python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL337_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.bigWig SL337_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.TSS_profile -normalize
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL337_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.bigWig SL337_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.TSS_profile -normalize
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL338_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.bigWig SL338_b22_ATAC_thyroidredo.T136_b22_Thyroid_PCW21.2x36mers.hg38.unique.TSS_profile -normalize
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL338_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.bigWig SL338_b22_ATAC_thyroidredo.T176_b22_Thyroid_PCW19.2x36mers.hg38.unique.TSS_profile -normalize
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL329_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.bigWig SL329_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.TSS_profile -normalize
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL330_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.bigWig SL330_b21_ATAC_kidneyreredo.T373_b21_Kidney_PCW15.2x36mers.hg38.unique.TSS_profile -normalize
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL329_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.bigWig SL329_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.TSS_profile -normalize
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL329_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.bigWig SL329_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.TSS_profile -normalize
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL329_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.bigWig SL329_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.TSS_profile -normalize
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL329_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.bigWig SL329_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.TSS_profile -normalize
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL329_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.bigWig SL329_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.TSS_profile -normalize
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL330_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.bigWig SL330_b21_ATAC_kidneyreredo.T108_b21_Kidney_PCW17.2x36mers.hg38.unique.TSS_profile -normalize
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL330_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.bigWig SL330_b21_ATAC_kidneyreredo.T271_b21_Kidney_PCW18.2x36mers.hg38.unique.TSS_profile -normalize
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL330_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.bigWig SL330_b21_ATAC_kidneyreredo.T228_b21_Kidney_PCW21.2x36mers.hg38.unique.TSS_profile -normalize
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL330_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.bigWig SL330_b21_ATAC_kidneyreredo.T42_b21_Kidney_PCW17.2x36mers.hg38.unique.TSS_profile -normalize
python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py /oak/stanford/groups/akundaje/marinovg/genomes/hg38/2016-11-16-refFlat.TSS-0bp.bed 0 1 3 4000 SL330_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.bigWig SL330_b21_ATAC_kidneyreredo.T397_b21_Kidney_PCW17.2x36mers.hg38.unique.TSS_profile -normalize