zcat SL337_b22_ATAC_thyroidredo.barcodes_annotated.T136_b22_Thyroid_PCW21.RNA_UMI.end1.fastq.gz | wc -l > SL337_b22_ATAC_thyroidredo.barcodes_annotated.T136_b22_Thyroid_PCW21.RNA_UMI.fastq.lines
zcat SL338_b22_ATAC_thyroidredo.barcodes_annotated.T136_b22_Thyroid_PCW21.RNA_UMI.end1.fastq.gz | wc -l > SL338_b22_ATAC_thyroidredo.barcodes_annotated.T136_b22_Thyroid_PCW21.RNA_UMI.fastq.lines
zcat SL337_b22_ATAC_thyroidredo.barcodes_annotated.T176_b22_Thyroid_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL337_b22_ATAC_thyroidredo.barcodes_annotated.T176_b22_Thyroid_PCW19.RNA_UMI.fastq.lines
zcat SL338_b22_ATAC_thyroidredo.barcodes_annotated.T176_b22_Thyroid_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL338_b22_ATAC_thyroidredo.barcodes_annotated.T176_b22_Thyroid_PCW19.RNA_UMI.fastq.lines
zcat SL277_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL277_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.nan_counts
zcat SL278_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL278_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.nan_counts
zcat SL279_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL279_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.nan_counts
zcat SL280_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL280_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.nan_counts
zcat SL329_b21_ATAC_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL329_b21_ATAC_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.nan_counts
zcat SL330_b21_ATAC_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL330_b21_ATAC_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.nan_counts
zcat SL337_b22_ATAC_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL337_b22_ATAC_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.nan_counts
zcat SL338_b22_ATAC_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL338_b22_ATAC_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.nan_counts
zcat SL341_b21_RNA_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL341_b21_RNA_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.nan_counts
zcat SL342_b21_RNA_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL342_b21_RNA_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.nan_counts
zcat SL349_b22_RNA_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL349_b22_RNA_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.nan_counts
zcat SL350_b22_RNA_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL350_b22_RNA_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.nan_counts
zcat SL277_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL277_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.fastq.lines
zcat SL278_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL278_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.fastq.lines
zcat SL279_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL279_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.fastq.lines
zcat SL280_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL280_b10_RNA_StomachEsophagus.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.fastq.lines
zcat SL329_b21_ATAC_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL329_b21_ATAC_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.fastq.lines
zcat SL330_b21_ATAC_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL330_b21_ATAC_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.fastq.lines
zcat SL337_b22_ATAC_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL337_b22_ATAC_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.fastq.lines
zcat SL338_b22_ATAC_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL338_b22_ATAC_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.fastq.lines
zcat SL341_b21_RNA_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL341_b21_RNA_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.fastq.lines
zcat SL342_b21_RNA_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL342_b21_RNA_kidneyreredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.fastq.lines
zcat SL349_b22_RNA_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL349_b22_RNA_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.fastq.lines
zcat SL350_b22_RNA_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL350_b22_RNA_thyroidredo.231116_A00509_0830_BHN5NJDSX7.barcodes_annotated.fastq.lines
zcat SL341_b21_RNA_kidneyreredo.barcodes_annotated.T108_b21_Kidney_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL341_b21_RNA_kidneyreredo.barcodes_annotated.T108_b21_Kidney_PCW17.RNA_UMI.fastq.lines
zcat SL342_b21_RNA_kidneyreredo.barcodes_annotated.T108_b21_Kidney_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL342_b21_RNA_kidneyreredo.barcodes_annotated.T108_b21_Kidney_PCW17.RNA_UMI.fastq.lines
zcat SL329_b21_ATAC_kidneyreredo.barcodes_annotated.T108_b21_Kidney_PCW17.end1.fastq.gz | wc -l > SL329_b21_ATAC_kidneyreredo.barcodes_annotated.T108_b21_Kidney_PCW17.fastq.lines
zcat SL330_b21_ATAC_kidneyreredo.barcodes_annotated.T108_b21_Kidney_PCW17.end1.fastq.gz | wc -l > SL330_b21_ATAC_kidneyreredo.barcodes_annotated.T108_b21_Kidney_PCW17.fastq.lines
zcat SL341_b21_RNA_kidneyreredo.barcodes_annotated.T271_b21_Kidney_PCW18.RNA_UMI.end1.fastq.gz | wc -l > SL341_b21_RNA_kidneyreredo.barcodes_annotated.T271_b21_Kidney_PCW18.RNA_UMI.fastq.lines
zcat SL342_b21_RNA_kidneyreredo.barcodes_annotated.T271_b21_Kidney_PCW18.RNA_UMI.end1.fastq.gz | wc -l > SL342_b21_RNA_kidneyreredo.barcodes_annotated.T271_b21_Kidney_PCW18.RNA_UMI.fastq.lines
zcat SL329_b21_ATAC_kidneyreredo.barcodes_annotated.T271_b21_Kidney_PCW18.end1.fastq.gz | wc -l > SL329_b21_ATAC_kidneyreredo.barcodes_annotated.T271_b21_Kidney_PCW18.fastq.lines
zcat SL330_b21_ATAC_kidneyreredo.barcodes_annotated.T271_b21_Kidney_PCW18.end1.fastq.gz | wc -l > SL330_b21_ATAC_kidneyreredo.barcodes_annotated.T271_b21_Kidney_PCW18.fastq.lines
zcat SL341_b21_RNA_kidneyreredo.barcodes_annotated.T228_b21_Kidney_PCW21.RNA_UMI.end1.fastq.gz | wc -l > SL341_b21_RNA_kidneyreredo.barcodes_annotated.T228_b21_Kidney_PCW21.RNA_UMI.fastq.lines
zcat SL342_b21_RNA_kidneyreredo.barcodes_annotated.T228_b21_Kidney_PCW21.RNA_UMI.end1.fastq.gz | wc -l > SL342_b21_RNA_kidneyreredo.barcodes_annotated.T228_b21_Kidney_PCW21.RNA_UMI.fastq.lines
zcat SL329_b21_ATAC_kidneyreredo.barcodes_annotated.T228_b21_Kidney_PCW21.end1.fastq.gz | wc -l > SL329_b21_ATAC_kidneyreredo.barcodes_annotated.T228_b21_Kidney_PCW21.fastq.lines
zcat SL330_b21_ATAC_kidneyreredo.barcodes_annotated.T228_b21_Kidney_PCW21.end1.fastq.gz | wc -l > SL330_b21_ATAC_kidneyreredo.barcodes_annotated.T228_b21_Kidney_PCW21.fastq.lines
zcat SL341_b21_RNA_kidneyreredo.barcodes_annotated.T42_b21_Kidney_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL341_b21_RNA_kidneyreredo.barcodes_annotated.T42_b21_Kidney_PCW17.RNA_UMI.fastq.lines
zcat SL342_b21_RNA_kidneyreredo.barcodes_annotated.T42_b21_Kidney_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL342_b21_RNA_kidneyreredo.barcodes_annotated.T42_b21_Kidney_PCW17.RNA_UMI.fastq.lines
zcat SL329_b21_ATAC_kidneyreredo.barcodes_annotated.T42_b21_Kidney_PCW17.end1.fastq.gz | wc -l > SL329_b21_ATAC_kidneyreredo.barcodes_annotated.T42_b21_Kidney_PCW17.fastq.lines
zcat SL330_b21_ATAC_kidneyreredo.barcodes_annotated.T42_b21_Kidney_PCW17.end1.fastq.gz | wc -l > SL330_b21_ATAC_kidneyreredo.barcodes_annotated.T42_b21_Kidney_PCW17.fastq.lines
zcat SL341_b21_RNA_kidneyreredo.barcodes_annotated.T397_b21_Kidney_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL341_b21_RNA_kidneyreredo.barcodes_annotated.T397_b21_Kidney_PCW17.RNA_UMI.fastq.lines
zcat SL342_b21_RNA_kidneyreredo.barcodes_annotated.T397_b21_Kidney_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL342_b21_RNA_kidneyreredo.barcodes_annotated.T397_b21_Kidney_PCW17.RNA_UMI.fastq.lines
zcat SL329_b21_ATAC_kidneyreredo.barcodes_annotated.T397_b21_Kidney_PCW17.end1.fastq.gz | wc -l > SL329_b21_ATAC_kidneyreredo.barcodes_annotated.T397_b21_Kidney_PCW17.fastq.lines
zcat SL330_b21_ATAC_kidneyreredo.barcodes_annotated.T397_b21_Kidney_PCW17.end1.fastq.gz | wc -l > SL330_b21_ATAC_kidneyreredo.barcodes_annotated.T397_b21_Kidney_PCW17.fastq.lines
zcat SL341_b21_RNA_kidneyreredo.barcodes_annotated.T373_b21_Kidney_PCW15.RNA_UMI.end1.fastq.gz | wc -l > SL341_b21_RNA_kidneyreredo.barcodes_annotated.T373_b21_Kidney_PCW15.RNA_UMI.fastq.lines
zcat SL342_b21_RNA_kidneyreredo.barcodes_annotated.T373_b21_Kidney_PCW15.RNA_UMI.end1.fastq.gz | wc -l > SL342_b21_RNA_kidneyreredo.barcodes_annotated.T373_b21_Kidney_PCW15.RNA_UMI.fastq.lines
zcat SL329_b21_ATAC_kidneyreredo.barcodes_annotated.T373_b21_Kidney_PCW15.end1.fastq.gz | wc -l > SL329_b21_ATAC_kidneyreredo.barcodes_annotated.T373_b21_Kidney_PCW15.fastq.lines
zcat SL330_b21_ATAC_kidneyreredo.barcodes_annotated.T373_b21_Kidney_PCW15.end1.fastq.gz | wc -l > SL330_b21_ATAC_kidneyreredo.barcodes_annotated.T373_b21_Kidney_PCW15.fastq.lines
zcat SL277_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T238_b10_Stomach_PCW21.end1.fastq.gz | wc -l > SL277_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.fastq.lines
zcat SL278_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T238_b10_Stomach_PCW21.end1.fastq.gz | wc -l > SL278_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.fastq.lines
zcat SL279_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T238_b10_Stomach_PCW21.end1.fastq.gz | wc -l > SL279_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.fastq.lines
zcat SL280_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T238_b10_Stomach_PCW21.end1.fastq.gz | wc -l > SL280_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.fastq.lines
zcat SL277_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T269_b10_Stomach_PCW18.end1.fastq.gz | wc -l > SL277_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.fastq.lines
zcat SL278_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T269_b10_Stomach_PCW18.end1.fastq.gz | wc -l > SL278_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.fastq.lines
zcat SL279_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T269_b10_Stomach_PCW18.end1.fastq.gz | wc -l > SL279_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.fastq.lines
zcat SL280_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T269_b10_Stomach_PCW18.end1.fastq.gz | wc -l > SL280_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.fastq.lines
zcat SL277_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T303_b10_Esophagus_PCW21.end1.fastq.gz | wc -l > SL277_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.fastq.lines
zcat SL278_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T303_b10_Esophagus_PCW21.end1.fastq.gz | wc -l > SL278_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.fastq.lines
zcat SL279_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T303_b10_Esophagus_PCW21.end1.fastq.gz | wc -l > SL279_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.fastq.lines
zcat SL280_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T303_b10_Esophagus_PCW21.end1.fastq.gz | wc -l > SL280_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.fastq.lines
zcat SL277_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T322_b10_Stomach_PCW21.end1.fastq.gz | wc -l > SL277_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.fastq.lines
zcat SL278_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T322_b10_Stomach_PCW21.end1.fastq.gz | wc -l > SL278_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.fastq.lines
zcat SL279_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T322_b10_Stomach_PCW21.end1.fastq.gz | wc -l > SL279_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.fastq.lines
zcat SL280_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T322_b10_Stomach_PCW21.end1.fastq.gz | wc -l > SL280_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.fastq.lines
zcat SL277_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T35_b10_Stomach_PCW17.end1.fastq.gz | wc -l > SL277_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.fastq.lines
zcat SL278_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T35_b10_Stomach_PCW17.end1.fastq.gz | wc -l > SL278_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.fastq.lines
zcat SL279_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T35_b10_Stomach_PCW17.end1.fastq.gz | wc -l > SL279_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.fastq.lines
zcat SL280_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T35_b10_Stomach_PCW17.end1.fastq.gz | wc -l > SL280_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.fastq.lines
zcat SL277_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T399_b10_Stomach_PCW17.end1.fastq.gz | wc -l > SL277_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.fastq.lines
zcat SL278_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T399_b10_Stomach_PCW17.end1.fastq.gz | wc -l > SL278_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.fastq.lines
zcat SL279_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T399_b10_Stomach_PCW17.end1.fastq.gz | wc -l > SL279_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.fastq.lines
zcat SL280_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T399_b10_Stomach_PCW17.end1.fastq.gz | wc -l > SL280_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.fastq.lines
zcat SL277_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T53_b10_Stomach_PCW20.end1.fastq.gz | wc -l > SL277_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.fastq.lines
zcat SL278_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T53_b10_Stomach_PCW20.end1.fastq.gz | wc -l > SL278_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.fastq.lines
zcat SL279_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T53_b10_Stomach_PCW20.end1.fastq.gz | wc -l > SL279_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.fastq.lines
zcat SL280_b10_RNA_StomachEsophagus.barcodes_annotated.barcode_T53_b10_Stomach_PCW20.end1.fastq.gz | wc -l > SL280_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.fastq.lines
zcat SL337_b22_ATAC_thyroidredo.barcodes_annotated.T176_b22_Thyroid_PCW19.end1.fastq.gz | wc -l > SL337_b22_ATAC_thyroidredo.barcodes_annotated.T176_b22_Thyroid_PCW19.fastq.lines
zcat SL338_b22_ATAC_thyroidredo.barcodes_annotated.T176_b22_Thyroid_PCW19.end1.fastq.gz | wc -l > SL338_b22_ATAC_thyroidredo.barcodes_annotated.T176_b22_Thyroid_PCW19.fastq.lines
zcat SL337_b22_ATAC_thyroidredo.barcodes_annotated.T136_b22_Thyroid_PCW21.end1.fastq.gz | wc -l > SL337_b22_ATAC_thyroidredo.barcodes_annotated.T136_b22_Thyroid_PCW21.fastq.lines
zcat SL338_b22_ATAC_thyroidredo.barcodes_annotated.T136_b22_Thyroid_PCW21.end1.fastq.gz | wc -l > SL338_b22_ATAC_thyroidredo.barcodes_annotated.T136_b22_Thyroid_PCW21.fastq.lines