Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2021-01-13-GM18278-hg19-reprocessing/juicer-L1971-L1972-L1973-L11974-GM12878_HiKAS_10M-hg19 -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2021-01-13-GM18278-hg19-reprocessing/juicer-L1971-L1972-L1973-L11974-GM12878_HiKAS_10M-hg19 -p /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-male.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg19/bwa-indexes/hg19-male_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg19/bwa-indexes/hg19-male.fa                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  513,627,084
 Normal Paired: 482,096,687 (93.86%)
 Chimeric Paired: 1,189,328 (0.23%)
 Chimeric Ambiguous: 855,580 (0.17%)
 Unmapped: 29,485,489 (5.74%)
 Ligation Motif Present: 2,973,512 (0.58%)
Alignable (Normal+Chimeric Paired): 483,286,015 (94.09%)
Unique Reads: 359,615,294 (70.01%)
PCR Duplicates: 123,292,798 (24.00%)
Optical Duplicates: 377,923 (0.07%)
Library Complexity Estimate: 776,769,301
Intra-fragment Reads: 188,076,117 (36.62% / 52.30%)
Below MAPQ Threshold: 37,260,701 (7.25% / 10.36%)
Hi-C Contacts: 134,278,476 (26.14% / 37.34%)
 Ligation Motif Present: 1,612,385  (0.31% / 0.45%)
 3' Bias (Long Range): 29% - 71%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 4,801,053  (0.93% / 1.34%)
Intra-chromosomal: 129,477,423  (25.21% / 36.00%)
Short Range (<20Kb): 127,740,686  (24.87% / 35.52%)
Long Range (>20Kb): 1,736,421  (0.34% / 0.48%)