## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[2017-07-17-FrozKera-DMSO-6h-b_R1.2x36mers.hg19-male.nochrM.bam] OUTPUT=2017-07-17-FrozKera-DMSO-6h-b_R1.2x36mers.hg19-male.nochrM.dedup.bam METRICS_FILE=2017-07-17-FrozKera-DMSO-6h-b_R1.2x36mers.hg19-male.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 22 23:57:00 PDT 2017

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	27929074	0	0	3354089	462896	0.120093	121137888

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.014986
2.0	1.820979
3.0	2.46101
4.0	2.969255
5.0	3.372847
6.0	3.693337
7.0	3.947835
8.0	4.14993
9.0	4.310412
10.0	4.43785
11.0	4.539047
12.0	4.619407
13.0	4.68322
14.0	4.733893
15.0	4.774132
16.0	4.806086
17.0	4.83146
18.0	4.85161
19.0	4.86761
20.0	4.880316
21.0	4.890406
22.0	4.898418
23.0	4.90478
24.0	4.909833
25.0	4.913845
26.0	4.91703
27.0	4.91956
28.0	4.921569
29.0	4.923165
30.0	4.924431
31.0	4.925437
32.0	4.926236
33.0	4.92687
34.0	4.927374
35.0	4.927774
36.0	4.928092
37.0	4.928344
38.0	4.928544
39.0	4.928703
40.0	4.92883
41.0	4.92893
42.0	4.92901
43.0	4.929073
44.0	4.929123
45.0	4.929163
46.0	4.929195
47.0	4.92922
48.0	4.92924
49.0	4.929256
50.0	4.929268
51.0	4.929278
52.0	4.929286
53.0	4.929293
54.0	4.929298
55.0	4.929302
56.0	4.929305
57.0	4.929307
58.0	4.929309
59.0	4.929311
60.0	4.929312
61.0	4.929313
62.0	4.929314
63.0	4.929314
64.0	4.929315
65.0	4.929315
66.0	4.929316
67.0	4.929316
68.0	4.929316
69.0	4.929316
70.0	4.929316
71.0	4.929316
72.0	4.929317
73.0	4.929317
74.0	4.929317
75.0	4.929317
76.0	4.929317
77.0	4.929317
78.0	4.929317
79.0	4.929317
80.0	4.929317
81.0	4.929317
82.0	4.929317
83.0	4.929317
84.0	4.929317
85.0	4.929317
86.0	4.929317
87.0	4.929317
88.0	4.929317
89.0	4.929317
90.0	4.929317
91.0	4.929317
92.0	4.929317
93.0	4.929317
94.0	4.929317
95.0	4.929317
96.0	4.929317
97.0	4.929317
98.0	4.929317
99.0	4.929317
100.0	4.929317