python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL341_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL341_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL342_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL342_b21_RNA_kidneyreredo.T373_b21_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL341_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL341_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL342_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL342_b21_RNA_kidneyreredo.T397_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL341_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL341_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL342_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL342_b21_RNA_kidneyreredo.T42_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL341_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL341_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL342_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL342_b21_RNA_kidneyreredo.T228_b21_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL341_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL341_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL342_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL342_b21_RNA_kidneyreredo.T271_b21_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL341_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL341_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL342_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL342_b21_RNA_kidneyreredo.T108_b21_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL277_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL277_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL278_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL278_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL279_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL279_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL280_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL280_b10_RNA_StomachEsophagus.T238_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL277_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL277_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL278_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL278_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL279_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL279_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL280_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL280_b10_RNA_StomachEsophagus.T269_b10_Stomach_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL277_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL277_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL278_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL278_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL279_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL279_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL280_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL280_b10_RNA_StomachEsophagus.T303_b10_Esophagus_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL277_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL277_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL278_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL278_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL279_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL279_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL280_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL280_b10_RNA_StomachEsophagus.T322_b10_Stomach_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL277_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL277_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL278_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL278_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL279_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL279_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL280_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL280_b10_RNA_StomachEsophagus.T35_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL277_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL277_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL278_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL278_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL279_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL279_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL280_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL280_b10_RNA_StomachEsophagus.T399_b10_Stomach_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL277_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL277_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL278_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL278_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL279_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL279_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL280_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL280_b10_RNA_StomachEsophagus.T53_b10_Stomach_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &