python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204618.4569 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204618.4569.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204894.4845 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_204894.4845.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205125.5076 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205125.5076.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205296.5247 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_ACOC_205296.5247.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205410.5361 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205410.5361.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205705.5656 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205705.5656.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205735.5686 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205735.5686.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205757.5708 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205757.5708.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205953.5904 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_DTKP_205953.5904.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206089.1540 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206089.1540.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206175.1626 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206175.1626.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206529.1980 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206529.1980.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206639.2090 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206639.2090.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206771.2222 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_GEEX_206771.2222.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_206926.1126 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_206926.1126.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207317.767 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207317.767.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207448.898 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207448.898.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207539.989 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_MEPR_207539.989.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_207988.2689 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_207988.2689.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208065.2766 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208065.2766.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208090.2791 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208090.2791.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208161.2862 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208161.2862.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208208.2909 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_PROT_208208.2909.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_TMMO_208513.291 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_TMMO_208513.291.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209141.3842 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209141.3842.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209196.3897 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209196.3897.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209299.4000 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209299.4000.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209390.4091 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209390.4091.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209632.4333 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209632.4333.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209637.4338 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209637.4338.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209757.4458 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA1_209757.4458.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA2_210395.3596 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA2_210395.3596.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210755.6206 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210755.6206.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210814.6265 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210814.6265.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210825.6276 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210825.6276.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210841.6292 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210841.6292.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210935.6386 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210935.6386.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210937.6388 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_210937.6388.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211126.6577 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211126.6577.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211142.6593 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.0Safe_safe_UNA3_211142.6593.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ADNP2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ADNP_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AHCTF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.AKAP8L_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ANKZF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ANKZF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ANKZF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ANKZF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARID2_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARID3A_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ARNT_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ASH1L_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF1_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF4_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF6B_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF6_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATF7_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ATMIN_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BACH1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2A_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BAZ2B_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BHLHE40_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BPTF_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.BRF2_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CAMTA1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CDC5L_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CEBPG_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CEBPZ_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CEBPZ_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CEBPZ_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CEBPZ_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPA_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPA_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPBD1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPS_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPT_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPT_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPT_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPT_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CENPX_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CGGBP1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CHAMP1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CHCHD3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREB3L4_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREBZF_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CREM_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CSRNP1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CTCFL_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CTCF_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CXXC1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.CXXC5_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DDIT3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DEAF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DMTF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DNMT1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DNMT1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DNMT1_Weissman_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DNMT1_Weissman_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DNTTIP1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DR1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.DRAP1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F4_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F5_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E2F6_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.E4F1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF1_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELF4_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ELK1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ERF_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ESRRA_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ESRRB_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV4_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ETV5_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FAM200B_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXA3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXJ3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXK2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXK2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.FOXN2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GABPA_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATA1_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATA1_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATA1_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATA1_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATA2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GATAD2A_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GFI1B_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GFI1B_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GFI1B_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GFI1B_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GLYR1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GPBP1L1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF2B_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF2I_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GTF3A_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.GZF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HBP1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HES6_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HHEX_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HHEX_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HHEX_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HHEX_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HIC2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HIC2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HIF1A_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HINFP_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HIVEP1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMBOX1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMG20A_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMG20B_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMGA1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMGA1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMGA1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMGA1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HMGN3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOMEZ_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HOXB9_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HSF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.HSF2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IKZF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IRF3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.IRF9_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JRKL_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JUNB_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JUNB_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JUNB_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JUNB_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.JUND_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KAT7_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KCMF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM2A_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM2A_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM2A_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM2A_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM2B_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM5B_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM5B_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM5B_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KDM5B_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KLF1_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KLF3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.KMT2A_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LCORL_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LCORL_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LCORL_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LCORL_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LEF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LIN28B_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LIN54_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.LYL1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAFG_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAX_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAX_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAX_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAX_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MAZ_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBD4_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MBNL2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MECOM_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MECP2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MEF2C_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MEIS2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MGA_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MLX_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MLX_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MLXIP_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MSANTD3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MSANTD3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTERF4_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MTF2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MXD1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MXI1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYB_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYB_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYB_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYB_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYBL2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYBL2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYC_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYNN_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MYSM1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.MZF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NAIF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NCOA1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NCOA3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFAT5_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFAT5_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFAT5_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFAT5_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFATC3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2L2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE2_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE4_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE4_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE4_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFE4_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFX1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFXL1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFXL1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFXL1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFXL1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYA_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYA_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYA_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYA_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYB_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYC_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYC_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYC_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NFYC_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NKRF_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NME2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR1H2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR1H3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2C1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2C2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR2F6_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR3C1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NR6A1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.NRF1_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PA2G4_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PBX2_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PCGF6_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF19_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PHF20_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PIN1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PITX1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PKNOX1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PLAGL1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PLSCR1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PLSCR1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PLSCR1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PLSCR1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PRDM4_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PRDM4_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PRDM4_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PRDM4_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PREB_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PREB_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.PRMT3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBCK1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBPJ_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RBSN_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RELA_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REPIN1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REST_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REXO4_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REXO4_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REXO4_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.REXO4_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RFX5_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RHOXF2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RHOXF2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RLF_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RUNX1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RXRB_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RXRB_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RXRB_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.RXRB_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SAFB2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SAFB_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SCMH1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SCMH1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SCMH1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SCMH1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SETDB1_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SETDB1_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SGSM2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SLC2A4RG_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD4_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMAD5_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SMYD3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SNAPC5_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SNAPC5_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SNAPC5_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SNAPC5_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SOHLH2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SON_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SOX5_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP100_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SP3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SREBF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SREBF2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.SRF_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT5A_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT5B_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT5B_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT5B_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT5B_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.STAT6_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TAL1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBPL1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBP_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TBX18_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF12_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TCF4_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TEAD4_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TERF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TERF2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFCP2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFDP1_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TFDP2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TGIF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TGIF2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP11_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP12_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP4_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP5_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP6_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THAP7_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THRB_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.THYN1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TP53_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TRAFD1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TSC22D1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.TTF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.UBP1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.USF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.USF2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.VEZF1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.WT1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.XBP1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YBX1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YBX3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YY1_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YY1_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YY1_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.YY1_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBED5_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBED9_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB11_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB11_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB11_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB11_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB17_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB26_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB33_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB34_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB38_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB44_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB48_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB48_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB48_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB48_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB5_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZBTB7B_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZEB2_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZFP62_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZFP91_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZHX1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN1_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN5_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN8_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN8_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN8_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZKSCAN8_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF100_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF101_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF117_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF117_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF117_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF117_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF121_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF121_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF124_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF12_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF131_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF131_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF131_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF131_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF138_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF138_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF143_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF143_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF143_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF143_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF146_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF160_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF169_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF175_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF181_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF195_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF202_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF207_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF207_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF215_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF224_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF22_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF239_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF24_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF254_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF266_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF267_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF273_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF274_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF274_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF274_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF274_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF275_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF276_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF277_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF277_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF277_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF277_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280A_PositiveControl_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280B_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF280D_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF28_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF28_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF292_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF317_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF318_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF320_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF322_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF322_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF322_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF322_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF326_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF32_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33A_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33B_Weissman_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF33B_Weissman_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF346_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF354B_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF37A_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF384_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF394_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF397_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF397_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF397_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF397_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF3_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF410_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF428_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF428_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF428_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF428_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF431_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF440_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF451_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF460_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF468_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF473_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF473_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF473_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF473_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF480_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF480_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF493_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF496_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF507_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF510_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF511_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF512_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF514_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518A_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518A_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518A_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518A_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF518B_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF519_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF544_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF558_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF559_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF561_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF562_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF581_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF584_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587B_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF587_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF589_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF589_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF589_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF589_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF595_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF598_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF600_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF609_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF609_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF609_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF609_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF621_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF627_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF639_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF644_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF644_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF655_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF664_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF672_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF675_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF675_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF692_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF700_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF701_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF706_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF714_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF714_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF717_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF721_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF726_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF726_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF740_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF749_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF74_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF75A_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF761_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF766_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF766_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF766_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF766_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF768_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF76_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF770_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF770_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF770_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF770_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF776_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF77_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF780A_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF780A_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF789_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF791_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF7_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF800_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF800_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF800_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF800_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF808_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF816_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF830_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF83_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF83_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF83_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF83_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF84_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZNF852_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN12_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN25_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN26_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN32_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZSCAN9_BroadBrunello_2.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_1 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_1.bam -fullBC
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq_BAM_barcode_subset.py UG-SHARE-L418_D6_D10_ATAC_CL01-UGAv3.hg38.BWA.unique.nochrM.hg38.BC_dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_2 0 1 for CL01-temp/CL01.ATAC_min500.sgRNA_min10_75p_overlap.ZZZ3_PositiveControl_2.bam -fullBC