## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[2017-07-17-FrozKera-DMSO-24h-b_R1.2x36mers.hg19-male.nochrM.bam] OUTPUT=2017-07-17-FrozKera-DMSO-24h-b_R1.2x36mers.hg19-male.nochrM.dedup.bam METRICS_FILE=2017-07-17-FrozKera-DMSO-24h-b_R1.2x36mers.hg19-male.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 22 23:31:22 PDT 2017

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	25799122	0	0	2797266	418977	0.108425	126824134

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.014887
2.0	1.842965
3.0	2.518621
4.0	3.06991
5.0	3.519724
6.0	3.886742
7.0	4.186203
8.0	4.430543
9.0	4.629908
10.0	4.792577
11.0	4.925303
12.0	5.033598
13.0	5.12196
14.0	5.194057
15.0	5.252884
16.0	5.300882
17.0	5.340046
18.0	5.372
19.0	5.398073
20.0	5.419347
21.0	5.436704
22.0	5.450867
23.0	5.462423
24.0	5.471852
25.0	5.479545
26.0	5.485823
27.0	5.490944
28.0	5.495123
29.0	5.498533
30.0	5.501315
31.0	5.503585
32.0	5.505437
33.0	5.506949
34.0	5.508182
35.0	5.509188
36.0	5.510009
37.0	5.510679
38.0	5.511225
39.0	5.511671
40.0	5.512035
41.0	5.512332
42.0	5.512574
43.0	5.512772
44.0	5.512933
45.0	5.513065
46.0	5.513172
47.0	5.51326
48.0	5.513331
49.0	5.513389
50.0	5.513437
51.0	5.513476
52.0	5.513507
53.0	5.513533
54.0	5.513554
55.0	5.513572
56.0	5.513586
57.0	5.513597
58.0	5.513606
59.0	5.513614
60.0	5.51362
61.0	5.513625
62.0	5.513629
63.0	5.513633
64.0	5.513636
65.0	5.513638
66.0	5.51364
67.0	5.513641
68.0	5.513642
69.0	5.513643
70.0	5.513644
71.0	5.513645
72.0	5.513645
73.0	5.513646
74.0	5.513646
75.0	5.513647
76.0	5.513647
77.0	5.513647
78.0	5.513647
79.0	5.513647
80.0	5.513647
81.0	5.513647
82.0	5.513648
83.0	5.513648
84.0	5.513648
85.0	5.513648
86.0	5.513648
87.0	5.513648
88.0	5.513648
89.0	5.513648
90.0	5.513648
91.0	5.513648
92.0	5.513648
93.0	5.513648
94.0	5.513648
95.0	5.513648
96.0	5.513648
97.0	5.513648
98.0	5.513648
99.0	5.513648
100.0	5.513648