samtools merge -f subbam_merge-safes.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204618.4569.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204618.4569.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204618.4569.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204618.4569.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204618.4569.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204618.4569.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204894.4845.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204894.4845.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204894.4845.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204894.4845.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204894.4845.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204894.4845.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205125.5076.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205125.5076.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205125.5076.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205125.5076.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205125.5076.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205125.5076.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205208.5159.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205208.5159.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205208.5159.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205208.5159.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205208.5159.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205296.5247.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205296.5247.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205296.5247.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205296.5247.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205296.5247.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205296.5247.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205410.5361.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205410.5361.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205410.5361.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205410.5361.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205410.5361.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205410.5361.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205705.5656.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205705.5656.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205705.5656.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205705.5656.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205705.5656.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205705.5656.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205735.5686.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205735.5686.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205735.5686.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205735.5686.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205735.5686.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205735.5686.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205757.5708.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205757.5708.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205757.5708.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205757.5708.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205757.5708.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205757.5708.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205953.5904.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205953.5904.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205953.5904.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205953.5904.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205953.5904.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205953.5904.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206089.1540.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206089.1540.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206089.1540.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206089.1540.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206089.1540.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206175.1626.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206175.1626.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206175.1626.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206175.1626.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206175.1626.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206175.1626.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206529.1980.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206529.1980.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206529.1980.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206529.1980.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206529.1980.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206529.1980.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206639.2090.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206639.2090.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206639.2090.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206639.2090.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206639.2090.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206639.2090.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206771.2222.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206771.2222.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206771.2222.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206771.2222.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206771.2222.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206771.2222.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_206926.1126.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_206926.1126.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_206926.1126.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_206926.1126.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_206926.1126.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_206926.1126.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207317.767.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207317.767.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207317.767.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207317.767.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207317.767.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207317.767.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207448.898.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207448.898.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207448.898.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207448.898.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207448.898.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207448.898.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207539.989.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207539.989.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207539.989.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207539.989.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207539.989.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207539.989.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_207988.2689.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_207988.2689.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_207988.2689.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_207988.2689.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_207988.2689.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_207988.2689.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208065.2766.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208065.2766.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208065.2766.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208065.2766.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208065.2766.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208065.2766.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208090.2791.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208090.2791.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208090.2791.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208090.2791.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208090.2791.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208090.2791.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208161.2862.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208161.2862.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208161.2862.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208161.2862.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208161.2862.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208161.2862.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208208.2909.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208208.2909.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208208.2909.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208208.2909.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208208.2909.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208208.2909.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_TMMO_208513.291.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_TMMO_208513.291.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_TMMO_208513.291.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_TMMO_208513.291.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_TMMO_208513.291.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_TMMO_208513.291.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209141.3842.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209141.3842.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209141.3842.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209141.3842.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209141.3842.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209141.3842.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209196.3897.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209196.3897.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209196.3897.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209196.3897.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209196.3897.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209196.3897.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209299.4000.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209299.4000.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209299.4000.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209299.4000.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209299.4000.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209299.4000.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209390.4091.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209390.4091.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209390.4091.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209390.4091.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209390.4091.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209390.4091.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209555.4256.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209555.4256.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209555.4256.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209555.4256.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209555.4256.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209632.4333.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209632.4333.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209632.4333.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209632.4333.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209632.4333.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209632.4333.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209637.4338.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209637.4338.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209637.4338.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209637.4338.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209637.4338.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209637.4338.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209757.4458.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209757.4458.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209757.4458.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209757.4458.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209757.4458.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209757.4458.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA2_210395.3596.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA2_210395.3596.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA2_210395.3596.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA2_210395.3596.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA2_210395.3596.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA2_210395.3596.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210755.6206.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210755.6206.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210755.6206.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210755.6206.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210755.6206.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210755.6206.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210814.6265.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210814.6265.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210814.6265.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210814.6265.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210814.6265.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210814.6265.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210825.6276.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210825.6276.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210825.6276.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210825.6276.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210825.6276.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210825.6276.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210841.6292.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210841.6292.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210841.6292.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210841.6292.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210841.6292.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210841.6292.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210935.6386.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210935.6386.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210935.6386.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210935.6386.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210935.6386.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210935.6386.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210937.6388.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210937.6388.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210937.6388.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210937.6388.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210937.6388.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210937.6388.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211126.6577.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211126.6577.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211126.6577.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211126.6577.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211126.6577.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211126.6577.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211142.6593.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211142.6593.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211142.6593.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211142.6593.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211142.6593.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211142.6593.bam
samtools merge -f subbam_merge-ADNP2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_2.bam
samtools merge -f subbam_merge-ADNP.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_2.bam
samtools merge -f subbam_merge-AHCTF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-AKAP8L.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_2.bam
samtools merge -f subbam_merge-AKAP8.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_2.bam
samtools merge -f subbam_merge-ANKZF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ANKZF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ANKZF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ANKZF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ANKZF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ANKZF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ANKZF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ANKZF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ANKZF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ANKZF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ANKZF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ANKZF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-ARID2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_2.bam
samtools merge -f subbam_merge-ARID3A.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_BroadBrunello_2.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_PositiveControl_1.bam
samtools merge -f subbam_merge-ARNT.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_2.bam
samtools merge -f subbam_merge-ASH1L.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_2.bam
samtools merge -f subbam_merge-ATF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_2.bam
samtools merge -f subbam_merge-ATF2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_2.bam
samtools merge -f subbam_merge-ATF4.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_2.bam
samtools merge -f subbam_merge-ATF6B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_2.bam
samtools merge -f subbam_merge-ATF6.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_2.bam
samtools merge -f subbam_merge-ATF7.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_2.bam
samtools merge -f subbam_merge-ATMIN.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_2.bam
samtools merge -f subbam_merge-BACH1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_2.bam
samtools merge -f subbam_merge-BAZ2A.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_2.bam
samtools merge -f subbam_merge-BAZ2B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_2.bam
samtools merge -f subbam_merge-BHLHE40.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_2.bam
samtools merge -f subbam_merge-BPTF.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_2.bam
samtools merge -f subbam_merge-BRF2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_2.bam
samtools merge -f subbam_merge-CAMTA1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_2.bam
samtools merge -f subbam_merge-CDC5L.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_2.bam
samtools merge -f subbam_merge-CEBPG.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_2.bam
samtools merge -f subbam_merge-CEBPZ.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CEBPZ_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CEBPZ_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CEBPZ_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CEBPZ_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CEBPZ_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CEBPZ_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CEBPZ_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CEBPZ_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CEBPZ_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CEBPZ_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CEBPZ_PositiveControl_2.bam
samtools merge -f subbam_merge-CENPA.merged.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CENPA_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CENPA_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CENPA_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CENPA_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPA_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CENPA_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CENPA_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CENPA_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CENPA_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CENPA_BroadBrunello_2.bam
samtools merge -f subbam_merge-CENPBD1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_2.bam
samtools merge -f subbam_merge-CENPS.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_2.bam
samtools merge -f subbam_merge-CENPT.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPT_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CENPT_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CENPT_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CENPT_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CENPT_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPT_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CENPT_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CENPT_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CENPT_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CENPT_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CENPT_BroadBrunello_2.bam
samtools merge -f subbam_merge-CENPX.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_2.bam
samtools merge -f subbam_merge-CGGBP1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_2.bam
samtools merge -f subbam_merge-CHAMP1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_2.bam
samtools merge -f subbam_merge-CHCHD3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_2.bam
samtools merge -f subbam_merge-CREB1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_2.bam
samtools merge -f subbam_merge-CREB3L2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_2.bam
samtools merge -f subbam_merge-CREB3L4.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_2.bam
samtools merge -f subbam_merge-CREBZF.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_2.bam
samtools merge -f subbam_merge-CREM.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_2.bam
samtools merge -f subbam_merge-CSRNP1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_2.bam
samtools merge -f subbam_merge-CTCFL.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_2.bam
samtools merge -f subbam_merge-CTCF.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_2.bam
samtools merge -f subbam_merge-CXXC1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_2.bam
samtools merge -f subbam_merge-CXXC5.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_2.bam
samtools merge -f subbam_merge-DDIT3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_2.bam
samtools merge -f subbam_merge-DEAF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-DMTF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-DNMT1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DNMT1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.DNMT1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.DNMT1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.DNMT1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DNMT1_Weissman_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.DNMT1_Weissman_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.DNMT1_Weissman_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.DNMT1_Weissman_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.DNMT1_Weissman_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.DNMT1_Weissman_2.bam
samtools merge -f subbam_merge-DNTTIP1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_2.bam
samtools merge -f subbam_merge-DR1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_2.bam
samtools merge -f subbam_merge-DRAP1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_2.bam
samtools merge -f subbam_merge-E2F3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_2.bam
samtools merge -f subbam_merge-E2F4.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_2.bam
samtools merge -f subbam_merge-E2F5.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_2.bam
samtools merge -f subbam_merge-E2F6.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_2.bam
samtools merge -f subbam_merge-E4F1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_2.bam
samtools merge -f subbam_merge-ELF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_2.bam
samtools merge -f subbam_merge-ELF2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ELF2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ELF2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ELF2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ELF2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ELF2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ELF2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ELF2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ELF2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ELF2_BroadBrunello_2.bam
samtools merge -f subbam_merge-ELF4.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_2.bam
samtools merge -f subbam_merge-ELK1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_2.bam
samtools merge -f subbam_merge-ERF.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_2.bam
samtools merge -f subbam_merge-ESRRA.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_2.bam
samtools merge -f subbam_merge-ESRRB.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_2.bam
samtools merge -f subbam_merge-ETV1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_2.bam
samtools merge -f subbam_merge-ETV4.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_2.bam
samtools merge -f subbam_merge-ETV5.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_2.bam
samtools merge -f subbam_merge-FAM200B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_2.bam
samtools merge -f subbam_merge-FOXA3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_2.bam
samtools merge -f subbam_merge-FOXJ3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_2.bam
samtools merge -f subbam_merge-FOXK2.merged.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.FOXK2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.FOXK2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.FOXK2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.FOXK2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.FOXK2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXK2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.FOXK2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.FOXK2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.FOXK2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.FOXK2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.FOXK2_BroadBrunello_2.bam
samtools merge -f subbam_merge-FOXN2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_2.bam
samtools merge -f subbam_merge-GABPA.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_2.bam
samtools merge -f subbam_merge-GATA1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATA1_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GATA1_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GATA1_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GATA1_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GATA1_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GATA1_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATA1_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GATA1_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GATA1_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GATA1_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GATA1_PositiveControl_2.bam
samtools merge -f subbam_merge-GATA2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_2.bam
samtools merge -f subbam_merge-GATAD2A.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_2.bam
samtools merge -f subbam_merge-GFI1B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GFI1B_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GFI1B_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GFI1B_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GFI1B_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GFI1B_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GFI1B_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GFI1B_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GFI1B_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GFI1B_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GFI1B_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GFI1B_BroadBrunello_2.bam
samtools merge -f subbam_merge-GLYR1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_2.bam
samtools merge -f subbam_merge-GPBP1L1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_2.bam
samtools merge -f subbam_merge-GPBP1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_2.bam
samtools merge -f subbam_merge-GTF2B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_2.bam
samtools merge -f subbam_merge-GTF2I.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_2.bam
samtools merge -f subbam_merge-GTF3A.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_2.bam
samtools merge -f subbam_merge-GZF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-HBP1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_2.bam
samtools merge -f subbam_merge-HES6.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_2.bam
samtools merge -f subbam_merge-HHEX.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HHEX_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HHEX_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HHEX_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HHEX_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HHEX_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HHEX_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HHEX_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HHEX_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HHEX_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HHEX_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HHEX_BroadBrunello_2.bam
samtools merge -f subbam_merge-HIC2.merged.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HIC2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HIC2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HIC2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HIC2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HIC2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HIC2_BroadBrunello_2.bam
samtools merge -f subbam_merge-HIF1A.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_2.bam
samtools merge -f subbam_merge-HINFP.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_2.bam
samtools merge -f subbam_merge-HIVEP1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_2.bam
samtools merge -f subbam_merge-HMBOX1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_2.bam
samtools merge -f subbam_merge-HMG20A.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_2.bam
samtools merge -f subbam_merge-HMG20B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_2.bam
samtools merge -f subbam_merge-HMGA1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMGA1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HMGA1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HMGA1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HMGA1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HMGA1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMGA1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HMGA1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HMGA1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HMGA1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HMGA1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HMGA1_BroadBrunello_2.bam
samtools merge -f subbam_merge-HMGN3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_2.bam
samtools merge -f subbam_merge-HOMEZ.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_2.bam
samtools merge -f subbam_merge-HOXB2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_2.bam
samtools merge -f subbam_merge-HOXB3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_2.bam
samtools merge -f subbam_merge-HOXB9.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_2.bam
samtools merge -f subbam_merge-HSF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-HSF2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_2.bam
samtools merge -f subbam_merge-IKZF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-IRF3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_2.bam
samtools merge -f subbam_merge-IRF9.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_2.bam
samtools merge -f subbam_merge-JRKL.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_2.bam
samtools merge -f subbam_merge-JUNB.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JUNB_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.JUNB_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.JUNB_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.JUNB_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.JUNB_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JUNB_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.JUNB_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.JUNB_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.JUNB_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.JUNB_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.JUNB_BroadBrunello_2.bam
samtools merge -f subbam_merge-JUND.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_2.bam
samtools merge -f subbam_merge-KAT7.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_2.bam
samtools merge -f subbam_merge-KCMF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-KDM2A.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM2A_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KDM2A_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KDM2A_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KDM2A_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.KDM2A_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KDM2A_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM2A_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KDM2A_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KDM2A_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KDM2A_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KDM2A_BroadBrunello_2.bam
samtools merge -f subbam_merge-KDM2B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_2.bam
samtools merge -f subbam_merge-KDM5B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM5B_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KDM5B_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KDM5B_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KDM5B_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.KDM5B_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KDM5B_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM5B_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KDM5B_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KDM5B_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KDM5B_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KDM5B_BroadBrunello_2.bam
samtools merge -f subbam_merge-KLF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_2.bam
samtools merge -f subbam_merge-KLF3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_2.bam
samtools merge -f subbam_merge-KMT2A.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_2.bam
samtools merge -f subbam_merge-LCORL.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LCORL_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.LCORL_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.LCORL_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.LCORL_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.LCORL_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LCORL_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.LCORL_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.LCORL_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.LCORL_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.LCORL_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.LCORL_BroadBrunello_2.bam
samtools merge -f subbam_merge-LEF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-LIN28B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_2.bam
samtools merge -f subbam_merge-LIN54.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_2.bam
samtools merge -f subbam_merge-LYL1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_2.bam
samtools merge -f subbam_merge-MAFG.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_2.bam
samtools merge -f subbam_merge-MAX.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAX_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MAX_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MAX_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAX_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MAX_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MAX_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MAX_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MAX_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MAX_PositiveControl_2.bam
samtools merge -f subbam_merge-MAZ.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_2.bam
samtools merge -f subbam_merge-MBD1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_2.bam
samtools merge -f subbam_merge-MBD2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MBD2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MBD2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MBD2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MBD2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MBD2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MBD2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MBD2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MBD2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MBD2_BroadBrunello_2.bam
samtools merge -f subbam_merge-MBD3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_2.bam
samtools merge -f subbam_merge-MBD4.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_2.bam
samtools merge -f subbam_merge-MBNL2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_2.bam
samtools merge -f subbam_merge-MECOM.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_2.bam
samtools merge -f subbam_merge-MECP2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_2.bam
samtools merge -f subbam_merge-MEF2C.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_2.bam
samtools merge -f subbam_merge-MEIS2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_2.bam
samtools merge -f subbam_merge-MGA.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_2.bam
samtools merge -f subbam_merge-MLXIP.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_2.bam
samtools merge -f subbam_merge-MLX.merged.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MLX_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MLX_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MLX_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MLX_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MLX_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MLX_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MLX_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MLX_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MLX_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MLX_BroadBrunello_2.bam
samtools merge -f subbam_merge-MSANTD3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MSANTD3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MSANTD3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MSANTD3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MSANTD3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MSANTD3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MSANTD3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MSANTD3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MSANTD3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MSANTD3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MSANTD3_BroadBrunello_2.bam
samtools merge -f subbam_merge-MTERF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-MTERF2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_2.bam
samtools merge -f subbam_merge-MTERF3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_2.bam
samtools merge -f subbam_merge-MTERF4.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_2.bam
samtools merge -f subbam_merge-MTF2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_2.bam
samtools merge -f subbam_merge-MXD1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_2.bam
samtools merge -f subbam_merge-MXI1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_2.bam
samtools merge -f subbam_merge-MYBL2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYBL2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MYBL2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MYBL2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MYBL2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MYBL2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MYBL2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MYBL2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MYBL2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MYBL2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MYBL2_BroadBrunello_2.bam
samtools merge -f subbam_merge-MYB.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYB_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MYB_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MYB_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MYB_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MYB_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MYB_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYB_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MYB_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MYB_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MYB_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MYB_BroadBrunello_2.bam
samtools merge -f subbam_merge-MYC.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_2.bam
samtools merge -f subbam_merge-MYNN.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_2.bam
samtools merge -f subbam_merge-MYSM1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_2.bam
samtools merge -f subbam_merge-MZF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-NAIF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-NCOA1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_2.bam
samtools merge -f subbam_merge-NCOA3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_2.bam
samtools merge -f subbam_merge-NFAT5.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFAT5_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFAT5_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFAT5_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFAT5_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFAT5_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFAT5_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFAT5_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFAT5_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFAT5_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFAT5_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFAT5_BroadBrunello_2.bam
samtools merge -f subbam_merge-NFATC3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_2.bam
samtools merge -f subbam_merge-NFE2L1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_2.bam
samtools merge -f subbam_merge-NFE2L2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_2.bam
samtools merge -f subbam_merge-NFE2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_2.bam
samtools merge -f subbam_merge-NFE4.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE4_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFE4_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFE4_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFE4_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFE4_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE4_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFE4_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFE4_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFE4_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFE4_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFE4_BroadBrunello_2.bam
samtools merge -f subbam_merge-NFX1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_2.bam
samtools merge -f subbam_merge-NFXL1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFXL1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFXL1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFXL1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFXL1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFXL1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFXL1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFXL1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFXL1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFXL1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFXL1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFXL1_BroadBrunello_2.bam
samtools merge -f subbam_merge-NFYA.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYA_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFYA_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFYA_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFYA_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFYA_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYA_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFYA_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFYA_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFYA_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFYA_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFYA_BroadBrunello_2.bam
samtools merge -f subbam_merge-NFYB.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_2.bam
samtools merge -f subbam_merge-NFYC.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYC_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFYC_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFYC_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFYC_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYC_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NFYC_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NFYC_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NFYC_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NFYC_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NFYC_BroadBrunello_2.bam
samtools merge -f subbam_merge-NKRF.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_2.bam
samtools merge -f subbam_merge-NME2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_2.bam
samtools merge -f subbam_merge-NR1H2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_2.bam
samtools merge -f subbam_merge-NR1H3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_2.bam
samtools merge -f subbam_merge-NR2C1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_2.bam
samtools merge -f subbam_merge-NR2C2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_2.bam
samtools merge -f subbam_merge-NR2F6.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_2.bam
samtools merge -f subbam_merge-NR3C1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_2.bam
samtools merge -f subbam_merge-NR6A1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_2.bam
samtools merge -f subbam_merge-NRF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_2.bam
samtools merge -f subbam_merge-PA2G4.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_2.bam
samtools merge -f subbam_merge-PBX2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_2.bam
samtools merge -f subbam_merge-PCGF6.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_2.bam
samtools merge -f subbam_merge-PHF19.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_2.bam
samtools merge -f subbam_merge-PHF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-PHF20.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_2.bam
samtools merge -f subbam_merge-PIN1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_2.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_2.bam
samtools merge -f subbam_merge-PITX1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_2.bam
samtools merge -f subbam_merge-PKNOX1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_2.bam
samtools merge -f subbam_merge-PLAGL1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_2.bam
samtools merge -f subbam_merge-PLSCR1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PLSCR1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PLSCR1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PLSCR1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PLSCR1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PLSCR1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PLSCR1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PLSCR1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PLSCR1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PLSCR1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PLSCR1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PLSCR1_BroadBrunello_2.bam
samtools merge -f subbam_merge-PRDM4.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PRDM4_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PRDM4_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PRDM4_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PRDM4_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PRDM4_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PRDM4_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PRDM4_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PRDM4_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PRDM4_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PRDM4_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PRDM4_BroadBrunello_2.bam
samtools merge -f subbam_merge-PREB.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PREB_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PREB_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PREB_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PREB_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PREB_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PREB_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PREB_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PREB_BroadBrunello_2.bam
samtools merge -f subbam_merge-PRMT3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_2.bam
samtools merge -f subbam_merge-RBCK1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_2.bam
samtools merge -f subbam_merge-RBPJ.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_2.bam
samtools merge -f subbam_merge-RBSN.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_2.bam
samtools merge -f subbam_merge-RELA.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_2.bam
samtools merge -f subbam_merge-REPIN1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_2.bam
samtools merge -f subbam_merge-REST.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_2.bam
samtools merge -f subbam_merge-REXO4.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REXO4_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.REXO4_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.REXO4_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.REXO4_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.REXO4_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.REXO4_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REXO4_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.REXO4_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.REXO4_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.REXO4_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.REXO4_BroadBrunello_2.bam
samtools merge -f subbam_merge-RFX5.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_2.bam
samtools merge -f subbam_merge-RHOXF2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RHOXF2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RHOXF2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RHOXF2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RHOXF2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RHOXF2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RHOXF2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RHOXF2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RHOXF2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RHOXF2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RHOXF2_BroadBrunello_2.bam
samtools merge -f subbam_merge-RLF.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_2.bam
samtools merge -f subbam_merge-RUNX1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_2.bam
samtools merge -f subbam_merge-RXRB.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RXRB_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RXRB_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RXRB_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RXRB_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RXRB_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RXRB_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.RXRB_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.RXRB_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.RXRB_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.RXRB_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.RXRB_BroadBrunello_2.bam
samtools merge -f subbam_merge-SAFB2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_2.bam
samtools merge -f subbam_merge-SAFB.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_2.bam
samtools merge -f subbam_merge-SCMH1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SCMH1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SCMH1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SCMH1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SCMH1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SCMH1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SCMH1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SCMH1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SCMH1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SCMH1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SCMH1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SCMH1_BroadBrunello_2.bam
samtools merge -f subbam_merge-SETDB1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SETDB1_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SETDB1_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SETDB1_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SETDB1_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SETDB1_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SETDB1_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SETDB1_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SETDB1_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SETDB1_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SETDB1_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SETDB1_PositiveControl_2.bam
samtools merge -f subbam_merge-SGSM2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_2.bam
samtools merge -f subbam_merge-SLC2A4RG.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_2.bam
samtools merge -f subbam_merge-SMAD3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_2.bam
samtools merge -f subbam_merge-SMAD4.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_2.bam
samtools merge -f subbam_merge-SMAD5.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_2.bam
samtools merge -f subbam_merge-SMYD3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_2.bam
samtools merge -f subbam_merge-SNAPC5.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SNAPC5_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SNAPC5_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SNAPC5_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SNAPC5_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SNAPC5_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SNAPC5_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SNAPC5_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SNAPC5_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SNAPC5_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SNAPC5_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SNAPC5_BroadBrunello_2.bam
samtools merge -f subbam_merge-SOHLH2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_2.bam
samtools merge -f subbam_merge-SON.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_2.bam
samtools merge -f subbam_merge-SOX5.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_2.bam
samtools merge -f subbam_merge-SP100.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_2.bam
samtools merge -f subbam_merge-SP1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_2.bam
samtools merge -f subbam_merge-SP3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_2.bam
samtools merge -f subbam_merge-SREBF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-SREBF2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_2.bam
samtools merge -f subbam_merge-SRF.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_2.bam
samtools merge -f subbam_merge-STAT1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.STAT1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.STAT1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.STAT1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.STAT1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.STAT1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.STAT1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.STAT1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.STAT1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.STAT1_BroadBrunello_2.bam
samtools merge -f subbam_merge-STAT2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_2.bam
samtools merge -f subbam_merge-STAT3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_2.bam
samtools merge -f subbam_merge-STAT5A.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_2.bam
samtools merge -f subbam_merge-STAT5B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT5B_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.STAT5B_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.STAT5B_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.STAT5B_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.STAT5B_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT5B_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.STAT5B_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.STAT5B_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.STAT5B_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.STAT5B_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.STAT5B_BroadBrunello_2.bam
samtools merge -f subbam_merge-STAT6.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_2.bam
samtools merge -f subbam_merge-TAL1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_2.bam
samtools merge -f subbam_merge-TBPL1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_2.bam
samtools merge -f subbam_merge-TBP.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_2.bam
samtools merge -f subbam_merge-TBX18.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_2.bam
samtools merge -f subbam_merge-TCF12.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_2.bam
samtools merge -f subbam_merge-TCF3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_2.bam
samtools merge -f subbam_merge-TCF4.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_2.bam
samtools merge -f subbam_merge-TEAD4.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_2.bam
samtools merge -f subbam_merge-TERF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_2.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-TERF2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_2.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_2.bam
samtools merge -f subbam_merge-TFCP2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_2.bam
samtools merge -f subbam_merge-TFDP1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_2.bam
samtools merge -f subbam_merge-TFDP2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_2.bam
samtools merge -f subbam_merge-TGIF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-TGIF2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_2.bam
samtools merge -f subbam_merge-THAP11.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_2.bam
samtools merge -f subbam_merge-THAP12.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_2.bam
samtools merge -f subbam_merge-THAP4.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_2.bam
samtools merge -f subbam_merge-THAP5.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_2.bam
samtools merge -f subbam_merge-THAP6.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_2.bam
samtools merge -f subbam_merge-THAP7.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_2.bam
samtools merge -f subbam_merge-THRB.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_2.bam
samtools merge -f subbam_merge-THYN1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_2.bam
samtools merge -f subbam_merge-TP53.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_2.bam
samtools merge -f subbam_merge-TRAFD1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_2.bam
samtools merge -f subbam_merge-TSC22D1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_2.bam
samtools merge -f subbam_merge-TTF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-UBP1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_2.bam
samtools merge -f subbam_merge-USF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-USF2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_2.bam
samtools merge -f subbam_merge-VEZF1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_2.bam
samtools merge -f subbam_merge-WT1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_2.bam
samtools merge -f subbam_merge-XBP1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_2.bam
samtools merge -f subbam_merge-YBX1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_2.bam
samtools merge -f subbam_merge-YBX3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_2.bam
samtools merge -f subbam_merge-YY1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YY1_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.YY1_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.YY1_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.YY1_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.YY1_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YY1_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.YY1_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.YY1_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.YY1_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.YY1_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.YY1_PositiveControl_2.bam
samtools merge -f subbam_merge-ZBED5.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZBED9.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZBTB11.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB11_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB11_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB11_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB11_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB11_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB11_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB11_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB11_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB11_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB11_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB11_PositiveControl_2.bam
samtools merge -f subbam_merge-ZBTB17.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZBTB1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZBTB26.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZBTB2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZBTB33.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZBTB34.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZBTB38.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZBTB44.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZBTB48.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB48_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB48_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB48_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB48_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB48_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB48_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB48_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB48_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB48_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB48_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB48_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZBTB5.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZBTB7B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZEB2.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZFP62.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZFP91.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZHX1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZKSCAN1.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZKSCAN5.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZKSCAN8.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN8_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN8_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN8_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN8_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN8_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN8_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN8_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN8_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN8_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN8_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN8_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF100.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF101.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF117.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF117_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF117_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF117_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF117_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF117_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF117_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF117_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF117_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF117_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF117_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF117_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF121.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF121_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF121_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF121_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF121_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF121_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF121_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF121_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF121_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF121_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF121_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF121_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF124.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF12.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF131.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF131_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF131_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF131_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF131_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF131_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF131_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF131_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF131_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF131_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF131_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF131_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF138.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF138_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF138_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF138_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF138_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF138_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF138_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF138_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF138_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF143.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF143_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF143_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF143_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF143_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF143_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF143_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF143_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF143_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF143_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF143_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF143_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF146.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF160.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF169.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF175.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF181.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF195.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF202.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF207.merged.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF207_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF207_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF207_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF207_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF207_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF207_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF207_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF207_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF207_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF207_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF215.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF224.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF22.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF239.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF24.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF254.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF266.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF267.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF273.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF274.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF274_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF274_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF274_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF274_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF274_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF274_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF274_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF274_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF274_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF274_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF274_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF275.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF276.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF277.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF277_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF277_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF277_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF277_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF277_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF277_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF277_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF277_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF277_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF277_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF277_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF280A.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_2.bam
samtools merge -f subbam_merge-ZNF280B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF280D.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF28.merged.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF28_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF28_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF28_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF28_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF28_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF28_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF28_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF28_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF28_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF28_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF292.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF317.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF318.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF320.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF322.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF322_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF322_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF322_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF322_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF322_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF322_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF322_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF322_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF322_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF322_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF322_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF326.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF32.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF33A.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF33B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33B_Weissman_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33B_Weissman_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33B_Weissman_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33B_Weissman_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33B_Weissman_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33B_Weissman_1.bam
samtools merge -f subbam_merge-ZNF346.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF354B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF37A.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF384.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF394.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF397.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF397_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF397_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF397_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF397_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF397_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF397_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF397_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF397_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF397_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF397_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF397_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF410.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF428.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF428_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF428_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF428_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF428_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF428_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF428_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF428_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF428_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF428_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF428_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF428_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF431.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF440.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF451.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF460.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF468.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF473.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF473_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF473_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF473_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF473_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF473_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF473_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF473_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF473_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF473_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF473_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF473_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF480.merged.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF480_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF480_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF480_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF480_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF480_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF480_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF480_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF480_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF480_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF480_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF493.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF496.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF507.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF510.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF511.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF512.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF514.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF518A.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518A_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518A_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518A_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518A_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518A_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518A_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518A_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518A_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518A_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518A_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518A_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF518B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF519.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF544.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF558.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF559.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF561.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF562.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF581.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF584.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF587B.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF587.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF589.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF589_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF589_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF589_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF589_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF589_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF589_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF589_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF589_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF589_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF589_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF589_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF595.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF598.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF600.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF609.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF609_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF609_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF609_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF609_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF609_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF609_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF609_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF609_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF609_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF609_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF609_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF621.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF627.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF639.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF644.merged.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF644_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF644_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF644_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF644_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF644_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF644_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF644_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF644_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF644_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF644_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF655.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF664.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF672.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF675.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF675_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF675_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF675_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF675_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF675_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF675_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF675_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF675_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF675_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF675_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF675_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF692.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF700.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF701.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF706.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF714.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF714_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF714_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF714_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF714_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF714_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF714_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF714_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF714_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF714_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF714_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF717.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF721.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF726.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF726_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF726_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF726_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF726_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF726_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF726_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF726_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF726_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF726_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF726_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF726_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF740.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF749.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF74.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF75A.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF761.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF766.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF766_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF766_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF766_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF766_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF766_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF766_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF766_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF766_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF766_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF766_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF766_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF768.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF76.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF770.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF770_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF770_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF770_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF770_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF770_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF770_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF770_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF770_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF770_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF770_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF770_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF776.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF77.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF780A.merged.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF780A_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF780A_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF780A_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF780A_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF780A_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF780A_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF780A_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF780A_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF780A_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF780A_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF780A_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF789.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF791.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF7.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF800.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF800_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF800_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF800_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF800_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF800_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF800_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF800_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF800_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF800_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF800_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF800_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF808.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF816.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF830.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF83.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF83_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF83_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF83_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF83_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF83_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF83_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF83_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF83_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF83_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF83_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF83_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF84.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZNF852.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZSCAN12.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZSCAN25.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZSCAN26.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZSCAN32.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZSCAN9.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_2.bam
samtools merge -f subbam_merge-ZZZ3.merged.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_1.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_1.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_1.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_1.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_1.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_1.bam CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_2.bam CL03-temp/CL03.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_2.bam CL09-temp/CL09.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_2.bam CL10-temp/CL10.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_2.bam CL13-temp/CL13.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_2.bam CL14-temp/CL14.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_2.bam