zcat SL303_skin_atac_redo.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL303_skin_atac_redo.barcodes_annotated.nan_counts
zcat SL304_skin_atac_redo.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL304_skin_atac_redo.barcodes_annotated.nan_counts
zcat SL303_skin_atac_redo.barcodes_annotated.end1.fastq.gz | wc -l > SL303_skin_atac_redo.barcodes_annotated.fastq.lines
zcat SL304_skin_atac_redo.barcodes_annotated.end1.fastq.gz | wc -l > SL304_skin_atac_redo.barcodes_annotated.fastq.lines
zcat SL303_skin_atac_redo.barcodes_annotated.T11_b19_Skin_PCW19.end1.fastq.gz | wc -l > SL303_skin_atac_redo.barcodes_annotated.T11_b19_Skin_PCW19.fastq.lines
zcat SL303_skin_atac_redo.barcodes_annotated.T45_b19_Skin_PCW17.end1.fastq.gz | wc -l > SL303_skin_atac_redo.barcodes_annotated.T45_b19_Skin_PCW17.fastq.lines
zcat SL303_skin_atac_redo.barcodes_annotated.T187_b19_Skin_PCW23.end1.fastq.gz | wc -l > SL303_skin_atac_redo.barcodes_annotated.T187_b19_Skin_PCW23.fastq.lines
zcat SL303_skin_atac_redo.barcodes_annotated.T299_b19_Scalp_PCW21.end1.fastq.gz | wc -l > SL303_skin_atac_redo.barcodes_annotated.T299_b19_Scalp_PCW21.fastq.lines
zcat SL303_skin_atac_redo.barcodes_annotated.T408S_b19_Skin_PCW19.end1.fastq.gz | wc -l > SL303_skin_atac_redo.barcodes_annotated.T408S_b19_Skin_PCW19.fastq.lines
zcat SL304_skin_atac_redo.barcodes_annotated.T11_b19_Skin_PCW19.end1.fastq.gz | wc -l > SL304_skin_atac_redo.barcodes_annotated.T11_b19_Skin_PCW19.fastq.lines
zcat SL304_skin_atac_redo.barcodes_annotated.T45_b19_Skin_PCW17.end1.fastq.gz | wc -l > SL304_skin_atac_redo.barcodes_annotated.T45_b19_Skin_PCW17.fastq.lines
zcat SL304_skin_atac_redo.barcodes_annotated.T187_b19_Skin_PCW23.end1.fastq.gz | wc -l > SL304_skin_atac_redo.barcodes_annotated.T187_b19_Skin_PCW23.fastq.lines
zcat SL304_skin_atac_redo.barcodes_annotated.T299_b19_Scalp_PCW21.end1.fastq.gz | wc -l > SL304_skin_atac_redo.barcodes_annotated.T299_b19_Scalp_PCW21.fastq.lines
zcat SL304_skin_atac_redo.barcodes_annotated.T408S_b19_Skin_PCW19.end1.fastq.gz | wc -l > SL304_skin_atac_redo.barcodes_annotated.T408S_b19_Skin_PCW19.fastq.lines
zcat SL301_skin_atac_redo.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL301_skin_atac_redo.barcodes_annotated.nan_counts
zcat SL302_skin_atac_redo.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL302_skin_atac_redo.barcodes_annotated.nan_counts
zcat SL301_skin_atac_redo.barcodes_annotated.end1.fastq.gz | wc -l > SL301_skin_atac_redo.barcodes_annotated.fastq.lines
zcat SL302_skin_atac_redo.barcodes_annotated.end1.fastq.gz | wc -l > SL302_skin_atac_redo.barcodes_annotated.fastq.lines
zcat SL301_skin_atac_redo.barcodes_annotated.T11_b19_Skin_PCW19.end1.fastq.gz | wc -l > SL301_skin_atac_redo.barcodes_annotated.T11_b19_Skin_PCW19.fastq.lines
zcat SL301_skin_atac_redo.barcodes_annotated.T45_b19_Skin_PCW17.end1.fastq.gz | wc -l > SL301_skin_atac_redo.barcodes_annotated.T45_b19_Skin_PCW17.fastq.lines
zcat SL301_skin_atac_redo.barcodes_annotated.T187_b19_Skin_PCW23.end1.fastq.gz | wc -l > SL301_skin_atac_redo.barcodes_annotated.T187_b19_Skin_PCW23.fastq.lines
zcat SL301_skin_atac_redo.barcodes_annotated.T299_b19_Scalp_PCW21.end1.fastq.gz | wc -l > SL301_skin_atac_redo.barcodes_annotated.T299_b19_Scalp_PCW21.fastq.lines
zcat SL301_skin_atac_redo.barcodes_annotated.T408S_b19_Skin_PCW19.end1.fastq.gz | wc -l > SL301_skin_atac_redo.barcodes_annotated.T408S_b19_Skin_PCW19.fastq.lines
zcat SL302_skin_atac_redo.barcodes_annotated.T11_b19_Skin_PCW19.end1.fastq.gz | wc -l > SL302_skin_atac_redo.barcodes_annotated.T11_b19_Skin_PCW19.fastq.lines
zcat SL302_skin_atac_redo.barcodes_annotated.T45_b19_Skin_PCW17.end1.fastq.gz | wc -l > SL302_skin_atac_redo.barcodes_annotated.T45_b19_Skin_PCW17.fastq.lines
zcat SL302_skin_atac_redo.barcodes_annotated.T187_b19_Skin_PCW23.end1.fastq.gz | wc -l > SL302_skin_atac_redo.barcodes_annotated.T187_b19_Skin_PCW23.fastq.lines
zcat SL302_skin_atac_redo.barcodes_annotated.T299_b19_Scalp_PCW21.end1.fastq.gz | wc -l > SL302_skin_atac_redo.barcodes_annotated.T299_b19_Scalp_PCW21.fastq.lines
zcat SL302_skin_atac_redo.barcodes_annotated.T408S_b19_Skin_PCW19.end1.fastq.gz | wc -l > SL302_skin_atac_redo.barcodes_annotated.T408S_b19_Skin_PCW19.fastq.lines
zcat SL299_skin_atac_redo.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL299_skin_atac_redo.barcodes_annotated.nan_counts
zcat SL300_skin_atac_redo.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL300_skin_atac_redo.barcodes_annotated.nan_counts
zcat SL299_skin_atac_redo.barcodes_annotated.end1.fastq.gz | wc -l > SL299_skin_atac_redo.barcodes_annotated.fastq.lines
zcat SL300_skin_atac_redo.barcodes_annotated.end1.fastq.gz | wc -l > SL300_skin_atac_redo.barcodes_annotated.fastq.lines
zcat SL299_skin_atac_redo.barcodes_annotated.T11_b19_Skin_PCW19.end1.fastq.gz | wc -l > SL299_skin_atac_redo.barcodes_annotated.T11_b19_Skin_PCW19.fastq.lines
zcat SL299_skin_atac_redo.barcodes_annotated.T45_b19_Skin_PCW17.end1.fastq.gz | wc -l > SL299_skin_atac_redo.barcodes_annotated.T45_b19_Skin_PCW17.fastq.lines
zcat SL299_skin_atac_redo.barcodes_annotated.T187_b19_Skin_PCW23.end1.fastq.gz | wc -l > SL299_skin_atac_redo.barcodes_annotated.T187_b19_Skin_PCW23.fastq.lines
zcat SL299_skin_atac_redo.barcodes_annotated.T299_b19_Scalp_PCW21.end1.fastq.gz | wc -l > SL299_skin_atac_redo.barcodes_annotated.T299_b19_Scalp_PCW21.fastq.lines
zcat SL299_skin_atac_redo.barcodes_annotated.T408S_b19_Skin_PCW19.end1.fastq.gz | wc -l > SL299_skin_atac_redo.barcodes_annotated.T408S_b19_Skin_PCW19.fastq.lines
zcat SL300_skin_atac_redo.barcodes_annotated.T11_b19_Skin_PCW19.end1.fastq.gz | wc -l > SL300_skin_atac_redo.barcodes_annotated.T11_b19_Skin_PCW19.fastq.lines
zcat SL300_skin_atac_redo.barcodes_annotated.T45_b19_Skin_PCW17.end1.fastq.gz | wc -l > SL300_skin_atac_redo.barcodes_annotated.T45_b19_Skin_PCW17.fastq.lines
zcat SL300_skin_atac_redo.barcodes_annotated.T187_b19_Skin_PCW23.end1.fastq.gz | wc -l > SL300_skin_atac_redo.barcodes_annotated.T187_b19_Skin_PCW23.fastq.lines
zcat SL300_skin_atac_redo.barcodes_annotated.T299_b19_Scalp_PCW21.end1.fastq.gz | wc -l > SL300_skin_atac_redo.barcodes_annotated.T299_b19_Scalp_PCW21.fastq.lines
zcat SL300_skin_atac_redo.barcodes_annotated.T408S_b19_Skin_PCW19.end1.fastq.gz | wc -l > SL300_skin_atac_redo.barcodes_annotated.T408S_b19_Skin_PCW19.fastq.lines
zcat SL315_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz | grep nan | wc -l > SL315_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.nan_counts
zcat SL316_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz | grep nan | wc -l > SL316_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.nan_counts
zcat SL315_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz | wc -l > SL315_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.fastq.lines
zcat SL316_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz | wc -l > SL316_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.fastq.lines
zcat SL315_b19_RNA_skinredo.barcodes_annotated.T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL315_b19_RNA_skinredo.barcodes_annotated.T11_b19_Skin_PCW19.RNA_UMI.fastq.lines
zcat SL315_b19_RNA_skinredo.barcodes_annotated.T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL315_b19_RNA_skinredo.barcodes_annotated.T45_b19_Skin_PCW17.RNA_UMI.fastq.lines
zcat SL315_b19_RNA_skinredo.barcodes_annotated.T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz | wc -l > SL315_b19_RNA_skinredo.barcodes_annotated.T187_b19_Skin_PCW23.RNA_UMI.fastq.lines
zcat SL315_b19_RNA_skinredo.barcodes_annotated.T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz | wc -l > SL315_b19_RNA_skinredo.barcodes_annotated.T299_b19_Scalp_PCW21.RNA_UMI.fastq.lines
zcat SL315_b19_RNA_skinredo.barcodes_annotated.T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL315_b19_RNA_skinredo.barcodes_annotated.T408S_b19_Skin_PCW19.RNA_UMI.fastq.lines
zcat SL316_b19_RNA_skinredo.barcodes_annotated.T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL316_b19_RNA_skinredo.barcodes_annotated.T11_b19_Skin_PCW19.RNA_UMI.fastq.lines
zcat SL316_b19_RNA_skinredo.barcodes_annotated.T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL316_b19_RNA_skinredo.barcodes_annotated.T45_b19_Skin_PCW17.RNA_UMI.fastq.lines
zcat SL316_b19_RNA_skinredo.barcodes_annotated.T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz | wc -l > SL316_b19_RNA_skinredo.barcodes_annotated.T187_b19_Skin_PCW23.RNA_UMI.fastq.lines
zcat SL316_b19_RNA_skinredo.barcodes_annotated.T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz | wc -l > SL316_b19_RNA_skinredo.barcodes_annotated.T299_b19_Scalp_PCW21.RNA_UMI.fastq.lines
zcat SL316_b19_RNA_skinredo.barcodes_annotated.T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL316_b19_RNA_skinredo.barcodes_annotated.T408S_b19_Skin_PCW19.RNA_UMI.fastq.lines
zcat SL317_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz | grep nan | wc -l > SL317_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.nan_counts
zcat SL318_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz | grep nan | wc -l > SL318_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.nan_counts
zcat SL317_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz | wc -l > SL317_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.fastq.lines
zcat SL318_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz | wc -l > SL318_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.fastq.lines
zcat SL317_b19_RNA_skinredo.barcodes_annotated.T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL317_b19_RNA_skinredo.barcodes_annotated.T11_b19_Skin_PCW19.RNA_UMI.fastq.lines
zcat SL317_b19_RNA_skinredo.barcodes_annotated.T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL317_b19_RNA_skinredo.barcodes_annotated.T45_b19_Skin_PCW17.RNA_UMI.fastq.lines
zcat SL317_b19_RNA_skinredo.barcodes_annotated.T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz | wc -l > SL317_b19_RNA_skinredo.barcodes_annotated.T187_b19_Skin_PCW23.RNA_UMI.fastq.lines
zcat SL317_b19_RNA_skinredo.barcodes_annotated.T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz | wc -l > SL317_b19_RNA_skinredo.barcodes_annotated.T299_b19_Scalp_PCW21.RNA_UMI.fastq.lines
zcat SL317_b19_RNA_skinredo.barcodes_annotated.T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL317_b19_RNA_skinredo.barcodes_annotated.T408S_b19_Skin_PCW19.RNA_UMI.fastq.lines
zcat SL318_b19_RNA_skinredo.barcodes_annotated.T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL318_b19_RNA_skinredo.barcodes_annotated.T11_b19_Skin_PCW19.RNA_UMI.fastq.lines
zcat SL318_b19_RNA_skinredo.barcodes_annotated.T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL318_b19_RNA_skinredo.barcodes_annotated.T45_b19_Skin_PCW17.RNA_UMI.fastq.lines
zcat SL318_b19_RNA_skinredo.barcodes_annotated.T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz | wc -l > SL318_b19_RNA_skinredo.barcodes_annotated.T187_b19_Skin_PCW23.RNA_UMI.fastq.lines
zcat SL318_b19_RNA_skinredo.barcodes_annotated.T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz | wc -l > SL318_b19_RNA_skinredo.barcodes_annotated.T299_b19_Scalp_PCW21.RNA_UMI.fastq.lines
zcat SL318_b19_RNA_skinredo.barcodes_annotated.T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL318_b19_RNA_skinredo.barcodes_annotated.T408S_b19_Skin_PCW19.RNA_UMI.fastq.lines
zcat SL319_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz | grep nan | wc -l > SL319_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.nan_counts
zcat SL320_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz | grep nan | wc -l > SL320_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.nan_counts
zcat SL319_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz | wc -l > SL319_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.fastq.lines
zcat SL320_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz | wc -l > SL320_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.fastq.lines
zcat SL319_b19_RNA_skinredo.barcodes_annotated.T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL319_b19_RNA_skinredo.barcodes_annotated.T11_b19_Skin_PCW19.RNA_UMI.fastq.lines
zcat SL319_b19_RNA_skinredo.barcodes_annotated.T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL319_b19_RNA_skinredo.barcodes_annotated.T45_b19_Skin_PCW17.RNA_UMI.fastq.lines
zcat SL319_b19_RNA_skinredo.barcodes_annotated.T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz | wc -l > SL319_b19_RNA_skinredo.barcodes_annotated.T187_b19_Skin_PCW23.RNA_UMI.fastq.lines
zcat SL319_b19_RNA_skinredo.barcodes_annotated.T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz | wc -l > SL319_b19_RNA_skinredo.barcodes_annotated.T299_b19_Scalp_PCW21.RNA_UMI.fastq.lines
zcat SL319_b19_RNA_skinredo.barcodes_annotated.T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL319_b19_RNA_skinredo.barcodes_annotated.T408S_b19_Skin_PCW19.RNA_UMI.fastq.lines
zcat SL320_b19_RNA_skinredo.barcodes_annotated.T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL320_b19_RNA_skinredo.barcodes_annotated.T11_b19_Skin_PCW19.RNA_UMI.fastq.lines
zcat SL320_b19_RNA_skinredo.barcodes_annotated.T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL320_b19_RNA_skinredo.barcodes_annotated.T45_b19_Skin_PCW17.RNA_UMI.fastq.lines
zcat SL320_b19_RNA_skinredo.barcodes_annotated.T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz | wc -l > SL320_b19_RNA_skinredo.barcodes_annotated.T187_b19_Skin_PCW23.RNA_UMI.fastq.lines
zcat SL320_b19_RNA_skinredo.barcodes_annotated.T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz | wc -l > SL320_b19_RNA_skinredo.barcodes_annotated.T299_b19_Scalp_PCW21.RNA_UMI.fastq.lines
zcat SL320_b19_RNA_skinredo.barcodes_annotated.T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL320_b19_RNA_skinredo.barcodes_annotated.T408S_b19_Skin_PCW19.RNA_UMI.fastq.lines