python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL57_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL57_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL57_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL59_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL59_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL59_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL60_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL60_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL60_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL61_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL61_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL61_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL62_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL62_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL62_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL64_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL64_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL64_b4_RNA_brain.T155_b4_Brain_PCW10.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL57_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL57_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL57_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL59_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL59_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL59_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL60_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL60_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL60_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL61_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL61_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL61_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL62_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL62_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL62_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL64_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL64_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL64_b4_RNA_brain.T183_b4_Brain_PCW19.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL57_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL57_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL57_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL59_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL59_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL59_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL60_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL60_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL60_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL61_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL61_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL61_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL62_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL62_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL62_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL64_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL64_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL64_b4_RNA_brain.T382_b4_Brain_PCW15.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL57_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL57_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL57_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL59_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL59_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL59_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL60_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL60_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL60_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL61_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL61_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL61_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL62_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL62_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL62_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL64_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL64_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL64_b4_RNA_brain.T47_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL57_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL57_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL57_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL59_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL59_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL59_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL60_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL60_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL60_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL61_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL61_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL61_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL62_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL62_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL62_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL64_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL64_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL64_b4_RNA_brain.T63_b4_Brain_PCW20.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL57_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL57_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL57_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL59_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL59_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL59_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL60_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL60_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL60_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL61_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL61_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL61_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL62_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL62_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL62_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL64_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL64_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL64_b4_RNA_brain.T64_b4_Brain_PCW18.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL57_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL57_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL57_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL59_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL59_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL59_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL60_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL60_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL60_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL61_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL61_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL61_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL62_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL62_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL62_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL64_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL64_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL64_b4_RNA_brain.T94_b4_Brain_PCW17.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL57_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL57_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL57_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL59_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL59_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL59_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL60_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL60_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL60_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL61_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL61_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL61_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL62_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL62_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL62_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-RNA-UMIs-sum-across-files.py SL64_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.table.filelist SL64_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500 0 SL64_b4_RNA_brain.T129_b4_Brain_PCW22.end1.hg38-STAR-2.5.3a.SHARE-seq_RNA_counts.gencode.v26.annotation.UMIs_per_cell.min500.sparse -sparse