python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL291_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL291_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL291_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL291_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL291_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL291_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL291_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL291_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL291_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL291_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL291_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL291_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL291_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL291_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL292_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL292_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL292_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL292_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL292_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL292_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL292_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL292_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL292_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL292_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL292_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL292_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL292_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL292_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL294_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL294_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL294_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL294_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL294_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL294_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL294_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL294_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL294_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL294_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL294_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL294_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL294_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL294_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL293_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL293_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL293_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL293_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL293_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL293_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL293_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL293_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL293_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL293_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL293_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL293_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL293_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL293_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL295_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL295_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL295_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL295_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL295_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL295_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL295_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL295_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL295_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL295_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL295_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL295_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL295_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL295_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL296_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL296_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL296_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL296_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL296_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL296_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL296_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL296_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL296_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL296_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL296_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL296_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-BC-sum-across-files.py SL296_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation-chr.UMIs_per_cell.filelist SL296_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell &