## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[2017-07-17-FrozKera-DMSO-24hI-a_R1.2x36mers.hg19-male.nochrM.bam] OUTPUT=2017-07-17-FrozKera-DMSO-24hI-a_R1.2x36mers.hg19-male.nochrM.dedup.bam METRICS_FILE=2017-07-17-FrozKera-DMSO-24hI-a_R1.2x36mers.hg19-male.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 22 23:31:22 PDT 2017

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	30211369	0	0	4401958	570318	0.145705	104540295

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.016596
2.0	1.778045
3.0	2.348384
4.0	2.775578
5.0	3.095554
6.0	3.335221
7.0	3.514736
8.0	3.649196
9.0	3.74991
10.0	3.825345
11.0	3.881848
12.0	3.92417
13.0	3.955869
14.0	3.979613
15.0	3.997397
16.0	4.010718
17.0	4.020696
18.0	4.028169
19.0	4.033767
20.0	4.037959
21.0	4.0411
22.0	4.043452
23.0	4.045214
24.0	4.046534
25.0	4.047522
26.0	4.048262
27.0	4.048817
28.0	4.049232
29.0	4.049543
30.0	4.049776
31.0	4.049951
32.0	4.050082
33.0	4.05018
34.0	4.050253
35.0	4.050308
36.0	4.050349
37.0	4.05038
38.0	4.050403
39.0	4.05042
40.0	4.050433
41.0	4.050443
42.0	4.05045
43.0	4.050456
44.0	4.05046
45.0	4.050463
46.0	4.050465
47.0	4.050467
48.0	4.050468
49.0	4.050469
50.0	4.05047
51.0	4.05047
52.0	4.050471
53.0	4.050471
54.0	4.050471
55.0	4.050471
56.0	4.050472
57.0	4.050472
58.0	4.050472
59.0	4.050472
60.0	4.050472
61.0	4.050472
62.0	4.050472
63.0	4.050472
64.0	4.050472
65.0	4.050472
66.0	4.050472
67.0	4.050472
68.0	4.050472
69.0	4.050472
70.0	4.050472
71.0	4.050472
72.0	4.050472
73.0	4.050472
74.0	4.050472
75.0	4.050472
76.0	4.050472
77.0	4.050472
78.0	4.050472
79.0	4.050472
80.0	4.050472
81.0	4.050472
82.0	4.050472
83.0	4.050472
84.0	4.050472
85.0	4.050472
86.0	4.050472
87.0	4.050472
88.0	4.050472
89.0	4.050472
90.0	4.050472
91.0	4.050472
92.0	4.050472
93.0	4.050472
94.0	4.050472
95.0	4.050472
96.0	4.050472
97.0	4.050472
98.0	4.050472
99.0	4.050472
100.0	4.050472