python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL289_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL289_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL289_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL289_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL289_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL289_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL289_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL289_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL289_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL289_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL289_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL289_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL289_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL289_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL289_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL289_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL289_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL289_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL289_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL289_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL289_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL290_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL290_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL290_b18_RNA_lungredo2.T175_b18_Lung_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL290_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL290_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL290_b18_RNA_lungredo2.T198_b18_Lung_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL290_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL290_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL290_b18_RNA_lungredo2.T24_b18_Lung_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL290_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL290_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL290_b18_RNA_lungredo2.T305_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL290_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL290_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL290_b18_RNA_lungredo2.T333_b18_Lung_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL290_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL290_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL290_b18_RNA_lungredo2.T49_b18_Lung_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL290_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL290_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL290_b18_RNA_lungredo2.T77_b18_Lung_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL313_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL313_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL313_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL313_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL313_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL313_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL313_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL313_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL313_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL313_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL313_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL313_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL313_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL313_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL313_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL314_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL314_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL314_b19_RNA_skinredo.T11_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL314_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL314_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL314_b19_RNA_skinredo.T187_b19_Skin_PCW23.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL314_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL314_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL314_b19_RNA_skinredo.T299_b19_Scalp_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL314_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL314_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL314_b19_RNA_skinredo.T408S_b19_Skin_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL314_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL314_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL314_b19_RNA_skinredo.T45_b19_Skin_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL321_b20_RNA_kidneyredo.T108_b20_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL321_b20_RNA_kidneyredo.T108_b20_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL321_b20_RNA_kidneyredo.T108_b20_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL321_b20_RNA_kidneyredo.T181_b20_Kidney_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL321_b20_RNA_kidneyredo.T181_b20_Kidney_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL321_b20_RNA_kidneyredo.T181_b20_Kidney_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL321_b20_RNA_kidneyredo.T271_b20_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL321_b20_RNA_kidneyredo.T271_b20_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL321_b20_RNA_kidneyredo.T271_b20_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL321_b20_RNA_kidneyredo.T309_b20_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL321_b20_RNA_kidneyredo.T309_b20_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL321_b20_RNA_kidneyredo.T309_b20_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL321_b20_RNA_kidneyredo.T359_b20_Kidney_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL321_b20_RNA_kidneyredo.T359_b20_Kidney_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL321_b20_RNA_kidneyredo.T359_b20_Kidney_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL321_b20_RNA_kidneyredo.T373_b20_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL321_b20_RNA_kidneyredo.T373_b20_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL321_b20_RNA_kidneyredo.T373_b20_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL321_b20_RNA_kidneyredo.T42_b20_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL321_b20_RNA_kidneyredo.T42_b20_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL321_b20_RNA_kidneyredo.T42_b20_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL321_b20_RNA_kidneyredo.T65_b20_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL321_b20_RNA_kidneyredo.T65_b20_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL321_b20_RNA_kidneyredo.T65_b20_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL322_b20_RNA_kidneyredo.T108_b20_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL322_b20_RNA_kidneyredo.T108_b20_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL322_b20_RNA_kidneyredo.T108_b20_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL322_b20_RNA_kidneyredo.T181_b20_Kidney_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL322_b20_RNA_kidneyredo.T181_b20_Kidney_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL322_b20_RNA_kidneyredo.T181_b20_Kidney_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL322_b20_RNA_kidneyredo.T271_b20_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL322_b20_RNA_kidneyredo.T271_b20_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL322_b20_RNA_kidneyredo.T271_b20_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL322_b20_RNA_kidneyredo.T309_b20_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL322_b20_RNA_kidneyredo.T309_b20_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL322_b20_RNA_kidneyredo.T309_b20_Kidney_PCW21.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL322_b20_RNA_kidneyredo.T359_b20_Kidney_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL322_b20_RNA_kidneyredo.T359_b20_Kidney_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL322_b20_RNA_kidneyredo.T359_b20_Kidney_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL322_b20_RNA_kidneyredo.T373_b20_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL322_b20_RNA_kidneyredo.T373_b20_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL322_b20_RNA_kidneyredo.T373_b20_Kidney_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL322_b20_RNA_kidneyredo.T42_b20_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL322_b20_RNA_kidneyredo.T42_b20_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL322_b20_RNA_kidneyredo.T42_b20_Kidney_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL322_b20_RNA_kidneyredo.T65_b20_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL322_b20_RNA_kidneyredo.T65_b20_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL322_b20_RNA_kidneyredo.T65_b20_Kidney_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse