python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T106_b13_Eye_PCW17 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T106_b13_Eye_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T106_b13_Eye_PCW17 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T106_b13_Eye_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T106_b13_Eye_PCW17 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T106_b13_Eye_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T106_b13_Eye_PCW17 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T106_b13_Eye_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T106_b13_Eye_PCW17 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T106_b13_Eye_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T106_b13_Eye_PCW17 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T106_b13_Eye_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T180_b13_Eye_PCW19 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T180_b13_Eye_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T180_b13_Eye_PCW19 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T180_b13_Eye_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T180_b13_Eye_PCW19 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T180_b13_Eye_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T180_b13_Eye_PCW19 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T180_b13_Eye_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T180_b13_Eye_PCW19 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T180_b13_Eye_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T180_b13_Eye_PCW19 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T180_b13_Eye_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T186_b13_Eye_PCW23 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T186_b13_Eye_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T186_b13_Eye_PCW23 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T186_b13_Eye_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T186_b13_Eye_PCW23 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T186_b13_Eye_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T186_b13_Eye_PCW23 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T186_b13_Eye_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T186_b13_Eye_PCW23 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T186_b13_Eye_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T186_b13_Eye_PCW23 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T186_b13_Eye_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T410_b13_Eye_PCW13 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T410_b13_Eye_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T410_b13_Eye_PCW13 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T410_b13_Eye_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T410_b13_Eye_PCW13 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T410_b13_Eye_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T410_b13_Eye_PCW13 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T410_b13_Eye_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T410_b13_Eye_PCW13 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T410_b13_Eye_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T410_b13_Eye_PCW13 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T410_b13_Eye_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T51_b13_Eye_PCW20 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T51_b13_Eye_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T51_b13_Eye_PCW20 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T51_b13_Eye_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T51_b13_Eye_PCW20 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T51_b13_Eye_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T51_b13_Eye_PCW20 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T51_b13_Eye_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T51_b13_Eye_PCW20 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T51_b13_Eye_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T51_b13_Eye_PCW20 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T51_b13_Eye_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T5_b13_Eye_PCW19 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T5_b13_Eye_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T5_b13_Eye_PCW19 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T5_b13_Eye_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T5_b13_Eye_PCW19 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T5_b13_Eye_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T5_b13_Eye_PCW19 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T5_b13_Eye_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T5_b13_Eye_PCW19 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T5_b13_Eye_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T5_b13_Eye_PCW19 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T5_b13_Eye_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T79_b13_Eye_PCW18 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T79_b13_Eye_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T79_b13_Eye_PCW18 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T79_b13_Eye_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T79_b13_Eye_PCW18 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T79_b13_Eye_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T79_b13_Eye_PCW18 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T79_b13_Eye_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T79_b13_Eye_PCW18 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T79_b13_Eye_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL198_b13_RNA_EyeRedo/SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T79_b13_Eye_PCW18 2 -revcomp | gzip > SL198_b13_RNA_EyeRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T79_b13_Eye_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T136_b16_Thyroid_PCW21 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T136_b16_Thyroid_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T136_b16_Thyroid_PCW21 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T136_b16_Thyroid_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T136_b16_Thyroid_PCW21 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T136_b16_Thyroid_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T136_b16_Thyroid_PCW21 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T136_b16_Thyroid_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T136_b16_Thyroid_PCW21 2 -revcomp | gzip > SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T136_b16_Thyroid_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T136_b16_Thyroid_PCW21 2 -revcomp | gzip > SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T136_b16_Thyroid_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T176_b16_Thyroid_PCW19 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T176_b16_Thyroid_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T176_b16_Thyroid_PCW19 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T176_b16_Thyroid_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T176_b16_Thyroid_PCW19 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T176_b16_Thyroid_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T176_b16_Thyroid_PCW19 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T176_b16_Thyroid_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T176_b16_Thyroid_PCW19 2 -revcomp | gzip > SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T176_b16_Thyroid_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T176_b16_Thyroid_PCW19 2 -revcomp | gzip > SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T176_b16_Thyroid_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T273_b16_Adr_PCW18 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T273_b16_Adr_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T273_b16_Adr_PCW18 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T273_b16_Adr_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T273_b16_Adr_PCW18 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T273_b16_Adr_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T273_b16_Adr_PCW18 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T273_b16_Adr_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T273_b16_Adr_PCW18 2 -revcomp | gzip > SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T273_b16_Adr_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T273_b16_Adr_PCW18 2 -revcomp | gzip > SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T273_b16_Adr_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b16_Spleen_PCW21 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T314_b16_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b16_Spleen_PCW21 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T314_b16_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b16_Spleen_PCW21 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T314_b16_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b16_Spleen_PCW21 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T314_b16_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b16_Spleen_PCW21 2 -revcomp | gzip > SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T314_b16_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b16_Spleen_PCW21 2 -revcomp | gzip > SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T314_b16_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T318_b16_Adr_PCW21 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T318_b16_Adr_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T318_b16_Adr_PCW21 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T318_b16_Adr_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T318_b16_Adr_PCW21 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T318_b16_Adr_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T318_b16_Adr_PCW21 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T318_b16_Adr_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T318_b16_Adr_PCW21 2 -revcomp | gzip > SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T318_b16_Adr_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T318_b16_Adr_PCW21 2 -revcomp | gzip > SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T318_b16_Adr_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T390_b16_Adr_PCW13 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T390_b16_Adr_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T390_b16_Adr_PCW13 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T390_b16_Adr_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T390_b16_Adr_PCW13 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T390_b16_Adr_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T390_b16_Adr_PCW13 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T390_b16_Adr_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T390_b16_Adr_PCW13 2 -revcomp | gzip > SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T390_b16_Adr_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T390_b16_Adr_PCW13 2 -revcomp | gzip > SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T390_b16_Adr_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T40_b16_Adr_PCW17 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T40_b16_Adr_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T40_b16_Adr_PCW17 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T40_b16_Adr_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T40_b16_Adr_PCW17 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T40_b16_Adr_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T40_b16_Adr_PCW17 2 -revcomp | gzip > SL264_b15_RNA_AdrenalThyroidSpleen.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T40_b16_Adr_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T40_b16_Adr_PCW17 2 -revcomp | gzip > SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T40_b16_Adr_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL264_b15_RNA_AdrenalThyroidSpleen/SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T40_b16_Adr_PCW17 2 -revcomp | gzip > SL264_b16_RNA_AdrenalThyroidSpleen.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T40_b16_Adr_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T165_b17_Spleen_PCW19 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T165_b17_Spleen_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T233_b17_Thymus_PCW21 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T233_b17_Thymus_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T23_b17_Thymus_PCW17 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T23_b17_Thymus_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T270_b17_Spleen_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T270_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T314_b17_Spleen_PCW21 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T314_b17_Spleen_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T406_b17_Thymus_PCW19 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T406_b17_Thymus_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T88_b17_Spleen_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T88_b17_Spleen_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL246_b17_RNA_SpleenThymus/SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T90_b17_Thymus_PCW18 2 -revcomp | gzip > SL246_b17_RNA_SpleenThymus.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T90_b17_Thymus_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T166_b15_Liver_PCW19 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T166_b15_Liver_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T166_b15_Liver_PCW19 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T166_b15_Liver_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T166_b15_Liver_PCW19 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T166_b15_Liver_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T166_b15_Liver_PCW19 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T166_b15_Liver_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T166_b15_Liver_PCW19 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T166_b15_Liver_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T166_b15_Liver_PCW19 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T166_b15_Liver_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T235_b15_Liver_PCW21 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T235_b15_Liver_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T235_b15_Liver_PCW21 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T235_b15_Liver_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T235_b15_Liver_PCW21 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T235_b15_Liver_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T235_b15_Liver_PCW21 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T235_b15_Liver_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T235_b15_Liver_PCW21 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T235_b15_Liver_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T235_b15_Liver_PCW21 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T235_b15_Liver_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T275_b15_Liver_PCW18 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T275_b15_Liver_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T275_b15_Liver_PCW18 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T275_b15_Liver_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T275_b15_Liver_PCW18 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T275_b15_Liver_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T275_b15_Liver_PCW18 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T275_b15_Liver_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T275_b15_Liver_PCW18 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T275_b15_Liver_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T275_b15_Liver_PCW18 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T275_b15_Liver_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T350_b15_Liver_PCW21 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T350_b15_Liver_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T350_b15_Liver_PCW21 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T350_b15_Liver_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T350_b15_Liver_PCW21 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T350_b15_Liver_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T350_b15_Liver_PCW21 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T350_b15_Liver_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T350_b15_Liver_PCW21 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T350_b15_Liver_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T350_b15_Liver_PCW21 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T350_b15_Liver_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T375_b15_Liver_PCW15 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T375_b15_Liver_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T375_b15_Liver_PCW15 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T375_b15_Liver_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T375_b15_Liver_PCW15 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T375_b15_Liver_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T375_b15_Liver_PCW15 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T375_b15_Liver_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T375_b15_Liver_PCW15 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T375_b15_Liver_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T375_b15_Liver_PCW15 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T375_b15_Liver_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T398_b15_Liver_PCW17 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T398_b15_Liver_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T398_b15_Liver_PCW17 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T398_b15_Liver_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T398_b15_Liver_PCW17 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T398_b15_Liver_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T398_b15_Liver_PCW17 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T398_b15_Liver_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T398_b15_Liver_PCW17 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T398_b15_Liver_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T398_b15_Liver_PCW17 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T398_b15_Liver_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T71_b15_Liver_PCW18 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T71_b15_Liver_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T71_b15_Liver_PCW18 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230315_A00509_0687_BH2YMVDSX7.barcodes_annotated.RNA_UMI.barcode_T71_b15_Liver_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T71_b15_Liver_PCW18 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T71_b15_Liver_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T71_b15_Liver_PCW18 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230329_A00509_0696_AH3TL3DSX7.barcodes_annotated.RNA_UMI.barcode_T71_b15_Liver_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T71_b15_Liver_PCW18 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T71_b15_Liver_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-SHARE-seq/SL221_b15_RNA_LiverRedo/SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T71_b15_Liver_PCW18 2 -revcomp | gzip > SL221_b15_RNA_LiverRedo.230428_A00509_0718_AH5KFCDSX7.barcodes_annotated.RNA_UMI.barcode_T71_b15_Liver_PCW18.end2.fastq.gz