Index of /kundaje/marinovg/oak/various/ENCODE4/ssDNA/2020-11-07-NextSeq-run

[ICO]NameLast modifiedSizeDescription

[PARENTDIR]Parent Directory  -  
[   ]2020-11-07-ATAC-seq-DVNP.pdf2020-11-12 23:47 2.2M 
[   ]2020-11-07-ATAC-seq-DVNP.pptx2020-11-12 23:47 2.2M 
[   ]2020-11-07-NextSeq-run-FS-test-yeast.pdf2020-11-10 04:48 3.9M 
[   ]2020-11-07-NextSeq-run-FS-test-yeast.pptx2020-11-10 04:48 3.6M 
[   ]201108_NB551514_0494_AHY723BGXG.zip---moved-to-wjg-seqruns2022-04-05 23:01 16K 
[TXT]ATACTSSscore_DVNP.txt2020-11-12 23:07 5.1K 
[TXT]ATACTSSscore_FS.txt2020-11-10 02:59 1.2K 
[TXT]ATACTSSscore_Matt.txt2020-11-09 19:17 1.9K 
[TXT]PEInsertDistFromBAM.sh2020-11-09 20:07 8.1K 
[TXT]SAMstats.sh2020-11-09 20:07 31K 
[   ]SAMstats_ATAC_DVNP-files.tar.gz2020-11-09 19:52 3.1K 
[TXT]SAMstats_ATAC_DVNP.a.dedup.table2020-11-09 19:52 1.1K 
[TXT]SAMstats_ATAC_DVNP.a.nochrM.table2020-11-09 19:52 1.0K 
[TXT]SAMstats_ATAC_DVNP.a.table2020-11-09 19:52 1.4K 
[   ]SAMstats_ATAC_DVNP.chrM.table2020-11-09 19:52 863  
[   ]SAMstats_ATAC_DVNP.files2020-11-09 19:51 9.6K 
[   ]SAMstats_ATAC_DVNP.table2020-11-09 19:51 7.1K 
[   ]SAMstats_ATAC_DVNP.unique.nochrM.dedup.table2020-11-09 19:52 1.1K 
[   ]SAMstats_ATAC_DVNP.unique.nochrM.table2020-11-09 19:52 1.0K 
[   ]SAMstats_ATAC_DVNP_joint-files.tar.gz2020-11-10 06:53 3.5K 
[   ]SAMstats_ATAC_DVNP_joint.1x36mers.C_glabrata_CBS138_current_chromosomes.unique.nochrM.table2020-11-10 06:54 1.4K 
[   ]SAMstats_ATAC_DVNP_joint.1x36mers.sacCer3.unique.nochrM.table2020-11-10 06:54 1.0K 
[   ]SAMstats_ATAC_DVNP_joint.2x36mers.C_glabrata_CBS138_current_chromosomes.nochrM.ERMTOC.table2020-11-10 06:54 1.4K 
[   ]SAMstats_ATAC_DVNP_joint.2x36mers.sacCer3.nochrM.ERMTOC.table2020-11-10 06:54 1.1K 
[   ]SAMstats_ATAC_DVNP_joint.files2020-11-10 06:53 10K 
[   ]SAMstats_ATAC_DVNP_joint.table2020-11-10 06:53 7.2K 
[   ]SAMstats_ATAC_Matt-files.tar.gz2020-11-09 19:08 4.0K 
[TXT]SAMstats_ATAC_Matt.a.dedup.table2020-11-09 19:11 1.4K 
[TXT]SAMstats_ATAC_Matt.a.nochrM.table2020-11-09 19:11 1.3K 
[TXT]SAMstats_ATAC_Matt.a.table2020-11-09 19:10 1.3K 
[   ]SAMstats_ATAC_Matt.chrM.table2020-11-09 19:09 1.1K 
[   ]SAMstats_ATAC_Matt.files2020-11-09 19:08 13K 
[   ]SAMstats_ATAC_Matt.table2020-11-09 19:08 9.0K 
[   ]SAMstats_ATAC_Matt.unique.nochrM.dedup.table2020-11-09 19:09 1.4K 
[   ]SAMstats_ATAC_Matt.unique.nochrM.table2020-11-09 19:09 1.3K 
[   ]SAMstats_FS-files.tar.gz2020-11-10 02:52 2.4K 
[TXT]SAMstats_FS.a.dedup.table2020-11-10 02:52 835  
[TXT]SAMstats_FS.a.nochrM.table2020-11-10 02:52 785  
[TXT]SAMstats_FS.a.table2020-11-10 02:52 852  
[   ]SAMstats_FS.chrM.table2020-11-10 02:52 679  
[   ]SAMstats_FS.files2020-11-10 02:52 7.0K 
[   ]SAMstats_FS.table2020-11-10 02:52 5.4K 
[   ]SAMstats_FS.unique.nochrM.dedup.table2020-11-10 02:52 835  
[   ]SAMstats_FS.unique.nochrM.table2020-11-10 02:52 781  
[TXT]SampleSheet.csv2020-11-09 02:32 2.6K 
[   ]all.201108_NB551514_0494_AHY723BGXG.fastq.lines2020-11-09 02:46 11  
[TXT]columnrename.sh2020-11-09 20:07 7.9K 
[   ]commands.config2020-11-09 20:06 2.1K 
[   ]cumulativeGeneProfiles.Candida.500bp.smooth10.table2020-11-10 02:36 502K 
[   ]cumulativeGeneProfiles.Candida.500bp.table2020-11-10 02:36 502K 
[   ]cumulativeGeneProfiles.Candida.1000bp.smooth10.table2020-11-10 02:37 1.0M 
[   ]cumulativeGeneProfiles.Candida.1000bp.table2020-11-10 02:36 1.0M 
[   ]cumulativeGeneProfiles.Candida.files2020-11-09 20:07 1.4K 
[   ]cumulativeGeneProfiles.S_pombe.500bp.smooth10.table2020-11-10 02:35 13K 
[   ]cumulativeGeneProfiles.S_pombe.500bp.table2020-11-10 02:35 13K 
[   ]cumulativeGeneProfiles.S_pombe.1000bp.smooth10.table2020-11-10 02:35 28K 
[   ]cumulativeGeneProfiles.S_pombe.1000bp.table2020-11-10 02:35 28K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile1.500bp.smooth10.table2020-11-10 02:35 13K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile1.500bp.table2020-11-10 02:35 13K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile1.1000bp.smooth10.table2020-11-10 02:36 28K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile1.1000bp.table2020-11-10 02:35 28K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile5.500bp.smooth10.table2020-11-10 02:36 13K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile5.500bp.table2020-11-10 02:36 13K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile5.1000bp.smooth10.table2020-11-10 02:36 28K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile5.1000bp.table2020-11-10 02:36 28K 
[   ]cumulativeGeneProfiles.S_pombe.files2020-11-09 20:07 0  
[   ]cumulativeGeneProfiles.S_pombe.mRNA.500bp.smooth10.table2020-11-10 02:36 13K 
[   ]cumulativeGeneProfiles.S_pombe.mRNA.500bp.table2020-11-10 02:36 13K 
[   ]cumulativeGeneProfiles.S_pombe.mRNA.1000bp.smooth10.table2020-11-10 02:36 28K 
[   ]cumulativeGeneProfiles.S_pombe.mRNA.1000bp.table2020-11-10 02:36 28K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.smooth10.table2020-11-10 02:37 502K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.table2020-11-10 02:37 502K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.smooth10.table2020-11-10 02:37 1.0M 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.table2020-11-10 02:36 1.0M 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2020-11-10 02:36 502K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table2020-11-10 02:36 502K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table2020-11-10 02:36 1.0M 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table2020-11-10 02:35 1.0M 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2020-11-10 02:36 502K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table2020-11-10 02:36 502K 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2020-11-10 02:36 1.0M 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table2020-11-10 02:36 1.0M 
[   ]cumulativeGeneProfiles.sacCer3.files2020-11-09 20:07 1.1K 
[   ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.smooth10.table2020-11-10 02:37 502K 
[   ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.table2020-11-10 02:37 502K 
[   ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.smooth10.table2020-11-10 02:37 1.0M 
[   ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.table2020-11-10 02:37 1.0M 
[   ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.smooth10.table2020-11-10 02:35 170K 
[   ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.table2020-11-10 02:35 166K 
[   ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.smooth10.table2020-11-10 02:36 372K 
[   ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.table2020-11-10 02:35 357K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.smooth10.table2020-11-10 02:37 502K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.table2020-11-10 02:37 502K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.smooth10.table2020-11-10 02:38 1.0M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.table2020-11-10 02:37 1.0M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files2020-11-09 20:07 1.4K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.500bp.smooth10.table2020-11-10 02:36 13K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.500bp.table2020-11-10 02:36 13K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.1000bp.smooth10.table2020-11-10 02:36 28K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.1000bp.table2020-11-10 02:36 28K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.500bp.smooth10.table2020-11-10 02:36 13K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.500bp.table2020-11-10 02:36 13K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.1000bp.smooth10.table2020-11-10 02:36 28K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.1000bp.table2020-11-10 02:36 28K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile5.500bp.smooth10.table2020-11-10 02:36 13K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile5.500bp.table2020-11-10 02:36 13K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile5.1000bp.smooth10.table2020-11-10 02:36 28K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile5.1000bp.table2020-11-10 02:36 28K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.files2020-11-09 20:07 0  
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.mRNA.500bp.smooth10.table2020-11-10 02:36 13K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.mRNA.500bp.table2020-11-10 02:36 13K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.mRNA.1000bp.smooth10.table2020-11-10 02:36 28K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.mRNA.1000bp.table2020-11-10 02:36 28K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.500bp.smooth10.table2020-11-10 02:38 502K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.500bp.table2020-11-10 02:37 502K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.1000bp.smooth10.table2020-11-10 02:38 1.0M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.1000bp.table2020-11-10 02:38 1.0M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2020-11-10 02:37 502K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.500bp.table2020-11-10 02:37 502K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table2020-11-10 02:37 1.0M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.1000bp.table2020-11-10 02:37 1.0M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2020-11-10 02:37 502K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.500bp.table2020-11-10 02:37 502K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2020-11-10 02:37 1.0M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.1000bp.table2020-11-10 02:37 1.0M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files2020-11-09 20:07 1.3K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.500bp.smooth10.table2020-11-10 02:37 502K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.500bp.table2020-11-10 02:37 502K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.1000bp.smooth10.table2020-11-10 02:37 1.0M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.1000bp.table2020-11-10 02:37 1.0M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.500bp.smooth10.table2020-11-10 02:36 193K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.500bp.table2020-11-10 02:36 183K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.1000bp.smooth10.table2020-11-10 02:36 396K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.1000bp.table2020-11-10 02:36 376K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.smooth10.table2020-11-10 02:38 503K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.table2020-11-10 02:38 503K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.1000bp.smooth10.table2020-11-10 02:38 1.0M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.1000bp.table2020-11-10 02:37 1.0M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2020-11-10 02:36 502K 
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[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table2020-11-10 02:36 1.0M 
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[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files2020-11-09 20:07 1.1K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.500bp.smooth10.table2020-11-10 02:37 508K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.500bp.table2020-11-10 02:37 508K 
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[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.500bp.smooth10.table2020-11-10 02:36 209K 
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[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.1000bp.table2020-11-10 02:36 382K 
[TXT]filterchrM.sh2020-11-09 20:07 7.4K 
[TXT]makewiggle.sh2020-11-09 20:07 40K 
[TXT]map.sh2020-11-09 20:07 20K 
[TXT]samtools-index.sh2020-11-09 20:07 6.1K 
[   ]signal-around-files.tar.gz2020-11-10 06:43 600K 
[   ]signalAround-TSS.tar.gz2020-11-10 02:47 923K 
[   ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN5.files2020-11-09 20:07 1.5K 
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[   ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snRNA.table2020-11-10 02:47 167K 
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[   ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.tRNA.files2020-11-09 20:07 1.4K 
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[   ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snoRNA.table2020-11-10 02:47 167K 
[   ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.tRNA.files2020-11-09 20:07 1.4K 
[   ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.tRNA.table2020-11-10 02:47 167K 
[TXT]signalAroundCoordinate.sh2020-11-09 20:07 55K 
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[   ]z2020-11-10 06:43 5.5K 

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