Index of /kundaje/marinovg/oak/various/ENCODE4/single-cell/2023-08-14-UG-data

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]ATACTSSscore.txt2023-08-18 19:11 838  
[ ]CL01.ATAC_min500.sgRNA_min10_75p_overlap2023-08-30 17:44 371K 
[ ]CL01.ATAC_min500.sgRNA_min20_75p_overlap2023-08-30 17:44 371K 
[ ]CL03.ATAC_min500.sgRNA_min10_75p_overlap2023-08-30 17:44 390K 
[ ]CL03.ATAC_min500.sgRNA_min20_75p_overlap2023-08-30 17:44 390K 
[ ]CL09.ATAC_min500.sgRNA_min10_75p_overlap2023-08-30 17:44 473K 
[ ]CL09.ATAC_min500.sgRNA_min20_75p_overlap2023-08-30 17:44 473K 
[ ]CL10.ATAC_min500.sgRNA_min10_75p_overlap2023-08-30 17:44 511K 
[ ]CL10.ATAC_min500.sgRNA_min20_75p_overlap2023-08-30 17:44 511K 
[ ]CL13.ATAC_min500.sgRNA_min10_75p_overlap2023-08-30 17:44 516K 
[ ]CL13.ATAC_min500.sgRNA_min20_75p_overlap2023-08-30 17:44 516K 
[ ]CL14.ATAC_min500.sgRNA_min10_75p_overlap2023-08-30 17:44 419K 
[ ]CL14.ATAC_min500.sgRNA_min20_75p_overlap2023-08-30 17:44 419K 
[ ]CLall.ATAC_min500.sgRNA_min20_75p_overlap2023-09-01 10:48 2.6M 
[ ]CLall.ATAC_min500.sgRNA_min20_75p_overlap.edited2023-09-01 10:49 2.6M 
[ ]CLall.ATAC_min500.sgRNA_min20_75p_overlap.edited.hist2023-09-01 10:49 3.7K 
[DIR]DESeq2/2023-09-01 12:12 -  
[DIR]PNG/2023-08-30 16:40 -  
[IMG]RNA-ATAC-sgRNA.combined-counts-01.ATAC-vs-RNA.png2023-08-30 17:31 328K 
[IMG]RNA-ATAC-sgRNA.combined-counts-01.ATAC-vs-sgRNA.png2023-08-30 17:31 374K 
[IMG]RNA-ATAC-sgRNA.combined-counts-01.RNA-vs-sgRNA.png2023-08-30 17:31 287K 
[ ]RNA-ATAC-sgRNA.combined-counts-01.files2023-08-30 17:29 283  
[ ]RNA-ATAC-sgRNA.combined-counts-01.table2023-08-30 17:30 30M 
[IMG]RNA-ATAC-sgRNA.combined-counts-03.ATAC-vs-RNA.png2023-08-30 17:31 365K 
[IMG]RNA-ATAC-sgRNA.combined-counts-03.ATAC-vs-sgRNA.png2023-08-30 17:31 548K 
[IMG]RNA-ATAC-sgRNA.combined-counts-03.RNA-vs-sgRNA.png2023-08-30 17:31 471K 
[ ]RNA-ATAC-sgRNA.combined-counts-03.files2023-08-30 17:29 283  
[ ]RNA-ATAC-sgRNA.combined-counts-03.table2023-08-30 17:30 31M 
[IMG]RNA-ATAC-sgRNA.combined-counts-09.ATAC-vs-RNA.png2023-08-30 17:31 372K 
[IMG]RNA-ATAC-sgRNA.combined-counts-09.ATAC-vs-sgRNA.png2023-08-30 17:31 466K 
[IMG]RNA-ATAC-sgRNA.combined-counts-09.RNA-vs-sgRNA.png2023-08-30 17:31 300K 
[ ]RNA-ATAC-sgRNA.combined-counts-09.files2023-08-30 17:29 283  
[ ]RNA-ATAC-sgRNA.combined-counts-09.table2023-08-30 17:30 30M 
[IMG]RNA-ATAC-sgRNA.combined-counts-10.ATAC-vs-RNA.png2023-08-30 17:31 361K 
[IMG]RNA-ATAC-sgRNA.combined-counts-10.ATAC-vs-sgRNA.png2023-08-30 17:31 533K 
[IMG]RNA-ATAC-sgRNA.combined-counts-10.RNA-vs-sgRNA.png2023-08-30 17:31 395K 
[ ]RNA-ATAC-sgRNA.combined-counts-10.files2023-08-30 17:29 283  
[ ]RNA-ATAC-sgRNA.combined-counts-10.table2023-08-30 17:30 31M 
[IMG]RNA-ATAC-sgRNA.combined-counts-13.ATAC-vs-RNA.png2023-08-30 17:31 377K 
[IMG]RNA-ATAC-sgRNA.combined-counts-13.ATAC-vs-sgRNA.png2023-08-30 17:31 553K 
[IMG]RNA-ATAC-sgRNA.combined-counts-13.RNA-vs-sgRNA.png2023-08-30 17:31 385K 
[ ]RNA-ATAC-sgRNA.combined-counts-13.files2023-08-30 17:29 283  
[ ]RNA-ATAC-sgRNA.combined-counts-13.table2023-08-30 17:30 31M 
[IMG]RNA-ATAC-sgRNA.combined-counts-14.ATAC-vs-RNA.png2023-08-30 17:31 379K 
[IMG]RNA-ATAC-sgRNA.combined-counts-14.ATAC-vs-sgRNA.png2023-08-30 17:31 464K 
[IMG]RNA-ATAC-sgRNA.combined-counts-14.RNA-vs-sgRNA.png2023-08-30 17:31 385K 
[ ]RNA-ATAC-sgRNA.combined-counts-14.files2023-08-30 17:29 283  
[ ]RNA-ATAC-sgRNA.combined-counts-14.table2023-08-30 17:30 31M 
[ ]SAMstats_ATAC.BC_dedup.table2023-08-30 16:28 695  
[ ]SAMstats_ATAC.chrM.table2023-08-30 16:28 1.3K 
[ ]SAMstats_ATAC.files2023-08-30 16:28 1.7K 
[ ]SAMstats_ATAC.table2023-08-30 16:28 1.4K 
[ ]SAMstats_ATAC.unique.table2023-08-30 16:28 760  
[ ]SAMstats_ATAC_subbam-files.tar.gz2023-09-01 00:07 15K 
[ ]SAMstats_ATAC_subbam.files2023-08-31 10:11 14K 
[ ]SAMstats_ATAC_subbam.table2023-08-31 23:00 18K 
[ ]SAMstats_RNA.files2023-08-30 16:29 690  
[ ]SAMstats_RNA.table2023-08-30 16:30 811  
[ ]SAMstats_files.tar.gz2023-08-30 16:28 1.2K 
[DIR]SAMstats_files/2023-08-30 16:30 -  
[TXT]SHARE-seq_BAM_barcode_subset-CL01.sh2023-08-30 17:51 342K 
[TXT]SHARE-seq_BAM_barcode_subset-CL03.sh2023-08-30 17:50 345K 
[TXT]SHARE-seq_BAM_barcode_subset-CL09.sh2023-08-30 17:57 345K 
[TXT]SHARE-seq_BAM_barcode_subset-CL10.sh2023-08-30 17:59 347K 
[TXT]SHARE-seq_BAM_barcode_subset-CL13.sh2023-08-30 18:04 344K 
[TXT]SHARE-seq_BAM_barcode_subset-CL14.sh2023-08-30 18:05 343K 
[ ]UG-SHARE-L472_D6_D10_sgRNA_724_CL01-UGAv3.UMI.files2023-08-30 17:08 517  
[ ]UG-SHARE-L474_D6_D10_sgRNA_727_CL03-UGAv3.UMI.files2023-08-30 17:08 517  
[ ]UG-SHARE-L475_D6_D10_sgRNA_737_CL09-UGAv3.UMI.files2023-08-30 17:08 517  
[ ]UG-SHARE-L476_D6_D10_sgRNA_738_CL10-UGAv3.UMI.files2023-08-30 17:08 515  
[ ]UG-SHARE-L477_D6_D10_sgRNA_719_CL13-UGAv3.UMI.files2023-08-30 17:08 517  
[ ]UG-SHARE-L478_D6_D10_sgRNA_720_CL14-UGAv3.UMI.files2023-08-30 17:08 517  
[TXT]list_subbam_RPM.sh2023-08-31 15:48 196K 
[TXT]list_subbam_SAMstats.sh2023-08-31 10:10 119K 
[TXT]list_subbam_bigWig-5p.sh2023-08-31 10:10 97K 
[TXT]list_subbam_bigWig.sh2023-08-31 10:10 95K 
[TXT]list_subbam_files.sh2023-08-31 09:12 67K 
[TXT]list_subbam_index.sh2023-08-31 10:10 47K 
[TXT]list_subbam_make5pwig.sh2023-08-31 10:10 109K 
[TXT]list_subbam_makewig.sh2023-08-31 10:10 102K 
[ ]list_subbam_merge.config2023-08-31 09:13 37K 
[TXT]list_subbam_merge.sh2023-08-31 09:14 406K 
[TXT]list_subbam_scatter.sh2023-08-31 10:10 63K 
[TXT]list_subbam_sort.sh2023-08-31 09:55 57K 
[ ]signal-around-HeLas3-CTCF-ENCFF548ARU-ChIP-CTCF2023-09-01 12:32 3.9K 
[ ]signal-around-HeLas3-CTCF-ENCFF548ARU-ChIP-safes2023-09-01 12:31 3.9K 
[ ]signal-around-HeLas3-GABPA-ENCFF168BDU-ChIP-GABPA2023-09-01 12:32 3.8K 
[ ]signal-around-HeLas3-GABPA-ENCFF168BDU-ChIP-safes2023-09-01 12:32 3.8K 
[ ]signal-around-HeLas3-JUND-ENCFF995QMN-ChIP-JUND2023-09-01 12:32 4.0K 
[ ]signal-around-HeLas3-JUND-ENCFF995QMN-ChIP-safes2023-09-01 12:32 4.0K 
[ ]signal-around-HeLas3-MAX-ENCFF666XCS-ChIP-MAX2023-09-01 12:32 3.8K 
[ ]signal-around-HeLas3-MAX-ENCFF666XCS-ChIP-safes2023-09-01 12:32 3.8K 
[ ]signal-around-HeLas3-MAZ-ENCFF424JHD-ChIP-MAZ2023-09-01 12:32 3.8K 
[ ]signal-around-HeLas3-MAZ-ENCFF424JHD-ChIP-safes2023-09-01 12:32 3.8K 
[ ]signal-around-HeLas3-NFYA-ENCFF865QSV-ChIP-NFYA2023-09-01 12:32 3.8K 
[ ]signal-around-HeLas3-NFYA-ENCFF865QSV-ChIP-safes2023-09-01 12:32 3.8K 
[ ]signal-around-HeLas3-NFYB-ENCFF191KVV-ChIP-NFYB2023-09-01 12:32 3.8K 
[ ]signal-around-HeLas3-NFYB-ENCFF191KVV-ChIP-safes2023-09-01 12:32 3.8K 
[ ]signal-around-HeLas3-REST-ENCFF096JDA-ChIP-REST2023-09-01 12:32 3.8K 
[ ]signal-around-HeLas3-REST-ENCFF096JDA-ChIP-safes2023-09-01 12:32 3.9K 
[DIR]subbam_MACS_RPM-png/2023-08-31 22:11 -  
[ ]subbam_MACS_RPM.UMAP2023-08-31 22:13 11K 
[ ]subbam_MACS_RPM.files2023-08-31 10:10 21K 
[ ]subbam_MACS_RPM.sgRNA.UMAP2023-08-31 22:59 4.7M 
[TXT]subbam_RNA-individual.sh2023-09-01 00:08 66K 
[DIR]subbam_RNA-temp-files/2023-09-01 11:04 -  
[ ]subbam_RNA.TPM.UMAP2023-09-01 11:05 11K 
[ ]subbam_RNA.TPM.files2023-09-01 00:11 15K 
[ ]subbam_RNA.TPM.targets-only.table2023-09-01 11:04 2.5K 
[ ]subbam_RNA.config2023-09-01 09:02 2.4M 
[ ]subbam_RNA.counts.files2023-09-01 00:11 16K 
[DIR]subbam_list-temp-files/2023-08-31 09:55 -  
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