python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1780-K562_2500ng.bwameth.lambda.dedup.bam SAMstats-L1780-K562_2500ng.bwameth.lambda.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/lamda.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1780-K562_2500ng.bwameth.lambda.bam SAMstats-L1780-K562_2500ng.bwameth.lambda -bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/lamda.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1780-K562_2500ng.bwameth.hg38-female.dedup.bam SAMstats-L1780-K562_2500ng.bwameth.hg38-female.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1780-K562_2500ng.bwameth.hg38-female.bam SAMstats-L1780-K562_2500ng.bwameth.hg38-female -bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1781-K562_500ng.bwameth.lambda.dedup.bam SAMstats-L1781-K562_500ng.bwameth.lambda.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/lamda.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1781-K562_500ng.bwameth.lambda.bam SAMstats-L1781-K562_500ng.bwameth.lambda -bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/lamda.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1781-K562_500ng.bwameth.hg38-female.dedup.bam SAMstats-L1781-K562_500ng.bwameth.hg38-female.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1781-K562_500ng.bwameth.hg38-female.bam SAMstats-L1781-K562_500ng.bwameth.hg38-female -bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1782-K562_100ng.bwameth.lambda.dedup.bam SAMstats-L1782-K562_100ng.bwameth.lambda.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/lamda.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1782-K562_100ng.bwameth.lambda.bam SAMstats-L1782-K562_100ng.bwameth.lambda -bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/lamda.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1782-K562_100ng.bwameth.hg38-female.dedup.bam SAMstats-L1782-K562_100ng.bwameth.hg38-female.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1782-K562_100ng.bwameth.hg38-female.bam SAMstats-L1782-K562_100ng.bwameth.hg38-female -bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1783-K562_25ng.bwameth.lambda.dedup.bam SAMstats-L1783-K562_25ng.bwameth.lambda.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/lamda.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1783-K562_25ng.bwameth.lambda.bam SAMstats-L1783-K562_25ng.bwameth.lambda -bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/lamda.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1783-K562_25ng.bwameth.hg38-female.dedup.bam SAMstats-L1783-K562_25ng.bwameth.hg38-female.dedup -bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py L1783-K562_25ng.bwameth.hg38-female.bam SAMstats-L1783-K562_25ng.bwameth.hg38-female -bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -noNHinfo -paired &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1780-K562_2500ng.bwameth.lambda.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/sequence/lamda.fa CG,GC L1780-K562_2500ng.bwameth.lambda.CG-GC-meth-perc &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1780-K562_2500ng.bwameth.lambda.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/sequence/lamda.fa CG,GC L1780-K562_2500ng.bwameth.lambda.dedup.CG-GC-meth-perc &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1780-K562_2500ng.bwameth.hg38-female.bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/sequence/hg38-female.fa CG,GC L1780-K562_2500ng.bwameth.hg38-female.CG-GC-meth-perc &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1780-K562_2500ng.bwameth.hg38-female.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/sequence/hg38-female.fa CG,GC L1780-K562_2500ng.bwameth.hg38-female.dedup.CG-GC-meth-perc &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1781-K562_500ng.bwameth.lambda.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/sequence/lamda.fa CG,GC L1781-K562_500ng.bwameth.lambda.CG-GC-meth-perc &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1781-K562_500ng.bwameth.lambda.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/sequence/lamda.fa CG,GC L1781-K562_500ng.bwameth.lambda.dedup.CG-GC-meth-perc &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1781-K562_500ng.bwameth.hg38-female.bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/sequence/hg38-female.fa CG,GC L1781-K562_500ng.bwameth.hg38-female.CG-GC-meth-perc &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1781-K562_500ng.bwameth.hg38-female.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/sequence/hg38-female.fa CG,GC L1781-K562_500ng.bwameth.hg38-female.dedup.CG-GC-meth-perc &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1782-K562_100ng.bwameth.lambda.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/sequence/lamda.fa CG,GC L1782-K562_100ng.bwameth.lambda.CG-GC-meth-perc &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1782-K562_100ng.bwameth.lambda.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/sequence/lamda.fa CG,GC L1782-K562_100ng.bwameth.lambda.dedup.CG-GC-meth-perc &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1782-K562_100ng.bwameth.hg38-female.bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/sequence/hg38-female.fa CG,GC L1782-K562_100ng.bwameth.hg38-female.CG-GC-meth-perc &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1782-K562_100ng.bwameth.hg38-female.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/sequence/hg38-female.fa CG,GC L1782-K562_100ng.bwameth.hg38-female.dedup.CG-GC-meth-perc &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1783-K562_25ng.bwameth.lambda.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/sequence/lamda.fa CG,GC L1783-K562_25ng.bwameth.lambda.CG-GC-meth-perc &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1783-K562_25ng.bwameth.lambda.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/Lambda_phage/sequence/lamda.fa CG,GC L1783-K562_25ng.bwameth.lambda.dedup.CG-GC-meth-perc &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1783-K562_25ng.bwameth.hg38-female.bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/sequence/hg38-female.fa CG,GC L1783-K562_25ng.bwameth.hg38-female.CG-GC-meth-perc &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/MethylationPercentageContext.py L1783-K562_25ng.bwameth.hg38-female.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes//hg20/sequence/hg38-female.fa CG,GC L1783-K562_25ng.bwameth.hg38-female.dedup.CG-GC-meth-perc &