## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[2017-07-17-FrozKera-DMSO-24h-a_R1.2x36mers.hg19-male.nochrM.bam] OUTPUT=2017-07-17-FrozKera-DMSO-24h-a_R1.2x36mers.hg19-male.nochrM.dedup.bam METRICS_FILE=2017-07-17-FrozKera-DMSO-24h-a_R1.2x36mers.hg19-male.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 22 23:44:51 PDT 2017

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	23744696	0	0	2632156	387977	0.110852	113627664

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.014937
2.0	1.838477
3.0	2.506714
4.0	3.048935
5.0	3.488903
6.0	3.845903
7.0	4.13558
8.0	4.370629
9.0	4.561353
10.0	4.71611
11.0	4.841684
12.0	4.943576
13.0	5.026254
14.0	5.09334
15.0	5.147775
16.0	5.191945
17.0	5.227785
18.0	5.256867
19.0	5.280464
20.0	5.299612
21.0	5.315148
22.0	5.327755
23.0	5.337984
24.0	5.346284
25.0	5.353019
26.0	5.358484
27.0	5.362919
28.0	5.366517
29.0	5.369436
30.0	5.371805
31.0	5.373728
32.0	5.375287
33.0	5.376553
34.0	5.37758
35.0	5.378413
36.0	5.379089
37.0	5.379638
38.0	5.380083
39.0	5.380444
40.0	5.380738
41.0	5.380975
42.0	5.381168
43.0	5.381325
44.0	5.381452
45.0	5.381555
46.0	5.381639
47.0	5.381707
48.0	5.381762
49.0	5.381806
50.0	5.381843
51.0	5.381872
52.0	5.381896
53.0	5.381915
54.0	5.381931
55.0	5.381944
56.0	5.381954
57.0	5.381963
58.0	5.381969
59.0	5.381975
60.0	5.381979
61.0	5.381983
62.0	5.381986
63.0	5.381988
64.0	5.38199
65.0	5.381992
66.0	5.381993
67.0	5.381994
68.0	5.381995
69.0	5.381996
70.0	5.381996
71.0	5.381997
72.0	5.381997
73.0	5.381997
74.0	5.381998
75.0	5.381998
76.0	5.381998
77.0	5.381998
78.0	5.381998
79.0	5.381998
80.0	5.381998
81.0	5.381999
82.0	5.381999
83.0	5.381999
84.0	5.381999
85.0	5.381999
86.0	5.381999
87.0	5.381999
88.0	5.381999
89.0	5.381999
90.0	5.381999
91.0	5.381999
92.0	5.381999
93.0	5.381999
94.0	5.381999
95.0	5.381999
96.0	5.381999
97.0	5.381999
98.0	5.381999
99.0	5.381999
100.0	5.381999