEHH CS x...........................xxxxxxxxxxxx RF DEAD 73 l...........................rvlliiggvala 85 + ++ ++g+ +++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 182 MmendkeisqilkfqeginyrrifekenHIVKCHGSYKQK 221 3444555566677777777777777665333334444422 PP HHHHHHH...........TT.-SEEEEEHHHHHHHHHTTS CS xxxxxxx...........xxxxxxxxxxxxxxxxxxxxxx RF DEAD 86 rdqlsvl...........dngvdivvgTpgrlddlvstgk 114 d+l+ +n ++i v+ + l++ +++g dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 222 -DNLQIEtftkqkwdyllEN-YEIFVMIGQVLLNGLRRGY 259 .3333334455555555355.8999999999999999988 PP SHCTTEEEEEEETHHHHHS CS xxxxxxxxxxxxxxxxxxx RF DEAD 115 lnlsqvrllVlDEadrlls 133 ++++++++++ DE+++ + dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 260 IRIEDIEVIIYDECHHTRQ 278 89999**********9877 PP >> Dicer_dimer Dicer dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.6 0.0 1.4e-09 3.5e-06 2 77 .. 808 885 .. 807 899 .. 0.79 Alignments for each domain: == domain 1 score: 26.6 bits; conditional E-value: 1.4e-09 HHHHHHHHTTSSS-TT--SS.-EEEEEE--G.-EEEEEE- CS Dicer_dimer 2 iallarYCakLpsdaftklk.pefevekeee.glvctveL 39 ++l + Y+++L + + + k p + +++ + g++c+++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 808 VNLFHTYANQLLYSYDSNIKgPFYYYIEITNvGFICQIIV 847 77889999999887777766355555555555******** PP -TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S- CS Dicer_dimer 40 PlnsplreiegkpmkskklakqsaAfkackkLyelgeL 77 P +s l+++ ++p ++k+ ak++a+f+a++ Ly+ ++ dicer-related_RNase_III_protein_Dcr2p,_putative_[Tetrahymena_thermophila_SB210]gi|586733006|gb|EDK31487.2 848 PSQSGLKTFCSNPQAQKEDAKKDACFQAVIILYRQYKI 885 ********************************975443 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1965 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 2327 (0.156901); expected 296.6 (0.02) Passed bias filter: 114 (0.0076866); expected 296.6 (0.02) Passed Vit filter: 28 (0.00188794); expected 14.8 (0.001) Passed Fwd filter: 6 (0.000404558); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.81u 0.21s 00:00:01.02 Elapsed: 00:00:00.55 # Mc/sec: 9326.00 // Query: Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 [L=1275] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-28 98.0 1.0 1.4e-14 54.4 0.1 5.9 4 Ribonuclease_3 Ribonuclease III domain 1.5e-10 41.1 5.2 5e-05 23.2 0.1 4.2 3 Ribonucleas_3_3 Ribonuclease-III-like Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -23.3 18.0 2 1.5e+04 102 102 .. 471 471 .. 212 635 .. 0.63 2 ! 51.9 0.0 1.2e-17 9e-14 2 113 .. 753 861 .. 752 862 .. 0.93 3 ? -1.1 0.1 0.33 2.5e+03 80 98 .. 926 945 .. 868 1001 .. 0.61 4 ! 54.4 0.1 1.9e-18 1.4e-14 2 113 .. 1049 1162 .. 1048 1163 .. 0.85 Alignments for each domain: == domain 1 score: -23.3 bits; conditional E-value: 2 H CS Ribonuclease_3 102 v 102 + Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 471 F 471 1 PP == domain 2 score: 51.9 bits; conditional E-value: 1.2e-17 HHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSH CS Ribonuclease_3 2 rLefLGDavlklaittylfetypdlhegklsklrsklvsn 41 Le +GD v+k++ + yl+ + p+ +e+ l+ +r+ +++n Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 753 LLEVIGDVVIKYISSLYLYLHLPNQSENALTMIRTIFINN 792 69************************************** PP HHHHHHHHTTTCHCHHBHHHHHHSTT--TSSSSS.SC... CS Ribonuclease_3 42 enlarlakklglpsylresefdppknwlplnkdlangkgr 81 + l a + gl+ y++ + +++ + l n +++ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 793 KYLGISAFRNGLQFYVQTKRPSSYDWRFN----LFNLNSF 828 ************99999888888888877....8888899 PP .............TSHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 82 qsisydlk.eqsiadkvladvvEAliGaiylds 113 +++ +d+k + + + + l+d++E+++G+ y ++ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 829 TEAPQDQKqSFQLSYSNLSDTLESVVGCFYASN 861 99999999999999****************986 PP == domain 3 score: -1.1 bits; conditional E-value: 0.33 ...............TSHHH CS Ribonuclease_3 80 grqsisydlk.eqsiadkvl 98 ++ +i+ ++k eq+ ++k+ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 926 KEFEIQANKKmEQCFEEKIQ 945 22333334444555555554 PP == domain 4 score: 54.4 bits; conditional E-value: 1.9e-18 HHHHHHHHHHHHHHHHHHHH....HSTTS.SHHHHHHHHH CS Ribonuclease_3 2 rLefLGDavlklaittylfe....typdl.hegklsklrs 36 LefLGDa+++++++++ ++ + +++ ++ +++++s Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 1049 ILEFLGDALIEILVVSHGYHisrnRQKKInSPYFFCEMKS 1088 69*****************977654466656********* PP HHTSHHHHHHHHHTTTCHCHHBHHHHHHSTT--TSSSSS. CS Ribonuclease_3 37 klvsnenlarlakklglpsylresefdppknwlplnkdla 76 l sn++++r+a+ +++ y + ++ ++ + ++ +d++ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 1089 LLLSNDFMSRMAILNKFHYYALNISKYQQDEIIQFIEDCN 1128 *************999999999888888888888999999 PP SC...............TSHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 77 ngkgrqsisydlkeqsiadkvladvvEAliGaiylds 113 +++++++ ++q ++kvl+d++E+++Gai +ds Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 1129 LNTKFKES---VSHQANSPKVLGDLWESVAGAIIMDS 1162 88866554...3356678*****************98 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.5 0.1 0.31 2.3e+03 40 76 .. 29 64 .. 10 111 .. 0.63 2 ! 17.2 0.0 4.9e-07 0.0036 12 111 .. 743 861 .. 732 873 .. 0.72 3 ! 23.2 0.1 6.7e-09 5e-05 1 117 [. 1024 1168 .. 1024 1178 .. 0.64 Alignments for each domain: == domain 1 score: -1.5 bits; conditional E-value: 0.31 Ribonucleas_3_3 40 yllekakkdegeltkklaslvseeslaeiakelgLgk 76 ++++k d+g++ k+l+++ +++ +i +++L++ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 29 KKTKQKKIDKGQSKKRLTAIK-QKQGYDIKMDMQLSQ 64 234445556666666665554.444455555555554 PP == domain 2 score: 17.2 bits; conditional E-value: 4.9e-07 Ribonucleas_3_3 12 kSyangrkgyNerLefLGdavLelvvseyllek.akkdeg 50 Sy ++++ e Le++Gd v++ ++s yl+ + ++++e Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 743 ISY--SKTKNLELLEVIGDVVIKYISSLYLYLHlPNQSEN 780 344..467899**************999987664889999 PP Ribonucleas_3_3 51 eltkklaslvseeslaeiakelgLgkvlrl.......... 80 lt ++ +++++ l a + gL+ +++ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 781 ALTMIRTIFINNKYLGISAFRNGLQFYVQTkrpssydwrf 820 999999999******9999999988888876666666666 PP Ribonucleas_3_3 81 ........rkgeeetessgrek..vladaleAliGAiyld 110 + ++++++s + + l+d+le+++G y Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 821 nlfnlnsfTEAPQDQKQSFQLSysNLSDTLESVVGCFYAS 860 6666655544444444444433347788888888877766 PP Ribonucleas_3_3 111 k 111 + Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 861 N 861 5 PP == domain 3 score: 23.2 bits; conditional E-value: 6.7e-09 Ribonucleas_3_3 1 deelllqaltHkSyangrk..gyNerLefLGdavLelvvs 38 d++ll +al S +n ++ + ++ LefLGda++e++v+ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 1024 DKSLLIKALNCHSNSNFEHyfQDYQILEFLGDALIEILVV 1063 68999999998888876554588*************7655 PP Ribonucleas_3_3 39 e..yllekakkdege....ltkklaslvseeslaeiakel 72 y + + ++++ + ++++ l+s++ ++++a Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 1064 ShgYHISRNRQKKINspyfFCEMKSLLLSNDFMSRMAILN 1103 5133344444444445555234444466666666666554 PP Ribonucleas_3_3 73 g.................Lgkvlrl.......rkgeee.t 87 + + k +e+ + Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 1104 KfhyyalniskyqqdeiiQ-----FiedcnlnTKFKESvS 1138 4445555555666555440.....2444444444444426 PP Ribonucleas_3_3 88 essgrekvladaleAliGAiyldkGaeeak 117 + + kvl+d+ e++ GAi +d+++++ Dicer-related_RNase_III_protein_Dcl1p_[Tetrahymena_thermophila]gi|50897087|dbj|BAD34724.1 1139 HQANSPKVLGDLWESVAGAIIMDSDISTFV 1168 6667788****************9987765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1275 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 2516 (0.169645); expected 296.6 (0.02) Passed bias filter: 126 (0.00849572); expected 296.6 (0.02) Passed Vit filter: 10 (0.000674263); expected 14.8 (0.001) Passed Fwd filter: 2 (0.000134853); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.55u 0.20s 00:00:00.75 Elapsed: 00:00:00.53 # Mc/sec: 6279.57 // Query: Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 [L=2249] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-60 202.7 0.0 3.9e-35 120.7 0.0 3.1 2 Ribonuclease_3 Ribonuclease III domain 2.5e-37 127.1 0.0 7.2e-37 125.7 0.0 1.8 1 PAZ PAZ domain 3.7e-29 100.3 0.2 3.7e-28 97.1 0.0 2.6 2 Dicer_dimer Dicer dimerisation domain 3.2e-26 91.7 0.2 6.7e-16 58.4 0.0 4.5 3 Ribonucleas_3_3 Ribonuclease-III-like 1.3e-17 63.3 0.0 3.3e-17 62.1 0.0 1.7 1 Helicase_C Helicase conserved C-terminal domain Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 120.7 0.0 1.3e-38 3.9e-35 1 114 [] 1742 1919 .. 1742 1919 .. 0.92 2 ! 78.8 0.0 1.3e-25 3.9e-22 1 113 [. 2029 2149 .. 2029 2150 .. 0.80 Alignments for each domain: == domain 1 score: 120.7 bits; conditional E-value: 1.3e-38 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHT CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakk 50 erLe++GD++lk+aittyl+ ty+++hegkls+lrsk v n nl+rl+++ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1742 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRR 1791 8************************************************* PP TTCHCHHBHHHHHHSTT--T........SSSSS.SC.............. CS Ribonuclease_3 51 lglpsylresefdppknwlp........lnkdlangk............. 79 ++l +y+++ +f+p++nwlp l+k l ++k Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1792 KRLGEYMIATKFEPHDNWLPpcyyvpkeLEKALIEAKipthhwkladlld 1841 ************************88885555555557777778888999 PP .................................................. CS Ribonuclease_3 80 ..........................................grqsisyd 87 +++ i y+ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1842 iknlssvqicemvrekadalgleqnggaqngqlddsndscndFSCFIPYN 1891 999999999999999999999999999999999999888888889***** PP .......TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 88 lk.eqsiadkvladvvEAliGaiyldsg 114 l ++si dk++ad+vEAliGa+++++g Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1892 LVsQHSIPDKSIADCVEALIGAYLIECG 1919 ***************************8 PP == domain 2 score: 78.8 bits; conditional E-value: 1.3e-25 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHT CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakk 50 +rLefLGDavl+++it++l+e + + ++g l++lrs+lv+n+ a la + Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 2029 QRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVR 2078 7********************99999************************ PP TTCHCHHBHHHHHHSTT--T...SSSSS.SC................... CS Ribonuclease_3 51 lglpsylresefdppknwlp...lnkdlangk...........grqsisy 86 +g+++++r+ + + + + + +++ng+ + + Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 2079 HGFHKFFRHLSPGLNDVIDRfvrI--QQENGHciseeyyllseE-----E 2121 ********8777777666668441..444444555555444221.....2 PP ........TSHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 87 dlk.eqsiadkvladvvEAliGaiylds 113 + e +k l+dv+E+++Gai+lds Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 2122 CDDaEDVEVPKALGDVFESIAGAIFLDS 2149 233466678*****************98 PP >> PAZ PAZ domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 125.7 0.0 2.4e-40 7.2e-37 6 133 .. 1111 1267 .. 1100 1269 .. 0.94 Alignments for each domain: == domain 1 score: 125.7 bits; conditional E-value: 2.4e-40 HHHHCCCSSSHCCTSHHHHHHHHHTTEEEEETTSCGG..EEEEEEEEECC CS PAZ 6 flerilkqetrrqkkfrkklakalkglivlttyrnne..rkyriadisee 53 ++r +e+r+ + f + + +++++v+++yrn++ +++++a+i+++ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1111 TMPRAVPDEERQAQPF---DPQRFQDAVVMPWYRNQDqpQYFYVAEICPH 1157 5666666677777667...779**************************** PP ETTTSEEEETTTEEEEHHHHHHHCCT---SSTTSEEEEEECSSSS..... CS PAZ 54 ptpestfpdkegkeitvaeYfkkkYnielkypnqplldvkktsrr..... 98 +p s+fp + ++ t+++Y+ kY+++++++ qplldv++ts+r Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1158 LSPLSCFPGD--NYRTFKHYYLVKYGLTIQNTSQPLLDVDHTSARlnflt 1205 **********..************************************** PP ...........................SEEEE-CCCEEEETTT---S--X CS PAZ 99 ...........................qeqylppElcdivplqrslkkdf 121 q+q+l+pElc+++p+++sl++++ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1206 pryvnrkgvalptsseetkrakrenleQKQILVPELCTVHPFPASLWRTA 1255 ************************************************** PP XXXXXXXXXXXX CS PAZ 122 aaqksilyrtra 133 +++++ilyr++ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1256 VCLPCILYRING 1267 *********985 PP >> Dicer_dimer Dicer dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 97.1 0.0 1.3e-31 3.7e-28 1 89 [. 825 918 .. 825 920 .. 0.97 2 ? -0.5 0.1 0.34 1e+03 54 77 .. 2222 2245 .. 2217 2248 .. 0.89 Alignments for each domain: == domain 1 score: 97.1 bits; conditional E-value: 1.3e-31 HHHHHHHHHTTSSS-TT--SS-EEEEEE--G....-EEEEEE--TT-SS--. CS Dicer_dimer 1 aiallarYCakLpsdaftklkpefevekeee....glvctveLPlnsplre. 47 aial+++YCa+Lpsd+ftkl++ ++++++e+ +++t++LP+nspl++ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 825 AIALVNKYCARLPSDTFTKLTALWRCTRNERagvtLFQYTLRLPINSPLKHd 876 799***************************999989999************* PP EEEE--SSHHHHHHHHHHHHHHHHHHH-S-TTTS--HHHH-S CS Dicer_dimer 48 iegkpmkskklakqsaAfkackkLyelgeLndhLlPvkkerv 89 i+g pm+++ la++ aA++ac +L+++geL+d+L+P++ke + Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 877 IVGLPMPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGF 918 *************************************99976 PP == domain 2 score: -0.5 bits; conditional E-value: 0.34 SSHHHHHHHHHHHHHHHHHHH-S- CS Dicer_dimer 54 kskklakqsaAfkackkLyelgeL 77 ++ ++ak++aA a ++L + g++ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 2222 RNYRIAKCTAAKCALRQLKKQGLI 2245 5789***************99987 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.0 0.0 9.9e-09 2.9e-05 5 81 .. 1726 1801 .. 1722 1808 .. 0.80 2 ? 2.9 0.0 0.033 98 93 112 .. 1900 1919 .. 1892 1928 .. 0.77 3 ! 58.4 0.0 2.3e-19 6.7e-16 1 113 [. 2006 2151 .. 2006 2155 .. 0.88 Alignments for each domain: == domain 1 score: 24.0 bits; conditional E-value: 9.9e-09 Ribonucleas_3_3 5 llqaltHkSyangrkg.yNerLefLGdavLelvvseyll.ekakkdegel 52 +lqalt +n++ g + erLe +Gd+ L+ ++++yl+ + + eg+l Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1726 ILQALTM---SNANDGiNLERLETIGDSFLKYAITTYLYiTYENVHEGKL 1772 5666663...344444155*****************9861557779**** PP Ribonucleas_3_3 53 tkklaslvseeslaeiakelgLgkvlrlr 81 + +++ v + +l +++++ +Lg+++ Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1773 SHLRSKQVANLNLYRLGRRKRLGEYMIAT 1801 **************************874 PP == domain 2 score: 2.9 bits; conditional E-value: 0.033 Ribonucleas_3_3 93 ekvladaleAliGAiyldkG 112 +k +ad++eAliGA ++ G Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 1900 DKSIADCVEALIGAYLIECG 1919 55679*********777666 PP == domain 3 score: 58.4 bits; conditional E-value: 2.3e-19 Ribonucleas_3_3 1 deelllqaltHkSya.ngrkgyNerLefLGdavLelvvseyllekakk.d 48 d+++llqa+tH Sy n +++++rLefLGdavL+ +++++l+e++++ + Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 2006 DRSYLLQAMTHASYTpNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQhS 2055 57899*********7255589************************86626 PP Ribonucleas_3_3 49 egeltkklaslvseeslaeiakelg......................... 73 g lt +++lv+++ a +a ++g Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 2056 PGALTDLRSALVNNTIFASLAVRHGfhkffrhlspglndvidrfvriqqe 2105 799**********************99*************9999999999 PP Ribonucleas_3_3 74 .....Lgkvlrl.rkgeeetessgrekvladaleAliGAiyldkGa 113 +++ +l +++ ++ e + k l+d++e++ GAi+ld+ + Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 2106 nghciSEEYYLLsEEECDDAEDVEVPKALGDVFESIAGAIFLDSNM 2151 999976777777444455678888899***************9865 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 62.1 0.0 1.1e-20 3.3e-17 15 76 .. 544 604 .. 519 606 .. 0.93 Alignments for each domain: == domain 1 score: 62.1 bits; conditional E-value: 1.1e-20 TTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESSSSSSHHH CS Helicase_C 15 gelpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinfdlprsvts 66 +el+++ +ee+l++f+ ++++vl+ t+v+e+Gid+p++n+V+ +d+p++++s Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 544 AELEHRRQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRS 595 58999*********************************************** PP HHHHHTTSST CS Helicase_C 67 yiQriGRtgR 76 y+Q+ GR +R Dicer-1_[Drosophila_melanogaster]gi|7300916|gb|AAF56056.1 596 YVQCKGR-AR 604 *******.55 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2249 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 642 (0.0432877); expected 296.6 (0.02) Passed bias filter: 223 (0.0150361); expected 296.6 (0.02) Passed Vit filter: 33 (0.00222507); expected 14.8 (0.001) Passed Fwd filter: 5 (0.000337132); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.76u 0.19s 00:00:00.95 Elapsed: 00:00:00.57 # Mc/sec: 10121.79 // Query: Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 [L=1721] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-48 163.6 0.0 6.3e-23 81.3 0.0 2.7 2 Ribonuclease_3 Ribonuclease III domain 9.1e-31 105.5 0.2 3e-30 103.8 0.0 2.1 2 Dicer_dimer Dicer dimerisation domain 6.6e-25 87.5 0.1 1.1e-12 48.0 0.0 4.5 4 Ribonucleas_3_3 Ribonuclease-III-like 1.2e-15 57.8 0.0 2.4e-12 47.2 0.1 3.0 2 dsrm Double-stranded RNA binding motif 3e-14 52.8 0.0 7.8e-14 51.5 0.0 1.7 1 DEAD DEAD/DEAH box helicase 1.9e-12 46.8 0.0 7.3e-12 44.9 0.0 2.0 2 Helicase_C Helicase conserved C-terminal domain 1.6e-11 44.4 0.0 4.5e-11 42.9 0.0 1.8 1 ResIII Type III restriction enzyme, res subunit 4.1e-09 35.8 0.4 9.5e-09 34.6 0.3 1.6 1 PAZ PAZ domain ------ inclusion threshold ------ 0.019 15.1 0.0 0.094 12.8 0.0 2.2 1 AAA_22 AAA domain Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.6 0.0 1.4e-25 2.2e-22 1 113 [. 1209 1380 .. 1209 1381 .. 0.87 2 ! 81.3 0.0 3.8e-26 6.3e-23 1 113 [. 1468 1626 .. 1468 1627 .. 0.83 Alignments for each domain: == domain 1 score: 79.6 bits; conditional E-value: 1.4e-25 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 erLe+LGD++lkl +t yl ++y+d++eg l++ +sklvs Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1209 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVS 1248 8*************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T.......... CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp.......... 70 n+nl +++++ ++p+ l+ f+p+ wlp Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1249 NRNLLFCLIDADIPKTLNTIQFTPRYTWLPpgislphnvl 1288 ******************************9999888887 PP .........SSSSS.SC....................... CS Ribonuclease_3 71 .........lnkdlangk...................... 79 k Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1289 alwrenpefA-------Kiigphnlrdlalgdeeslvkgn 1321 7755555550.......25555555556666688888899 PP .......................................T CS Ribonuclease_3 80 ........................grqsisydlk.eqsia 94 +++s + i Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1322 csdinynrfvegcrangqsfyagaDFSSEVNFCVgLVTIP 1361 999999999999999999999988778888889999**** PP SHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 95 dkvladvvEAliGaiylds 113 +kv+ad++EAl+G+i+ ++ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1362 NKVIADTLEALLGVIVKNY 1380 **************98765 PP == domain 2 score: 81.3 bits; conditional E-value: 3.8e-26 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 + Lef+GDa+l+++i+ y+fe+++++++g l++lrs+lv+ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1468 QELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVN 1507 68************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T.......... CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp.......... 70 n++la ++ +++l+ ++ +++ ++++ + + Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1508 NTTLACICVRHRLHFFILAENAKLSEIISKfvnfqesqgh 1547 ************************9999999775544444 PP SSSSS.SC................................ CS Ribonuclease_3 71 lnkdlangk............................... 79 Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1548 R-------Vtnyvrilleeadvqptpldlddeldmtelph 1580 0.......25566666666666677788888888888888 PP ...............................TSHHHHHHH CS Ribonuclease_3 80 .................grqsisydlkeqsiadkvladvv 102 +++ +++ +k l+dv+ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1581 ankcisqeaekgvppkgEFNMSTNVD-----VPKALGDVL 1615 88888888888888886555554444.....5******** PP HHHHHHHHHHT CS Ribonuclease_3 103 EAliGaiylds 113 EAli+a+yld+ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1616 EALIAAVYLDC 1626 **********9 PP >> Dicer_dimer Dicer dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 103.8 0.0 1.8e-33 3e-30 1 90 [. 571 673 .. 571 674 .. 0.97 2 ? -4.1 0.1 8.1 1.3e+04 53 72 .. 1698 1717 .. 1677 1719 .. 0.78 Alignments for each domain: == domain 1 score: 103.8 bits; conditional E-value: 1.8e-33 HHHHHHHHHTTSSS-TT--SS-EEEEEE--G......... CS Dicer_dimer 1 aiallarYCakLpsdaftklkpefevekeee......... 31 a+a+l+rYC+++p+daf+++ p+f+v +e+e Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 571 ALAILHRYCQTIPTDAFGFVIPWFHVLQEDErdrifgvsa 610 789***************************99******** PP ..-EEEEEE--TT-SS--.EEEE--SSHHHHHHHHHHHHH CS Dicer_dimer 32 ..glvctveLPlnsplre.iegkpmkskklakqsaAfkac 68 ++v+++++P+n++lr+ i+++pm+++k+ak saAfkac Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 611 kgKHVISINMPVNCMLRDtIYSDPMDNVKTAKISAAFKAC 650 **************************************** PP HHHHHH-S-TTTS--H.HHH-S- CS Dicer_dimer 69 kkLyelgeLndhLlPv.kkerva 90 k Ly+lgeLn++++P+ kerva Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 651 KVLYSLGELNERFVPKtLKERVA 673 ****************8888875 PP == domain 2 score: -4.1 bits; conditional E-value: 8.1 -SSHHHHHHHHHHHHHHHHH CS Dicer_dimer 53 mkskklakqsaAfkackkLy 72 ++k ak saA a ++L Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1698 GSNKDQAKLSAAKHALQQLS 1717 56788999999999999986 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 0.0 6.2e-07 0.001 23 78 .. 1209 1265 .. 1195 1273 .. 0.88 2 ? 5.4 0.0 0.01 17 93 120 .. 1362 1389 .. 1359 1394 .. 0.89 3 ! 48.0 0.0 6.6e-16 1.1e-12 2 81 .. 1446 1527 .. 1445 1543 .. 0.86 4 ! 9.0 0.0 0.00073 1.2 92 110 .. 1607 1625 .. 1595 1637 .. 0.84 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 6.2e-07 Ribonucleas_3_3 23 erLefLGdavLelvvseyllekakk.degeltkklaslvs 61 erLe LGd+ L+l+ + yl k+++ +eg lt+ +++lvs Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1209 ERLEILGDSFLKLSATLYLASKYSDwNEGTLTEVKSKLVS 1248 9*****************9888655499************ PP Ribonucleas_3_3 62 eeslaeiakelgLgkvl 78 +++l + + ++ k+l Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1249 NRNLLFCLIDADIPKTL 1265 ****9998888887766 PP == domain 2 score: 5.4 bits; conditional E-value: 0.01 Ribonucleas_3_3 93 ekvladaleAliGAiyldkGaeeakefv 120 +kv+ad+leAl+G i + G+++a +++ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1362 NKVIADTLEALLGVIVKNYGLQHAFKML 1389 689******************9998775 PP == domain 3 score: 48.0 bits; conditional E-value: 6.6e-16 Ribonucleas_3_3 2 eelllqaltHkSy.angrkgyNerLefLGdavLelvvsey 40 + +llqaltH Sy n +g+++ Lef+Gda+L++++s+y Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1446 RRYLLQALTHPSYpTNRITGSYQELEFIGDAILDFLISAY 1485 67899********4456689******************** PP Ribonucleas_3_3 41 llek.akkdegeltkklaslvseeslaeiakelgLgkvlr 79 ++e+ +k++ g lt +++lv++++la i +++L +++ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1486 IFENnTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1525 **993455789******************99999988877 PP Ribonucleas_3_3 80 lr 81 + Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1526 AE 1527 64 PP == domain 4 score: 9.0 bits; conditional E-value: 0.00073 Ribonucleas_3_3 92 rekvladaleAliGAiyld 110 k l+d+leAli+A+yld Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1607 VPKALGDVLEALIAAVYLD 1625 56789*************8 PP >> dsrm Double-stranded RNA binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.3 0.0 0.0043 7 49 67 .] 634 653 .. 575 653 .. 0.86 2 ! 47.2 0.1 1.4e-15 2.4e-12 1 67 [] 1652 1716 .. 1652 1716 .. 0.98 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0043 ES.SHHHHHHHHHHHHHHHH CS dsrm 49 gs.sKKeAeqlAAekALqkL 67 + + K A+ +AA kA+++L Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 634 PMdNVKTAKISAAFKACKVL 653 4449*************987 PP == domain 2 score: 47.2 bits; conditional E-value: 1.4e-15 HHHHHHHHHHHTTSCCEEEEEEEESSTSSSE.EEEE...E CS dsrm 1 pkskLqelcqkkgkppnyeyvseegpphslk.kFtv...t 36 p++++++l+++k+ +p++ ++++eg + + +Ft+ t Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1652 PINHIRQLVEHKHAKPVFSSPIVEGETVMVScQFTCmekT 1691 89****************************9*****9999 PP EEETTEEEEEEEESSHHHHHHHHHHHHHHHH CS dsrm 37 vkvngklygtGvgssKKeAeqlAAekALqkL 67 +kv +G+gs+K++A+ +AA++ALq+L Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 1692 IKV------YGFGSNKDQAKLSAAKHALQQL 1716 999......********************98 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.5 0.0 4.7e-17 7.8e-14 8 138 .. 16 152 .. 9 179 .. 0.77 Alignments for each domain: == domain 1 score: 51.5 bits; conditional E-value: 4.7e-17 HHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx. RF DEAD 8 iplilgggdvlvaaeTGsGKTlaflipviqillet.kdq. 45 ++++ +++ +v +TGsGKT ++++ v++++ + + + Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 16 VDHLT-KSNGIVYLPTGSGKTFVAIL-VLKRFSQDfD-Kp 52 55444.588899***********987.6777877644.35 PP ......EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEET CS ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 ......kalivaPtreLaeqtlnnlkqfkkypklrvllii 79 +al+++ t eLa+q++ ++++++ +v ++ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 53 iesggkRALFMCNTVELARQQAMAVRRCTNF---KVGFYV 89 999999***********************87...999999 PP TTSEHHHHHHHHH....TT.-SEEEEEHHHHHHHHHTTSS CS xxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx RF DEAD 80 ggvalardqlsvl....dngvdivvgTpgrlddlvstgkl 115 g++ + d ++ + ++ +++vgT + ++d+v ++ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 90 GEQGVD-DWTRGMwsdeIKKNQVLVGTAQVFLDMVTQTYV 128 988766.44444446775668***************9988 PP HCTTEEEEEEETHHHHHST.TTHH CS xxxxxxxxxxxxxxxxxxx.xxxx RF DEAD 116 nlsqvrllVlDEadrllsq.gfsd 138 ls+++++++DE+++ f++ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 129 ALSSLSVVIIDECHHGTGHhPFRE 152 *************98666524444 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 44.9 0.0 4.4e-15 7.3e-12 20 74 .. 441 495 .. 433 498 .. 0.92 2 ? -4.3 0.0 9 1.5e+04 17 34 .. 907 924 .. 905 932 .. 0.83 Alignments for each domain: == domain 1 score: 44.9 bits; conditional E-value: 4.4e-15 HHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESS CS Helicase_C 20 nereeileqfnagkskvlvatnvaerGidlpdvnvVinfd 59 + ++ ++qf++g+ + +++++v+e+Gid++++n+V+++d Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 441 KWQKSAIQQFRDGNANLMICSSVLEEGIDVQACNHVFILD 480 567899********************************** PP SSSSHHHHHHHHTTS CS Helicase_C 60 lprsvtsyiQriGRt 74 + ++ y+Q GR+ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 481 PVKTFNMYVQSKGRA 495 **************5 PP == domain 2 score: -4.3 bits; conditional E-value: 9 STHHHHHHHHHHHHTTSS CS Helicase_C 17 lpqnereeileqfnagks 34 +++n+++++ +f+ +k+ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 907 MEKNQQDKTYYEFTMSKY 924 8999****9999999887 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.9 0.0 2.7e-14 4.5e-11 2 179 .. 6 172 .. 5 176 .. 0.73 Alignments for each domain: == domain 1 score: 42.9 bits; conditional E-value: 2.7e-14 -EE-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHH CS ResIII 2 lklrpyQeeaienllesiekedekkrglivmaTGtGKTlv 41 +k+r yQ + ++ l k +g++ ++TG+GKT+v Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 6 IKPRGYQLRLVDHLT--------KSNGIVYLPTGSGKTFV 37 566777777777776........679************** PP HHHHHHHH-S............-EEEEESSHHHHHHHHHH CS ResIII 42 aasliarlar............kflflvprkelleqalee 69 a+ l+++ ++ ++lf +++ el q + Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 38 AI-LVLKRFSqdfdkpiesggkRALFMCNTVELARQQAMA 76 **.555555559999***********************99 PP GGGGTGG...GEEEESSS-B---SEEEEEHHHHH...... CS ResIII 70 fkkfeskkiefekkniavakkdklfgeeqkkskdkeekkk 109 +++f+ ++ +++ + + +++e Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 77 V----RRCTNFKVGFY----VGEQGVDDWTRGMWSDE--I 106 9....55555544444....44334444444444334..4 PP ............................HTHHHHTTT-SE CS ResIII 110 kdkeiilttiqklhkaleeeeendeskseslealldefdv 149 k++++++ t+q + +++ l v Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 107 KKNQVLVGTAQVFLDMVTQ-----------TYVALSSLSV 135 6789999999999988764...........556677899* PP EEEETGGGTTSTT.THHHHH.......---SEEEEEE CS ResIII 150 iiiDEaHrlsakkkyreile.......fkkafllglT 179 +iiDE+H+ + + +re ++ k + ++glT Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 136 VIIDECHHGTGHHPFREFMRlftianqTKLPRVVGLT 172 **********999988887766654444444446665 PP >> PAZ PAZ domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.6 0.3 5.7e-12 9.5e-09 4 130 .. 848 997 .. 844 999 .. 0.84 Alignments for each domain: == domain 1 score: 34.6 bits; conditional E-value: 5.7e-12 HHHHHHCCCSSSHCCTSHHHH......HHHHHTTEEEEET CS PAZ 4 leflerilkqetrrqkkfrkk......lakalkglivltt 37 + +++r++++ +++ +++ +++ g iv+ + Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 848 MTNFRRLPQSHGSNV---QQReqqpapRPEDFEGKIVTQW 884 333444444333333...33333477799*********** PP TSCGGEEEEEEEEECCETTTSEEEETTTEEEEHHHHHHHC CS PAZ 38 yrnnerkyriadiseeptpestfpdkegkeitvaeYfkkk 77 y n ++ ++++++e tp s +++ ++ t++e+ k Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 885 YANYDKPMLVTKVHRELTPLSYMEKN-QQDKTYYEFTMSK 923 **************************.************* PP CT---S...STTSEEEEEECSSSS................ CS PAZ 78 Ynielk...ypnqplldvkktsrr................ 98 Y+ ++ +++ ++ v+ + + Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 924 YGNRIGdvvHKDKFMIEVRDLTEQltfyvhnrgkfnaksk 963 **99861215799*******9999**************** PP ..SEEEE-CCCEEEETTT---S--XXXXXXXXXX CS PAZ 99 ..qeqylppElcdivplqrslkkdfaaqksilyr 130 +++l+pElc+ +++ l+ + ++sil r Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 964 akMKVILIPELCFNFNFPGDLWLKLIFLPSILNR 997 **********************999999998765 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 5.7e-05 0.094 4 120 .. 21 168 .. 17 173 .. 0.74 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 5.7e-05 AAA_22 4 agilvvtGesGvGKTtlarrlaeqldevaeaae...karv 40 ++ ++v+ ++G+GKT++a +++++ + + +r+ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 21 KSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIesgGKRA 60 66789999*************9999876665558995555 PP AAA_22 41 vfveapsst.spkellkkllralglpakg........... 68 +f+ + + +++++ + + +++++ Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 61 LFMCNTVELaRQQAMAVRRCTNFKVGFYVgeqgvddwtrg 100 5444444443777778888888887776687788888888 PP AAA_22 69 ...........rltteell.eallralrrrrv.glliiDE 95 +t++++ ++++++ + + ++iiDE Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 101 mwsdeikknqvLVGTAQVFlDMVTQTYVALSSlSVVIIDE 140 888887777774444444447777777777779******* PP AAA_22 96 aqhLr...seelleelrdlldetgvklv 120 +h + + + + l +++++t+++ v Dicer-2,_isoform_B_[Drosophila_melanogaster]gi|599127081|gb|AHN56336.1 141 CHHGTghhPFREFMRLFTIANQTKLPRV 168 ***6556548888888899999998865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1721 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 584 (0.039377); expected 296.6 (0.02) Passed bias filter: 314 (0.0211719); expected 296.6 (0.02) Passed Vit filter: 33 (0.00222507); expected 14.8 (0.001) Passed Fwd filter: 9 (0.000606837); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.75 # Mc/sec: 5989.84 // Query: Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 [L=1722] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-48 163.6 0.0 6.3e-23 81.3 0.0 2.7 2 Ribonuclease_3 Ribonuclease III domain 9e-31 105.5 0.2 3e-30 103.8 0.0 2.1 2 Dicer_dimer Dicer dimerisation domain 6.6e-25 87.5 0.1 1.1e-12 48.0 0.0 4.5 4 Ribonucleas_3_3 Ribonuclease-III-like 1.2e-15 57.8 0.0 2.4e-12 47.2 0.1 3.1 2 dsrm Double-stranded RNA binding motif 3e-14 52.8 0.0 7.8e-14 51.5 0.0 1.7 1 DEAD DEAD/DEAH box helicase 1.9e-12 46.8 0.0 7.3e-12 44.9 0.0 2.0 2 Helicase_C Helicase conserved C-terminal domain 1.6e-11 44.3 0.0 4.5e-11 42.9 0.0 1.8 1 ResIII Type III restriction enzyme, res subunit 4.1e-09 35.8 0.4 9.5e-09 34.6 0.3 1.6 1 PAZ PAZ domain ------ inclusion threshold ------ 0.019 15.1 0.0 0.095 12.8 0.0 2.2 1 AAA_22 AAA domain Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 79.6 0.0 1.4e-25 2.2e-22 1 113 [. 1210 1381 .. 1210 1382 .. 0.87 2 ! 81.3 0.0 3.8e-26 6.3e-23 1 113 [. 1469 1627 .. 1469 1628 .. 0.83 Alignments for each domain: == domain 1 score: 79.6 bits; conditional E-value: 1.4e-25 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 erLe+LGD++lkl +t yl ++y+d++eg l++ +sklvs Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1210 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVS 1249 8*************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T.......... CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp.......... 70 n+nl +++++ ++p+ l+ f+p+ wlp Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1250 NRNLLFCLIDADIPKTLNTIQFTPRYTWLPpgislphnvl 1289 ******************************9999888887 PP .........SSSSS.SC....................... CS Ribonuclease_3 71 .........lnkdlangk...................... 79 k Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1290 alwrenpefA-------Kiigphnlrdlalgdeeslvkgn 1322 7755555550.......25555555556666688888899 PP .......................................T CS Ribonuclease_3 80 ........................grqsisydlk.eqsia 94 +++s + i Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1323 csdinynrfvegcrangqsfyagaDFSSEVNFCVgLVTIP 1362 999999999999999999999988778888889999**** PP SHHHHHHHHHHHHHHHHHT CS Ribonuclease_3 95 dkvladvvEAliGaiylds 113 +kv+ad++EAl+G+i+ ++ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1363 NKVIADTLEALLGVIVKNY 1381 **************98765 PP == domain 2 score: 81.3 bits; conditional E-value: 3.8e-26 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTS CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvs 40 + Lef+GDa+l+++i+ y+fe+++++++g l++lrs+lv+ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1469 QELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVN 1508 68************************************** PP HHHHHHHHHTTTCHCHHBHHHHHHSTT--T.......... CS Ribonuclease_3 41 nenlarlakklglpsylresefdppknwlp.......... 70 n++la ++ +++l+ ++ +++ ++++ + + Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1509 NTTLACICVRHRLHFFILAENAKLSEIISKfvnfqesqgh 1548 ************************9999999775544444 PP SSSSS.SC................................ CS Ribonuclease_3 71 lnkdlangk............................... 79 Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1549 R-------Vtnyvrilleeadvqptpldlddeldmtelph 1581 0.......25566666666666677788888888888888 PP ...............................TSHHHHHHH CS Ribonuclease_3 80 .................grqsisydlkeqsiadkvladvv 102 +++ +++ +k l+dv+ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1582 ankcisqeaekgvppkgEFNMSTNVD-----VPKALGDVL 1616 88888888888888886555554444.....5******** PP HHHHHHHHHHT CS Ribonuclease_3 103 EAliGaiylds 113 EAli+a+yld+ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1617 EALIAAVYLDC 1627 **********9 PP >> Dicer_dimer Dicer dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 103.8 0.0 1.8e-33 3e-30 1 90 [. 571 673 .. 571 674 .. 0.97 2 ? -4.1 0.1 8.1 1.3e+04 53 72 .. 1699 1718 .. 1678 1720 .. 0.78 Alignments for each domain: == domain 1 score: 103.8 bits; conditional E-value: 1.8e-33 HHHHHHHHHTTSSS-TT--SS-EEEEEE--G......... CS Dicer_dimer 1 aiallarYCakLpsdaftklkpefevekeee......... 31 a+a+l+rYC+++p+daf+++ p+f+v +e+e Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 571 ALAILHRYCQTIPTDAFGFVIPWFHVLQEDErdrifgvsa 610 789***************************99******** PP ..-EEEEEE--TT-SS--.EEEE--SSHHHHHHHHHHHHH CS Dicer_dimer 32 ..glvctveLPlnsplre.iegkpmkskklakqsaAfkac 68 ++v+++++P+n++lr+ i+++pm+++k+ak saAfkac Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 611 kgKHVISINMPVNCMLRDtIYSDPMDNVKTAKISAAFKAC 650 **************************************** PP HHHHHH-S-TTTS--H.HHH-S- CS Dicer_dimer 69 kkLyelgeLndhLlPv.kkerva 90 k Ly+lgeLn++++P+ kerva Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 651 KVLYSLGELNERFVPKtLKERVA 673 ****************8888875 PP == domain 2 score: -4.1 bits; conditional E-value: 8.1 -SSHHHHHHHHHHHHHHHHH CS Dicer_dimer 53 mkskklakqsaAfkackkLy 72 ++k ak saA a ++L Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1699 GSNKDQAKLSAAKHALQQLS 1718 56788999999999999986 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.0 0.0 6.2e-07 0.001 23 78 .. 1210 1266 .. 1196 1274 .. 0.88 2 ? 5.4 0.0 0.01 17 93 120 .. 1363 1390 .. 1360 1395 .. 0.89 3 ! 48.0 0.0 6.6e-16 1.1e-12 2 81 .. 1447 1528 .. 1446 1544 .. 0.86 4 ! 9.0 0.0 0.00073 1.2 92 110 .. 1608 1626 .. 1596 1638 .. 0.84 Alignments for each domain: == domain 1 score: 19.0 bits; conditional E-value: 6.2e-07 Ribonucleas_3_3 23 erLefLGdavLelvvseyllekakk.degeltkklaslvs 61 erLe LGd+ L+l+ + yl k+++ +eg lt+ +++lvs Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1210 ERLEILGDSFLKLSATLYLASKYSDwNEGTLTEVKSKLVS 1249 9*****************9888655499************ PP Ribonucleas_3_3 62 eeslaeiakelgLgkvl 78 +++l + + ++ k+l Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1250 NRNLLFCLIDADIPKTL 1266 ****9998888887766 PP == domain 2 score: 5.4 bits; conditional E-value: 0.01 Ribonucleas_3_3 93 ekvladaleAliGAiyldkGaeeakefv 120 +kv+ad+leAl+G i + G+++a +++ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1363 NKVIADTLEALLGVIVKNYGLQHAFKML 1390 689******************9998775 PP == domain 3 score: 48.0 bits; conditional E-value: 6.6e-16 Ribonucleas_3_3 2 eelllqaltHkSy.angrkgyNerLefLGdavLelvvsey 40 + +llqaltH Sy n +g+++ Lef+Gda+L++++s+y Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1447 RRYLLQALTHPSYpTNRITGSYQELEFIGDAILDFLISAY 1486 67899********4456689******************** PP Ribonucleas_3_3 41 llek.akkdegeltkklaslvseeslaeiakelgLgkvlr 79 ++e+ +k++ g lt +++lv++++la i +++L +++ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1487 IFENnTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1526 **993455789******************99999988877 PP Ribonucleas_3_3 80 lr 81 + Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1527 AE 1528 64 PP == domain 4 score: 9.0 bits; conditional E-value: 0.00073 Ribonucleas_3_3 92 rekvladaleAliGAiyld 110 k l+d+leAli+A+yld Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1608 VPKALGDVLEALIAAVYLD 1626 56789*************8 PP >> dsrm Double-stranded RNA binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.3 0.0 0.0043 7 49 67 .] 634 653 .. 575 653 .. 0.86 2 ! 47.2 0.1 1.4e-15 2.4e-12 1 67 [] 1653 1717 .. 1653 1717 .. 0.98 Alignments for each domain: == domain 1 score: 7.3 bits; conditional E-value: 0.0043 ES.SHHHHHHHHHHHHHHHH CS dsrm 49 gs.sKKeAeqlAAekALqkL 67 + + K A+ +AA kA+++L Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 634 PMdNVKTAKISAAFKACKVL 653 4449*************987 PP == domain 2 score: 47.2 bits; conditional E-value: 1.4e-15 HHHHHHHHHHHTTSCCEEEEEEEESSTSSSE.EEEE...E CS dsrm 1 pkskLqelcqkkgkppnyeyvseegpphslk.kFtv...t 36 p++++++l+++k+ +p++ ++++eg + + +Ft+ t Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1653 PINHIRQLVEHKHAKPVFSSPIVEGETVMVScQFTCmekT 1692 89****************************9*****9999 PP EEETTEEEEEEEESSHHHHHHHHHHHHHHHH CS dsrm 37 vkvngklygtGvgssKKeAeqlAAekALqkL 67 +kv +G+gs+K++A+ +AA++ALq+L Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 1693 IKV------YGFGSNKDQAKLSAAKHALQQL 1717 999......********************98 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.5 0.0 4.7e-17 7.8e-14 8 138 .. 16 152 .. 9 179 .. 0.77 Alignments for each domain: == domain 1 score: 51.5 bits; conditional E-value: 4.7e-17 HHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx. RF DEAD 8 iplilgggdvlvaaeTGsGKTlaflipviqillet.kdq. 45 ++++ +++ +v +TGsGKT ++++ v++++ + + + Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 16 VDHLT-KSNGIVYLPTGSGKTFVAIL-VLKRFSQDfD-Kp 52 55444.588899***********987.6777877644.35 PP ......EEEEEESSHHHHHHHHHHHHHHTTTSSCCEEEET CS ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF DEAD 46 ......kalivaPtreLaeqtlnnlkqfkkypklrvllii 79 +al+++ t eLa+q++ ++++++ +v ++ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 53 iesggkRALFMCNTVELARQQAMAVRRCTNF---KVGFYV 89 999999***********************87...999999 PP TTSEHHHHHHHHH....TT.-SEEEEEHHHHHHHHHTTSS CS xxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx RF DEAD 80 ggvalardqlsvl....dngvdivvgTpgrlddlvstgkl 115 g++ + d ++ + ++ +++vgT + ++d+v ++ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 90 GEQGVD-DWTRGMwsdeIKKNQVLVGTAQVFLDMVTQTYV 128 988766.44444446775668***************9988 PP HCTTEEEEEEETHHHHHST.TTHH CS xxxxxxxxxxxxxxxxxxx.xxxx RF DEAD 116 nlsqvrllVlDEadrllsq.gfsd 138 ls+++++++DE+++ f++ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 129 ALSSLSVVIIDECHHGTGHhPFRE 152 *************98666524444 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 44.9 0.0 4.4e-15 7.3e-12 20 74 .. 441 495 .. 433 498 .. 0.92 2 ? -4.3 0.0 9 1.5e+04 17 34 .. 908 925 .. 906 933 .. 0.83 Alignments for each domain: == domain 1 score: 44.9 bits; conditional E-value: 4.4e-15 HHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEESS CS Helicase_C 20 nereeileqfnagkskvlvatnvaerGidlpdvnvVinfd 59 + ++ ++qf++g+ + +++++v+e+Gid++++n+V+++d Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 441 KWQKSAIQQFRDGNANLMICSSVLEEGIDVQACNHVFILD 480 567899********************************** PP SSSSHHHHHHHHTTS CS Helicase_C 60 lprsvtsyiQriGRt 74 + ++ y+Q GR+ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 481 PVKTFNMYVQSKGRA 495 **************5 PP == domain 2 score: -4.3 bits; conditional E-value: 9 STHHHHHHHHHHHHTTSS CS Helicase_C 17 lpqnereeileqfnagks 34 +++n+++++ +f+ +k+ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 908 MEKNQQDKTYYEFTMSKY 925 8999****9999999887 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 42.9 0.0 2.7e-14 4.5e-11 2 179 .. 6 172 .. 5 176 .. 0.73 Alignments for each domain: == domain 1 score: 42.9 bits; conditional E-value: 2.7e-14 -EE-HHHHHHHHHHT.......TTSEEEEEESTTSTHHHH CS ResIII 2 lklrpyQeeaienllesiekedekkrglivmaTGtGKTlv 41 +k+r yQ + ++ l k +g++ ++TG+GKT+v Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 6 IKPRGYQLRLVDHLT--------KSNGIVYLPTGSGKTFV 37 566777777777776........679************** PP HHHHHHHH-S............-EEEEESSHHHHHHHHHH CS ResIII 42 aasliarlar............kflflvprkelleqalee 69 a+ l+++ ++ ++lf +++ el q + Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 38 AI-LVLKRFSqdfdkpiesggkRALFMCNTVELARQQAMA 76 **.555555559999***********************99 PP GGGGTGG...GEEEESSS-B---SEEEEEHHHHH...... CS ResIII 70 fkkfeskkiefekkniavakkdklfgeeqkkskdkeekkk 109 +++f+ ++ +++ + + +++e Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 77 V----RRCTNFKVGFY----VGEQGVDDWTRGMWSDE--I 106 9....55555544444....44334444444444334..4 PP ............................HTHHHHTTT-SE CS ResIII 110 kdkeiilttiqklhkaleeeeendeskseslealldefdv 149 k++++++ t+q + +++ l v Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 107 KKNQVLVGTAQVFLDMVTQ-----------TYVALSSLSV 135 6789999999999988764...........556677899* PP EEEETGGGTTSTT.THHHHH.......---SEEEEEE CS ResIII 150 iiiDEaHrlsakkkyreile.......fkkafllglT 179 +iiDE+H+ + + +re ++ k + ++glT Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 136 VIIDECHHGTGHHPFREFMRlftianqTKLPRVVGLT 172 **********999988887766654444444446665 PP >> PAZ PAZ domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 34.6 0.3 5.7e-12 9.5e-09 4 130 .. 849 998 .. 845 1000 .. 0.84 Alignments for each domain: == domain 1 score: 34.6 bits; conditional E-value: 5.7e-12 HHHHHHCCCSSSHCCTSHHHH......HHHHHTTEEEEET CS PAZ 4 leflerilkqetrrqkkfrkk......lakalkglivltt 37 + +++r++++ +++ +++ +++ g iv+ + Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 849 MTNFRRLPQSHGSNV---QQReqqpapRPEDFEGKIVTQW 885 333444444333333...33333477799*********** PP TSCGGEEEEEEEEECCETTTSEEEETTTEEEEHHHHHHHC CS PAZ 38 yrnnerkyriadiseeptpestfpdkegkeitvaeYfkkk 77 y n ++ ++++++e tp s +++ ++ t++e+ k Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 886 YANYDKPMLVTKVHRELTPLSYMEKN-QQDKTYYEFTMSK 924 **************************.************* PP CT---S...STTSEEEEEECSSSS................ CS PAZ 78 Ynielk...ypnqplldvkktsrr................ 98 Y+ ++ +++ ++ v+ + + Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 925 YGNRIGdvvHKDKFMIEVRDLTEQltfyvhnrgkfnaksk 964 **99861215799*******9999**************** PP ..SEEEE-CCCEEEETTT---S--XXXXXXXXXX CS PAZ 99 ..qeqylppElcdivplqrslkkdfaaqksilyr 130 +++l+pElc+ +++ l+ + ++sil r Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 965 akMKVILIPELCFNFNFPGDLWLKLIFLPSILNR 998 **********************999999998765 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 5.7e-05 0.095 4 120 .. 21 168 .. 17 173 .. 0.74 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 5.7e-05 AAA_22 4 agilvvtGesGvGKTtlarrlaeqldevaeaae...karv 40 ++ ++v+ ++G+GKT++a +++++ + + +r+ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 21 KSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIesgGKRA 60 66789999*************9999876665558995555 PP AAA_22 41 vfveapsst.spkellkkllralglpakg........... 68 +f+ + + +++++ + + +++++ Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 61 LFMCNTVELaRQQAMAVRRCTNFKVGFYVgeqgvddwtrg 100 5444444443777778888888887776687788888888 PP AAA_22 69 ...........rltteell.eallralrrrrv.glliiDE 95 +t++++ ++++++ + + ++iiDE Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 101 mwsdeikknqvLVGTAQVFlDMVTQTYVALSSlSVVIIDE 140 888887777774444444447777777777779******* PP AAA_22 96 aqhLr...seelleelrdlldetgvklv 120 +h + + + + l +++++t+++ v Dicer-2,_isoform_A_[Drosophila_melanogaster]gi|21627058|gb|AAF57830.2 141 CHHGTghhPFREFMRLFTIANQTKLPRV 168 ***6556548888888899999998865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1722 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 376 (0.0253523); expected 296.6 (0.02) Passed bias filter: 204 (0.013755); expected 296.6 (0.02) Passed Vit filter: 32 (0.00215764); expected 14.8 (0.001) Passed Fwd filter: 9 (0.000606837); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 9 [number of targets reported over threshold] # CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.57 # Mc/sec: 7749.99 // Query: Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 [L=1886] Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.7e-56 187.8 0.0 8e-27 93.9 0.0 3.0 2 Ribonuclease_3 Ribonuclease III domain 2.3e-32 111.1 0.0 4.1e-32 110.3 0.0 1.5 1 PAZ PAZ domain 8.4e-29 100.1 0.8 1.9e-14 53.7 0.0 4.4 3 Ribonucleas_3_3 Ribonuclease-III-like 5.4e-26 90.1 1.4 7.6e-25 86.5 0.0 3.1 3 Dicer_dimer Dicer dimerisation domain 4.8e-22 78.2 0.2 1.7e-08 34.9 0.0 3.8 3 dsrm Double-stranded RNA binding motif 8.7e-17 61.1 0.1 8.2e-14 51.6 0.0 3.6 3 DND1_DSRM double strand RNA binding domain from DEAD E 2.2e-14 53.0 0.0 4.8e-14 51.9 0.0 1.6 1 Helicase_C Helicase conserved C-terminal domain 3.5e-12 46.5 0.1 9.5e-12 45.1 0.1 1.7 1 ResIII Type III restriction enzyme, res subunit 2.3e-11 43.4 0.2 2.3e-10 40.2 0.0 2.3 2 DEAD DEAD/DEAH box helicase 0.0014 17.5 0.3 0.0032 16.3 0.2 1.5 1 SNF2_N SNF2 family N-terminal domain Domain annotation for each model (and alignments): >> Ribonuclease_3 Ribonuclease III domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 90.8 0.0 5.1e-29 7.6e-26 1 114 [] 1352 1495 .. 1352 1495 .. 0.84 2 ! 93.9 0.0 5.4e-30 8e-27 1 114 [] 1571 1684 .. 1571 1684 .. 0.90 Alignments for each domain: == domain 1 score: 90.8 bits; conditional E-value: 5.1e-29 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTC CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklgl 53 er e LGDa+lk+++++ lf +yp+ heg+l+++r+++vsn +l+++a +gl Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1352 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGL 1404 799************************************************** PP HCHHBHHHHHHSTT--T.....SSSSS.SC....................... CS Ribonuclease_3 54 psylresefdppknwlp.....lnkdlangk...................... 79 +sy++++ f p+++ p + +d + g Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1405 QSYIQADRFAPSRWSAPgvppvFDEDTKDGGssffdeeqkpvseensdvfedg 1457 *********************95555555556666666666666667777777 PP .................TSHHHHHHHHHHHHHHHHHTT CS Ribonuclease_3 80 ..grqsisydlk.eqsiadkvladvvEAliGaiyldsg 114 ++ + + dl+ + + k+ladvvEAliG++y+++g Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1458 emEDGELEGDLSsYRVLSSKTLADVVEALIGVYYVEGG 1495 773344445555677778*****************986 PP == domain 2 score: 93.9 bits; conditional E-value: 5.4e-30 HHHHHHHHHHHHHHHHHHHHHHSTTSSHHHHHHHHHHHTSHHHHHHHHHTTTC CS Ribonuclease_3 1 erLefLGDavlklaittylfetypdlhegklsklrsklvsnenlarlakklgl 53 +rLef+GDavl+++it++lf ty++l++g+l++lr++ v+nen ar+a k++l Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1571 QRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKL 1623 7**************************************************** PP HCHHBHHHHHHSTT--TSSSSS.SC..................TSHHHHHHHH CS Ribonuclease_3 54 psylresefdppknwlplnkdlangkgrqsisydlk...eqsiadkvladvvE 103 + ylr+ ++ + k+++++ k+ +++ +s+ ++ + a+kvl+d+vE Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1624 HLYLRHGSSALEKQIREFVKEVQTE---SSKPGFNSfglGDCKAPKVLGDIVE 1673 *****************65555554...444455555678899********** PP HHHHHHHHHTT CS Ribonuclease_3 104 AliGaiyldsg 114 +++Gai+ldsg Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1674 SIAGAIFLDSG 1684 *********97 PP >> PAZ PAZ domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 110.3 0.0 2.8e-35 4.1e-32 2 134 .. 1158 1317 .. 1157 1318 .. 0.97 Alignments for each domain: == domain 1 score: 110.3 bits; conditional E-value: 2.8e-35 EHHHHHHHCCCSSSHCCTSHHHH...HHHHHTTEEEEETTSCGGEEEEEEEEE CS PAZ 2 evleflerilkqetrrqkkfrkk...lakalkglivlttyrnnerkyriadis 51 +v + +e+ +++ +++k ++++ +a++l+g iv++++++ +++++++i+ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1158 PVRDAFEKEVEEDLSKGKLMMADgcmVAEDLIGKIVTAAHSG--KRFYVDSIC 1208 67888999999999999999999*******************..********* PP CCETTTSEEEET.....TTEEEEHHHHHHHCCT---SSTTSEEEEEECSSSS. CS PAZ 52 eeptpestfpdk.....egkeitvaeYfkkkYnielkypnqplldvkktsrr. 98 +++++e++fp+k + ++ t+a+Y+k+kY+++l++++qpl++ ++ s++ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1209 YDMSAETSFPRKegylgPLEYNTYADYYKQKYGVDLNCKQQPLIKGRGVSYCk 1261 ***************************************************** PP ....................SEEEE-CCCEEEETTT---S--XXXXXXXXXXX CS PAZ 99 ....................qeqylppElcdivplqrslkkdfaaqksilyrt 131 ++++lppElc ++pl+ sl++ +++++si+ r+ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1262 nllsprfeqsgesetvldktYYVFLPPELCVVHPLSGSLIRGAQRLPSIMRRV 1314 ****************************************************9 PP XXX CS PAZ 132 ral 134 +++ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1315 ESM 1317 986 PP >> Ribonucleas_3_3 Ribonuclease-III-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.5 0.0 9.4e-11 1.4e-07 7 80 .. 1338 1410 .. 1333 1419 .. 0.85 2 ! 7.7 0.0 0.0021 3.1 93 120 .. 1476 1503 .. 1463 1507 .. 0.83 3 ! 53.7 0.0 1.3e-17 1.9e-14 2 116 .. 1550 1688 .. 1549 1697 .. 0.80 Alignments for each domain: == domain 1 score: 31.5 bits; conditional E-value: 9.4e-11 Ribonucleas_3_3 7 qaltHkSyangrkgyNerLefLGdavLelvvseyl.lekakkdegeltkklas 58 +alt S + ++ ++er e LGda L+ vvs++l l++++k eg+lt+++++ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1338 EALTAASCQ--ETFCYERAELLGDAYLKWVVSRFLfLKYPQKHEGQLTRMRQQ 1388 566666665..4579*******************934557778********** PP Ribonucleas_3_3 59 lvseeslaeiakelgLgkvlrl 80 +vs+ l ++a gL+++++ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1389 MVSNMVLYQFALVKGLQSYIQA 1410 *******************986 PP == domain 2 score: 7.7 bits; conditional E-value: 0.0021 Ribonucleas_3_3 93 ekvladaleAliGAiyldkGaeeakefv 120 +k lad++eAliG y+++G+ +a++++ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1476 SKTLADVVEALIGVYYVEGGKIAANHLM 1503 4689**************9988877655 PP == domain 3 score: 53.7 bits; conditional E-value: 1.3e-17 Ribonucleas_3_3 2 eelllqaltHkSyangrkgyNerLefLGdavLelvvseyl.lekakkdegelt 53 + ll +a+tH S + ++++rLef+GdavL+ +++++l + +++ + g+lt Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1550 KGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLfFTYTSLPPGRLT 1602 67999********99999***************77666652788999****** PP Ribonucleas_3_3 54 kklaslvseeslaeiakelgLgkvlrl.....................rkgee 85 +a+ v++e+ a++a +++L +lr + g + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1603 DLRAAAVNNENFARVAVKHKLHLYLRHgssalekqirefvkevqtessKPGFN 1655 ********************888888888888888877876555444322222 PP Ribonucleas_3_3 86 e..tessgrekvladaleAliGAiyldkGaeea 116 + ++ + kvl+d++e++ GAi+ld+G++++ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1656 SfgLGDCKAPKVLGDIVESIAGAIFLDSGKDTT 1688 21123334466******************9876 PP >> Dicer_dimer Dicer dimerisation domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 86.5 0.0 5.1e-28 7.6e-25 1 86 [. 840 930 .. 840 935 .. 0.96 2 ? -4.2 0.3 10 1.5e+04 54 72 .. 1754 1772 .. 1750 1777 .. 0.80 3 ? 1.0 0.0 0.23 3.5e+02 49 71 .. 1859 1881 .. 1853 1884 .. 0.83 Alignments for each domain: == domain 1 score: 86.5 bits; conditional E-value: 5.1e-28 HHHHHHHHHTTSSS-TT--SS-EEEEEE--G.....-EEEEEE--TT-SS--EEE CS Dicer_dimer 1 aiallarYCakLpsdaftklkpefevekeee.....glvctveLPlnsplreieg 50 a+ l++ YC++Lp d++ l+pef++ek e+ +++c+++LP+n+p++ +eg Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 840 AVGLVHFYCSQLPGDRYAILRPEFSMEKHEKpgghtEYSCRLQLPCNAPFEILEG 894 789***************************999********************** PP E--SSHHHHHHHHHHHHHHHHHHH-S-TTTS--HHH CS Dicer_dimer 51 kpmkskklakqsaAfkackkLyelgeLndhLlPvkk 86 ++++s++la+q++++ ackkL+e+g+++d+LlP k Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 895 PVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKG 930 *********************************975 PP == domain 2 score: -4.2 bits; conditional E-value: 10 SSHHHHHHHHHHHHHHHHH CS Dicer_dimer 54 kskklakqsaAfkackkLy 72 ++kk+a++ aA +a +L Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1754 PQKKMAQKLAARNALAALK 1772 5789999999999998884 PP == domain 3 score: 1.0 bits; conditional E-value: 0.23 EEE--SSHHHHHHHHHHHHHHHH CS Dicer_dimer 49 egkpmkskklakqsaAfkackkL 71 g+pm+s+k ak saA + L Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1859 IGEPMPSVKKAKDSAAVLLLELL 1881 689*************8777666 PP >> dsrm Double-stranded RNA binding motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.2 0.0 0.0011 1.7 14 67 .] 859 915 .. 843 915 .. 0.79 2 ! 29.5 0.2 5.3e-10 7.9e-07 1 67 [] 1711 1771 .. 1711 1771 .. 0.90 3 ! 34.9 0.0 1.1e-11 1.7e-08 3 67 .] 1811 1881 .. 1809 1881 .. 0.79 Alignments for each domain: == domain 1 score: 9.2 bits; conditional E-value: 0.0011 SCCEEEEEEEESSTSSSEEEEEEEEETTEEEE...EEEE.SSHHHHHHHHHHHHH CS dsrm 14 kppnyeyvseegpphslkkFtvtvkvngklyg...tGvg.ssKKeAeqlAAekAL 64 +p++ ++e+p ++ +++++ + + ++ + +G + ss ++A+q+ + +A+ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 859 LRPEFSMEKHEKPGGH-TEYSCRLQLPCNAPFeilEGPVcSSMRLAQQAVCLAAC 912 679999999****999.9********444443444554426************** PP HHH CS dsrm 65 qkL 67 +kL Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 913 KKL 915 *98 PP == domain 2 score: 29.5 bits; conditional E-value: 5.3e-10 HHHHHHHHHHHTTSCCEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEESSHH CS dsrm 1 pkskLqelcqkkgkppnyeyvseegpphslkkFtvtvkvngklygtGvgssKK 53 p++ Lqe cq++ +++y+ +++ + tv+v ++g ++g + + KK Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1711 PVRELQERCQQQAEGLEYK----ASRSGN--TATVEVFIDGVQVGVAQNPQKK 1757 789*************995....555555..899******************* PP HHHHHHHHHHHHHH CS dsrm 54 eAeqlAAekALqkL 67 A++lAA++AL+ L Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1758 MAQKLAARNALAAL 1771 ***********876 PP == domain 3 score: 34.9 bits; conditional E-value: 1.1e-11 HHHHH.HHHHTTSCCEEEEEEEESSTSSSE.EEEEEEEETTEEEE...EEEES CS dsrm 3 skLqe.lcqkkgkppnyeyvseegpphslk.kFtvtvkvngklyg...tGvgs 50 + L+ + k++++p+y++v+e+gp+h+++ +F v v+ ++ ++ +G+ + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1811 QTLNDiCLRKNWPMPSYRCVKEGGPAHAKRfTFGVRVNTSDRGWTdecIGEPM 1863 689**666777799999999999999995555555555555555598899998 PP .SHHHHHHHHHHHHHHHH CS dsrm 51 .sKKeAeqlAAekALqkL 67 s K+A+ +AA++ L+ L Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1864 pSVKKAKDSAAVLLLELL 1881 8*************9976 PP >> DND1_DSRM double strand RNA binding domain from DEAD END PROTEIN 1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.5 0.0 0.23 3.5e+02 18 65 .. 860 901 .. 853 919 .. 0.71 2 ? 3.3 0.1 0.067 1e+02 55 80 .] 1746 1772 .. 1711 1772 .. 0.78 3 ! 51.6 0.0 5.5e-17 8.2e-14 3 79 .. 1809 1881 .. 1808 1882 .. 0.95 Alignments for each domain: == domain 1 score: 1.5 bits; conditional E-value: 0.23 DND1_DSRM 18 sPvYelhseagpdgrllFlYkVvipglatqleglvqiftpsklsstke 65 +P+++++++ p g + ++ +p a ++i++ ++s++ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 860 RPEFSMEKHEKPGGHTEYSCRLQLPCNAP-----FEILE-GPVCSSMR 901 7********************99997665.....45555.33344444 PP == domain 2 score: 3.3 bits; conditional E-value: 0.067 DND1_DSRM 55 ft.psklsstkeeAkeaaAeqvLqaLg 80 ++ + +++k+ A+++aA+++L+aL+ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1746 VQvGVAQNPQKKMAQKLAARNALAALK 1772 4446677899**************995 PP == domain 3 score: 51.6 bits; conditional E-value: 5.5e-17 DND1_DSRM 3 avslLeelCqknkwgsPvYelhseagpdgrllFlYkVvipglatqleglvqif 55 ++++L+++C +++w++P Y++ +e gp++ ++F++ V +++ ++ g+++ + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1809 TRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDR---GWTDEC 1858 689*****************************************...999999 PP DND1_DSRM 56 tpsklsstkeeAkeaaAeqvLqaL 79 + ++++++Ak++aA +L+ L Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1859 I-GEPMPSVKKAKDSAAVLLLELL 1881 8.799***************9987 PP >> Helicase_C Helicase conserved C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.9 0.0 3.3e-17 4.8e-14 9 74 .. 694 764 .. 686 768 .. 0.89 Alignments for each domain: == domain 1 score: 51.9 bits; conditional E-value: 3.3e-17 -EEEEST.....TSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTEEEEEES CS Helicase_C 9 kvailhg.....elpqnereeileqfnagkskvlvatnvaerGidlpdvnvVinf 58 ++a + g e+++++ ++++++f++g lvat+vae+G+d+ ++nvV+ f Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 694 RCASMIGhnnsqEMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRF 748 5555555666679****************************************** PP SSSSSHHHHHHHHTTS CS Helicase_C 59 dlprsvtsyiQriGRt 74 dl ++v yiQ +GR+ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 749 DLAKTVLAYIQSRGRA 764 ***************7 PP >> ResIII Type III restriction enzyme, res subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 45.1 0.1 6.4e-15 9.5e-12 12 182 .. 250 415 .. 238 417 .. 0.76 Alignments for each domain: == domain 1 score: 45.1 bits; conditional E-value: 6.4e-15 HHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH-S.........-EEEEE CS ResIII 12 ienllesiekedekkrglivmaTGtGKTlvaasliarlar.........kflflv 57 + l+ +e++ + k+ + ++TG+GKTl+a+ li+ +++ +flv Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 250 RRYQLDVLEQA-KAKNTIAFLETGAGKTLIAILLIKSVHKdlmsqnrkmLSVFLV 303 44444445555.78899999************99999999999999978789*** PP SSHHHHHHHHHHGGGGTGG...GEEEESSS-B---SEEEEEHHHHH......... CS ResIII 58 prkelleqaleefkkfeskkiefekkniavakkdklfgeeqkkskdkeekkkkdk 112 p+ l+ q e + +++++++ + ++++ +d f +++ +++ ++k Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 304 PKVPLVYQQAEVI--RNQTCFQV-GHYCGEMGQD--FW-----DSRRWQREFESK 348 ***********99..22222222.3333333322..22.....222234456789 PP .........................HTHHHHTTT-SEEEEETGGGTTSTT.THHH CS ResIII 113 eiilttiqklhkaleeeeendeskseslealldefdviiiDEaHrlsakkkyrei 167 +++++t+q l + l+ + + ++ d++i DE+H++ +k+ y + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 349 QVLVMTAQILLNILRH-----------SIIRMETIDLLILDECHHAVKKHPYSLV 392 *************874...........445677899***************9999 PP HH........---SEEEEEESS- CS ResIII 168 le........fkkafllglTATp 182 + k + ++g+TA p Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 393 MSefyhttpkDKRPAIFGMTASP 415 9999999999888999*****88 PP >> DEAD DEAD/DEAH box helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.2 0.0 1.5e-13 2.3e-10 4 162 .. 253 415 .. 250 420 .. 0.76 2 ? 0.0 0.0 0.34 5e+02 25 83 .. 1683 1747 .. 1665 1763 .. 0.74 Alignments for each domain: == domain 1 score: 40.2 bits; conditional E-value: 1.5e-13 HHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHT.CTT....EEEEEESS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx....xxxxxxxx RF DEAD 4 QaeaiplilgggdvlvaaeTGsGKTlaflipviqillet.kdq....kalivaPt 53 Q +++++ +++++ eTG+GKTl++++ i+ + + +q ++++P Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 253 QLDVLEQAK-AKNTIAFLETGAGKTLIAILL-IKSVHKDlMSQnrkmLSVFLVPK 305 556666555.59999************9984.444544444445556999***** PP HHHHHHHHHHHHHHTTTSSCCEEEETTTSE.....HHHHHHHHHTT.-SEEEEEH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxx RF DEAD 54 reLaeqtlnnlkqfkkypklrvlliiggva.....lardqlsvldngvdivvgTp 103 L+ q+++ +++ + +v + g++ +r q+++ +++v+T Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 306 VPLVYQQAEVIRNQTCF---QVGHYCGEMGqdfwdSRRWQREFE--SKQVLVMTA 355 ***********999887...777776655522232233333333..479****** PP HHHHHHHHTTSSHCTTEEEEEEETHHHHHST.TTHHHHHHHHHHSHHCTTSEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF DEAD 104 grlddlvstgklnlsqvrllVlDEadrllsq.gfsdqlnqilqilcdgkrlqviv 157 + l++++++ ++++ + ll+lDE+++ ++ +s + + + + kr + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 356 QILLNILRHSIIRMETIDLLILDECHHAVKKhPYSLVMSEFYHTTPKDKRPAIFG 410 ********96669999**********99997678889999999998888888999 PP EESS- CS xxxxx RF DEAD 158 lSATl 162 ++A + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 411 MTASP 415 99976 PP == domain 2 score: 0.0 bits; conditional E-value: 0.34 SSHHHHHHHHHHHHHHHT.CTTEEEEEESSHHHHHHHHHHHHHHTTT.....S CS xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x RF DEAD 25 sGKTlaflipviqillet.kdqkalivaPtreLaeqtlnnlkqfkky.....p 71 sGK + ++ +v+q ll+ + ++l + P reL e + ++++ + + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1683 SGKDTTAAWKVFQPLLQPmVTPETLPMHPVRELQERCQQQAEGLEYKasrsgN 1735 89988999999999988877789**********99888887655443344554 PP SCCEEEETTTSE CS xxxxxxxxxxxx RF DEAD 72 klrvlliiggva 83 v + i gv+ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 1736 TATVEVFIDGVQ 1747 455555566555 PP >> SNF2_N SNF2 family N-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.2 2.1e-06 0.0032 21 146 .. 258 383 .. 242 407 .. 0.71 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 2.1e-06 ..TTT-EEEE---TTSSCCHHHHHHHHHHCCCH.S-.....EEEE--T.TTHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxx RF SNF2_N 21 aeqsvrggiLaDemGlGKTvqvialilllkeea.erkkkkstLivvPs.slldqW 73 ++ ++++ i + e+G GKT+ +i li+ +++ ++++k + +vP+ l+ q Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 258 EQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLmSQNRKMLSVFLVPKvPLVYQQ 312 567788899999***************5544320222222355667775666666 PP HHHHHHCS.T.T--EEE--HCC....CHHHTT-SSSTT-SEEEE-CCHHH..TST CS xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SNF2_N 74 vneierhvspsalrvlvyggqk....kakksaaklladydvvittydvlralrek 124 + i++ + +v +y g+ ++ ++ +++++v++ t ++l + Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 313 AEVIRNQT-C--FQVGHYCGEMgqdfWDSRRWQREFESKQVLVMTAQILL---NI 361 66666665.3..3455554444333433455688999*************...77 PP CTCHHHHTSEEEEEEETTCCGG CS xxxxxxxxxxxxxxxxxxxxxx RF SNF2_N 125 krksvlkkvkwkrvvlDEahrl 146 r s + ++ ++lDE+h+ Dicer_[Arabidopsis_thaliana]gi|374259482|gb|AEZ02177.1 362 LRHSIIRMETIDLLILDECHHA 383 7777777778*********985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (1886 residues) Target model(s): 14831 (2610332 nodes) Passed MSV filter: 572 (0.0385679); expected 296.6 (0.02) Passed bias filter: 232 (0.0156429); expected 296.6 (0.02) Passed Vit filter: 24 (0.00161823); expected 14.8 (0.001) Passed Fwd filter: 10 (0.000674263); expected 0.1 (1e-05) Initial search space (Z): 14831 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.57 # Mc/sec: 8488.08 //