tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks0 --fastq-filenames guppy-input-chunks0-output/all.fastq --sequencing-summary-filenames guppy-input-chunks0-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks100 --fastq-filenames guppy-input-chunks100-output/all.fastq --sequencing-summary-filenames guppy-input-chunks100-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks101 --fastq-filenames guppy-input-chunks101-output/all.fastq --sequencing-summary-filenames guppy-input-chunks101-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks102 --fastq-filenames guppy-input-chunks102-output/all.fastq --sequencing-summary-filenames guppy-input-chunks102-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks103 --fastq-filenames guppy-input-chunks103-output/all.fastq --sequencing-summary-filenames guppy-input-chunks103-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks104 --fastq-filenames guppy-input-chunks104-output/all.fastq --sequencing-summary-filenames guppy-input-chunks104-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks105 --fastq-filenames guppy-input-chunks105-output/all.fastq --sequencing-summary-filenames guppy-input-chunks105-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks106 --fastq-filenames guppy-input-chunks106-output/all.fastq --sequencing-summary-filenames guppy-input-chunks106-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks107 --fastq-filenames guppy-input-chunks107-output/all.fastq --sequencing-summary-filenames guppy-input-chunks107-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks108 --fastq-filenames guppy-input-chunks108-output/all.fastq --sequencing-summary-filenames guppy-input-chunks108-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks109 --fastq-filenames guppy-input-chunks109-output/all.fastq --sequencing-summary-filenames guppy-input-chunks109-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks10 --fastq-filenames guppy-input-chunks10-output/all.fastq --sequencing-summary-filenames guppy-input-chunks10-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks110 --fastq-filenames guppy-input-chunks110-output/all.fastq --sequencing-summary-filenames guppy-input-chunks110-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks111 --fastq-filenames guppy-input-chunks111-output/all.fastq --sequencing-summary-filenames guppy-input-chunks111-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks112 --fastq-filenames guppy-input-chunks112-output/all.fastq --sequencing-summary-filenames guppy-input-chunks112-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks113 --fastq-filenames guppy-input-chunks113-output/all.fastq --sequencing-summary-filenames guppy-input-chunks113-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks114 --fastq-filenames guppy-input-chunks114-output/all.fastq --sequencing-summary-filenames guppy-input-chunks114-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks115 --fastq-filenames guppy-input-chunks115-output/all.fastq --sequencing-summary-filenames guppy-input-chunks115-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks116 --fastq-filenames guppy-input-chunks116-output/all.fastq --sequencing-summary-filenames guppy-input-chunks116-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks117 --fastq-filenames guppy-input-chunks117-output/all.fastq --sequencing-summary-filenames guppy-input-chunks117-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks118 --fastq-filenames guppy-input-chunks118-output/all.fastq --sequencing-summary-filenames guppy-input-chunks118-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks119 --fastq-filenames guppy-input-chunks119-output/all.fastq --sequencing-summary-filenames guppy-input-chunks119-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks11 --fastq-filenames guppy-input-chunks11-output/all.fastq --sequencing-summary-filenames guppy-input-chunks11-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks120 --fastq-filenames guppy-input-chunks120-output/all.fastq --sequencing-summary-filenames guppy-input-chunks120-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks121 --fastq-filenames guppy-input-chunks121-output/all.fastq --sequencing-summary-filenames guppy-input-chunks121-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks122 --fastq-filenames guppy-input-chunks122-output/all.fastq --sequencing-summary-filenames guppy-input-chunks122-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks123 --fastq-filenames guppy-input-chunks123-output/all.fastq --sequencing-summary-filenames guppy-input-chunks123-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks124 --fastq-filenames guppy-input-chunks124-output/all.fastq --sequencing-summary-filenames guppy-input-chunks124-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks125 --fastq-filenames guppy-input-chunks125-output/all.fastq --sequencing-summary-filenames guppy-input-chunks125-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks126 --fastq-filenames guppy-input-chunks126-output/all.fastq --sequencing-summary-filenames guppy-input-chunks126-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks127 --fastq-filenames guppy-input-chunks127-output/all.fastq --sequencing-summary-filenames guppy-input-chunks127-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks12 --fastq-filenames guppy-input-chunks12-output/all.fastq --sequencing-summary-filenames guppy-input-chunks12-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks13 --fastq-filenames guppy-input-chunks13-output/all.fastq --sequencing-summary-filenames guppy-input-chunks13-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks14 --fastq-filenames guppy-input-chunks14-output/all.fastq --sequencing-summary-filenames guppy-input-chunks14-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks15 --fastq-filenames guppy-input-chunks15-output/all.fastq --sequencing-summary-filenames guppy-input-chunks15-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks16 --fastq-filenames guppy-input-chunks16-output/all.fastq --sequencing-summary-filenames guppy-input-chunks16-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks17 --fastq-filenames guppy-input-chunks17-output/all.fastq --sequencing-summary-filenames guppy-input-chunks17-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks18 --fastq-filenames guppy-input-chunks18-output/all.fastq --sequencing-summary-filenames guppy-input-chunks18-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks19 --fastq-filenames guppy-input-chunks19-output/all.fastq --sequencing-summary-filenames guppy-input-chunks19-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks1 --fastq-filenames guppy-input-chunks1-output/all.fastq --sequencing-summary-filenames guppy-input-chunks1-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks20 --fastq-filenames guppy-input-chunks20-output/all.fastq --sequencing-summary-filenames guppy-input-chunks20-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks21 --fastq-filenames guppy-input-chunks21-output/all.fastq --sequencing-summary-filenames guppy-input-chunks21-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks22 --fastq-filenames guppy-input-chunks22-output/all.fastq --sequencing-summary-filenames guppy-input-chunks22-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks23 --fastq-filenames guppy-input-chunks23-output/all.fastq --sequencing-summary-filenames guppy-input-chunks23-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks24 --fastq-filenames guppy-input-chunks24-output/all.fastq --sequencing-summary-filenames guppy-input-chunks24-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks25 --fastq-filenames guppy-input-chunks25-output/all.fastq --sequencing-summary-filenames guppy-input-chunks25-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks26 --fastq-filenames guppy-input-chunks26-output/all.fastq --sequencing-summary-filenames guppy-input-chunks26-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks27 --fastq-filenames guppy-input-chunks27-output/all.fastq --sequencing-summary-filenames guppy-input-chunks27-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks28 --fastq-filenames guppy-input-chunks28-output/all.fastq --sequencing-summary-filenames guppy-input-chunks28-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks29 --fastq-filenames guppy-input-chunks29-output/all.fastq --sequencing-summary-filenames guppy-input-chunks29-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks2 --fastq-filenames guppy-input-chunks2-output/all.fastq --sequencing-summary-filenames guppy-input-chunks2-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks30 --fastq-filenames guppy-input-chunks30-output/all.fastq --sequencing-summary-filenames guppy-input-chunks30-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks31 --fastq-filenames guppy-input-chunks31-output/all.fastq --sequencing-summary-filenames guppy-input-chunks31-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks32 --fastq-filenames guppy-input-chunks32-output/all.fastq --sequencing-summary-filenames guppy-input-chunks32-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks33 --fastq-filenames guppy-input-chunks33-output/all.fastq --sequencing-summary-filenames guppy-input-chunks33-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks34 --fastq-filenames guppy-input-chunks34-output/all.fastq --sequencing-summary-filenames guppy-input-chunks34-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks35 --fastq-filenames guppy-input-chunks35-output/all.fastq --sequencing-summary-filenames guppy-input-chunks35-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks36 --fastq-filenames guppy-input-chunks36-output/all.fastq --sequencing-summary-filenames guppy-input-chunks36-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks37 --fastq-filenames guppy-input-chunks37-output/all.fastq --sequencing-summary-filenames guppy-input-chunks37-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks38 --fastq-filenames guppy-input-chunks38-output/all.fastq --sequencing-summary-filenames guppy-input-chunks38-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks39 --fastq-filenames guppy-input-chunks39-output/all.fastq --sequencing-summary-filenames guppy-input-chunks39-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks3 --fastq-filenames guppy-input-chunks3-output/all.fastq --sequencing-summary-filenames guppy-input-chunks3-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks40 --fastq-filenames guppy-input-chunks40-output/all.fastq --sequencing-summary-filenames guppy-input-chunks40-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks41 --fastq-filenames guppy-input-chunks41-output/all.fastq --sequencing-summary-filenames guppy-input-chunks41-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks42 --fastq-filenames guppy-input-chunks42-output/all.fastq --sequencing-summary-filenames guppy-input-chunks42-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks43 --fastq-filenames guppy-input-chunks43-output/all.fastq --sequencing-summary-filenames guppy-input-chunks43-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks44 --fastq-filenames guppy-input-chunks44-output/all.fastq --sequencing-summary-filenames guppy-input-chunks44-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks45 --fastq-filenames guppy-input-chunks45-output/all.fastq --sequencing-summary-filenames guppy-input-chunks45-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks46 --fastq-filenames guppy-input-chunks46-output/all.fastq --sequencing-summary-filenames guppy-input-chunks46-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks47 --fastq-filenames guppy-input-chunks47-output/all.fastq --sequencing-summary-filenames guppy-input-chunks47-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks48 --fastq-filenames guppy-input-chunks48-output/all.fastq --sequencing-summary-filenames guppy-input-chunks48-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks49 --fastq-filenames guppy-input-chunks49-output/all.fastq --sequencing-summary-filenames guppy-input-chunks49-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks4 --fastq-filenames guppy-input-chunks4-output/all.fastq --sequencing-summary-filenames guppy-input-chunks4-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks50 --fastq-filenames guppy-input-chunks50-output/all.fastq --sequencing-summary-filenames guppy-input-chunks50-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks51 --fastq-filenames guppy-input-chunks51-output/all.fastq --sequencing-summary-filenames guppy-input-chunks51-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks52 --fastq-filenames guppy-input-chunks52-output/all.fastq --sequencing-summary-filenames guppy-input-chunks52-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks53 --fastq-filenames guppy-input-chunks53-output/all.fastq --sequencing-summary-filenames guppy-input-chunks53-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks54 --fastq-filenames guppy-input-chunks54-output/all.fastq --sequencing-summary-filenames guppy-input-chunks54-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks55 --fastq-filenames guppy-input-chunks55-output/all.fastq --sequencing-summary-filenames guppy-input-chunks55-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks56 --fastq-filenames guppy-input-chunks56-output/all.fastq --sequencing-summary-filenames guppy-input-chunks56-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks57 --fastq-filenames guppy-input-chunks57-output/all.fastq --sequencing-summary-filenames guppy-input-chunks57-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks58 --fastq-filenames guppy-input-chunks58-output/all.fastq --sequencing-summary-filenames guppy-input-chunks58-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks59 --fastq-filenames guppy-input-chunks59-output/all.fastq --sequencing-summary-filenames guppy-input-chunks59-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks5 --fastq-filenames guppy-input-chunks5-output/all.fastq --sequencing-summary-filenames guppy-input-chunks5-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks60 --fastq-filenames guppy-input-chunks60-output/all.fastq --sequencing-summary-filenames guppy-input-chunks60-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks61 --fastq-filenames guppy-input-chunks61-output/all.fastq --sequencing-summary-filenames guppy-input-chunks61-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks62 --fastq-filenames guppy-input-chunks62-output/all.fastq --sequencing-summary-filenames guppy-input-chunks62-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks63 --fastq-filenames guppy-input-chunks63-output/all.fastq --sequencing-summary-filenames guppy-input-chunks63-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks64 --fastq-filenames guppy-input-chunks64-output/all.fastq --sequencing-summary-filenames guppy-input-chunks64-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks65 --fastq-filenames guppy-input-chunks65-output/all.fastq --sequencing-summary-filenames guppy-input-chunks65-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks66 --fastq-filenames guppy-input-chunks66-output/all.fastq --sequencing-summary-filenames guppy-input-chunks66-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks67 --fastq-filenames guppy-input-chunks67-output/all.fastq --sequencing-summary-filenames guppy-input-chunks67-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks68 --fastq-filenames guppy-input-chunks68-output/all.fastq --sequencing-summary-filenames guppy-input-chunks68-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks69 --fastq-filenames guppy-input-chunks69-output/all.fastq --sequencing-summary-filenames guppy-input-chunks69-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks6 --fastq-filenames guppy-input-chunks6-output/all.fastq --sequencing-summary-filenames guppy-input-chunks6-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks70 --fastq-filenames guppy-input-chunks70-output/all.fastq --sequencing-summary-filenames guppy-input-chunks70-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks71 --fastq-filenames guppy-input-chunks71-output/all.fastq --sequencing-summary-filenames guppy-input-chunks71-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks72 --fastq-filenames guppy-input-chunks72-output/all.fastq --sequencing-summary-filenames guppy-input-chunks72-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks73 --fastq-filenames guppy-input-chunks73-output/all.fastq --sequencing-summary-filenames guppy-input-chunks73-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks74 --fastq-filenames guppy-input-chunks74-output/all.fastq --sequencing-summary-filenames guppy-input-chunks74-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks75 --fastq-filenames guppy-input-chunks75-output/all.fastq --sequencing-summary-filenames guppy-input-chunks75-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks76 --fastq-filenames guppy-input-chunks76-output/all.fastq --sequencing-summary-filenames guppy-input-chunks76-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks77 --fastq-filenames guppy-input-chunks77-output/all.fastq --sequencing-summary-filenames guppy-input-chunks77-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks78 --fastq-filenames guppy-input-chunks78-output/all.fastq --sequencing-summary-filenames guppy-input-chunks78-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks79 --fastq-filenames guppy-input-chunks79-output/all.fastq --sequencing-summary-filenames guppy-input-chunks79-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks7 --fastq-filenames guppy-input-chunks7-output/all.fastq --sequencing-summary-filenames guppy-input-chunks7-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks80 --fastq-filenames guppy-input-chunks80-output/all.fastq --sequencing-summary-filenames guppy-input-chunks80-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks81 --fastq-filenames guppy-input-chunks81-output/all.fastq --sequencing-summary-filenames guppy-input-chunks81-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks82 --fastq-filenames guppy-input-chunks82-output/all.fastq --sequencing-summary-filenames guppy-input-chunks82-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks83 --fastq-filenames guppy-input-chunks83-output/all.fastq --sequencing-summary-filenames guppy-input-chunks83-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks84 --fastq-filenames guppy-input-chunks84-output/all.fastq --sequencing-summary-filenames guppy-input-chunks84-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks85 --fastq-filenames guppy-input-chunks85-output/all.fastq --sequencing-summary-filenames guppy-input-chunks85-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks86 --fastq-filenames guppy-input-chunks86-output/all.fastq --sequencing-summary-filenames guppy-input-chunks86-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks87 --fastq-filenames guppy-input-chunks87-output/all.fastq --sequencing-summary-filenames guppy-input-chunks87-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks88 --fastq-filenames guppy-input-chunks88-output/all.fastq --sequencing-summary-filenames guppy-input-chunks88-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks89 --fastq-filenames guppy-input-chunks89-output/all.fastq --sequencing-summary-filenames guppy-input-chunks89-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks8 --fastq-filenames guppy-input-chunks8-output/all.fastq --sequencing-summary-filenames guppy-input-chunks8-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks90 --fastq-filenames guppy-input-chunks90-output/all.fastq --sequencing-summary-filenames guppy-input-chunks90-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks91 --fastq-filenames guppy-input-chunks91-output/all.fastq --sequencing-summary-filenames guppy-input-chunks91-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks92 --fastq-filenames guppy-input-chunks92-output/all.fastq --sequencing-summary-filenames guppy-input-chunks92-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks93 --fastq-filenames guppy-input-chunks93-output/all.fastq --sequencing-summary-filenames guppy-input-chunks93-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks94 --fastq-filenames guppy-input-chunks94-output/all.fastq --sequencing-summary-filenames guppy-input-chunks94-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks95 --fastq-filenames guppy-input-chunks95-output/all.fastq --sequencing-summary-filenames guppy-input-chunks95-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks96 --fastq-filenames guppy-input-chunks96-output/all.fastq --sequencing-summary-filenames guppy-input-chunks96-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks97 --fastq-filenames guppy-input-chunks97-output/all.fastq --sequencing-summary-filenames guppy-input-chunks97-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks98 --fastq-filenames guppy-input-chunks98-output/all.fastq --sequencing-summary-filenames guppy-input-chunks98-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks99 --fastq-filenames guppy-input-chunks99-output/all.fastq --sequencing-summary-filenames guppy-input-chunks99-output/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir guppy-input-chunks9 --fastq-filenames guppy-input-chunks9-output/all.fastq --sequencing-summary-filenames guppy-input-chunks9-output/sequencing_summary.txt