python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-safes.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-safes.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ADNP2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ADNP2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ADNP.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ADNP.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-AHCTF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-AHCTF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-AKAP8L.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-AKAP8L.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-AKAP8.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-AKAP8.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ANKZF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ANKZF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ARID2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ARID2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ARID3A.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ARID3A.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ARNT.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ARNT.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ASH1L.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ASH1L.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ATF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ATF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ATF2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ATF2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ATF4.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ATF4.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ATF6B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ATF6B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ATF6.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ATF6.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ATF7.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ATF7.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ATMIN.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ATMIN.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-BACH1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-BACH1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-BAZ2A.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-BAZ2A.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-BAZ2B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-BAZ2B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-BHLHE40.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-BHLHE40.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-BPTF.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-BPTF.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-BRF2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-BRF2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CAMTA1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CAMTA1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CDC5L.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CDC5L.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CEBPG.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CEBPG.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CEBPZ.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CEBPZ.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CENPA.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CENPA.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CENPBD1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CENPBD1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CENPS.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CENPS.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CENPT.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CENPT.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CENPX.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CENPX.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CGGBP1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CGGBP1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CHAMP1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CHAMP1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CHCHD3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CHCHD3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CREB1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CREB1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CREB3L2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CREB3L2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CREB3L4.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CREB3L4.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CREBZF.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CREBZF.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CREM.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CREM.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CSRNP1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CSRNP1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CTCFL.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CTCFL.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CTCF.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CTCF.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CXXC1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CXXC1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-CXXC5.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-CXXC5.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-DDIT3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-DDIT3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-DEAF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-DEAF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-DMTF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-DMTF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-DNMT1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-DNMT1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-DNTTIP1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-DNTTIP1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-DR1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-DR1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-DRAP1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-DRAP1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-E2F3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-E2F3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-E2F4.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-E2F4.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-E2F5.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-E2F5.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-E2F6.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-E2F6.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-E4F1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-E4F1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ELF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ELF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ELF2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ELF2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ELF4.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ELF4.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ELK1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ELK1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ERF.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ERF.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ESRRA.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ESRRA.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ESRRB.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ESRRB.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ETV1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ETV1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ETV4.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ETV4.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ETV5.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ETV5.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-FAM200B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-FAM200B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-FOXA3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-FOXA3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-FOXJ3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-FOXJ3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-FOXK2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-FOXK2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-FOXN2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-FOXN2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-GABPA.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-GABPA.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-GATA1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-GATA1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-GATA2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-GATA2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-GATAD2A.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-GATAD2A.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-GFI1B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-GFI1B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-GLYR1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-GLYR1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-GPBP1L1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-GPBP1L1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-GPBP1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-GPBP1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-GTF2B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-GTF2B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-GTF2I.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-GTF2I.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-GTF3A.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-GTF3A.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-GZF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-GZF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HBP1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HBP1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HES6.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HES6.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HHEX.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HHEX.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HIC2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HIC2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HIF1A.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HIF1A.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HINFP.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HINFP.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HIVEP1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HIVEP1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HMBOX1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HMBOX1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HMG20A.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HMG20A.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HMG20B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HMG20B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HMGA1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HMGA1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HMGN3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HMGN3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HOMEZ.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HOMEZ.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HOXB2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HOXB2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HOXB3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HOXB3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HOXB9.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HOXB9.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HSF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HSF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-HSF2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-HSF2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-IKZF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-IKZF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-IRF3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-IRF3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-IRF9.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-IRF9.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-JRKL.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-JRKL.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-JUNB.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-JUNB.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-JUND.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-JUND.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-KAT7.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-KAT7.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-KCMF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-KCMF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-KDM2A.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-KDM2A.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-KDM2B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-KDM2B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-KDM5B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-KDM5B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-KLF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-KLF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-KLF3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-KLF3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-KMT2A.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-KMT2A.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-LCORL.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-LCORL.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-LEF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-LEF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-LIN28B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-LIN28B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-LIN54.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-LIN54.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-LYL1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-LYL1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MAFG.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MAFG.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MAX.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MAX.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MAZ.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MAZ.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MBD1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MBD1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MBD2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MBD2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MBD3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MBD3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MBD4.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MBD4.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MBNL2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MBNL2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MECOM.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MECOM.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MECP2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MECP2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MEF2C.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MEF2C.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MEIS2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MEIS2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MGA.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MGA.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MLXIP.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MLXIP.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MLX.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MLX.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MSANTD3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MSANTD3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MTERF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MTERF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MTERF2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MTERF2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MTERF3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MTERF3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MTERF4.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MTERF4.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MTF2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MTF2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MXD1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MXD1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MXI1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MXI1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MYBL2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MYBL2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MYB.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MYB.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MYC.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MYC.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MYNN.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MYNN.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MYSM1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MYSM1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-MZF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-MZF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NAIF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NAIF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NCOA1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NCOA1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NCOA3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NCOA3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NFAT5.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NFAT5.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NFATC3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NFATC3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NFE2L1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NFE2L1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NFE2L2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NFE2L2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NFE2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NFE2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NFE4.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NFE4.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NFX1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NFX1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NFXL1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NFXL1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NFYA.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NFYA.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NFYB.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NFYB.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NFYC.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NFYC.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NKRF.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NKRF.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NME2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NME2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NR1H2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NR1H2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NR1H3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NR1H3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NR2C1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NR2C1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NR2C2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NR2C2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NR2F6.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NR2F6.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NR3C1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NR3C1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NR6A1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NR6A1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-NRF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-NRF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-PA2G4.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-PA2G4.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-PBX2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-PBX2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-PCGF6.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-PCGF6.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-PHF19.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-PHF19.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-PHF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-PHF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-PHF20.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-PHF20.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-PIN1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-PIN1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-PITX1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-PITX1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-PKNOX1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-PKNOX1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-PLAGL1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-PLAGL1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-PLSCR1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-PLSCR1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-PRDM4.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-PRDM4.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-PREB.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-PREB.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-PRMT3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-PRMT3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-RBCK1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-RBCK1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-RBPJ.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-RBPJ.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-RBSN.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-RBSN.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-RELA.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-RELA.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-REPIN1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-REPIN1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-REST.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-REST.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-REXO4.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-REXO4.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-RFX5.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-RFX5.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-RHOXF2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-RHOXF2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-RLF.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-RLF.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-RUNX1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-RUNX1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-RXRB.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-RXRB.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SAFB2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SAFB2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SAFB.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SAFB.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SCMH1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SCMH1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SETDB1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SETDB1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SGSM2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SGSM2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SLC2A4RG.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SLC2A4RG.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SMAD3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SMAD3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SMAD4.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SMAD4.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SMAD5.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SMAD5.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SMYD3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SMYD3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SNAPC5.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SNAPC5.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SOHLH2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SOHLH2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SON.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SON.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SOX5.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SOX5.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SP100.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SP100.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SP1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SP1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SP3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SP3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SREBF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SREBF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SREBF2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SREBF2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-SRF.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-SRF.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-STAT1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-STAT1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-STAT2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-STAT2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-STAT3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-STAT3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-STAT5A.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-STAT5A.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-STAT5B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-STAT5B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-STAT6.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-STAT6.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TAL1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TAL1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TBPL1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TBPL1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TBP.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TBP.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TBX18.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TBX18.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TCF12.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TCF12.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TCF3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TCF3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TCF4.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TCF4.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TEAD4.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TEAD4.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TERF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TERF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TERF2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TERF2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TFCP2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TFCP2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TFDP1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TFDP1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TFDP2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TFDP2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TGIF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TGIF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TGIF2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TGIF2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-THAP11.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-THAP11.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-THAP12.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-THAP12.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-THAP4.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-THAP4.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-THAP5.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-THAP5.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-THAP6.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-THAP6.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-THAP7.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-THAP7.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-THRB.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-THRB.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-THYN1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-THYN1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TP53.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TP53.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TRAFD1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TRAFD1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TSC22D1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TSC22D1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-TTF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-TTF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-UBP1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-UBP1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-USF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-USF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-USF2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-USF2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-VEZF1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-VEZF1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-WT1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-WT1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-XBP1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-XBP1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-YBX1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-YBX1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-YBX3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-YBX3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-YY1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-YY1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZBED5.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZBED5.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZBED9.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZBED9.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZBTB11.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZBTB11.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZBTB17.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZBTB17.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZBTB1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZBTB1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZBTB26.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZBTB26.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZBTB2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZBTB2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZBTB33.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZBTB33.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZBTB34.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZBTB34.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZBTB38.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZBTB38.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZBTB44.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZBTB44.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZBTB48.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZBTB48.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZBTB5.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZBTB5.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZBTB7B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZBTB7B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZEB2.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZEB2.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZFP62.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZFP62.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZFP91.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZFP91.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZHX1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZHX1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZKSCAN1.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZKSCAN1.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZKSCAN5.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZKSCAN5.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZKSCAN8.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZKSCAN8.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF100.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF100.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF101.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF101.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF117.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF117.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF121.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF121.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF124.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF124.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF12.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF12.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF131.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF131.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF138.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF138.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF143.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF143.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF146.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF146.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF160.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF160.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF169.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF169.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF175.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF175.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF181.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF181.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF195.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF195.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF202.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF202.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF207.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF207.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF215.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF215.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF224.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF224.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF22.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF22.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF239.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF239.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF24.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF24.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF254.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF254.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF266.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF266.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF267.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF267.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF273.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF273.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF274.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF274.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF275.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF275.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF276.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF276.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF277.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF277.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF280A.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF280A.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF280B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF280B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF280D.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF280D.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF28.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF28.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF292.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF292.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF317.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF317.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF318.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF318.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF320.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF320.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF322.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF322.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF326.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF326.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF32.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF32.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF33A.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF33A.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF33B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF33B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF346.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF346.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF354B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF354B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF37A.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF37A.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF384.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF384.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF394.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF394.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF397.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF397.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF410.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF410.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF428.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF428.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF431.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF431.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF440.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF440.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF451.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF451.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF460.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF460.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF468.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF468.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF473.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF473.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF480.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF480.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF493.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF493.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF496.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF496.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF507.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF507.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF510.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF510.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF511.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF511.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF512.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF512.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF514.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF514.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF518A.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF518A.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF518B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF518B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF519.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF519.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF544.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF544.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF558.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF558.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF559.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF559.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF561.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF561.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF562.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF562.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF581.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF581.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF584.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF584.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF587B.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF587B.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF587.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF587.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF589.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF589.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF595.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF595.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF598.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF598.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF600.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF600.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF609.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF609.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF621.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF621.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF627.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF627.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF639.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF639.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF644.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF644.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF655.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF655.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF664.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF664.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF672.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF672.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF675.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF675.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF692.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF692.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF700.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF700.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF701.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF701.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF706.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF706.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF714.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF714.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF717.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF717.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF721.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF721.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF726.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF726.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF740.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF740.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF749.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF749.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF74.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF74.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF75A.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF75A.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF761.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF761.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF766.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF766.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF768.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF768.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF76.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF76.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF770.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF770.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF776.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF776.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF77.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF77.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF780A.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF780A.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF789.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF789.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF791.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF791.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF7.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF7.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF800.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF800.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF808.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF808.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF816.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF816.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF830.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF830.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF83.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF83.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF84.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF84.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZNF852.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZNF852.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZSCAN12.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZSCAN12.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZSCAN25.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZSCAN25.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZSCAN26.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZSCAN26.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZSCAN32.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZSCAN32.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZSCAN9.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZSCAN9.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3/025927-L418_D6_D10_ATAC_CL01-UGAv3-174-CGCACTGCTCCTGAT_trimmed.trimmed.hg38.BWA.unique.nochrM.hg38.BC_dedup.MACS2_peaks.narrowPeak.gz 0 subbam_merge-ZZZ3.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes subbam_merge-ZZZ3.merged.sorted.MACS.RPM -singleFieldRegion -uniqueBAM &