## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[2017-07-17-FrozKera-DMSO-0h-a_R1.2x36mers.hg19-male.nochrM.bam] OUTPUT=2017-07-17-FrozKera-DMSO-0h-a_R1.2x36mers.hg19-male.nochrM.dedup.bam METRICS_FILE=2017-07-17-FrozKera-DMSO-0h-a_R1.2x36mers.hg19-male.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Jul 22 23:31:22 PDT 2017

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	26580758	0	0	3599066	481238	0.135401	100355249

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.016106
2.0	1.795773
3.0	2.394017
4.0	2.853055
5.0	3.205279
6.0	3.475543
7.0	3.682919
8.0	3.84204
9.0	3.964135
10.0	4.05782
11.0	4.129705
12.0	4.184863
13.0	4.227186
14.0	4.259661
15.0	4.284579
16.0	4.303699
17.0	4.31837
18.0	4.329627
19.0	4.338265
20.0	4.344892
21.0	4.349978
22.0	4.35388
23.0	4.356874
24.0	4.359172
25.0	4.360935
26.0	4.362287
27.0	4.363325
28.0	4.364122
29.0	4.364733
30.0	4.365201
31.0	4.365561
32.0	4.365837
33.0	4.366049
34.0	4.366212
35.0	4.366336
36.0	4.366432
37.0	4.366505
38.0	4.366562
39.0	4.366605
40.0	4.366638
41.0	4.366664
42.0	4.366683
43.0	4.366698
44.0	4.36671
45.0	4.366719
46.0	4.366725
47.0	4.36673
48.0	4.366734
49.0	4.366738
50.0	4.36674
51.0	4.366742
52.0	4.366743
53.0	4.366744
54.0	4.366745
55.0	4.366746
56.0	4.366746
57.0	4.366746
58.0	4.366747
59.0	4.366747
60.0	4.366747
61.0	4.366747
62.0	4.366747
63.0	4.366747
64.0	4.366747
65.0	4.366747
66.0	4.366748
67.0	4.366748
68.0	4.366748
69.0	4.366748
70.0	4.366748
71.0	4.366748
72.0	4.366748
73.0	4.366748
74.0	4.366748
75.0	4.366748
76.0	4.366748
77.0	4.366748
78.0	4.366748
79.0	4.366748
80.0	4.366748
81.0	4.366748
82.0	4.366748
83.0	4.366748
84.0	4.366748
85.0	4.366748
86.0	4.366748
87.0	4.366748
88.0	4.366748
89.0	4.366748
90.0	4.366748
91.0	4.366748
92.0	4.366748
93.0	4.366748
94.0	4.366748
95.0	4.366748
96.0	4.366748
97.0	4.366748
98.0	4.366748
99.0	4.366748
100.0	4.366748