## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[2017-07-17-FrozKera-DMSO-6h-a_R1.2x36mers.hg19-male.nochrM.bam] OUTPUT=2017-07-17-FrozKera-DMSO-6h-a_R1.2x36mers.hg19-male.nochrM.dedup.bam METRICS_FILE=2017-07-17-FrozKera-DMSO-6h-a_R1.2x36mers.hg19-male.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 22 23:31:22 PDT 2017

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	23167865	0	0	3129959	410211	0.135099	87465560

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.015745
2.0	1.795124
3.0	2.39314
4.0	2.851997
5.0	3.204077
6.0	3.474227
7.0	3.681513
8.0	3.840563
9.0	3.962601
10.0	4.056241
11.0	4.128091
12.0	4.183222
13.0	4.225523
14.0	4.257981
15.0	4.282885
16.0	4.301995
17.0	4.316657
18.0	4.327908
19.0	4.336541
20.0	4.343164
21.0	4.348247
22.0	4.352146
23.0	4.355139
24.0	4.357435
25.0	4.359196
26.0	4.360548
27.0	4.361585
28.0	4.362381
29.0	4.362992
30.0	4.36346
31.0	4.36382
32.0	4.364095
33.0	4.364307
34.0	4.364469
35.0	4.364594
36.0	4.36469
37.0	4.364763
38.0	4.364819
39.0	4.364863
40.0	4.364896
41.0	4.364921
42.0	4.364941
43.0	4.364956
44.0	4.364967
45.0	4.364976
46.0	4.364983
47.0	4.364988
48.0	4.364992
49.0	4.364995
50.0	4.364997
51.0	4.364999
52.0	4.365
53.0	4.365002
54.0	4.365002
55.0	4.365003
56.0	4.365003
57.0	4.365004
58.0	4.365004
59.0	4.365004
60.0	4.365004
61.0	4.365005
62.0	4.365005
63.0	4.365005
64.0	4.365005
65.0	4.365005
66.0	4.365005
67.0	4.365005
68.0	4.365005
69.0	4.365005
70.0	4.365005
71.0	4.365005
72.0	4.365005
73.0	4.365005
74.0	4.365005
75.0	4.365005
76.0	4.365005
77.0	4.365005
78.0	4.365005
79.0	4.365005
80.0	4.365005
81.0	4.365005
82.0	4.365005
83.0	4.365005
84.0	4.365005
85.0	4.365005
86.0	4.365005
87.0	4.365005
88.0	4.365005
89.0	4.365005
90.0	4.365005
91.0	4.365005
92.0	4.365005
93.0	4.365005
94.0	4.365005
95.0	4.365005
96.0	4.365005
97.0	4.365005
98.0	4.365005
99.0	4.365005
100.0	4.365005