## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[2017-07-17-FrozKera-DMSO-0h-b_R1.2x36mers.hg19-male.nochrM.bam] OUTPUT=2017-07-17-FrozKera-DMSO-0h-b_R1.2x36mers.hg19-male.nochrM.dedup.bam METRICS_FILE=2017-07-17-FrozKera-DMSO-0h-b_R1.2x36mers.hg19-male.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 22 23:31:22 PDT 2017

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	27018597	0	0	8747044	886552	0.323742	34202155

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.02231
2.0	1.486294
3.0	1.696878
4.0	1.792454
5.0	1.835832
6.0	1.855519
7.0	1.864454
8.0	1.86851
9.0	1.87035
10.0	1.871186
11.0	1.871565
12.0	1.871737
13.0	1.871815
14.0	1.871851
15.0	1.871867
16.0	1.871874
17.0	1.871877
18.0	1.871879
19.0	1.871879
20.0	1.87188
21.0	1.87188
22.0	1.87188
23.0	1.87188
24.0	1.87188
25.0	1.87188
26.0	1.87188
27.0	1.87188
28.0	1.87188
29.0	1.87188
30.0	1.87188
31.0	1.87188
32.0	1.87188
33.0	1.87188
34.0	1.87188
35.0	1.87188
36.0	1.87188
37.0	1.87188
38.0	1.87188
39.0	1.87188
40.0	1.87188
41.0	1.87188
42.0	1.87188
43.0	1.87188
44.0	1.87188
45.0	1.87188
46.0	1.87188
47.0	1.87188
48.0	1.87188
49.0	1.87188
50.0	1.87188
51.0	1.87188
52.0	1.87188
53.0	1.87188
54.0	1.87188
55.0	1.87188
56.0	1.87188
57.0	1.87188
58.0	1.87188
59.0	1.87188
60.0	1.87188
61.0	1.87188
62.0	1.87188
63.0	1.87188
64.0	1.87188
65.0	1.87188
66.0	1.87188
67.0	1.87188
68.0	1.87188
69.0	1.87188
70.0	1.87188
71.0	1.87188
72.0	1.87188
73.0	1.87188
74.0	1.87188
75.0	1.87188
76.0	1.87188
77.0	1.87188
78.0	1.87188
79.0	1.87188
80.0	1.87188
81.0	1.87188
82.0	1.87188
83.0	1.87188
84.0	1.87188
85.0	1.87188
86.0	1.87188
87.0	1.87188
88.0	1.87188
89.0	1.87188
90.0	1.87188
91.0	1.87188
92.0	1.87188
93.0	1.87188
94.0	1.87188
95.0	1.87188
96.0	1.87188
97.0	1.87188
98.0	1.87188
99.0	1.87188
100.0	1.87188