zcat SL41_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL41_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.nan_counts
zcat SL43_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL43_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.nan_counts
zcat SL44_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL44_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.nan_counts
zcat SL45_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL45_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.nan_counts
zcat SL46_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL46_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.nan_counts
zcat SL48_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.end1.fastq.gz | grep nan | wc -l > SL48_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.nan_counts
zcat SL57_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz | grep nan | wc -l > SL57_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.nan_counts
zcat SL59_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz | grep nan | wc -l > SL59_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.nan_counts
zcat SL60_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz | grep nan | wc -l > SL60_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.nan_counts
zcat SL61_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz | grep nan | wc -l > SL61_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.nan_counts
zcat SL62_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz | grep nan | wc -l > SL62_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.nan_counts
zcat SL64_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz | grep nan | wc -l > SL64_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.nan_counts
zcat SL41_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL41_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.fastq.lines
zcat SL43_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL43_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.fastq.lines
zcat SL44_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL44_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.fastq.lines
zcat SL45_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL45_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.fastq.lines
zcat SL46_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL46_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.fastq.lines
zcat SL48_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.end1.fastq.gz | wc -l > SL48_b4_ATAC_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.fastq.lines
zcat SL57_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz | wc -l > SL57_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.fastq.lines
zcat SL59_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz | wc -l > SL59_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.fastq.lines
zcat SL60_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz | wc -l > SL60_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.fastq.lines
zcat SL61_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz | wc -l > SL61_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.fastq.lines
zcat SL62_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz | wc -l > SL62_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.fastq.lines
zcat SL64_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz | wc -l > SL64_b4_RNA_brain.230512_A00509_0731_BH7YYVDSX7.barcodes_annotated.RNA_UMI.fastq.lines
zcat SL41_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz | wc -l > SL41_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.fastq.lines
zcat SL43_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz | wc -l > SL43_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.fastq.lines
zcat SL44_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz | wc -l > SL44_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.fastq.lines
zcat SL45_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz | wc -l > SL45_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.fastq.lines
zcat SL46_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz | wc -l > SL46_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.fastq.lines
zcat SL48_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz | wc -l > SL48_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.fastq.lines
zcat SL57_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz | wc -l > SL57_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.fastq.lines
zcat SL59_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz | wc -l > SL59_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.fastq.lines
zcat SL60_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz | wc -l > SL60_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.fastq.lines
zcat SL61_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz | wc -l > SL61_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.fastq.lines
zcat SL62_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz | wc -l > SL62_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.fastq.lines
zcat SL64_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz | wc -l > SL64_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.fastq.lines
zcat SL41_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz | wc -l > SL41_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.fastq.lines
zcat SL43_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz | wc -l > SL43_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.fastq.lines
zcat SL44_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz | wc -l > SL44_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.fastq.lines
zcat SL45_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz | wc -l > SL45_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.fastq.lines
zcat SL46_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz | wc -l > SL46_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.fastq.lines
zcat SL48_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz | wc -l > SL48_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.fastq.lines
zcat SL57_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL57_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.fastq.lines
zcat SL59_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL59_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.fastq.lines
zcat SL60_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL60_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.fastq.lines
zcat SL61_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL61_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.fastq.lines
zcat SL62_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL62_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.fastq.lines
zcat SL64_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz | wc -l > SL64_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.fastq.lines
zcat SL41_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz | wc -l > SL41_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.fastq.lines
zcat SL43_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz | wc -l > SL43_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.fastq.lines
zcat SL44_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz | wc -l > SL44_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.fastq.lines
zcat SL45_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz | wc -l > SL45_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.fastq.lines
zcat SL46_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz | wc -l > SL46_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.fastq.lines
zcat SL48_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz | wc -l > SL48_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.fastq.lines
zcat SL57_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz | wc -l > SL57_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.fastq.lines
zcat SL59_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz | wc -l > SL59_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.fastq.lines
zcat SL60_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz | wc -l > SL60_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.fastq.lines
zcat SL61_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz | wc -l > SL61_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.fastq.lines
zcat SL62_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz | wc -l > SL62_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.fastq.lines
zcat SL64_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz | wc -l > SL64_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.fastq.lines
zcat SL41_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz | wc -l > SL41_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.fastq.lines
zcat SL43_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz | wc -l > SL43_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.fastq.lines
zcat SL44_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz | wc -l > SL44_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.fastq.lines
zcat SL45_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz | wc -l > SL45_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.fastq.lines
zcat SL46_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz | wc -l > SL46_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.fastq.lines
zcat SL48_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz | wc -l > SL48_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.fastq.lines
zcat SL57_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL57_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.fastq.lines
zcat SL59_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL59_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.fastq.lines
zcat SL60_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL60_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.fastq.lines
zcat SL61_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL61_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.fastq.lines
zcat SL62_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL62_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.fastq.lines
zcat SL64_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL64_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.fastq.lines
zcat SL41_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz | wc -l > SL41_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.fastq.lines
zcat SL43_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz | wc -l > SL43_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.fastq.lines
zcat SL44_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz | wc -l > SL44_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.fastq.lines
zcat SL45_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz | wc -l > SL45_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.fastq.lines
zcat SL46_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz | wc -l > SL46_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.fastq.lines
zcat SL48_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz | wc -l > SL48_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.fastq.lines
zcat SL57_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz | wc -l > SL57_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.fastq.lines
zcat SL59_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz | wc -l > SL59_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.fastq.lines
zcat SL60_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz | wc -l > SL60_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.fastq.lines
zcat SL61_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz | wc -l > SL61_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.fastq.lines
zcat SL62_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz | wc -l > SL62_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.fastq.lines
zcat SL64_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz | wc -l > SL64_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.fastq.lines
zcat SL41_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz | wc -l > SL41_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.fastq.lines
zcat SL43_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz | wc -l > SL43_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.fastq.lines
zcat SL44_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz | wc -l > SL44_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.fastq.lines
zcat SL45_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz | wc -l > SL45_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.fastq.lines
zcat SL46_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz | wc -l > SL46_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.fastq.lines
zcat SL48_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz | wc -l > SL48_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.fastq.lines
zcat SL57_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz | wc -l > SL57_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.fastq.lines
zcat SL59_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz | wc -l > SL59_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.fastq.lines
zcat SL60_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz | wc -l > SL60_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.fastq.lines
zcat SL61_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz | wc -l > SL61_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.fastq.lines
zcat SL62_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz | wc -l > SL62_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.fastq.lines
zcat SL64_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz | wc -l > SL64_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.fastq.lines
zcat SL41_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz | wc -l > SL41_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.fastq.lines
zcat SL43_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz | wc -l > SL43_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.fastq.lines
zcat SL44_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz | wc -l > SL44_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.fastq.lines
zcat SL45_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz | wc -l > SL45_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.fastq.lines
zcat SL46_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz | wc -l > SL46_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.fastq.lines
zcat SL48_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz | wc -l > SL48_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.fastq.lines
zcat SL57_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL57_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.fastq.lines
zcat SL59_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL59_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.fastq.lines
zcat SL60_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL60_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.fastq.lines
zcat SL61_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL61_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.fastq.lines
zcat SL62_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL62_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.fastq.lines
zcat SL64_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz | wc -l > SL64_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.fastq.lines
zcat SL41_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz | wc -l > SL41_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.fastq.lines
zcat SL43_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz | wc -l > SL43_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.fastq.lines
zcat SL44_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz | wc -l > SL44_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.fastq.lines
zcat SL45_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz | wc -l > SL45_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.fastq.lines
zcat SL46_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz | wc -l > SL46_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.fastq.lines
zcat SL48_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz | wc -l > SL48_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.fastq.lines
zcat SL57_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz | wc -l > SL57_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.fastq.lines
zcat SL59_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz | wc -l > SL59_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.fastq.lines
zcat SL60_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz | wc -l > SL60_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.fastq.lines
zcat SL61_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz | wc -l > SL61_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.fastq.lines
zcat SL62_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz | wc -l > SL62_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.fastq.lines
zcat SL64_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz | wc -l > SL64_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.fastq.lines