python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL319_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL319_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL319_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL319_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL319_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL319_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL319_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL319_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL319_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL319_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL319_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL319_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL319_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL319_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL319_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL320_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL320_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL320_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL320_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL320_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL320_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL320_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL320_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL320_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL320_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL320_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL320_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL320_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL320_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL320_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL318_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL318_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL318_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL318_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL318_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL318_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL318_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL318_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL318_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL318_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL318_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL318_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL318_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL318_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL318_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL317_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL317_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL317_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL317_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL317_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL317_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL317_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL317_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL317_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL317_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL317_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL317_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL317_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL317_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL317_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL315_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL315_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL315_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL315_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL315_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL315_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL315_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL315_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL315_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL315_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL315_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL315_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL315_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL315_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL315_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL316_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL316_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL316_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL316_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL316_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL316_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL316_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL316_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL316_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL316_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL316_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL316_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL316_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL316_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL316_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse