python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-safes.merged.sorted.bam SAMstats-subbam_merge-safes -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ADNP2.merged.sorted.bam SAMstats-subbam_merge-ADNP2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ADNP.merged.sorted.bam SAMstats-subbam_merge-ADNP -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-AHCTF1.merged.sorted.bam SAMstats-subbam_merge-AHCTF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-AKAP8L.merged.sorted.bam SAMstats-subbam_merge-AKAP8L -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-AKAP8.merged.sorted.bam SAMstats-subbam_merge-AKAP8 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ANKZF1.merged.sorted.bam SAMstats-subbam_merge-ANKZF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ARID2.merged.sorted.bam SAMstats-subbam_merge-ARID2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ARID3A.merged.sorted.bam SAMstats-subbam_merge-ARID3A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ARNT.merged.sorted.bam SAMstats-subbam_merge-ARNT -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ASH1L.merged.sorted.bam SAMstats-subbam_merge-ASH1L -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ATF1.merged.sorted.bam SAMstats-subbam_merge-ATF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ATF2.merged.sorted.bam SAMstats-subbam_merge-ATF2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ATF4.merged.sorted.bam SAMstats-subbam_merge-ATF4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ATF6B.merged.sorted.bam SAMstats-subbam_merge-ATF6B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ATF6.merged.sorted.bam SAMstats-subbam_merge-ATF6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ATF7.merged.sorted.bam SAMstats-subbam_merge-ATF7 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ATMIN.merged.sorted.bam SAMstats-subbam_merge-ATMIN -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-BACH1.merged.sorted.bam SAMstats-subbam_merge-BACH1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-BAZ2A.merged.sorted.bam SAMstats-subbam_merge-BAZ2A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-BAZ2B.merged.sorted.bam SAMstats-subbam_merge-BAZ2B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-BHLHE40.merged.sorted.bam SAMstats-subbam_merge-BHLHE40 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-BPTF.merged.sorted.bam SAMstats-subbam_merge-BPTF -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-BRF2.merged.sorted.bam SAMstats-subbam_merge-BRF2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CAMTA1.merged.sorted.bam SAMstats-subbam_merge-CAMTA1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CDC5L.merged.sorted.bam SAMstats-subbam_merge-CDC5L -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CEBPG.merged.sorted.bam SAMstats-subbam_merge-CEBPG -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CEBPZ.merged.sorted.bam SAMstats-subbam_merge-CEBPZ -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CENPA.merged.sorted.bam SAMstats-subbam_merge-CENPA -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CENPBD1.merged.sorted.bam SAMstats-subbam_merge-CENPBD1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CENPS.merged.sorted.bam SAMstats-subbam_merge-CENPS -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CENPT.merged.sorted.bam SAMstats-subbam_merge-CENPT -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CENPX.merged.sorted.bam SAMstats-subbam_merge-CENPX -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CGGBP1.merged.sorted.bam SAMstats-subbam_merge-CGGBP1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CHAMP1.merged.sorted.bam SAMstats-subbam_merge-CHAMP1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CHCHD3.merged.sorted.bam SAMstats-subbam_merge-CHCHD3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CREB1.merged.sorted.bam SAMstats-subbam_merge-CREB1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CREB3L2.merged.sorted.bam SAMstats-subbam_merge-CREB3L2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CREB3L4.merged.sorted.bam SAMstats-subbam_merge-CREB3L4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CREBZF.merged.sorted.bam SAMstats-subbam_merge-CREBZF -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CREM.merged.sorted.bam SAMstats-subbam_merge-CREM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CSRNP1.merged.sorted.bam SAMstats-subbam_merge-CSRNP1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CTCFL.merged.sorted.bam SAMstats-subbam_merge-CTCFL -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CTCF.merged.sorted.bam SAMstats-subbam_merge-CTCF -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CXXC1.merged.sorted.bam SAMstats-subbam_merge-CXXC1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-CXXC5.merged.sorted.bam SAMstats-subbam_merge-CXXC5 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-DDIT3.merged.sorted.bam SAMstats-subbam_merge-DDIT3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-DEAF1.merged.sorted.bam SAMstats-subbam_merge-DEAF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-DMTF1.merged.sorted.bam SAMstats-subbam_merge-DMTF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-DNMT1.merged.sorted.bam SAMstats-subbam_merge-DNMT1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-DNTTIP1.merged.sorted.bam SAMstats-subbam_merge-DNTTIP1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-DR1.merged.sorted.bam SAMstats-subbam_merge-DR1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-DRAP1.merged.sorted.bam SAMstats-subbam_merge-DRAP1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-E2F3.merged.sorted.bam SAMstats-subbam_merge-E2F3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-E2F4.merged.sorted.bam SAMstats-subbam_merge-E2F4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-E2F5.merged.sorted.bam SAMstats-subbam_merge-E2F5 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-E2F6.merged.sorted.bam SAMstats-subbam_merge-E2F6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-E4F1.merged.sorted.bam SAMstats-subbam_merge-E4F1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ELF1.merged.sorted.bam SAMstats-subbam_merge-ELF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ELF2.merged.sorted.bam SAMstats-subbam_merge-ELF2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ELF4.merged.sorted.bam SAMstats-subbam_merge-ELF4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ELK1.merged.sorted.bam SAMstats-subbam_merge-ELK1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ERF.merged.sorted.bam SAMstats-subbam_merge-ERF -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ESRRA.merged.sorted.bam SAMstats-subbam_merge-ESRRA -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ESRRB.merged.sorted.bam SAMstats-subbam_merge-ESRRB -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ETV1.merged.sorted.bam SAMstats-subbam_merge-ETV1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ETV4.merged.sorted.bam SAMstats-subbam_merge-ETV4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ETV5.merged.sorted.bam SAMstats-subbam_merge-ETV5 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-FAM200B.merged.sorted.bam SAMstats-subbam_merge-FAM200B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-FOXA3.merged.sorted.bam SAMstats-subbam_merge-FOXA3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-FOXJ3.merged.sorted.bam SAMstats-subbam_merge-FOXJ3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-FOXK2.merged.sorted.bam SAMstats-subbam_merge-FOXK2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-FOXN2.merged.sorted.bam SAMstats-subbam_merge-FOXN2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-GABPA.merged.sorted.bam SAMstats-subbam_merge-GABPA -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-GATA1.merged.sorted.bam SAMstats-subbam_merge-GATA1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-GATA2.merged.sorted.bam SAMstats-subbam_merge-GATA2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-GATAD2A.merged.sorted.bam SAMstats-subbam_merge-GATAD2A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-GFI1B.merged.sorted.bam SAMstats-subbam_merge-GFI1B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-GLYR1.merged.sorted.bam SAMstats-subbam_merge-GLYR1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-GPBP1L1.merged.sorted.bam SAMstats-subbam_merge-GPBP1L1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-GPBP1.merged.sorted.bam SAMstats-subbam_merge-GPBP1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-GTF2B.merged.sorted.bam SAMstats-subbam_merge-GTF2B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-GTF2I.merged.sorted.bam SAMstats-subbam_merge-GTF2I -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-GTF3A.merged.sorted.bam SAMstats-subbam_merge-GTF3A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-GZF1.merged.sorted.bam SAMstats-subbam_merge-GZF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HBP1.merged.sorted.bam SAMstats-subbam_merge-HBP1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HES6.merged.sorted.bam SAMstats-subbam_merge-HES6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HHEX.merged.sorted.bam SAMstats-subbam_merge-HHEX -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HIC2.merged.sorted.bam SAMstats-subbam_merge-HIC2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HIF1A.merged.sorted.bam SAMstats-subbam_merge-HIF1A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HINFP.merged.sorted.bam SAMstats-subbam_merge-HINFP -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HIVEP1.merged.sorted.bam SAMstats-subbam_merge-HIVEP1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HMBOX1.merged.sorted.bam SAMstats-subbam_merge-HMBOX1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HMG20A.merged.sorted.bam SAMstats-subbam_merge-HMG20A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HMG20B.merged.sorted.bam SAMstats-subbam_merge-HMG20B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HMGA1.merged.sorted.bam SAMstats-subbam_merge-HMGA1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HMGN3.merged.sorted.bam SAMstats-subbam_merge-HMGN3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HOMEZ.merged.sorted.bam SAMstats-subbam_merge-HOMEZ -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HOXB2.merged.sorted.bam SAMstats-subbam_merge-HOXB2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HOXB3.merged.sorted.bam SAMstats-subbam_merge-HOXB3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HOXB9.merged.sorted.bam SAMstats-subbam_merge-HOXB9 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HSF1.merged.sorted.bam SAMstats-subbam_merge-HSF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-HSF2.merged.sorted.bam SAMstats-subbam_merge-HSF2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-IKZF1.merged.sorted.bam SAMstats-subbam_merge-IKZF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-IRF3.merged.sorted.bam SAMstats-subbam_merge-IRF3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-IRF9.merged.sorted.bam SAMstats-subbam_merge-IRF9 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-JRKL.merged.sorted.bam SAMstats-subbam_merge-JRKL -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-JUNB.merged.sorted.bam SAMstats-subbam_merge-JUNB -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-JUND.merged.sorted.bam SAMstats-subbam_merge-JUND -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-KAT7.merged.sorted.bam SAMstats-subbam_merge-KAT7 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-KCMF1.merged.sorted.bam SAMstats-subbam_merge-KCMF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-KDM2A.merged.sorted.bam SAMstats-subbam_merge-KDM2A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-KDM2B.merged.sorted.bam SAMstats-subbam_merge-KDM2B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-KDM5B.merged.sorted.bam SAMstats-subbam_merge-KDM5B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-KLF1.merged.sorted.bam SAMstats-subbam_merge-KLF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-KLF3.merged.sorted.bam SAMstats-subbam_merge-KLF3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-KMT2A.merged.sorted.bam SAMstats-subbam_merge-KMT2A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-LCORL.merged.sorted.bam SAMstats-subbam_merge-LCORL -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-LEF1.merged.sorted.bam SAMstats-subbam_merge-LEF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-LIN28B.merged.sorted.bam SAMstats-subbam_merge-LIN28B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-LIN54.merged.sorted.bam SAMstats-subbam_merge-LIN54 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-LYL1.merged.sorted.bam SAMstats-subbam_merge-LYL1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MAFG.merged.sorted.bam SAMstats-subbam_merge-MAFG -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MAX.merged.sorted.bam SAMstats-subbam_merge-MAX -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MAZ.merged.sorted.bam SAMstats-subbam_merge-MAZ -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MBD1.merged.sorted.bam SAMstats-subbam_merge-MBD1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MBD2.merged.sorted.bam SAMstats-subbam_merge-MBD2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MBD3.merged.sorted.bam SAMstats-subbam_merge-MBD3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MBD4.merged.sorted.bam SAMstats-subbam_merge-MBD4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MBNL2.merged.sorted.bam SAMstats-subbam_merge-MBNL2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MECOM.merged.sorted.bam SAMstats-subbam_merge-MECOM -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MECP2.merged.sorted.bam SAMstats-subbam_merge-MECP2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MEF2C.merged.sorted.bam SAMstats-subbam_merge-MEF2C -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MEIS2.merged.sorted.bam SAMstats-subbam_merge-MEIS2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MGA.merged.sorted.bam SAMstats-subbam_merge-MGA -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MLXIP.merged.sorted.bam SAMstats-subbam_merge-MLXIP -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MLX.merged.sorted.bam SAMstats-subbam_merge-MLX -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MSANTD3.merged.sorted.bam SAMstats-subbam_merge-MSANTD3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MTERF1.merged.sorted.bam SAMstats-subbam_merge-MTERF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MTERF2.merged.sorted.bam SAMstats-subbam_merge-MTERF2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MTERF3.merged.sorted.bam SAMstats-subbam_merge-MTERF3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MTERF4.merged.sorted.bam SAMstats-subbam_merge-MTERF4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MTF2.merged.sorted.bam SAMstats-subbam_merge-MTF2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MXD1.merged.sorted.bam SAMstats-subbam_merge-MXD1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MXI1.merged.sorted.bam SAMstats-subbam_merge-MXI1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MYBL2.merged.sorted.bam SAMstats-subbam_merge-MYBL2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MYB.merged.sorted.bam SAMstats-subbam_merge-MYB -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MYC.merged.sorted.bam SAMstats-subbam_merge-MYC -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MYNN.merged.sorted.bam SAMstats-subbam_merge-MYNN -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MYSM1.merged.sorted.bam SAMstats-subbam_merge-MYSM1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-MZF1.merged.sorted.bam SAMstats-subbam_merge-MZF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NAIF1.merged.sorted.bam SAMstats-subbam_merge-NAIF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NCOA1.merged.sorted.bam SAMstats-subbam_merge-NCOA1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NCOA3.merged.sorted.bam SAMstats-subbam_merge-NCOA3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NFAT5.merged.sorted.bam SAMstats-subbam_merge-NFAT5 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NFATC3.merged.sorted.bam SAMstats-subbam_merge-NFATC3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NFE2L1.merged.sorted.bam SAMstats-subbam_merge-NFE2L1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NFE2L2.merged.sorted.bam SAMstats-subbam_merge-NFE2L2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NFE2.merged.sorted.bam SAMstats-subbam_merge-NFE2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NFE4.merged.sorted.bam SAMstats-subbam_merge-NFE4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NFX1.merged.sorted.bam SAMstats-subbam_merge-NFX1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NFXL1.merged.sorted.bam SAMstats-subbam_merge-NFXL1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NFYA.merged.sorted.bam SAMstats-subbam_merge-NFYA -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NFYB.merged.sorted.bam SAMstats-subbam_merge-NFYB -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NFYC.merged.sorted.bam SAMstats-subbam_merge-NFYC -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NKRF.merged.sorted.bam SAMstats-subbam_merge-NKRF -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NME2.merged.sorted.bam SAMstats-subbam_merge-NME2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NR1H2.merged.sorted.bam SAMstats-subbam_merge-NR1H2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NR1H3.merged.sorted.bam SAMstats-subbam_merge-NR1H3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NR2C1.merged.sorted.bam SAMstats-subbam_merge-NR2C1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NR2C2.merged.sorted.bam SAMstats-subbam_merge-NR2C2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NR2F6.merged.sorted.bam SAMstats-subbam_merge-NR2F6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NR3C1.merged.sorted.bam SAMstats-subbam_merge-NR3C1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NR6A1.merged.sorted.bam SAMstats-subbam_merge-NR6A1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-NRF1.merged.sorted.bam SAMstats-subbam_merge-NRF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-PA2G4.merged.sorted.bam SAMstats-subbam_merge-PA2G4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-PBX2.merged.sorted.bam SAMstats-subbam_merge-PBX2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-PCGF6.merged.sorted.bam SAMstats-subbam_merge-PCGF6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-PHF19.merged.sorted.bam SAMstats-subbam_merge-PHF19 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-PHF1.merged.sorted.bam SAMstats-subbam_merge-PHF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-PHF20.merged.sorted.bam SAMstats-subbam_merge-PHF20 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-PIN1.merged.sorted.bam SAMstats-subbam_merge-PIN1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-PITX1.merged.sorted.bam SAMstats-subbam_merge-PITX1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-PKNOX1.merged.sorted.bam SAMstats-subbam_merge-PKNOX1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-PLAGL1.merged.sorted.bam SAMstats-subbam_merge-PLAGL1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-PLSCR1.merged.sorted.bam SAMstats-subbam_merge-PLSCR1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-PRDM4.merged.sorted.bam SAMstats-subbam_merge-PRDM4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-PREB.merged.sorted.bam SAMstats-subbam_merge-PREB -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-PRMT3.merged.sorted.bam SAMstats-subbam_merge-PRMT3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-RBCK1.merged.sorted.bam SAMstats-subbam_merge-RBCK1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-RBPJ.merged.sorted.bam SAMstats-subbam_merge-RBPJ -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-RBSN.merged.sorted.bam SAMstats-subbam_merge-RBSN -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-RELA.merged.sorted.bam SAMstats-subbam_merge-RELA -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-REPIN1.merged.sorted.bam SAMstats-subbam_merge-REPIN1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-REST.merged.sorted.bam SAMstats-subbam_merge-REST -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-REXO4.merged.sorted.bam SAMstats-subbam_merge-REXO4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-RFX5.merged.sorted.bam SAMstats-subbam_merge-RFX5 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-RHOXF2.merged.sorted.bam SAMstats-subbam_merge-RHOXF2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-RLF.merged.sorted.bam SAMstats-subbam_merge-RLF -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-RUNX1.merged.sorted.bam SAMstats-subbam_merge-RUNX1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-RXRB.merged.sorted.bam SAMstats-subbam_merge-RXRB -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SAFB2.merged.sorted.bam SAMstats-subbam_merge-SAFB2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SAFB.merged.sorted.bam SAMstats-subbam_merge-SAFB -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SCMH1.merged.sorted.bam SAMstats-subbam_merge-SCMH1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SETDB1.merged.sorted.bam SAMstats-subbam_merge-SETDB1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SGSM2.merged.sorted.bam SAMstats-subbam_merge-SGSM2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SLC2A4RG.merged.sorted.bam SAMstats-subbam_merge-SLC2A4RG -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SMAD3.merged.sorted.bam SAMstats-subbam_merge-SMAD3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SMAD4.merged.sorted.bam SAMstats-subbam_merge-SMAD4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SMAD5.merged.sorted.bam SAMstats-subbam_merge-SMAD5 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SMYD3.merged.sorted.bam SAMstats-subbam_merge-SMYD3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SNAPC5.merged.sorted.bam SAMstats-subbam_merge-SNAPC5 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SOHLH2.merged.sorted.bam SAMstats-subbam_merge-SOHLH2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SON.merged.sorted.bam SAMstats-subbam_merge-SON -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SOX5.merged.sorted.bam SAMstats-subbam_merge-SOX5 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SP100.merged.sorted.bam SAMstats-subbam_merge-SP100 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SP1.merged.sorted.bam SAMstats-subbam_merge-SP1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SP3.merged.sorted.bam SAMstats-subbam_merge-SP3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SREBF1.merged.sorted.bam SAMstats-subbam_merge-SREBF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SREBF2.merged.sorted.bam SAMstats-subbam_merge-SREBF2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-SRF.merged.sorted.bam SAMstats-subbam_merge-SRF -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-STAT1.merged.sorted.bam SAMstats-subbam_merge-STAT1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-STAT2.merged.sorted.bam SAMstats-subbam_merge-STAT2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-STAT3.merged.sorted.bam SAMstats-subbam_merge-STAT3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-STAT5A.merged.sorted.bam SAMstats-subbam_merge-STAT5A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-STAT5B.merged.sorted.bam SAMstats-subbam_merge-STAT5B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-STAT6.merged.sorted.bam SAMstats-subbam_merge-STAT6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TAL1.merged.sorted.bam SAMstats-subbam_merge-TAL1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TBPL1.merged.sorted.bam SAMstats-subbam_merge-TBPL1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TBP.merged.sorted.bam SAMstats-subbam_merge-TBP -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TBX18.merged.sorted.bam SAMstats-subbam_merge-TBX18 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TCF12.merged.sorted.bam SAMstats-subbam_merge-TCF12 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TCF3.merged.sorted.bam SAMstats-subbam_merge-TCF3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TCF4.merged.sorted.bam SAMstats-subbam_merge-TCF4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TEAD4.merged.sorted.bam SAMstats-subbam_merge-TEAD4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TERF1.merged.sorted.bam SAMstats-subbam_merge-TERF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TERF2.merged.sorted.bam SAMstats-subbam_merge-TERF2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TFCP2.merged.sorted.bam SAMstats-subbam_merge-TFCP2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TFDP1.merged.sorted.bam SAMstats-subbam_merge-TFDP1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TFDP2.merged.sorted.bam SAMstats-subbam_merge-TFDP2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TGIF1.merged.sorted.bam SAMstats-subbam_merge-TGIF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TGIF2.merged.sorted.bam SAMstats-subbam_merge-TGIF2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-THAP11.merged.sorted.bam SAMstats-subbam_merge-THAP11 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-THAP12.merged.sorted.bam SAMstats-subbam_merge-THAP12 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-THAP4.merged.sorted.bam SAMstats-subbam_merge-THAP4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-THAP5.merged.sorted.bam SAMstats-subbam_merge-THAP5 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-THAP6.merged.sorted.bam SAMstats-subbam_merge-THAP6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-THAP7.merged.sorted.bam SAMstats-subbam_merge-THAP7 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-THRB.merged.sorted.bam SAMstats-subbam_merge-THRB -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-THYN1.merged.sorted.bam SAMstats-subbam_merge-THYN1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TP53.merged.sorted.bam SAMstats-subbam_merge-TP53 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TRAFD1.merged.sorted.bam SAMstats-subbam_merge-TRAFD1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TSC22D1.merged.sorted.bam SAMstats-subbam_merge-TSC22D1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-TTF1.merged.sorted.bam SAMstats-subbam_merge-TTF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-UBP1.merged.sorted.bam SAMstats-subbam_merge-UBP1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-USF1.merged.sorted.bam SAMstats-subbam_merge-USF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-USF2.merged.sorted.bam SAMstats-subbam_merge-USF2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-VEZF1.merged.sorted.bam SAMstats-subbam_merge-VEZF1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-WT1.merged.sorted.bam SAMstats-subbam_merge-WT1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-XBP1.merged.sorted.bam SAMstats-subbam_merge-XBP1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-YBX1.merged.sorted.bam SAMstats-subbam_merge-YBX1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-YBX3.merged.sorted.bam SAMstats-subbam_merge-YBX3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-YY1.merged.sorted.bam SAMstats-subbam_merge-YY1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZBED5.merged.sorted.bam SAMstats-subbam_merge-ZBED5 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZBED9.merged.sorted.bam SAMstats-subbam_merge-ZBED9 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZBTB11.merged.sorted.bam SAMstats-subbam_merge-ZBTB11 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZBTB17.merged.sorted.bam SAMstats-subbam_merge-ZBTB17 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZBTB1.merged.sorted.bam SAMstats-subbam_merge-ZBTB1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZBTB26.merged.sorted.bam SAMstats-subbam_merge-ZBTB26 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZBTB2.merged.sorted.bam SAMstats-subbam_merge-ZBTB2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZBTB33.merged.sorted.bam SAMstats-subbam_merge-ZBTB33 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZBTB34.merged.sorted.bam SAMstats-subbam_merge-ZBTB34 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZBTB38.merged.sorted.bam SAMstats-subbam_merge-ZBTB38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZBTB44.merged.sorted.bam SAMstats-subbam_merge-ZBTB44 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZBTB48.merged.sorted.bam SAMstats-subbam_merge-ZBTB48 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZBTB5.merged.sorted.bam SAMstats-subbam_merge-ZBTB5 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZBTB7B.merged.sorted.bam SAMstats-subbam_merge-ZBTB7B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZEB2.merged.sorted.bam SAMstats-subbam_merge-ZEB2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZFP62.merged.sorted.bam SAMstats-subbam_merge-ZFP62 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZFP91.merged.sorted.bam SAMstats-subbam_merge-ZFP91 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZHX1.merged.sorted.bam SAMstats-subbam_merge-ZHX1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZKSCAN1.merged.sorted.bam SAMstats-subbam_merge-ZKSCAN1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZKSCAN5.merged.sorted.bam SAMstats-subbam_merge-ZKSCAN5 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZKSCAN8.merged.sorted.bam SAMstats-subbam_merge-ZKSCAN8 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF100.merged.sorted.bam SAMstats-subbam_merge-ZNF100 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF101.merged.sorted.bam SAMstats-subbam_merge-ZNF101 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF117.merged.sorted.bam SAMstats-subbam_merge-ZNF117 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF121.merged.sorted.bam SAMstats-subbam_merge-ZNF121 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF124.merged.sorted.bam SAMstats-subbam_merge-ZNF124 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF12.merged.sorted.bam SAMstats-subbam_merge-ZNF12 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF131.merged.sorted.bam SAMstats-subbam_merge-ZNF131 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF138.merged.sorted.bam SAMstats-subbam_merge-ZNF138 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF143.merged.sorted.bam SAMstats-subbam_merge-ZNF143 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF146.merged.sorted.bam SAMstats-subbam_merge-ZNF146 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF160.merged.sorted.bam SAMstats-subbam_merge-ZNF160 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF169.merged.sorted.bam SAMstats-subbam_merge-ZNF169 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF175.merged.sorted.bam SAMstats-subbam_merge-ZNF175 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF181.merged.sorted.bam SAMstats-subbam_merge-ZNF181 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF195.merged.sorted.bam SAMstats-subbam_merge-ZNF195 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF202.merged.sorted.bam SAMstats-subbam_merge-ZNF202 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF207.merged.sorted.bam SAMstats-subbam_merge-ZNF207 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF215.merged.sorted.bam SAMstats-subbam_merge-ZNF215 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF224.merged.sorted.bam SAMstats-subbam_merge-ZNF224 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF22.merged.sorted.bam SAMstats-subbam_merge-ZNF22 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF239.merged.sorted.bam SAMstats-subbam_merge-ZNF239 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF24.merged.sorted.bam SAMstats-subbam_merge-ZNF24 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF254.merged.sorted.bam SAMstats-subbam_merge-ZNF254 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF266.merged.sorted.bam SAMstats-subbam_merge-ZNF266 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF267.merged.sorted.bam SAMstats-subbam_merge-ZNF267 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF273.merged.sorted.bam SAMstats-subbam_merge-ZNF273 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF274.merged.sorted.bam SAMstats-subbam_merge-ZNF274 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF275.merged.sorted.bam SAMstats-subbam_merge-ZNF275 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF276.merged.sorted.bam SAMstats-subbam_merge-ZNF276 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF277.merged.sorted.bam SAMstats-subbam_merge-ZNF277 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF280A.merged.sorted.bam SAMstats-subbam_merge-ZNF280A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF280B.merged.sorted.bam SAMstats-subbam_merge-ZNF280B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF280D.merged.sorted.bam SAMstats-subbam_merge-ZNF280D -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF28.merged.sorted.bam SAMstats-subbam_merge-ZNF28 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF292.merged.sorted.bam SAMstats-subbam_merge-ZNF292 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF317.merged.sorted.bam SAMstats-subbam_merge-ZNF317 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF318.merged.sorted.bam SAMstats-subbam_merge-ZNF318 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF320.merged.sorted.bam SAMstats-subbam_merge-ZNF320 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF322.merged.sorted.bam SAMstats-subbam_merge-ZNF322 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF326.merged.sorted.bam SAMstats-subbam_merge-ZNF326 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF32.merged.sorted.bam SAMstats-subbam_merge-ZNF32 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF33A.merged.sorted.bam SAMstats-subbam_merge-ZNF33A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF33B.merged.sorted.bam SAMstats-subbam_merge-ZNF33B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF346.merged.sorted.bam SAMstats-subbam_merge-ZNF346 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF354B.merged.sorted.bam SAMstats-subbam_merge-ZNF354B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF37A.merged.sorted.bam SAMstats-subbam_merge-ZNF37A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF384.merged.sorted.bam SAMstats-subbam_merge-ZNF384 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF394.merged.sorted.bam SAMstats-subbam_merge-ZNF394 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF397.merged.sorted.bam SAMstats-subbam_merge-ZNF397 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF3.merged.sorted.bam SAMstats-subbam_merge-ZNF3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF410.merged.sorted.bam SAMstats-subbam_merge-ZNF410 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF428.merged.sorted.bam SAMstats-subbam_merge-ZNF428 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF431.merged.sorted.bam SAMstats-subbam_merge-ZNF431 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF440.merged.sorted.bam SAMstats-subbam_merge-ZNF440 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF451.merged.sorted.bam SAMstats-subbam_merge-ZNF451 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF460.merged.sorted.bam SAMstats-subbam_merge-ZNF460 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF468.merged.sorted.bam SAMstats-subbam_merge-ZNF468 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF473.merged.sorted.bam SAMstats-subbam_merge-ZNF473 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF480.merged.sorted.bam SAMstats-subbam_merge-ZNF480 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF493.merged.sorted.bam SAMstats-subbam_merge-ZNF493 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF496.merged.sorted.bam SAMstats-subbam_merge-ZNF496 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF507.merged.sorted.bam SAMstats-subbam_merge-ZNF507 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF510.merged.sorted.bam SAMstats-subbam_merge-ZNF510 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF511.merged.sorted.bam SAMstats-subbam_merge-ZNF511 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF512.merged.sorted.bam SAMstats-subbam_merge-ZNF512 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF514.merged.sorted.bam SAMstats-subbam_merge-ZNF514 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF518A.merged.sorted.bam SAMstats-subbam_merge-ZNF518A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF518B.merged.sorted.bam SAMstats-subbam_merge-ZNF518B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF519.merged.sorted.bam SAMstats-subbam_merge-ZNF519 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF544.merged.sorted.bam SAMstats-subbam_merge-ZNF544 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF558.merged.sorted.bam SAMstats-subbam_merge-ZNF558 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF559.merged.sorted.bam SAMstats-subbam_merge-ZNF559 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF561.merged.sorted.bam SAMstats-subbam_merge-ZNF561 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF562.merged.sorted.bam SAMstats-subbam_merge-ZNF562 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF581.merged.sorted.bam SAMstats-subbam_merge-ZNF581 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF584.merged.sorted.bam SAMstats-subbam_merge-ZNF584 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF587B.merged.sorted.bam SAMstats-subbam_merge-ZNF587B -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF587.merged.sorted.bam SAMstats-subbam_merge-ZNF587 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF589.merged.sorted.bam SAMstats-subbam_merge-ZNF589 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF595.merged.sorted.bam SAMstats-subbam_merge-ZNF595 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF598.merged.sorted.bam SAMstats-subbam_merge-ZNF598 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF600.merged.sorted.bam SAMstats-subbam_merge-ZNF600 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF609.merged.sorted.bam SAMstats-subbam_merge-ZNF609 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF621.merged.sorted.bam SAMstats-subbam_merge-ZNF621 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF627.merged.sorted.bam SAMstats-subbam_merge-ZNF627 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF639.merged.sorted.bam SAMstats-subbam_merge-ZNF639 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF644.merged.sorted.bam SAMstats-subbam_merge-ZNF644 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF655.merged.sorted.bam SAMstats-subbam_merge-ZNF655 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF664.merged.sorted.bam SAMstats-subbam_merge-ZNF664 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF672.merged.sorted.bam SAMstats-subbam_merge-ZNF672 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF675.merged.sorted.bam SAMstats-subbam_merge-ZNF675 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF692.merged.sorted.bam SAMstats-subbam_merge-ZNF692 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF700.merged.sorted.bam SAMstats-subbam_merge-ZNF700 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF701.merged.sorted.bam SAMstats-subbam_merge-ZNF701 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF706.merged.sorted.bam SAMstats-subbam_merge-ZNF706 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF714.merged.sorted.bam SAMstats-subbam_merge-ZNF714 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF717.merged.sorted.bam SAMstats-subbam_merge-ZNF717 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF721.merged.sorted.bam SAMstats-subbam_merge-ZNF721 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF726.merged.sorted.bam SAMstats-subbam_merge-ZNF726 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF740.merged.sorted.bam SAMstats-subbam_merge-ZNF740 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF749.merged.sorted.bam SAMstats-subbam_merge-ZNF749 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF74.merged.sorted.bam SAMstats-subbam_merge-ZNF74 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF75A.merged.sorted.bam SAMstats-subbam_merge-ZNF75A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF761.merged.sorted.bam SAMstats-subbam_merge-ZNF761 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF766.merged.sorted.bam SAMstats-subbam_merge-ZNF766 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF768.merged.sorted.bam SAMstats-subbam_merge-ZNF768 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF76.merged.sorted.bam SAMstats-subbam_merge-ZNF76 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF770.merged.sorted.bam SAMstats-subbam_merge-ZNF770 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF776.merged.sorted.bam SAMstats-subbam_merge-ZNF776 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF77.merged.sorted.bam SAMstats-subbam_merge-ZNF77 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF780A.merged.sorted.bam SAMstats-subbam_merge-ZNF780A -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF789.merged.sorted.bam SAMstats-subbam_merge-ZNF789 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF791.merged.sorted.bam SAMstats-subbam_merge-ZNF791 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF7.merged.sorted.bam SAMstats-subbam_merge-ZNF7 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF800.merged.sorted.bam SAMstats-subbam_merge-ZNF800 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF808.merged.sorted.bam SAMstats-subbam_merge-ZNF808 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF816.merged.sorted.bam SAMstats-subbam_merge-ZNF816 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF830.merged.sorted.bam SAMstats-subbam_merge-ZNF830 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF83.merged.sorted.bam SAMstats-subbam_merge-ZNF83 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF84.merged.sorted.bam SAMstats-subbam_merge-ZNF84 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZNF852.merged.sorted.bam SAMstats-subbam_merge-ZNF852 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZSCAN12.merged.sorted.bam SAMstats-subbam_merge-ZSCAN12 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZSCAN25.merged.sorted.bam SAMstats-subbam_merge-ZSCAN25 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZSCAN26.merged.sorted.bam SAMstats-subbam_merge-ZSCAN26 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZSCAN32.merged.sorted.bam SAMstats-subbam_merge-ZSCAN32 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZSCAN9.merged.sorted.bam SAMstats-subbam_merge-ZSCAN9 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py subbam_merge-ZZZ3.merged.sorted.bam SAMstats-subbam_merge-ZZZ3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired -uniqueBAM &