Index of /kundaje/marinovg/oak/various/ENCODE4/ssDNA/2020-11-07-NextSeq-run
Name
Last modified
Size
Description
Parent Directory
-
2020-11-07-ATAC-seq-DVNP.pdf
2020-11-12 23:47
2.2M
2020-11-07-ATAC-seq-DVNP.pptx
2020-11-12 23:47
2.2M
2020-11-07-NextSeq-run-FS-test-yeast.pdf
2020-11-10 04:48
3.9M
2020-11-07-NextSeq-run-FS-test-yeast.pptx
2020-11-10 04:48
3.6M
201108_NB551514_0494_AHY723BGXG.zip---moved-to-wjg-seqruns
2022-04-05 23:01
16K
ATACTSSscore_DVNP.txt
2020-11-12 23:07
5.1K
ATACTSSscore_FS.txt
2020-11-10 02:59
1.2K
ATACTSSscore_Matt.txt
2020-11-09 19:17
1.9K
PEInsertDistFromBAM.sh
2020-11-09 20:07
8.1K
SAMstats.sh
2020-11-09 20:07
31K
SAMstats_ATAC_DVNP-files.tar.gz
2020-11-09 19:52
3.1K
SAMstats_ATAC_DVNP.a.dedup.table
2020-11-09 19:52
1.1K
SAMstats_ATAC_DVNP.a.nochrM.table
2020-11-09 19:52
1.0K
SAMstats_ATAC_DVNP.a.table
2020-11-09 19:52
1.4K
SAMstats_ATAC_DVNP.chrM.table
2020-11-09 19:52
863
SAMstats_ATAC_DVNP.files
2020-11-09 19:51
9.6K
SAMstats_ATAC_DVNP.table
2020-11-09 19:51
7.1K
SAMstats_ATAC_DVNP.unique.nochrM.dedup.table
2020-11-09 19:52
1.1K
SAMstats_ATAC_DVNP.unique.nochrM.table
2020-11-09 19:52
1.0K
SAMstats_ATAC_DVNP_joint-files.tar.gz
2020-11-10 06:53
3.5K
SAMstats_ATAC_DVNP_joint.1x36mers.C_glabrata_CBS138_current_chromosomes.unique.nochrM.table
2020-11-10 06:54
1.4K
SAMstats_ATAC_DVNP_joint.1x36mers.sacCer3.unique.nochrM.table
2020-11-10 06:54
1.0K
SAMstats_ATAC_DVNP_joint.2x36mers.C_glabrata_CBS138_current_chromosomes.nochrM.ERMTOC.table
2020-11-10 06:54
1.4K
SAMstats_ATAC_DVNP_joint.2x36mers.sacCer3.nochrM.ERMTOC.table
2020-11-10 06:54
1.1K
SAMstats_ATAC_DVNP_joint.files
2020-11-10 06:53
10K
SAMstats_ATAC_DVNP_joint.table
2020-11-10 06:53
7.2K
SAMstats_ATAC_Matt-files.tar.gz
2020-11-09 19:08
4.0K
SAMstats_ATAC_Matt.a.dedup.table
2020-11-09 19:11
1.4K
SAMstats_ATAC_Matt.a.nochrM.table
2020-11-09 19:11
1.3K
SAMstats_ATAC_Matt.a.table
2020-11-09 19:10
1.3K
SAMstats_ATAC_Matt.chrM.table
2020-11-09 19:09
1.1K
SAMstats_ATAC_Matt.files
2020-11-09 19:08
13K
SAMstats_ATAC_Matt.table
2020-11-09 19:08
9.0K
SAMstats_ATAC_Matt.unique.nochrM.dedup.table
2020-11-09 19:09
1.4K
SAMstats_ATAC_Matt.unique.nochrM.table
2020-11-09 19:09
1.3K
SAMstats_FS-files.tar.gz
2020-11-10 02:52
2.4K
SAMstats_FS.a.dedup.table
2020-11-10 02:52
835
SAMstats_FS.a.nochrM.table
2020-11-10 02:52
785
SAMstats_FS.a.table
2020-11-10 02:52
852
SAMstats_FS.chrM.table
2020-11-10 02:52
679
SAMstats_FS.files
2020-11-10 02:52
7.0K
SAMstats_FS.table
2020-11-10 02:52
5.4K
SAMstats_FS.unique.nochrM.dedup.table
2020-11-10 02:52
835
SAMstats_FS.unique.nochrM.table
2020-11-10 02:52
781
SampleSheet.csv
2020-11-09 02:32
2.6K
all.201108_NB551514_0494_AHY723BGXG.fastq.lines
2020-11-09 02:46
11
columnrename.sh
2020-11-09 20:07
7.9K
commands.config
2020-11-09 20:06
2.1K
cumulativeGeneProfiles.Candida.500bp.smooth10.table
2020-11-10 02:36
502K
cumulativeGeneProfiles.Candida.500bp.table
2020-11-10 02:36
502K
cumulativeGeneProfiles.Candida.1000bp.smooth10.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.Candida.1000bp.table
2020-11-10 02:36
1.0M
cumulativeGeneProfiles.Candida.files
2020-11-09 20:07
1.4K
cumulativeGeneProfiles.S_pombe.500bp.smooth10.table
2020-11-10 02:35
13K
cumulativeGeneProfiles.S_pombe.500bp.table
2020-11-10 02:35
13K
cumulativeGeneProfiles.S_pombe.1000bp.smooth10.table
2020-11-10 02:35
28K
cumulativeGeneProfiles.S_pombe.1000bp.table
2020-11-10 02:35
28K
cumulativeGeneProfiles.S_pombe.expression_quintile1.500bp.smooth10.table
2020-11-10 02:35
13K
cumulativeGeneProfiles.S_pombe.expression_quintile1.500bp.table
2020-11-10 02:35
13K
cumulativeGeneProfiles.S_pombe.expression_quintile1.1000bp.smooth10.table
2020-11-10 02:36
28K
cumulativeGeneProfiles.S_pombe.expression_quintile1.1000bp.table
2020-11-10 02:35
28K
cumulativeGeneProfiles.S_pombe.expression_quintile5.500bp.smooth10.table
2020-11-10 02:36
13K
cumulativeGeneProfiles.S_pombe.expression_quintile5.500bp.table
2020-11-10 02:36
13K
cumulativeGeneProfiles.S_pombe.expression_quintile5.1000bp.smooth10.table
2020-11-10 02:36
28K
cumulativeGeneProfiles.S_pombe.expression_quintile5.1000bp.table
2020-11-10 02:36
28K
cumulativeGeneProfiles.S_pombe.files
2020-11-09 20:07
0
cumulativeGeneProfiles.S_pombe.mRNA.500bp.smooth10.table
2020-11-10 02:36
13K
cumulativeGeneProfiles.S_pombe.mRNA.500bp.table
2020-11-10 02:36
13K
cumulativeGeneProfiles.S_pombe.mRNA.1000bp.smooth10.table
2020-11-10 02:36
28K
cumulativeGeneProfiles.S_pombe.mRNA.1000bp.table
2020-11-10 02:36
28K
cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.smooth10.table
2020-11-10 02:37
502K
cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.table
2020-11-10 02:37
502K
cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.smooth10.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.table
2020-11-10 02:36
1.0M
cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table
2020-11-10 02:36
502K
cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table
2020-11-10 02:36
502K
cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table
2020-11-10 02:36
1.0M
cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table
2020-11-10 02:35
1.0M
cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table
2020-11-10 02:36
502K
cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table
2020-11-10 02:36
502K
cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table
2020-11-10 02:36
1.0M
cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table
2020-11-10 02:36
1.0M
cumulativeGeneProfiles.sacCer3.files
2020-11-09 20:07
1.1K
cumulativeGeneProfiles.sacCer3.protein_coding.500bp.smooth10.table
2020-11-10 02:37
502K
cumulativeGeneProfiles.sacCer3.protein_coding.500bp.table
2020-11-10 02:37
502K
cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.smooth10.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.smooth10.table
2020-11-10 02:35
170K
cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.table
2020-11-10 02:35
166K
cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.smooth10.table
2020-11-10 02:36
372K
cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.table
2020-11-10 02:35
357K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.smooth10.table
2020-11-10 02:37
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.table
2020-11-10 02:37
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.smooth10.table
2020-11-10 02:38
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files
2020-11-09 20:07
1.4K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.500bp.smooth10.table
2020-11-10 02:36
13K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.500bp.table
2020-11-10 02:36
13K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.1000bp.smooth10.table
2020-11-10 02:36
28K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.1000bp.table
2020-11-10 02:36
28K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.500bp.smooth10.table
2020-11-10 02:36
13K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.500bp.table
2020-11-10 02:36
13K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.1000bp.smooth10.table
2020-11-10 02:36
28K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.1000bp.table
2020-11-10 02:36
28K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile5.500bp.smooth10.table
2020-11-10 02:36
13K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile5.500bp.table
2020-11-10 02:36
13K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile5.1000bp.smooth10.table
2020-11-10 02:36
28K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile5.1000bp.table
2020-11-10 02:36
28K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.files
2020-11-09 20:07
0
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.mRNA.500bp.smooth10.table
2020-11-10 02:36
13K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.mRNA.500bp.table
2020-11-10 02:36
13K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.mRNA.1000bp.smooth10.table
2020-11-10 02:36
28K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.mRNA.1000bp.table
2020-11-10 02:36
28K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.500bp.smooth10.table
2020-11-10 02:38
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.500bp.table
2020-11-10 02:37
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.1000bp.smooth10.table
2020-11-10 02:38
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.1000bp.table
2020-11-10 02:38
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.500bp.smooth10.table
2020-11-10 02:37
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.500bp.table
2020-11-10 02:37
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.1000bp.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.500bp.smooth10.table
2020-11-10 02:37
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.500bp.table
2020-11-10 02:37
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.1000bp.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files
2020-11-09 20:07
1.3K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.500bp.smooth10.table
2020-11-10 02:37
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.500bp.table
2020-11-10 02:37
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.1000bp.smooth10.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.1000bp.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.500bp.smooth10.table
2020-11-10 02:36
193K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.500bp.table
2020-11-10 02:36
183K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.1000bp.smooth10.table
2020-11-10 02:36
396K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.1000bp.table
2020-11-10 02:36
376K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.smooth10.table
2020-11-10 02:38
503K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.table
2020-11-10 02:38
503K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.1000bp.smooth10.table
2020-11-10 02:38
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.1000bp.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table
2020-11-10 02:36
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table
2020-11-10 02:36
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table
2020-11-10 02:36
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table
2020-11-10 02:37
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table
2020-11-10 02:36
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files
2020-11-09 20:07
1.1K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.500bp.smooth10.table
2020-11-10 02:37
508K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.500bp.table
2020-11-10 02:37
508K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.1000bp.smooth10.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.1000bp.table
2020-11-10 02:37
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.500bp.smooth10.table
2020-11-10 02:36
209K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.500bp.table
2020-11-10 02:36
194K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.1000bp.smooth10.table
2020-11-10 02:36
408K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.1000bp.table
2020-11-10 02:36
382K
filterchrM.sh
2020-11-09 20:07
7.4K
makewiggle.sh
2020-11-09 20:07
40K
map.sh
2020-11-09 20:07
20K
samtools-index.sh
2020-11-09 20:07
6.1K
signal-around-files.tar.gz
2020-11-10 06:43
600K
signalAround-TSS.tar.gz
2020-11-10 02:47
923K
signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN5.files
2020-11-09 20:07
1.5K
signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN5.table
2020-11-10 02:47
151K
signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snRNA.files
2020-11-09 20:07
1.4K
signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snRNA.table
2020-11-10 02:47
167K
signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snoRNA.files
2020-11-09 20:07
1.5K
signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snoRNA.table
2020-11-10 02:47
167K
signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.tRNA.files
2020-11-09 20:07
1.4K
signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.tRNA.table
2020-11-10 02:47
167K
signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.rRNA.RDN5.files
2020-11-09 20:07
1.5K
signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.rRNA.RDN5.table
2020-11-10 02:47
99K
signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snRNA.files
2020-11-09 20:07
1.4K
signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snRNA.table
2020-11-10 02:47
162K
signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snoRNA.files
2020-11-09 20:07
1.4K
signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snoRNA.table
2020-11-10 02:47
167K
signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.tRNA.files
2020-11-09 20:07
1.4K
signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.tRNA.table
2020-11-10 02:47
167K
signalAroundCoordinate.sh
2020-11-09 20:07
55K
wigtobigwig.sh
2020-11-09 20:07
42K
z
2020-11-10 06:43
5.5K
Apache/2.4.66 (Ubuntu) Server at mitra.stanford.edu Port 443